ATRT_T1--1	11:134054713	C	NA	61	0	54	35.185	9.639	0	0	0	48	0	NCAPD3	intronic	NA
ATRT_T1--2	11:134054713	C	T	47	0.085	37	35.676	5.774	4	32.250	2.062	31	4	NCAPD3	intronic	NA
ATRT_T1--3	11:134054713	C	NA	53	0	43	35.977	5.922	0	0	0	40	0	NCAPD3	intronic	NA
ATRT_T1--4	11:134054713	C	T	52	0.038	43	34.465	8.876	2	38.000	1.414	37	2	NCAPD3	intronic	NA
ATRT_T1--5	11:134054713	C	T	65	0.169	45	36.067	4.984	11	33.273	4.519	39	9	NCAPD3	intronic	NA
ATRT_T1--GL	11:134054713	C	NA	46	0	37	35.676	5.954	0	0	0	32	0	NCAPD3	intronic	NA
ATRT_T1--1	1:1861595	G	NA	90	0	90	32.222	10.360	0	0	0	71	0	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--2	1:1861595	G	A	55	0.036	53	34.981	4.643	2	32.500	9.192	48	1	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--3	1:1861595	G	NA	87	0	86	31.860	9.577	0	0	0	67	0	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--4	1:1861595	G	A	87	0.299	61	32.984	8.455	26	33.923	8.337	49	23	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--5	1:1861595	G	A	104	0.490	53	33.321	7.730	51	34.196	7.584	45	43	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--GL	1:1861595	G	NA	142	0	142	34.296	7.463	0	0	0	126	0	TMEM52(dist=10855),KIAA1751(dist=23157)	intergenic	NA
ATRT_T1--1	15:101717394	A	NA	36	0	36	38.306	2.867	0	0	0	36	0	CHSY1	UTR3	NA
ATRT_T1--2	15:101717394	A	NA	40	0	39	38.462	2.703	0	0	0	39	0	CHSY1	UTR3	NA
ATRT_T1--3	15:101717394	A	NA	48	0	48	37.125	7.339	0	0	0	45	0	CHSY1	UTR3	NA
ATRT_T1--4	15:101717394	A	NA	41	0	41	37.171	6.477	0	0	0	39	0	CHSY1	UTR3	NA
ATRT_T1--5	15:101717394	A	G	68	0.412	40	36.475	7.756	28	38.357	3.908	34	26	CHSY1	UTR3	NA
ATRT_T1--GL	15:101717394	A	NA	43	0	43	37.930	4.273	0	0	0	42	0	CHSY1	UTR3	NA
ATRT_T1--1	15:52485066	A	T	55	0.164	30	38.000	3.029	9	37.889	2.934	29	9	MYO5C	ncRNA_UTR3	NA
ATRT_T1--2	15:52485066	A	T	19	0.158	12	38.667	2.807	3	37.333	6.351	12	3	MYO5C	ncRNA_UTR3	NA
ATRT_T1--3	15:52485066	A	T	38	0.079	24	37.000	6.903	3	39.667	1.528	22	3	MYO5C	ncRNA_UTR3	NA
ATRT_T1--4	15:52485066	A	T	36	0.167	21	37.238	6.434	6	39.667	2.066	19	6	MYO5C	ncRNA_UTR3	NA
ATRT_T1--5	15:52485066	A	T	41	0.073	26	37.038	5.546	3	38.333	3.055	23	3	MYO5C	ncRNA_UTR3	NA
ATRT_T1--GL	15:52485066	A	NA	51	0	33	39.121	2.583	0	0	0	33	0	MYO5C	ncRNA_UTR3	NA
ATRT_T1--1	16:32469767	C	A	39	0.128	34	38.029	4.482	5	36.800	2.387	33	5	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--2	16:32469767	C	A	26	0.269	19	36.947	5.720	7	38.429	3.309	17	7	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--3	16:32469767	C	A	37	0.243	27	37.000	8.014	9	38.222	4.147	25	9	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--4	16:32469767	C	A	31	0.161	26	36.731	5.103	5	35.800	4.147	25	5	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--5	16:32469767	C	A	54	0.148	46	37.978	3.673	8	34.875	7.298	43	5	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--GL	16:32469767	C	NA	38	0	38	38.500	5.280	0	0	0	36	0	LOC390705(dist=168465),TP53TG3B(dist=215082)	intergenic	NA
ATRT_T1--1	17:21188367	C	NA	33	0	33	35.636	7.254	0	0	0	31	0	MAP2K3	intronic	NA
ATRT_T1--2	17:21188367	C	T	38	0.158	32	34.094	7.485	6	36.500	3.391	27	6	MAP2K3	intronic	NA
ATRT_T1--3	17:21188367	C	NA	54	0	54	34.222	7.270	0	0	0	45	0	MAP2K3	intronic	NA
ATRT_T1--4	17:21188367	C	NA	45	0	45	32.200	12.018	0	0	0	37	0	MAP2K3	intronic	NA
ATRT_T1--5	17:21188367	C	NA	53	0	53	34.396	7.945	0	0	0	48	0	MAP2K3	intronic	NA
ATRT_T1--GL	17:21188367	C	NA	97	0	97	33.938	8.614	0	0	0	88	0	MAP2K3	intronic	NA
ATRT_T1--1	17:43192549	T	C	50	0.080	46	28.674	10.311	4	21.500	15.927	29	2	PLCD3	exonic	unknown
ATRT_T1--2	17:43192549	T	C	43	0.116	38	28.447	10.689	5	27.600	14.484	22	4	PLCD3	exonic	unknown
ATRT_T1--3	17:43192549	T	C	46	0.022	45	28.889	8.383	1	31.000	0.000	27	1	PLCD3	exonic	unknown
ATRT_T1--4	17:43192549	T	C	50	0.180	41	26.390	12.320	9	23.889	16.541	23	6	PLCD3	exonic	unknown
ATRT_T1--5	17:43192549	T	C	67	0.090	61	28.262	10.584	6	32.833	2.041	38	5	PLCD3	exonic	unknown
ATRT_T1--GL	17:43192549	T	NA	71	0	68	28.162	11.271	0	0	0	45	0	PLCD3	exonic	unknown
ATRT_T1--1	19:579269	G	A	34	0.176	26	32.846	10.003	6	31.500	2.588	22	5	BSG	intronic	NA
ATRT_T1--2	19:579269	G	NA	10	0	8	32.000	12.638	0	0	0	7	0	BSG	intronic	NA
ATRT_T1--3	19:579269	G	A	28	0.036	25	31.360	11.365	1	35.000	0.000	22	1	BSG	intronic	NA
ATRT_T1--4	19:579269	G	NA	31	0	30	33.433	10.615	0	0	0	26	0	BSG	intronic	NA
ATRT_T1--5	19:579269	G	NA	51	0	47	32.872	11.269	0	0	0	41	0	BSG	intronic	NA
ATRT_T1--GL	19:579269	G	NA	53	0	43	35.884	4.651	0	0	0	38	0	BSG	intronic	NA
ATRT_T1--1	19:5867564	G	NA	73	0	72	33.250	9.043	0	0	0	61	0	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--2	19:5867564	G	NA	61	0	61	32.590	11.571	0	0	0	49	0	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--3	19:5867564	G	NA	74	0	73	33.411	8.350	0	0	0	62	0	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--4	19:5867564	G	A	75	0.320	51	32.490	10.508	24	29.125	10.588	42	16	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--5	19:5867564	G	A	108	0.537	49	34.490	7.380	58	32.034	8.993	42	46	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--GL	19:5867564	G	NA	134	0	132	34.470	6.861	0	0	0	115	0	FUT5	exonic	nonsynonymous_SNV
ATRT_T1--1	20:1539016	C	T	64	0.516	30	34.967	6.749	33	35.333	9.133	26	31	SIRPD	upstream	NA
ATRT_T1--2	20:1539016	C	T	42	0.071	39	34.590	6.386	3	35.000	0.000	33	3	SIRPD	upstream	NA
ATRT_T1--3	20:1539016	C	T	71	0.085	64	34.922	7.006	6	34.833	3.656	59	5	SIRPD	upstream	NA
ATRT_T1--4	20:1539016	C	T	47	0.170	39	35.000	7.370	8	36.875	4.486	35	8	SIRPD	upstream	NA
ATRT_T1--5	20:1539016	C	NA	95	0	94	34.319	9.386	0	0	0	81	0	SIRPD	upstream	NA
ATRT_T1--GL	20:1539016	C	NA	58	0	58	34.121	7.616	0	0	0	49	0	SIRPD	upstream	NA
ATRT_T1--1	21:14756477	G	A	52	0.154	44	35.636	8.047	8	38.000	2.563	40	8	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--2	21:14756477	G	A	23	0.043	22	35.500	8.551	1	41.000	0.000	19	1	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--3	21:14756477	G	A	49	0.163	41	36.122	3.989	8	35.875	7.586	38	7	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--4	21:14756477	G	A	51	0.373	32	36.875	7.290	19	37.842	3.790	30	18	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--5	21:14756477	G	A	43	0.233	33	33.727	8.949	10	37.600	3.438	28	10	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--GL	21:14756477	G	NA	36	0	36	36.361	5.602	0	0	0	34	0	ANKRD30BP2(dist=265906),MIR3156-3(dist=22228)	intergenic	NA
ATRT_T1--1	21:40668666	A	G	60	0.067	56	39.071	2.557	4	36.750	2.630	56	4	BRWD1	UTR3	NA
ATRT_T1--2	21:40668666	A	G	20	0.050	19	37.368	8.827	1	39.000	0.000	18	1	BRWD1	UTR3	NA
ATRT_T1--3	21:40668666	A	G	45	0.067	42	37.119	4.925	3	35.667	2.887	39	3	BRWD1	UTR3	NA
ATRT_T1--4	21:40668666	A	G	28	0.179	23	39.391	2.675	5	34.000	5.196	23	4	BRWD1	UTR3	NA
ATRT_T1--5	21:40668666	A	G	37	0.108	33	38.667	2.367	4	35.750	3.948	33	4	BRWD1	UTR3	NA
ATRT_T1--GL	21:40668666	A	NA	44	0	44	37.045	7.266	0	0	0	40	0	BRWD1	UTR3	NA
ATRT_T1--1	22:40546047	G	NA	21	0	21	37.905	3.604	0	0	0	20	0	TNRC6B	intronic	NA
ATRT_T1--2	22:40546047	G	A	23	0.087	21	38.381	3.324	2	35.000	0.000	20	2	TNRC6B	intronic	NA
ATRT_T1--3	22:40546047	G	A	23	0.087	21	37.286	5.031	2	34.000	1.414	20	2	TNRC6B	intronic	NA
ATRT_T1--4	22:40546047	G	NA	13	0	13	32.231	10.497	0	0	0	11	0	TNRC6B	intronic	NA
ATRT_T1--5	22:40546047	G	A	27	0.185	22	35.818	8.157	5	33.800	1.789	21	5	TNRC6B	intronic	NA
ATRT_T1--GL	22:40546047	G	NA	46	0	46	36.913	6.348	0	0	0	44	0	TNRC6B	intronic	NA
ATRT_T1--1	2:7170422	G	A	49	0.122	43	34.186	7.844	6	33.833	2.137	36	6	RNF144A	intronic	NA
ATRT_T1--2	2:7170422	G	A	40	0.100	36	36.333	5.836	4	32.750	5.679	35	3	RNF144A	intronic	NA
ATRT_T1--3	2:7170422	G	A	33	0.212	26	34.385	6.998	7	33.714	3.592	23	6	RNF144A	intronic	NA
ATRT_T1--4	2:7170422	G	A	41	0.122	36	33.194	9.674	5	34.600	2.881	29	5	RNF144A	intronic	NA
ATRT_T1--5	2:7170422	G	A	51	0.098	46	35.022	8.526	5	36.400	1.342	38	5	RNF144A	intronic	NA
ATRT_T1--GL	2:7170422	G	NA	38	0	37	37.135	4.204	0	0	0	35	0	RNF144A	intronic	NA
ATRT_T1--1	3:195515716	C	NA	48	0	47	35.255	7.467	0	0	0	40	0	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--2	3:195515716	C	NA	50	0	50	35.820	8.196	0	0	0	47	0	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--3	3:195515716	C	NA	76	0	76	34.947	7.216	0	0	0	66	0	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--4	3:195515716	C	NA	50	0	50	36.320	5.909	0	0	0	49	0	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--5	3:195515716	C	G	85	0.329	56	35.071	9.322	28	34.964	7.914	51	24	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--GL	3:195515716	C	NA	108	0	108	36.028	5.754	0	0	0	99	0	MUC4	exonic	nonsynonymous_SNV
ATRT_T1--1	3:46759065	C	NA	35	0	35	29.143	11.104	0	0	0	25	0	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--2	3:46759065	C	NA	23	0	23	30.522	7.657	0	0	0	18	0	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--3	3:46759065	C	NA	29	0	29	30.828	9.032	0	0	0	22	0	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--4	3:46759065	C	T	27	0.148	23	34.391	5.541	4	37.000	4.967	20	4	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--5	3:46759065	C	NA	46	0	46	31.043	10.235	0	0	0	37	0	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--GL	3:46759065	C	NA	52	0	52	32.981	7.959	0	0	0	44	0	PRSS50	exonic	nonsynonymous_SNV
ATRT_T1--1	4:184237192	C	A	24	0.042	23	32.739	9.082	1	37.000	0.000	18	1	WWC2	UTR3	NA
ATRT_T1--2	4:184237192	C	NA	12	0	12	37.250	3.621	0	0	0	12	0	WWC2	UTR3	NA
ATRT_T1--3	4:184237192	C	A	18	0.056	17	35.412	5.969	1	31.000	0.000	15	1	WWC2	UTR3	NA
ATRT_T1--4	4:184237192	C	A	30	0.200	24	35.833	5.036	6	34.167	1.941	21	6	WWC2	UTR3	NA
ATRT_T1--5	4:184237192	C	NA	30	0	30	34.400	7.863	0	0	0	25	0	WWC2	UTR3	NA
ATRT_T1--GL	4:184237192	C	NA	35	0	35	35.771	4.298	0	0	0	32	0	WWC2	UTR3	NA
ATRT_T1--1	8:22279010	G	A	36	0.194	29	36.552	7.457	7	35.429	4.721	27	6	SLC39A14	UTR3	NA
ATRT_T1--2	8:22279010	G	A	25	0.080	23	37.261	4.873	2	38.000	4.243	21	2	SLC39A14	UTR3	NA
ATRT_T1--3	8:22279010	G	NA	37	0	37	37.459	4.925	0	0	0	34	0	SLC39A14	UTR3	NA
ATRT_T1--4	8:22279010	G	A	19	0.053	18	33.778	10.519	1	30.000	0.000	15	1	SLC39A14	UTR3	NA
ATRT_T1--5	8:22279010	G	NA	40	0	40	37.550	4.971	0	0	0	39	0	SLC39A14	UTR3	NA
ATRT_T1--GL	8:22279010	G	NA	33	0	33	37.697	3.046	0	0	0	33	0	SLC39A14	UTR3	NA
ATRT_T1--1	8:9619159	G	NA	51	0	46	25.891	13.056	0	0	0	21	0	TNKS	intronic	NA
ATRT_T1--2	8:9619159	G	NA	35	0	30	25.333	10.956	0	0	0	13	0	TNKS	intronic	NA
ATRT_T1--3	8:9619159	G	NA	49	0	41	27.220	10.990	0	0	0	22	0	TNKS	intronic	NA
ATRT_T1--4	8:9619159	G	A	44	0.159	37	25.865	13.083	7	28.143	12.482	18	5	TNKS	intronic	NA
ATRT_T1--5	8:9619159	G	A	69	0.159	58	28.224	11.587	11	28.091	13.627	34	7	TNKS	intronic	NA
ATRT_T1--GL	8:9619159	G	NA	68	0	62	30.290	9.650	0	0	0	37	0	TNKS	intronic	NA
ATRT_T2--1	10:118890018	C	T	46	0.022	27	32.444	7.939	1	35.000	0.000	22	1	VAX1	UTR3	NA
ATRT_T2--2	10:118890018	C	T	63	0.143	33	31.606	9.972	9	25.000	14.204	26	6	VAX1	UTR3	NA
ATRT_T2--3	10:118890018	C	T	43	0.116	24	32.292	8.343	5	35.000	1.414	20	5	VAX1	UTR3	NA
ATRT_T2--4	10:118890018	C	T	47	0.043	35	32.657	8.974	2	29.500	2.121	28	1	VAX1	UTR3	NA
ATRT_T2--5	10:118890018	C	T	46	0.043	28	35.321	2.420	2	28.000	4.243	28	1	VAX1	UTR3	NA
ATRT_T2--GL	10:118890018	C	NA	73	0	60	33.250	8.323	0	0	0	50	0	VAX1	UTR3	NA
ATRT_T2--1	10:16982168	G	NA	35	0	35	36.543	7.208	0	0	0	32	0	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--2	10:16982168	G	NA	74	0	74	37.986	3.912	0	0	0	70	0	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--3	10:16982168	G	NA	45	0	45	39.089	3.253	0	0	0	43	0	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--4	10:16982168	G	NA	49	0	49	38.551	3.958	0	0	0	48	0	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--5	10:16982168	G	A	44	0.273	32	35.812	9.553	12	40.750	0.622	29	12	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--GL	10:16982168	G	NA	56	0	56	38.018	3.725	0	0	0	55	0	CUBN	exonic	nonsynonymous_SNV
ATRT_T2--1	11:124958740	G	T	41	0.122	36	35.833	8.027	5	35.600	1.342	33	5	SLC37A2	UTR3	NA
ATRT_T2--2	11:124958740	G	T	51	0.255	38	37.316	4.205	13	33.462	2.876	35	12	SLC37A2	UTR3	NA
ATRT_T2--3	11:124958740	G	T	40	0.025	39	36.051	9.997	1	35.000	0.000	35	1	SLC37A2	UTR3	NA
ATRT_T2--4	11:124958740	G	T	35	0.057	33	37.394	6.764	2	37.000	0.000	32	2	SLC37A2	UTR3	NA
ATRT_T2--5	11:124958740	G	T	26	0.038	25	35.640	8.113	1	34.000	0.000	23	1	SLC37A2	UTR3	NA
ATRT_T2--GL	11:124958740	G	NA	61	0	61	36.656	6.223	0	0	0	56	0	SLC37A2	UTR3	NA
ATRT_T2--1	1:161722779	C	NA	38	0	38	37.237	6.776	0	0	0	36	0	DUSP12	intronic	NA
ATRT_T2--2	1:161722779	C	A	44	0.045	42	38.286	4.845	2	34.500	0.707	41	2	DUSP12	intronic	NA
ATRT_T2--3	1:161722779	C	A	22	0.273	16	38.625	2.849	6	33.667	1.366	16	6	DUSP12	intronic	NA
ATRT_T2--4	1:161722779	C	A	23	0.087	21	38.000	5.030	2	32.500	2.121	20	2	DUSP12	intronic	NA
ATRT_T2--5	1:161722779	C	NA	30	0	30	38.567	2.239	0	0	0	30	0	DUSP12	intronic	NA
ATRT_T2--GL	1:161722779	C	NA	47	0	47	38.745	2.722	0	0	0	46	0	DUSP12	intronic	NA
ATRT_T2--1	1:162773312	C	NA	49	0	49	38.469	4.169	0	0	0	46	0	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--2	1:162773312	C	NA	71	0	71	38.901	4.952	0	0	0	69	0	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--3	1:162773312	C	NA	43	0	43	39.209	2.253	0	0	0	43	0	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--4	1:162773312	C	T	50	0.180	41	38.683	3.553	9	39.889	1.453	39	9	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--5	1:162773312	C	NA	42	0	42	37.333	7.767	0	0	0	39	0	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--GL	1:162773312	C	NA	51	0	51	38.255	5.813	0	0	0	50	0	HSD17B7	exonic	nonsynonymous_SNV
ATRT_T2--1	1:206906652	C	NA	15	0	15	31.933	10.222	0	0	0	12	0	MAPKAPK2	UTR3	NA
ATRT_T2--2	1:206906652	C	NA	27	0	27	37.111	4.173	0	0	0	25	0	MAPKAPK2	UTR3	NA
ATRT_T2--3	1:206906652	C	NA	22	0	22	37.091	3.853	0	0	0	21	0	MAPKAPK2	UTR3	NA
ATRT_T2--4	1:206906652	C	NA	21	0	21	35.000	6.427	0	0	0	18	0	MAPKAPK2	UTR3	NA
ATRT_T2--5	1:206906652	C	T	16	0.188	13	35.923	3.451	3	35.333	3.512	13	3	MAPKAPK2	UTR3	NA
ATRT_T2--GL	1:206906652	C	NA	36	0	36	35.917	3.524	0	0	0	35	0	MAPKAPK2	UTR3	NA
ATRT_T2--1	12:125432387	G	NA	22	0	22	34.273	7.833	0	0	0	20	0	DHX37	exonic	synonymous_SNV
ATRT_T2--2	12:125432387	G	NA	46	0	46	35.870	3.403	0	0	0	46	0	DHX37	exonic	synonymous_SNV
ATRT_T2--3	12:125432387	G	A	35	0.457	19	31.632	10.915	16	35.125	2.802	16	15	DHX37	exonic	synonymous_SNV
ATRT_T2--4	12:125432387	G	NA	45	0	45	34.578	8.481	0	0	0	41	0	DHX37	exonic	synonymous_SNV
ATRT_T2--5	12:125432387	G	A	39	0.026	38	35.868	4.363	1	40.000	0.000	37	1	DHX37	exonic	synonymous_SNV
ATRT_T2--GL	12:125432387	G	NA	67	0	67	34.448	6.542	0	0	0	62	0	DHX37	exonic	synonymous_SNV
ATRT_T2--1	1:221055109	C	NA	24	0	22	35.227	8.159	0	0	0	20	0	HLX	intronic	NA
ATRT_T2--2	1:221055109	C	A	27	0.148	17	36.000	9.421	4	34.250	0.500	16	4	HLX	intronic	NA
ATRT_T2--3	1:221055109	C	A	26	0.077	19	31.684	13.491	2	33.000	2.828	16	2	HLX	intronic	NA
ATRT_T2--4	1:221055109	C	NA	23	0	22	32.409	10.716	0	0	0	17	0	HLX	intronic	NA
ATRT_T2--5	1:221055109	C	NA	18	0	18	33.333	9.139	0	0	0	16	0	HLX	intronic	NA
ATRT_T2--GL	1:221055109	C	NA	48	0	39	34.333	8.619	0	0	0	35	0	HLX	intronic	NA
ATRT_T2--1	1:41972273	T	NA	21	0	17	38.118	2.395	0	0	0	17	0	HIVEP3	UTR3	NA
ATRT_T2--2	1:41972273	T	G	64	0.125	40	34.575	9.440	8	36.750	2.765	36	8	HIVEP3	UTR3	NA
ATRT_T2--3	1:41972273	T	G	28	0.036	25	37.600	3.069	1	35.000	0.000	25	1	HIVEP3	UTR3	NA
ATRT_T2--4	1:41972273	T	NA	37	0	30	36.333	4.838	0	0	0	28	0	HIVEP3	UTR3	NA
ATRT_T2--5	1:41972273	T	G	32	0.062	22	36.000	3.251	2	39.000	2.828	22	2	HIVEP3	UTR3	NA
ATRT_T2--GL	1:41972273	T	NA	54	0	38	36.789	7.091	0	0	0	35	0	HIVEP3	UTR3	NA
ATRT_T2--1	14:24659412	T	A	25	0.200	20	38.300	2.386	5	34.200	1.789	20	5	TM9SF1	UTR3	NA
ATRT_T2--2	14:24659412	T	A	37	0.054	35	38.429	3.883	2	34.000	0.000	33	2	TM9SF1	UTR3	NA
ATRT_T2--3	14:24659412	T	A	29	0.069	27	36.296	5.511	2	34.500	0.707	23	2	TM9SF1	UTR3	NA
ATRT_T2--4	14:24659412	T	A	34	0.059	32	38.938	3.991	2	35.000	0.000	30	2	TM9SF1	UTR3	NA
ATRT_T2--5	14:24659412	T	A	22	0.045	21	38.238	2.827	1	35.000	0.000	21	1	TM9SF1	UTR3	NA
ATRT_T2--GL	14:24659412	T	NA	49	0	49	37.367	4.720	0	0	0	46	0	TM9SF1	UTR3	NA
ATRT_T2--1	1:48762684	G	C	35	0.029	20	35.700	6.650	1	37.000	0.000	17	1	SPATA6	UTR3	NA
ATRT_T2--2	1:48762684	G	C	51	0.118	32	36.500	8.466	6	35.333	3.077	28	6	SPATA6	UTR3	NA
ATRT_T2--3	1:48762684	G	NA	35	0	24	39.000	2.798	0	0	0	24	0	SPATA6	UTR3	NA
ATRT_T2--4	1:48762684	G	C	32	0.031	26	38.423	2.859	1	34.000	0.000	26	1	SPATA6	UTR3	NA
ATRT_T2--5	1:48762684	G	NA	26	0	17	36.765	5.203	0	0	0	16	0	SPATA6	UTR3	NA
ATRT_T2--GL	1:48762684	G	NA	58	0	41	38.195	3.544	0	0	0	40	0	SPATA6	UTR3	NA
ATRT_T2--1	15:101844790	G	NA	61	0	61	36.033	7.488	0	0	0	55	0	PCSK6	UTR3	NA
ATRT_T2--2	15:101844790	G	NA	70	0	70	36.329	8.195	0	0	0	64	0	PCSK6	UTR3	NA
ATRT_T2--3	15:101844790	G	NA	55	0	55	37.164	5.627	0	0	0	54	0	PCSK6	UTR3	NA
ATRT_T2--4	15:101844790	G	NA	76	0	76	36.303	6.635	0	0	0	71	0	PCSK6	UTR3	NA
ATRT_T2--5	15:101844790	G	A	47	0.319	32	36.250	7.089	15	33.867	6.947	31	12	PCSK6	UTR3	NA
ATRT_T2--GL	15:101844790	G	NA	82	0	81	36.185	7.068	0	0	0	75	0	PCSK6	UTR3	NA
ATRT_T2--1	15:76578083	C	NA	50	0	50	38.120	5.446	0	0	0	47	0	ETFA	intronic	NA
ATRT_T2--2	15:76578083	C	NA	64	0	64	39.156	2.608	0	0	0	64	0	ETFA	intronic	NA
ATRT_T2--3	15:76578083	C	T	57	0.228	44	39.159	2.569	13	39.000	2.198	44	13	ETFA	intronic	NA
ATRT_T2--4	15:76578083	C	NA	55	0	55	38.745	4.029	0	0	0	53	0	ETFA	intronic	NA
ATRT_T2--5	15:76578083	C	NA	37	0	37	38.135	3.473	0	0	0	36	0	ETFA	intronic	NA
ATRT_T2--GL	15:76578083	C	NA	76	0	76	38.197	5.523	0	0	0	73	0	ETFA	intronic	NA
ATRT_T2--1	16:11773662	C	NA	13	0	13	37.692	4.697	0	0	0	12	0	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--2	16:11773662	C	NA	23	0	23	34.522	10.740	0	0	0	21	0	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--3	16:11773662	C	T	22	0.182	17	38.412	2.895	4	39.250	2.872	17	4	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--4	16:11773662	C	NA	14	0	14	38.643	3.003	0	0	0	14	0	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--5	16:11773662	C	NA	25	0	25	35.560	7.567	0	0	0	22	0	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--GL	16:11773662	C	NA	44	0	44	35.659	5.937	0	0	0	41	0	TXNDC11	exonic	nonsynonymous_SNV
ATRT_T2--1	16:2049882	G	C	16	0.188	13	34.462	5.060	3	24.000	19.157	11	2	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--2	16:2049882	G	C	34	0.176	28	31.857	9.641	6	29.667	13.589	23	5	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--3	16:2049882	G	C	19	0.158	16	35.125	7.219	3	35.000	2.000	14	3	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--4	16:2049882	G	C	19	0.053	18	31.056	9.071	1	37.000	0.000	14	1	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--5	16:2049882	G	NA	15	0	15	31.000	11.723	0	0	0	12	0	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--GL	16:2049882	G	NA	52	0	51	32.059	10.304	0	0	0	40	0	ZNF598	exonic	nonsynonymous_SNV
ATRT_T2--1	16:2809012	G	NA	43	0	43	38.465	3.376	0	0	0	42	0	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--2	16:2809012	G	NA	61	0	61	38.393	3.997	0	0	0	60	0	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--3	16:2809012	G	NA	49	0	49	37.082	7.320	0	0	0	44	0	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--4	16:2809012	G	NA	58	0	58	37.534	6.760	0	0	0	55	0	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--5	16:2809012	G	C	29	0.345	19	37.684	5.197	10	36.500	2.838	17	10	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--GL	16:2809012	G	NA	82	0	82	37.415	5.223	0	0	0	78	0	SRRM2	exonic	nonsynonymous_SNV
ATRT_T2--1	17:71081008	T	NA	76	0	76	36.184	8.270	0	0	0	68	0	SLC39A11	intronic	NA
ATRT_T2--2	17:71081008	T	G	88	0.011	87	38.920	2.958	1	33.000	0.000	85	1	SLC39A11	intronic	NA
ATRT_T2--3	17:71081008	T	G	70	0.286	50	37.260	6.430	20	37.350	8.683	47	19	SLC39A11	intronic	NA
ATRT_T2--4	17:71081008	T	NA	98	0	98	37.929	3.723	0	0	0	94	0	SLC39A11	intronic	NA
ATRT_T2--5	17:71081008	T	NA	50	0	49	37.653	5.918	0	0	0	48	0	SLC39A11	intronic	NA
ATRT_T2--GL	17:71081008	T	NA	128	0	128	36.930	5.148	0	0	0	120	0	SLC39A11	intronic	NA
ATRT_T2--1	19:19618060	C	NA	21	0	21	30.048	12.508	0	0	0	14	0	GATAD2A	UTR3	NA
ATRT_T2--2	19:19618060	C	NA	38	0	35	28.629	13.952	0	0	0	24	0	GATAD2A	UTR3	NA
ATRT_T2--3	19:19618060	C	A	17	0.118	15	33.733	12.481	2	34.000	1.414	13	2	GATAD2A	UTR3	NA
ATRT_T2--4	19:19618060	C	NA	27	0	26	29.423	13.476	0	0	0	18	0	GATAD2A	UTR3	NA
ATRT_T2--5	19:19618060	C	A	23	0.174	19	29.421	13.314	4	31.000	5.657	15	3	GATAD2A	UTR3	NA
ATRT_T2--GL	19:19618060	C	NA	45	0	43	30.302	12.208	0	0	0	32	0	GATAD2A	UTR3	NA
ATRT_T2--1	19:57324186	T	A	42	0.024	41	34.293	8.498	1	33.000	0.000	36	1	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--2	19:57324186	T	A	55	0.036	53	29.962	13.046	2	31.000	2.828	41	1	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--3	19:57324186	T	A	38	0.026	37	32.324	11.399	1	33.000	0.000	32	1	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--4	19:57324186	T	A	33	0.182	27	30.444	14.426	6	32.667	3.830	20	5	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--5	19:57324186	T	A	28	0.071	26	30.154	11.295	2	34.000	4.243	21	2	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--GL	19:57324186	T	NA	44	0	43	29.558	13.747	0	0	0	35	0	PEG3-AS1	ncRNA_exonic	NA
ATRT_T2--1	20:43836780	G	NA	146	0	145	38.434	4.683	0	0	0	141	0	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--2	20:43836780	G	NA	211	0	211	38.185	6.185	0	0	0	201	0	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--3	20:43836780	G	NA	152	0	152	38.329	3.955	0	0	0	147	0	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--4	20:43836780	G	A	182	0.005	181	38.166	4.335	1	41.000	0.000	177	1	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--5	20:43836780	G	A	147	0.381	91	37.242	6.558	56	37.482	4.251	84	54	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--GL	20:43836780	G	NA	238	0	237	37.679	5.207	0	0	0	230	0	SEMG1	exonic	nonsynonymous_SNV
ATRT_T2--1	20:44004159	A	T	23	0.217	18	38.500	1.917	5	34.600	2.510	18	5	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--2	20:44004159	A	NA	40	0	40	36.275	5.472	0	0	0	34	0	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--3	20:44004159	A	NA	22	0	22	39.000	3.703	0	0	0	21	0	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--4	20:44004159	A	NA	30	0	28	37.536	3.863	0	0	0	27	0	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--5	20:44004159	A	NA	31	0	31	37.129	7.173	0	0	0	29	0	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--GL	20:44004159	A	NA	40	0	40	37.600	6.392	0	0	0	39	0	TP53TG5	exonic	nonsynonymous_SNV
ATRT_T2--1	2:101607031	C	NA	24	0	24	36.958	4.525	0	0	0	23	0	NPAS2	intronic	NA
ATRT_T2--2	2:101607031	C	G	24	0.167	20	38.300	3.114	4	36.750	4.646	20	4	NPAS2	intronic	NA
ATRT_T2--3	2:101607031	C	NA	20	0	20	35.650	8.647	0	0	0	19	0	NPAS2	intronic	NA
ATRT_T2--4	2:101607031	C	NA	36	0	36	37.028	5.300	0	0	0	33	0	NPAS2	intronic	NA
ATRT_T2--5	2:101607031	C	NA	31	0	31	37.742	4.560	0	0	0	30	0	NPAS2	intronic	NA
ATRT_T2--GL	2:101607031	C	NA	56	0	56	38.089	3.238	0	0	0	55	0	NPAS2	intronic	NA
ATRT_T2--1	2:109401291	T	G	22	0.045	21	39.143	2.516	1	34.000	0.000	21	1	RANBP2	UTR3	NA
ATRT_T2--2	2:109401291	T	G	48	0.167	40	37.725	3.297	8	38.125	3.441	39	8	RANBP2	UTR3	NA
ATRT_T2--3	2:109401291	T	G	38	0.079	35	37.286	7.311	3	38.333	3.786	33	3	RANBP2	UTR3	NA
ATRT_T2--4	2:109401291	T	G	37	0.081	34	37.824	6.878	3	37.000	5.196	33	3	RANBP2	UTR3	NA
ATRT_T2--5	2:109401291	T	NA	21	0	20	38.400	3.235	0	0	0	20	0	RANBP2	UTR3	NA
ATRT_T2--GL	2:109401291	T	NA	42	0	41	38.780	2.851	0	0	0	40	0	RANBP2	UTR3	NA
ATRT_T2--1	2:179517416	C	NA	45	0	45	38.511	3.035	0	0	0	44	0	TTN	exonic	nonsynonymous_SNV
ATRT_T2--2	2:179517416	C	G	43	0.140	37	35.973	8.060	6	38.000	3.578	33	6	TTN	exonic	nonsynonymous_SNV
ATRT_T2--3	2:179517416	C	NA	36	0	36	38.194	3.883	0	0	0	34	0	TTN	exonic	nonsynonymous_SNV
ATRT_T2--4	2:179517416	C	NA	40	0	40	38.175	3.895	0	0	0	38	0	TTN	exonic	nonsynonymous_SNV
ATRT_T2--5	2:179517416	C	NA	47	0	47	37.979	5.863	0	0	0	46	0	TTN	exonic	nonsynonymous_SNV
ATRT_T2--GL	2:179517416	C	NA	55	0	54	35.185	8.488	0	0	0	48	0	TTN	exonic	nonsynonymous_SNV
ATRT_T2--1	22:20749067	A	NA	29	0	29	37.241	4.120	0	0	0	28	0	ZNF74	intronic	NA
ATRT_T2--2	22:20749067	A	T	38	0.026	37	37.676	3.559	1	32.000	0.000	36	1	ZNF74	intronic	NA
ATRT_T2--3	22:20749067	A	T	26	0.231	20	39.000	4.142	6	30.000	1.549	19	5	ZNF74	intronic	NA
ATRT_T2--4	22:20749067	A	T	22	0.045	21	38.476	2.600	1	32.000	0.000	21	1	ZNF74	intronic	NA
ATRT_T2--5	22:20749067	A	T	24	0.042	23	39.217	2.763	1	35.000	0.000	23	1	ZNF74	intronic	NA
ATRT_T2--GL	22:20749067	A	NA	74	0	74	37.014	6.663	0	0	0	71	0	ZNF74	intronic	NA
ATRT_T2--1	2:42577803	T	NA	14	0	14	38.071	5.061	0	0	0	13	0	COX7A2L	UTR3	NA
ATRT_T2--2	2:42577803	T	C	30	0.100	27	37.889	7.490	3	38.667	4.041	26	3	COX7A2L	UTR3	NA
ATRT_T2--3	2:42577803	T	C	20	0.250	15	38.667	3.559	5	35.800	3.033	14	5	COX7A2L	UTR3	NA
ATRT_T2--4	2:42577803	T	C	26	0.077	24	38.250	3.554	2	32.500	2.121	23	2	COX7A2L	UTR3	NA
ATRT_T2--5	2:42577803	T	C	21	0.095	19	38.947	2.121	2	36.500	6.364	19	2	COX7A2L	UTR3	NA
ATRT_T2--GL	2:42577803	T	NA	34	0	34	38.118	3.328	0	0	0	34	0	COX7A2L	UTR3	NA
ATRT_T2--1	3:10004649	T	C	47	0.021	29	38.655	3.436	1	38.000	0.000	29	1	EMC3	downstream	NA
ATRT_T2--2	3:10004649	T	C	50	0.120	25	39.440	1.873	6	39.333	2.422	25	6	EMC3	downstream	NA
ATRT_T2--3	3:10004649	T	C	45	0.044	27	39.333	2.760	2	37.000	4.243	27	2	EMC3	downstream	NA
ATRT_T2--4	3:10004649	T	C	51	0.059	31	37.839	7.317	3	35.333	4.041	29	3	EMC3	downstream	NA
ATRT_T2--5	3:10004649	T	C	40	0.050	25	37.640	3.510	2	40.000	1.414	24	2	EMC3	downstream	NA
ATRT_T2--GL	3:10004649	T	NA	58	0	38	38.474	3.501	0	0	0	37	0	EMC3	downstream	NA
ATRT_T2--1	5:76359099	C	A	13	0.308	9	37.667	2.000	4	34.250	0.957	9	4	AGGF1	UTR3	NA
ATRT_T2--2	5:76359099	C	A	51	0.020	50	38.560	2.409	1	35.000	0.000	50	1	AGGF1	UTR3	NA
ATRT_T2--3	5:76359099	C	NA	26	0	26	35.654	9.600	0	0	0	24	0	AGGF1	UTR3	NA
ATRT_T2--4	5:76359099	C	NA	22	0	22	37.409	3.594	0	0	0	22	0	AGGF1	UTR3	NA
ATRT_T2--5	5:76359099	C	NA	24	0	24	38.292	3.290	0	0	0	23	0	AGGF1	UTR3	NA
ATRT_T2--GL	5:76359099	C	NA	35	0	35	38.029	3.815	0	0	0	34	0	AGGF1	UTR3	NA
ATRT_T2--1	6:131905429	C	A	24	0.167	20	38.500	3.940	4	41.000	0.000	19	4	ARG1	UTR3	NA
ATRT_T2--2	6:131905429	C	NA	31	0	31	39.419	3.722	0	0	0	30	0	ARG1	UTR3	NA
ATRT_T2--3	6:131905429	C	NA	24	0	24	39.292	2.971	0	0	0	24	0	ARG1	UTR3	NA
ATRT_T2--4	6:131905429	C	NA	30	0	29	38.207	4.931	0	0	0	27	0	ARG1	UTR3	NA
ATRT_T2--5	6:131905429	C	NA	25	0	25	38.640	3.012	0	0	0	25	0	ARG1	UTR3	NA
ATRT_T2--GL	6:131905429	C	NA	34	0	34	38.412	4.164	0	0	0	33	0	ARG1	UTR3	NA
ATRT_T2--1	6:152421907	C	A	33	0.242	24	24.208	15.595	8	31.250	4.590	12	6	ESR1	UTR3	NA
ATRT_T2--2	6:152421907	C	NA	49	0	43	28.767	12.911	0	0	0	28	0	ESR1	UTR3	NA
ATRT_T2--3	6:152421907	C	A	40	0.200	32	32.188	10.663	8	22.125	13.163	23	4	ESR1	UTR3	NA
ATRT_T2--4	6:152421907	C	A	27	0.111	23	28.783	14.241	3	22.667	17.898	16	2	ESR1	UTR3	NA
ATRT_T2--5	6:152421907	C	A	18	0.222	13	30.077	14.829	4	34.250	2.217	10	4	ESR1	UTR3	NA
ATRT_T2--GL	6:152421907	C	A	54	0.019	51	31.275	11.500	1	27.000	0.000	38	0	ESR1	UTR3	NA
ATRT_T2--1	6:90454983	G	NA	67	0	67	38.597	2.913	0	0	0	66	0	MDN1	intronic	NA
ATRT_T2--2	6:90454983	G	A	70	0.114	61	38.033	5.779	8	39.625	2.066	58	8	MDN1	intronic	NA
ATRT_T2--3	6:90454983	G	NA	67	0	67	38.015	4.487	0	0	0	63	0	MDN1	intronic	NA
ATRT_T2--4	6:90454983	G	NA	51	0	51	37.824	7.699	0	0	0	49	0	MDN1	intronic	NA
ATRT_T2--5	6:90454983	G	NA	42	0	42	39.119	2.360	0	0	0	42	0	MDN1	intronic	NA
ATRT_T2--GL	6:90454983	G	NA	80	0	80	38.725	3.822	0	0	0	78	0	MDN1	intronic	NA
ATRT_T2--1	7:141635538	C	A	18	0.222	14	39.000	4.206	4	37.000	0.000	13	4	CLEC5A	intronic	NA
ATRT_T2--2	7:141635538	C	NA	25	0	25	38.840	3.837	0	0	0	24	0	CLEC5A	intronic	NA
ATRT_T2--3	7:141635538	C	A	15	0.133	13	38.462	3.045	2	34.000	0.000	13	2	CLEC5A	intronic	NA
ATRT_T2--4	7:141635538	C	NA	23	0	23	38.348	3.446	0	0	0	23	0	CLEC5A	intronic	NA
ATRT_T2--5	7:141635538	C	A	11	0.091	10	36.800	3.393	1	35.000	0.000	10	1	CLEC5A	intronic	NA
ATRT_T2--GL	7:141635538	C	NA	37	0	37	36.486	8.026	0	0	0	32	0	CLEC5A	intronic	NA
ATRT_T2--1	7:4871879	C	NA	27	0	26	34.346	7.924	0	0	0	22	0	RADIL	intronic	NA
ATRT_T2--2	7:4871879	C	T	37	0.135	32	36.938	3.555	5	25.800	14.772	30	3	RADIL	intronic	NA
ATRT_T2--3	7:4871879	C	NA	33	0	31	36.839	4.648	0	0	0	30	0	RADIL	intronic	NA
ATRT_T2--4	7:4871879	C	T	34	0.206	27	37.852	2.461	7	34.857	3.934	27	7	RADIL	intronic	NA
ATRT_T2--5	7:4871879	C	NA	29	0	27	37.778	2.562	0	0	0	27	0	RADIL	intronic	NA
ATRT_T2--GL	7:4871879	C	NA	51	0	50	35.840	6.332	0	0	0	47	0	RADIL	intronic	NA
ATRT_T2--1	7:97836817	T	NA	32	0	20	28.350	12.119	0	0	0	14	0	LMTK2	UTR3	NA
ATRT_T2--2	7:97836817	T	NA	59	0	44	30.500	10.602	0	0	0	34	0	LMTK2	UTR3	NA
ATRT_T2--3	7:97836817	T	A	39	0.077	24	23.292	14.547	3	31.000	1.000	13	3	LMTK2	UTR3	NA
ATRT_T2--4	7:97836817	T	A	38	0.132	24	29.417	12.924	5	31.200	3.271	17	4	LMTK2	UTR3	NA
ATRT_T2--5	7:97836817	T	NA	26	0	16	30.562	11.558	0	0	0	13	0	LMTK2	UTR3	NA
ATRT_T2--GL	7:97836817	T	NA	61	0	37	33.459	7.381	0	0	0	33	0	LMTK2	UTR3	NA
ATRT_T2--1	8:103661366	C	T	24	0.167	20	37.950	4.224	4	34.750	2.500	19	4	KLF10	UTR3	NA
ATRT_T2--2	8:103661366	C	T	34	0.029	33	37.848	7.349	1	35.000	0.000	31	1	KLF10	UTR3	NA
ATRT_T2--3	8:103661366	C	T	33	0.091	30	39.767	2.569	3	35.333	1.155	29	3	KLF10	UTR3	NA
ATRT_T2--4	8:103661366	C	T	28	0.179	23	39.565	3.057	5	35.800	1.095	22	5	KLF10	UTR3	NA
ATRT_T2--5	8:103661366	C	T	21	0.143	18	39.222	2.602	3	24.000	19.079	18	2	KLF10	UTR3	NA
ATRT_T2--GL	8:103661366	C	NA	40	0	40	39.025	2.506	0	0	0	40	0	KLF10	UTR3	NA
ATRT_T2--1	8:144641160	C	NA	29	0	29	31.069	12.959	0	0	0	22	0	GSDMD	intronic	NA
ATRT_T2--2	8:144641160	C	G	44	0.159	37	34.946	8.775	7	33.429	2.936	34	6	GSDMD	intronic	NA
ATRT_T2--3	8:144641160	C	G	29	0.103	26	32.808	13.230	3	32.667	2.309	21	3	GSDMD	intronic	NA
ATRT_T2--4	8:144641160	C	G	30	0.033	29	34.517	7.872	1	32.000	0.000	25	1	GSDMD	intronic	NA
ATRT_T2--5	8:144641160	C	NA	17	0	17	34.235	10.627	0	0	0	14	0	GSDMD	intronic	NA
ATRT_T2--GL	8:144641160	C	NA	42	0	42	35.667	6.400	0	0	0	35	0	GSDMD	intronic	NA
ATRT_T2--1	9:140108916	T	NA	32	0	14	35.000	9.743	0	0	0	13	0	NDOR1	intronic	NA
ATRT_T2--2	9:140108916	T	G	38	0.053	22	36.591	2.197	2	32.500	2.121	22	2	NDOR1	intronic	NA
ATRT_T2--3	9:140108916	T	G	27	0.037	15	30.467	12.053	1	34.000	0.000	12	1	NDOR1	intronic	NA
ATRT_T2--4	9:140108916	T	G	36	0.111	16	34.125	10.191	4	32.750	3.862	14	3	NDOR1	intronic	NA
ATRT_T2--5	9:140108916	T	NA	31	0	8	25.500	14.182	0	0	0	5	0	NDOR1	intronic	NA
ATRT_T2--GL	9:140108916	T	NA	52	0	37	32.324	11.240	0	0	0	31	0	NDOR1	intronic	NA
ATRT_T2--1	9:15468415	C	A	56	0.036	28	37.929	7.313	2	41.000	0.000	27	2	PSIP1	intronic	NA
ATRT_T2--2	9:15468415	C	A	68	0.029	41	37.244	6.927	2	34.000	0.000	37	2	PSIP1	intronic	NA
ATRT_T2--3	9:15468415	C	A	51	0.039	36	38.917	3.027	2	34.000	0.000	35	2	PSIP1	intronic	NA
ATRT_T2--4	9:15468415	C	A	62	0.016	31	39.000	2.503	1	41.000	0.000	31	1	PSIP1	intronic	NA
ATRT_T2--5	9:15468415	C	A	31	0.129	13	37.154	3.648	4	35.750	3.948	13	4	PSIP1	intronic	NA
ATRT_T2--GL	9:15468415	C	NA	56	0	37	38.108	5.264	0	0	0	34	0	PSIP1	intronic	NA
ATRT_T2--1	GL000220.1:120835	G	NA	15	0	14	31.000	11.806	0	0	0	10	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
ATRT_T2--2	GL000220.1:120835	G	C	37	0.189	25	30.680	9.728	7	33.429	5.159	19	5	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
ATRT_T2--3	GL000220.1:120835	G	NA	15	0	14	34.500	3.568	0	0	0	13	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
ATRT_T2--4	GL000220.1:120835	G	C	21	0.143	15	31.067	11.342	3	35.667	4.163	13	3	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
ATRT_T2--5	GL000220.1:120835	G	C	16	0.062	10	30.400	10.936	1	35.000	0.000	7	1	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
ATRT_T2--GL	GL000220.1:120835	G	NA	45	0	43	32.465	8.592	0	0	0	34	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr10:17746386	C	NA	21	0	21	36.762	3.846	0	0	0	20	0	STAM	intronic	NA
GBM_A_T1--2	chr10:17746386	C	NA	10	0	10	36.600	3.239	0	0	0	10	0	STAM	intronic	NA
GBM_A_T1--3	chr10:17746386	C	NA	26	0	26	37.577	4.139	0	0	0	25	0	STAM	intronic	NA
GBM_A_T1--4	chr10:17746386	C	NA	23	0	23	37.522	4.044	0	0	0	21	0	STAM	intronic	NA
GBM_A_T1--5	chr10:17746386	C	A	20	0.200	16	35.688	6.897	4	33.500	1.732	15	4	STAM	intronic	NA
GBM_A_T1--6	chr10:17746386	C	NA	30	0	30	35.867	3.461	0	0	0	30	0	STAM	intronic	NA
GBM_A_T1--7	chr10:17746386	C	NA	22	0	22	35.864	7.766	0	0	0	20	0	STAM	intronic	NA
GBM_A_T1--8	chr10:17746386	C	NA	29	0	29	38.138	3.409	0	0	0	28	0	STAM	intronic	NA
GBM_A_T1--GL	chr10:17746386	C	NA	33	0	33	35.727	4.625	0	0	0	30	0	STAM	intronic	NA
GBM_A_T1--1	chr10:30749746	C	NA	32	0	32	37.188	2.978	0	0	0	32	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr10:30749746	C	NA	20	0	20	36.650	2.889	0	0	0	20	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr10:30749746	C	NA	28	0	27	36.593	2.777	0	0	0	27	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr10:30749746	C	A	28	0.143	24	36.208	3.476	4	36.750	4.349	23	4	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr10:30749746	C	NA	23	0	23	35.870	6.100	0	0	0	22	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr10:30749746	C	NA	57	0	57	33.351	6.485	0	0	0	45	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr10:30749746	C	A	49	0.020	48	35.188	5.064	1	40.000	0.000	43	1	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr10:30749746	C	NA	49	0	49	32.327	6.890	0	0	0	41	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr10:30749746	C	NA	75	0	75	33.813	5.997	0	0	0	64	0	MAP3K8	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr10:33471763	A	NA	68	0	66	32.924	5.373	0	0	0	60	0	NRP1	intronic	NA
GBM_A_T1--2	chr10:33471763	A	NA	34	0	34	35.382	2.882	0	0	0	33	0	NRP1	intronic	NA
GBM_A_T1--3	chr10:33471763	A	NA	66	0	64	34.609	3.922	0	0	0	60	0	NRP1	intronic	NA
GBM_A_T1--4	chr10:33471763	A	NA	65	0	65	34.723	3.621	0	0	0	61	0	NRP1	intronic	NA
GBM_A_T1--5	chr10:33471763	A	G	61	0.033	59	33.627	4.114	2	37.000	2.828	56	2	NRP1	intronic	NA
GBM_A_T1--6	chr10:33471763	A	NA	109	0	108	32.787	4.859	0	0	0	91	0	NRP1	intronic	NA
GBM_A_T1--7	chr10:33471763	A	G	95	0.021	91	33.736	3.969	2	34.000	7.071	80	1	NRP1	intronic	NA
GBM_A_T1--8	chr10:33471763	A	G	137	0.861	19	31.316	6.650	118	36.186	5.277	16	112	NRP1	intronic	NA
GBM_A_T1--GL	chr10:33471763	A	NA	129	0	126	32.310	5.733	0	0	0	105	0	NRP1	intronic	NA
GBM_A_T1--1	chr10:71000416	C	NA	19	0	19	36.000	3.073	0	0	0	19	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr10:71000416	C	NA	10	0	10	36.300	3.268	0	0	0	10	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr10:71000416	C	NA	19	0	19	37.368	3.270	0	0	0	19	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr10:71000416	C	NA	18	0	18	36.167	3.034	0	0	0	18	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr10:71000416	C	NA	15	0	15	37.067	2.815	0	0	0	15	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr10:71000416	C	NA	23	0	23	36.870	2.752	0	0	0	23	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr10:71000416	C	NA	12	0	12	36.917	3.502	0	0	0	12	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr10:71000416	C	A	12	0.333	8	37.000	3.207	4	35.250	2.500	8	4	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr10:71000416	C	NA	46	0	46	36.239	3.374	0	0	0	45	0	HKDC1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr10:91503828	C	NA	38	0	38	33.211	8.121	0	0	0	33	0	KIF20B	intronic	NA
GBM_A_T1--2	chr10:91503828	C	A	11	0.273	8	30.750	5.471	3	36.667	2.082	5	3	KIF20B	intronic	NA
GBM_A_T1--3	chr10:91503828	C	NA	28	0	28	33.357	6.734	0	0	0	24	0	KIF20B	intronic	NA
GBM_A_T1--4	chr10:91503828	C	NA	41	0	41	33.805	6.084	0	0	0	36	0	KIF20B	intronic	NA
GBM_A_T1--5	chr10:91503828	C	A	32	0.031	31	32.677	7.300	1	37.000	0.000	26	1	KIF20B	intronic	NA
GBM_A_T1--6	chr10:91503828	C	NA	67	0	65	31.662	8.722	0	0	0	49	0	KIF20B	intronic	NA
GBM_A_T1--7	chr10:91503828	C	NA	59	0	58	32.483	7.236	0	0	0	45	0	KIF20B	intronic	NA
GBM_A_T1--8	chr10:91503828	C	NA	80	0	80	31.800	7.967	0	0	0	59	0	KIF20B	intronic	NA
GBM_A_T1--GL	chr10:91503828	C	NA	94	0	92	31.565	7.739	0	0	0	68	0	KIF20B	intronic	NA
GBM_A_T1--1	chr1:110086796	C	NA	24	0	24	35.167	6.761	0	0	0	21	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:110086796	C	NA	14	0	14	37.429	2.980	0	0	0	14	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:110086796	C	NA	28	0	28	37.036	4.256	0	0	0	26	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:110086796	C	A	27	0.148	23	36.000	4.178	4	38.500	3.000	22	4	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:110086796	C	NA	15	0	15	37.067	3.555	0	0	0	15	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:110086796	C	NA	31	0	31	34.935	7.720	0	0	0	27	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:110086796	C	NA	29	0	29	36.448	5.268	0	0	0	27	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:110086796	C	NA	29	0	29	34.655	4.569	0	0	0	26	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:110086796	C	NA	66	0	66	37.303	3.658	0	0	0	63	0	GPR61	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:117772916	A	NA	28	0	28	35.821	3.312	0	0	0	27	0	TMPRSS13	UTR3	NA
GBM_A_T1--2	chr11:117772916	A	G	13	0.231	10	35.400	3.471	3	37.667	3.055	9	3	TMPRSS13	UTR3	NA
GBM_A_T1--3	chr11:117772916	A	NA	21	0	20	36.900	2.864	0	0	0	20	0	TMPRSS13	UTR3	NA
GBM_A_T1--4	chr11:117772916	A	NA	39	0	39	35.231	5.324	0	0	0	36	0	TMPRSS13	UTR3	NA
GBM_A_T1--5	chr11:117772916	A	NA	23	0	23	36.609	3.434	0	0	0	22	0	TMPRSS13	UTR3	NA
GBM_A_T1--6	chr11:117772916	A	NA	39	0	39	34.641	5.738	0	0	0	31	0	TMPRSS13	UTR3	NA
GBM_A_T1--7	chr11:117772916	A	NA	45	0	45	34.222	6.223	0	0	0	41	0	TMPRSS13	UTR3	NA
GBM_A_T1--8	chr11:117772916	A	NA	45	0	45	34.378	5.503	0	0	0	40	0	TMPRSS13	UTR3	NA
GBM_A_T1--GL	chr11:117772916	A	NA	82	0	82	34.829	6.122	0	0	0	72	0	TMPRSS13	UTR3	NA
GBM_A_T1--1	chr11:1220423	C	NA	18	0	18	36.889	4.575	0	0	0	17	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--2	chr11:1220423	C	NA	14	0	14	36.071	5.356	0	0	0	13	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--3	chr11:1220423	C	NA	30	0	30	36.167	6.193	0	0	0	29	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--4	chr11:1220423	C	NA	30	0	30	35.900	3.623	0	0	0	29	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--5	chr11:1220423	C	NA	24	0	24	35.250	6.215	0	0	0	22	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--6	chr11:1220423	C	A	23	0.174	19	36.526	3.238	4	35.750	3.594	19	4	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--7	chr11:1220423	C	NA	37	0	36	33.472	5.119	0	0	0	32	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--8	chr11:1220423	C	NA	24	0	24	34.208	5.445	0	0	0	22	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--GL	chr11:1220423	C	NA	70	0	70	35.857	4.185	0	0	0	68	0	MUC2(dist=116007),MUC5B(dist=23872)	intergenic	NA
GBM_A_T1--1	chr11:130780160	C	NA	50	0	50	37.380	3.948	0	0	0	48	0	SNX19	intronic	NA
GBM_A_T1--2	chr11:130780160	C	A	23	0.174	19	39.000	2.211	4	34.000	5.598	19	3	SNX19	intronic	NA
GBM_A_T1--3	chr11:130780160	C	NA	49	0	49	37.714	3.476	0	0	0	47	0	SNX19	intronic	NA
GBM_A_T1--4	chr11:130780160	C	NA	39	0	39	37.256	3.654	0	0	0	37	0	SNX19	intronic	NA
GBM_A_T1--5	chr11:130780160	C	NA	43	0	43	36.581	3.520	0	0	0	41	0	SNX19	intronic	NA
GBM_A_T1--6	chr11:130780160	C	NA	60	0	60	36.383	6.206	0	0	0	55	0	SNX19	intronic	NA
GBM_A_T1--7	chr11:130780160	C	NA	75	0	75	36.773	4.593	0	0	0	69	0	SNX19	intronic	NA
GBM_A_T1--8	chr11:130780160	C	NA	87	0	87	36.862	5.755	0	0	0	82	0	SNX19	intronic	NA
GBM_A_T1--GL	chr11:130780160	C	NA	87	0	86	35.930	5.089	0	0	0	77	0	SNX19	intronic	NA
GBM_A_T1--1	chr1:113245203	C	NA	22	0	22	34.591	5.077	0	0	0	19	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:113245203	C	NA	13	0	13	35.692	4.679	0	0	0	12	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:113245203	C	NA	18	0	18	34.000	7.104	0	0	0	14	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:113245203	C	NA	24	0	24	35.667	4.188	0	0	0	23	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:113245203	C	NA	18	0	18	34.611	5.468	0	0	0	17	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:113245203	C	NA	36	0	36	35.028	2.813	0	0	0	35	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:113245203	C	NA	21	0	21	34.095	4.636	0	0	0	18	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:113245203	C	A	18	0.222	14	36.214	4.458	4	32.500	1.732	13	4	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:113245203	C	NA	54	0	54	34.907	5.461	0	0	0	49	0	RHOC	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:115604789	T	NA	51	0	51	34.569	4.277	0	0	0	47	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--2	chr1:115604789	T	NA	11	0	11	34.364	3.171	0	0	0	9	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--3	chr1:115604789	T	NA	37	0	37	33.568	6.534	0	0	0	31	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--4	chr1:115604789	T	NA	42	0	42	33.952	7.238	0	0	0	36	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--5	chr1:115604789	T	C	23	0.217	18	35.056	3.718	5	32.000	9.747	16	4	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--6	chr1:115604789	T	NA	42	0	42	34.214	3.693	0	0	0	38	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--7	chr1:115604789	T	NA	42	0	42	32.143	7.707	0	0	0	31	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--8	chr1:115604789	T	NA	47	0	47	32.596	6.717	0	0	0	38	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--GL	chr1:115604789	T	NA	62	0	62	34.065	4.223	0	0	0	54	0	TSPAN2	exonic	synonymous_SNV
GBM_A_T1--1	chr1:11574568	C	NA	38	0	37	36.081	4.023	0	0	0	34	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:11574568	C	A	14	0.214	11	35.455	2.911	3	37.000	3.464	11	3	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:11574568	C	NA	22	0	22	34.955	4.326	0	0	0	21	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:11574568	C	NA	22	0	22	37.318	2.767	0	0	0	22	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:11574568	C	NA	22	0	22	36.545	3.247	0	0	0	22	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:11574568	C	NA	43	0	43	34.605	4.153	0	0	0	39	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:11574568	C	NA	25	0	25	33.880	6.585	0	0	0	22	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:11574568	C	NA	29	0	29	34.276	5.202	0	0	0	26	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:11574568	C	NA	53	0	53	34.755	4.467	0	0	0	52	0	PTCHD2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:142537898	A	NA	31	0	31	33.968	4.806	0	0	0	27	0	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--2	chr1:142537898	A	G	13	0.077	12	35.500	3.754	1	41.000	0.000	11	1	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--3	chr1:142537898	A	G	29	0.034	28	34.107	4.748	1	39.000	0.000	26	1	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--4	chr1:142537898	A	NA	26	0	26	35.962	2.932	0	0	0	26	0	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--5	chr1:142537898	A	G	32	0.188	26	32.269	7.035	6	35.833	3.061	21	6	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--6	chr1:142537898	A	NA	20	0	20	34.600	3.202	0	0	0	19	0	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--7	chr1:142537898	A	NA	26	0	26	32.731	7.550	0	0	0	21	0	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--8	chr1:142537898	A	G	24	0.042	23	35.261	4.807	1	37.000	0.000	22	1	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--GL	chr1:142537898	A	NA	50	0	50	32.480	7.385	0	0	0	40	0	NONE(dist=NONE),ANKRD20A12P(dist=159523)	intergenic	NA
GBM_A_T1--1	chr11:47599553	C	NA	35	0	35	36.914	3.052	0	0	0	35	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr11:47599553	C	A	30	0.133	26	35.962	3.388	4	38.750	2.630	25	4	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr11:47599553	C	NA	41	0	41	37.829	3.146	0	0	0	41	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr11:47599553	C	NA	37	0	37	37.919	3.386	0	0	0	36	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr11:47599553	C	NA	30	0	30	37.767	2.622	0	0	0	30	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr11:47599553	C	NA	56	0	56	35.089	6.482	0	0	0	51	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr11:47599553	C	NA	55	0	55	37.218	3.315	0	0	0	54	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr11:47599553	C	NA	42	0	42	35.452	5.081	0	0	0	37	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr11:47599553	C	NA	132	0	132	35.886	4.466	0	0	0	121	0	KBTBD4	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:47809859	T	NA	15	0	15	37.733	2.789	0	0	0	15	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--2	chr11:47809859	T	A	13	0.231	10	37.200	4.733	3	35.333	4.726	9	3	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--3	chr11:47809859	T	NA	16	0	16	36.062	6.049	0	0	0	15	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--4	chr11:47809859	T	NA	11	0	11	38.273	2.649	0	0	0	11	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--5	chr11:47809859	T	NA	21	0	21	37.667	2.456	0	0	0	21	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--6	chr11:47809859	T	NA	32	0	32	36.469	3.943	0	0	0	30	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--7	chr11:47809859	T	NA	31	0	31	36.484	2.931	0	0	0	31	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--8	chr11:47809859	T	NA	31	0	31	34.323	6.467	0	0	0	27	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--GL	chr11:47809859	T	NA	65	0	65	35.554	6.013	0	0	0	58	0	NUP160(NM_015231:exon32:c.3623-2A>T)	splicing	NA
GBM_A_T1--1	chr11:49079295	A	NA	30	0	30	38.200	2.618	0	0	0	30	0	TRIM64C	intronic	NA
GBM_A_T1--2	chr11:49079295	A	NA	11	0	11	37.091	4.460	0	0	0	10	0	TRIM64C	intronic	NA
GBM_A_T1--3	chr11:49079295	A	G	28	0.214	22	38.409	2.108	6	39.833	2.401	22	6	TRIM64C	intronic	NA
GBM_A_T1--4	chr11:49079295	A	NA	23	0	23	38.565	3.776	0	0	0	22	0	TRIM64C	intronic	NA
GBM_A_T1--5	chr11:49079295	A	NA	25	0	25	38.520	2.347	0	0	0	25	0	TRIM64C	intronic	NA
GBM_A_T1--6	chr11:49079295	A	NA	40	0	40	37.625	3.279	0	0	0	38	0	TRIM64C	intronic	NA
GBM_A_T1--7	chr11:49079295	A	NA	29	0	29	36.621	4.255	0	0	0	26	0	TRIM64C	intronic	NA
GBM_A_T1--8	chr11:49079295	A	NA	40	0	40	37.050	4.314	0	0	0	37	0	TRIM64C	intronic	NA
GBM_A_T1--GL	chr11:49079295	A	NA	59	0	59	37.492	3.603	0	0	0	56	0	TRIM64C	intronic	NA
GBM_A_T1--1	chr1:151341518	C	NA	12	0	12	35.250	4.288	0	0	0	11	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:151341518	C	NA	11	0	11	36.000	2.898	0	0	0	11	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:151341518	C	NA	11	0	11	35.545	3.882	0	0	0	10	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:151341518	C	NA	19	0	19	36.368	2.985	0	0	0	19	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:151341518	C	NA	10	0	10	35.900	3.542	0	0	0	9	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:151341518	C	NA	13	0	13	34.769	4.086	0	0	0	12	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:151341518	C	A	16	0.188	13	36.923	2.957	3	35.333	3.512	13	3	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:151341518	C	NA	15	0	15	33.200	6.784	0	0	0	12	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:151341518	C	NA	42	0	42	33.786	5.266	0	0	0	35	0	SELENBP1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:51590541	C	G	19	0.053	18	39.222	3.524	1	37.000	0.000	17	1	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr11:51590541	C	NA	13	0	13	37.846	5.113	0	0	0	12	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr11:51590541	C	NA	28	0	28	38.750	3.460	0	0	0	27	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr11:51590541	C	NA	17	0	17	38.235	2.796	0	0	0	17	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr11:51590541	C	NA	18	0	18	38.556	2.975	0	0	0	18	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr11:51590541	C	G	27	0.185	22	37.182	4.963	5	37.200	2.387	21	5	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr11:51590541	C	NA	13	0	13	37.538	4.352	0	0	0	12	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr11:51590541	C	G	28	0.071	26	38.769	2.847	2	39.000	2.828	26	2	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr11:51590541	C	NA	72	0	72	37.028	4.562	0	0	0	67	0	OR4C46(dist=74330),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr11:56380627	T	C	32	0.031	31	38.935	2.768	1	35.000	0.000	31	1	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr11:56380627	T	NA	29	0	29	37.724	3.918	0	0	0	28	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr11:56380627	T	NA	42	0	42	38.095	4.658	0	0	0	41	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr11:56380627	T	C	36	0.222	27	37.741	3.033	8	38.500	2.828	26	8	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr11:56380627	T	NA	29	0	29	34.000	8.307	0	0	0	23	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr11:56380627	T	C	51	0.020	50	36.800	5.022	1	39.000	0.000	48	1	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr11:56380627	T	NA	47	0	47	37.574	3.769	0	0	0	46	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr11:56380627	T	NA	42	0	42	37.643	3.237	0	0	0	41	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr11:56380627	T	NA	121	0	121	37.793	3.256	0	0	0	119	0	OR5M1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:156899435	C	NA	38	0	38	35.526	6.259	0	0	0	36	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:156899435	C	A	15	0.200	12	35.750	4.003	3	40.000	1.732	11	3	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:156899435	C	NA	37	0	37	36.243	4.133	0	0	0	36	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:156899435	C	NA	26	0	26	35.923	3.698	0	0	0	24	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:156899435	C	NA	24	0	24	36.750	3.365	0	0	0	23	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:156899435	C	NA	40	0	40	35.050	4.835	0	0	0	36	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:156899435	C	NA	40	0	40	35.950	3.693	0	0	0	39	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:156899435	C	NA	35	0	35	36.486	3.988	0	0	0	33	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:156899435	C	NA	59	0	59	35.034	4.394	0	0	0	54	0	LRRC71	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:58380206	C	T	37	0.027	36	23.111	12.296	1	37.000	0.000	17	1	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--2	chr11:58380206	C	NA	10	0	10	20.500	12.430	0	0	0	4	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--3	chr11:58380206	C	T	34	0.029	33	22.394	11.500	1	35.000	0.000	13	1	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--4	chr11:58380206	C	NA	30	0	30	19.900	11.845	0	0	0	9	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--5	chr11:58380206	C	NA	38	0	38	22.553	11.963	0	0	0	17	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--6	chr11:58380206	C	T	46	0.152	39	18.795	11.265	7	31.000	9.110	11	6	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--7	chr11:58380206	C	NA	30	0	29	18.793	11.092	0	0	0	8	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--8	chr11:58380206	C	NA	47	0	44	17.182	11.582	0	0	0	10	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--GL	chr11:58380206	C	NA	52	0	51	20.922	10.777	0	0	0	15	0	ZFP91-CNTF	ncRNA_intronic	NA
GBM_A_T1--1	chr11:60170668	C	T	27	0.222	21	37.571	2.993	6	37.000	3.464	21	6	MS4A14	intronic	NA
GBM_A_T1--2	chr11:60170668	C	T	13	0.308	9	38.444	1.944	4	38.000	2.582	9	4	MS4A14	intronic	NA
GBM_A_T1--3	chr11:60170668	C	T	33	0.152	28	36.179	5.565	5	35.000	5.099	26	4	MS4A14	intronic	NA
GBM_A_T1--4	chr11:60170668	C	T	28	0.179	23	36.957	3.735	5	36.000	4.359	22	5	MS4A14	intronic	NA
GBM_A_T1--5	chr11:60170668	C	T	22	0.045	21	36.667	3.183	1	36.000	0.000	21	1	MS4A14	intronic	NA
GBM_A_T1--6	chr11:60170668	C	T	38	0.395	23	35.783	6.259	15	35.133	5.854	22	14	MS4A14	intronic	NA
GBM_A_T1--7	chr11:60170668	C	T	48	0.396	29	35.586	4.866	19	36.158	4.193	28	18	MS4A14	intronic	NA
GBM_A_T1--8	chr11:60170668	C	T	55	0.255	41	36.317	3.908	14	36.571	5.019	38	12	MS4A14	intronic	NA
GBM_A_T1--GL	chr11:60170668	C	NA	89	0	88	36.523	4.569	0	0	0	83	0	MS4A14	intronic	NA
GBM_A_T1--1	chr1:160864793	G	A	117	0.162	97	36.206	4.666	19	35.842	4.220	94	17	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--2	chr1:160864793	G	NA	55	0	55	35.145	5.851	0	0	0	49	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--3	chr1:160864793	G	NA	154	0	154	35.675	4.807	0	0	0	145	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--4	chr1:160864793	G	NA	124	0	124	35.290	5.729	0	0	0	112	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--5	chr1:160864793	G	NA	119	0	119	33.387	7.012	0	0	0	96	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--6	chr1:160864793	G	A	178	0.197	142	33.915	6.223	35	37.200	3.402	120	34	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--7	chr1:160864793	G	NA	172	0	172	34.698	6.362	0	0	0	150	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--8	chr1:160864793	G	A	166	0.163	139	34.475	6.469	27	35.296	4.419	117	25	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--GL	chr1:160864793	G	NA	341	0	338	34.142	6.680	0	0	0	289	0	ITLN1(dist=9833),ITLN2(dist=50023)	intergenic	NA
GBM_A_T1--1	chr11:60882498	C	NA	32	0	32	34.812	3.872	0	0	0	29	0	CD5	intronic	NA
GBM_A_T1--2	chr11:60882498	C	NA	18	0	18	35.444	2.662	0	0	0	18	0	CD5	intronic	NA
GBM_A_T1--3	chr11:60882498	C	NA	45	0	45	36.844	3.861	0	0	0	44	0	CD5	intronic	NA
GBM_A_T1--4	chr11:60882498	C	A	25	0.160	21	35.571	2.976	4	36.000	2.708	21	4	CD5	intronic	NA
GBM_A_T1--5	chr11:60882498	C	NA	24	0	24	35.500	3.217	0	0	0	23	0	CD5	intronic	NA
GBM_A_T1--6	chr11:60882498	C	NA	44	0	44	34.182	6.177	0	0	0	37	0	CD5	intronic	NA
GBM_A_T1--7	chr11:60882498	C	NA	33	0	33	34.394	4.663	0	0	0	28	0	CD5	intronic	NA
GBM_A_T1--8	chr11:60882498	C	NA	36	0	36	34.167	5.700	0	0	0	33	0	CD5	intronic	NA
GBM_A_T1--GL	chr11:60882498	C	NA	81	0	81	34.506	5.220	0	0	0	76	0	CD5	intronic	NA
GBM_A_T1--1	chr11:61109201	C	NA	29	0	29	35.655	4.134	0	0	0	27	0	DAK	intronic	NA
GBM_A_T1--2	chr11:61109201	C	NA	13	0	13	36.000	2.677	0	0	0	13	0	DAK	intronic	NA
GBM_A_T1--3	chr11:61109201	C	NA	24	0	24	35.625	3.954	0	0	0	22	0	DAK	intronic	NA
GBM_A_T1--4	chr11:61109201	C	A	26	0.038	25	36.200	4.163	1	40.000	0.000	23	1	DAK	intronic	NA
GBM_A_T1--5	chr11:61109201	C	NA	17	0	17	37.412	3.299	0	0	0	16	0	DAK	intronic	NA
GBM_A_T1--6	chr11:61109201	C	NA	18	0	18	34.722	2.718	0	0	0	18	0	DAK	intronic	NA
GBM_A_T1--7	chr11:61109201	C	A	21	0.190	17	35.118	5.085	4	35.000	3.742	15	4	DAK	intronic	NA
GBM_A_T1--8	chr11:61109201	C	NA	18	0	18	37.000	2.449	0	0	0	18	0	DAK	intronic	NA
GBM_A_T1--GL	chr11:61109201	C	NA	47	0	47	36.128	4.431	0	0	0	44	0	DAK	intronic	NA
GBM_A_T1--1	chr11:61524676	C	A	41	0.024	40	35.925	3.108	1	41.000	0.000	38	1	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--2	chr11:61524676	C	A	16	0.188	13	35.000	9.238	3	37.000	3.464	12	3	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--3	chr11:61524676	C	NA	60	0	60	35.733	6.181	0	0	0	57	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--4	chr11:61524676	C	NA	57	0	57	36.895	2.730	0	0	0	57	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--5	chr11:61524676	C	NA	46	0	46	36.478	6.010	0	0	0	43	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--6	chr11:61524676	C	NA	71	0	71	35.465	4.948	0	0	0	66	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--7	chr11:61524676	C	NA	48	0	48	34.979	4.962	0	0	0	43	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--8	chr11:61524676	C	NA	47	0	47	36.000	4.155	0	0	0	43	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--GL	chr11:61524676	C	NA	138	0	136	36.037	4.058	0	0	0	129	0	DKFZP434K028	ncRNA_exonic	NA
GBM_A_T1--1	chr11:64368222	C	T	64	0.188	52	36.615	4.438	12	30.833	8.789	49	9	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--2	chr11:64368222	C	T	46	0.304	32	35.938	3.689	14	29.571	8.829	31	8	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--3	chr11:64368222	C	T	95	0.074	88	35.091	4.813	7	33.143	4.525	82	6	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--4	chr11:64368222	C	T	74	0.135	64	35.484	5.065	10	33.500	4.905	62	8	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--5	chr11:64368222	C	T	59	0.186	47	36.106	5.005	11	31.727	5.694	44	6	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--6	chr11:64368222	C	T	82	0.317	54	33.481	4.286	26	30.462	8.296	49	16	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--7	chr11:64368222	C	T	90	0.511	44	34.591	4.002	46	31.848	6.055	41	32	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--8	chr11:64368222	C	T	93	0.290	66	35.455	5.390	27	31.222	5.706	63	19	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--GL	chr11:64368222	C	NA	163	0	163	34.325	6.081	0	0	0	143	0	SLC22A12	exonic	synonymous_SNV
GBM_A_T1--1	chr11:64496588	G	A	20	0.250	15	32.467	7.652	5	26.000	5.874	14	1	RASGRP2	intronic	NA
GBM_A_T1--2	chr11:64496588	G	A	18	0.333	12	32.500	5.108	6	29.000	6.419	10	3	RASGRP2	intronic	NA
GBM_A_T1--3	chr11:64496588	G	NA	18	0	17	31.529	7.484	0	0	0	15	0	RASGRP2	intronic	NA
GBM_A_T1--4	chr11:64496588	G	A	20	0.450	11	33.818	3.311	9	25.778	6.476	10	3	RASGRP2	intronic	NA
GBM_A_T1--5	chr11:64496588	G	A	23	0.348	15	30.667	7.471	8	26.125	4.486	12	3	RASGRP2	intronic	NA
GBM_A_T1--6	chr11:64496588	G	A	15	0.533	7	29.143	8.050	8	27.000	7.838	5	4	RASGRP2	intronic	NA
GBM_A_T1--7	chr11:64496588	G	A	32	0.312	22	29.682	7.121	10	31.000	4.082	14	8	RASGRP2	intronic	NA
GBM_A_T1--8	chr11:64496588	G	A	19	0.263	14	30.214	4.677	5	24.400	8.325	9	2	RASGRP2	intronic	NA
GBM_A_T1--GL	chr11:64496588	G	NA	58	0	58	31.741	5.492	0	0	0	46	0	RASGRP2	intronic	NA
GBM_A_T1--1	chr11:6648891	G	NA	18	0	18	37.556	4.668	0	0	0	17	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr11:6648891	G	NA	15	0	15	36.733	5.713	0	0	0	14	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr11:6648891	G	NA	22	0	22	35.955	3.169	0	0	0	21	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr11:6648891	G	NA	12	0	12	38.083	3.147	0	0	0	12	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr11:6648891	G	T	16	0.188	13	35.615	6.449	3	38.333	3.786	12	3	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr11:6648891	G	NA	23	0	23	37.217	2.540	0	0	0	23	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr11:6648891	G	NA	16	0	16	35.562	9.085	0	0	0	14	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr11:6648891	G	NA	23	0	23	36.652	6.139	0	0	0	21	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr11:6648891	G	NA	55	0	55	35.600	6.130	0	0	0	48	0	DCHS1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:6964440	C	NA	24	0	24	37.917	4.343	0	0	0	22	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr11:6964440	C	A	12	0.250	9	37.222	3.346	3	39.333	2.887	9	3	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr11:6964440	C	NA	29	0	29	37.552	2.443	0	0	0	29	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr11:6964440	C	NA	24	0	24	37.333	6.709	0	0	0	23	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr11:6964440	C	NA	19	0	19	35.947	4.453	0	0	0	18	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr11:6964440	C	NA	22	0	22	37.682	3.884	0	0	0	21	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr11:6964440	C	NA	18	0	18	36.056	6.005	0	0	0	16	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr11:6964440	C	A	30	0.067	28	34.393	6.630	2	36.000	1.414	24	2	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr11:6964440	C	NA	52	0	52	36.173	3.682	0	0	0	49	0	ZNF215	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:71146522	G	NA	64	0	64	35.297	5.181	0	0	0	57	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr11:71146522	G	NA	46	0	46	36.826	2.893	0	0	0	46	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr11:71146522	G	NA	75	0	75	35.773	4.392	0	0	0	71	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr11:71146522	G	NA	68	0	67	36.254	4.597	0	0	0	64	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr11:71146522	G	NA	60	0	60	35.367	4.566	0	0	0	57	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr11:71146522	G	NA	86	0	85	35.200	4.413	0	0	0	76	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr11:71146522	G	A	105	0.581	44	36.636	3.603	61	35.033	5.586	42	56	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr11:71146522	G	NA	99	0	99	34.859	5.141	0	0	0	84	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr11:71146522	G	NA	186	0	186	34.059	6.117	0	0	0	148	0	DHCR7	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:17266403	C	NA	23	0	23	36.609	2.759	0	0	0	23	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--2	chr1:17266403	C	A	10	0.300	7	36.571	6.425	3	34.000	6.557	6	2	CROCC	exonic	synonymous_SNV
GBM_A_T1--3	chr1:17266403	C	NA	41	0	41	36.098	3.632	0	0	0	40	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--4	chr1:17266403	C	NA	11	0	11	35.455	5.922	0	0	0	9	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--5	chr1:17266403	C	NA	34	0	34	34.618	6.805	0	0	0	30	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--6	chr1:17266403	C	NA	24	0	24	35.875	3.837	0	0	0	23	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--7	chr1:17266403	C	A	37	0.027	36	33.472	8.126	1	41.000	0.000	30	1	CROCC	exonic	synonymous_SNV
GBM_A_T1--8	chr1:17266403	C	A	37	0.027	36	36.417	4.563	1	34.000	0.000	34	1	CROCC	exonic	synonymous_SNV
GBM_A_T1--GL	chr1:17266403	C	NA	43	0	43	36.163	4.990	0	0	0	40	0	CROCC	exonic	synonymous_SNV
GBM_A_T1--1	chr1:175046699	G	A	81	0.247	61	36.361	4.131	20	37.100	4.400	59	18	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:175046699	G	A	21	0.238	16	36.438	3.577	5	35.600	4.615	16	4	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:175046699	G	A	62	0.048	59	36.186	6.312	3	37.000	2.000	56	3	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:175046699	G	A	70	0.329	47	35.255	5.507	23	36.913	2.678	40	23	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:175046699	G	A	54	0.167	45	36.533	3.181	9	37.111	2.261	44	9	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:175046699	G	A	108	0.324	73	35.260	5.645	35	36.743	3.081	66	34	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:175046699	G	A	76	0.461	41	35.707	5.984	35	35.771	4.741	38	31	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:175046699	G	A	92	0.359	59	36.508	5.767	33	34.848	5.087	54	28	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:175046699	G	NA	119	0	119	36.429	4.145	0	0	0	113	0	TNN	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:179852747	A	NA	35	0	35	36.829	6.261	0	0	0	32	0	TOR1AIP1	intronic	NA
GBM_A_T1--2	chr1:179852747	A	G	11	0.273	8	34.875	9.250	3	36.000	3.606	7	3	TOR1AIP1	intronic	NA
GBM_A_T1--3	chr1:179852747	A	NA	36	0	36	36.917	3.516	0	0	0	34	0	TOR1AIP1	intronic	NA
GBM_A_T1--4	chr1:179852747	A	NA	29	0	29	38.000	2.878	0	0	0	29	0	TOR1AIP1	intronic	NA
GBM_A_T1--5	chr1:179852747	A	NA	21	0	21	35.857	4.293	0	0	0	20	0	TOR1AIP1	intronic	NA
GBM_A_T1--6	chr1:179852747	A	NA	64	0	64	35.828	5.233	0	0	0	58	0	TOR1AIP1	intronic	NA
GBM_A_T1--7	chr1:179852747	A	NA	47	0	47	34.979	5.032	0	0	0	42	0	TOR1AIP1	intronic	NA
GBM_A_T1--8	chr1:179852747	A	NA	51	0	51	35.608	5.734	0	0	0	48	0	TOR1AIP1	intronic	NA
GBM_A_T1--GL	chr1:179852747	A	NA	42	0	42	35.310	5.650	0	0	0	39	0	TOR1AIP1	intronic	NA
GBM_A_T1--1	chr1:181689565	C	NA	17	0	17	36.000	4.228	0	0	0	16	0	CACNA1E	intronic	NA
GBM_A_T1--2	chr1:181689565	C	NA	13	0	13	36.308	3.473	0	0	0	12	0	CACNA1E	intronic	NA
GBM_A_T1--3	chr1:181689565	C	NA	21	0	21	35.762	3.254	0	0	0	20	0	CACNA1E	intronic	NA
GBM_A_T1--4	chr1:181689565	C	A	17	0.176	14	34.357	5.692	3	40.667	0.577	13	3	CACNA1E	intronic	NA
GBM_A_T1--5	chr1:181689565	C	NA	15	0	15	36.400	3.814	0	0	0	14	0	CACNA1E	intronic	NA
GBM_A_T1--6	chr1:181689565	C	NA	12	0	11	36.818	2.926	0	0	0	11	0	CACNA1E	intronic	NA
GBM_A_T1--7	chr1:181689565	C	NA	24	0	24	35.333	3.818	0	0	0	23	0	CACNA1E	intronic	NA
GBM_A_T1--8	chr1:181689565	C	NA	25	0	25	37.600	2.887	0	0	0	25	0	CACNA1E	intronic	NA
GBM_A_T1--GL	chr1:181689565	C	NA	43	0	43	35.535	6.493	0	0	0	40	0	CACNA1E	intronic	NA
GBM_A_T1--1	chr11:85364994	T	NA	31	0	31	36.774	4.145	0	0	0	29	0	TMEM126A	intronic	NA
GBM_A_T1--2	chr11:85364994	T	A	10	0.300	7	38.857	2.116	3	38.333	3.055	7	3	TMEM126A	intronic	NA
GBM_A_T1--3	chr11:85364994	T	NA	30	0	29	36.207	4.443	0	0	0	27	0	TMEM126A	intronic	NA
GBM_A_T1--4	chr11:85364994	T	NA	18	0	18	36.222	5.408	0	0	0	15	0	TMEM126A	intronic	NA
GBM_A_T1--5	chr11:85364994	T	NA	30	0	30	37.667	3.994	0	0	0	27	0	TMEM126A	intronic	NA
GBM_A_T1--6	chr11:85364994	T	NA	34	0	34	36.353	3.667	0	0	0	32	0	TMEM126A	intronic	NA
GBM_A_T1--7	chr11:85364994	T	NA	32	0	32	36.469	3.282	0	0	0	31	0	TMEM126A	intronic	NA
GBM_A_T1--8	chr11:85364994	T	NA	53	0	52	36.269	4.371	0	0	0	49	0	TMEM126A	intronic	NA
GBM_A_T1--GL	chr11:85364994	T	NA	95	0	95	35.632	5.663	0	0	0	86	0	TMEM126A	intronic	NA
GBM_A_T1--1	chr1:185985345	A	NA	22	0	22	37.545	2.956	0	0	0	22	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:185985345	A	NA	14	0	14	38.786	3.093	0	0	0	14	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:185985345	A	NA	19	0	19	38.000	4.509	0	0	0	18	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:185985345	A	NA	29	0	29	37.862	4.635	0	0	0	27	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:185985345	A	NA	17	0	17	39.941	2.045	0	0	0	17	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:185985345	A	NA	23	0	23	37.739	3.911	0	0	0	22	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:185985345	A	T	28	0.429	16	37.750	3.661	12	36.250	5.396	16	11	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:185985345	A	T	41	0.024	40	37.925	5.274	1	41.000	0.000	37	1	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:185985345	A	NA	53	0	53	37.208	4.928	0	0	0	51	0	HMCN1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr11:89407178	C	T	40	0.075	37	36.243	3.183	3	35.667	2.309	36	3	FOLH1B	intronic	NA
GBM_A_T1--2	chr11:89407178	C	T	15	0.200	11	37.000	3.550	3	36.667	2.887	11	3	FOLH1B	intronic	NA
GBM_A_T1--3	chr11:89407178	C	NA	22	0	21	35.476	3.092	0	0	0	21	0	FOLH1B	intronic	NA
GBM_A_T1--4	chr11:89407178	C	T	23	0.130	19	37.421	3.548	3	35.000	3.606	18	3	FOLH1B	intronic	NA
GBM_A_T1--5	chr11:89407178	C	NA	25	0	25	33.360	6.486	0	0	0	20	0	FOLH1B	intronic	NA
GBM_A_T1--6	chr11:89407178	C	T	53	0.226	39	33.615	4.050	12	32.250	8.935	32	10	FOLH1B	intronic	NA
GBM_A_T1--7	chr11:89407178	C	T	33	0.030	32	32.719	7.163	1	39.000	0.000	25	1	FOLH1B	intronic	NA
GBM_A_T1--8	chr11:89407178	C	T	49	0.082	45	33.222	6.459	4	36.250	5.500	39	3	FOLH1B	intronic	NA
GBM_A_T1--GL	chr11:89407178	C	NA	44	0	43	34.279	3.990	0	0	0	39	0	FOLH1B	intronic	NA
GBM_A_T1--1	chr1:19216614	C	NA	28	0	27	37.296	2.933	0	0	0	27	0	ALDH4A1	intronic	NA
GBM_A_T1--2	chr1:19216614	C	NA	17	0	17	37.294	2.710	0	0	0	17	0	ALDH4A1	intronic	NA
GBM_A_T1--3	chr1:19216614	C	NA	29	0	29	36.241	2.948	0	0	0	29	0	ALDH4A1	intronic	NA
GBM_A_T1--4	chr1:19216614	C	NA	27	0	27	36.704	3.196	0	0	0	27	0	ALDH4A1	intronic	NA
GBM_A_T1--5	chr1:19216614	C	NA	23	0	23	35.130	3.853	0	0	0	22	0	ALDH4A1	intronic	NA
GBM_A_T1--6	chr1:19216614	C	A	32	0.031	31	33.032	7.387	1	33.000	0.000	27	1	ALDH4A1	intronic	NA
GBM_A_T1--7	chr1:19216614	C	A	27	0.519	13	36.538	3.017	14	35.714	5.283	13	12	ALDH4A1	intronic	NA
GBM_A_T1--8	chr1:19216614	C	A	38	0.053	36	35.500	5.051	2	28.000	15.556	34	1	ALDH4A1	intronic	NA
GBM_A_T1--GL	chr1:19216614	C	NA	74	0	74	33.811	6.137	0	0	0	65	0	ALDH4A1	intronic	NA
GBM_A_T1--1	chr1:197391156	C	NA	20	0	20	37.100	4.154	0	0	0	19	0	CRB1	intronic	NA
GBM_A_T1--2	chr1:197391156	C	NA	10	0	10	36.300	3.743	0	0	0	10	0	CRB1	intronic	NA
GBM_A_T1--3	chr1:197391156	C	NA	14	0	14	36.786	3.867	0	0	0	13	0	CRB1	intronic	NA
GBM_A_T1--4	chr1:197391156	C	NA	11	0	11	37.000	4.219	0	0	0	10	0	CRB1	intronic	NA
GBM_A_T1--5	chr1:197391156	C	NA	15	0	15	36.600	4.050	0	0	0	14	0	CRB1	intronic	NA
GBM_A_T1--6	chr1:197391156	C	A	20	0.200	16	34.625	8.123	4	37.000	3.559	15	4	CRB1	intronic	NA
GBM_A_T1--7	chr1:197391156	C	NA	25	0	25	34.320	5.573	0	0	0	22	0	CRB1	intronic	NA
GBM_A_T1--8	chr1:197391156	C	NA	18	0	18	34.389	7.830	0	0	0	15	0	CRB1	intronic	NA
GBM_A_T1--GL	chr1:197391156	C	NA	36	0	36	34.722	6.839	0	0	0	31	0	CRB1	intronic	NA
GBM_A_T1--1	chr1:19935030	C	NA	25	0	25	36.920	2.768	0	0	0	25	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--2	chr1:19935030	C	NA	15	0	15	38.133	3.399	0	0	0	15	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--3	chr1:19935030	C	NA	17	0	17	37.647	2.234	0	0	0	17	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--4	chr1:19935030	C	NA	14	0	14	37.000	2.602	0	0	0	14	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--5	chr1:19935030	C	A	18	0.167	15	34.267	7.196	3	38.333	3.055	12	3	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--6	chr1:19935030	C	NA	26	0	26	35.308	3.496	0	0	0	24	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--7	chr1:19935030	C	NA	26	0	26	36.615	2.858	0	0	0	26	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--8	chr1:19935030	C	NA	27	0	27	35.778	2.276	0	0	0	27	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--GL	chr1:19935030	C	NA	52	0	52	36.154	5.263	0	0	0	50	0	RPS14P3	ncRNA_exonic	NA
GBM_A_T1--1	chr1:202092640	C	NA	35	0	35	37.800	2.857	0	0	0	35	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--2	chr1:202092640	C	NA	13	0	13	35.846	4.488	0	0	0	12	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--3	chr1:202092640	C	NA	34	0	34	37.353	3.741	0	0	0	33	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--4	chr1:202092640	C	NA	34	0	34	36.353	5.239	0	0	0	32	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--5	chr1:202092640	C	A	17	0.176	14	35.786	4.191	3	36.667	5.774	14	3	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--6	chr1:202092640	C	NA	40	0	40	34.625	5.555	0	0	0	32	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--7	chr1:202092640	C	NA	34	0	34	32.765	7.373	0	0	0	29	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--8	chr1:202092640	C	NA	51	0	51	34.745	4.931	0	0	0	41	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--GL	chr1:202092640	C	NA	68	0	68	34.426	5.629	0	0	0	58	0	GPR37L1	exonic	stopgain_SNV
GBM_A_T1--1	chr1:202287624	C	NA	30	0	30	36.867	3.309	0	0	0	30	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--2	chr1:202287624	C	A	18	0.167	15	35.733	6.375	3	38.000	1.732	14	3	LGR6	exonic	synonymous_SNV
GBM_A_T1--3	chr1:202287624	C	A	31	0.032	30	36.700	3.334	1	35.000	0.000	30	1	LGR6	exonic	synonymous_SNV
GBM_A_T1--4	chr1:202287624	C	NA	34	0	34	36.088	3.712	0	0	0	33	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--5	chr1:202287624	C	NA	40	0	40	34.775	6.216	0	0	0	34	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--6	chr1:202287624	C	NA	34	0	34	35.441	3.526	0	0	0	31	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--7	chr1:202287624	C	NA	43	0	43	35.512	4.002	0	0	0	40	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--8	chr1:202287624	C	NA	39	0	39	34.692	4.948	0	0	0	33	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--GL	chr1:202287624	C	NA	57	0	57	35.140	5.191	0	0	0	53	0	LGR6	exonic	synonymous_SNV
GBM_A_T1--1	chr1:204938086	C	A	27	0.037	26	36.385	3.453	1	40.000	0.000	26	1	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:204938086	C	A	12	0.250	9	36.444	4.558	3	38.333	2.887	8	3	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:204938086	C	NA	31	0	31	35.097	5.218	0	0	0	27	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:204938086	C	NA	27	0	27	36.370	4.993	0	0	0	26	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:204938086	C	NA	37	0	37	36.865	3.093	0	0	0	36	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:204938086	C	NA	57	0	54	34.722	6.833	0	0	0	47	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:204938086	C	NA	33	0	33	35.667	3.966	0	0	0	32	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:204938086	C	NA	43	0	43	36.163	4.128	0	0	0	41	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:204938086	C	NA	52	0	52	34.481	7.106	0	0	0	45	0	NFASC	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:206666284	T	NA	17	0	17	36.118	4.484	0	0	0	16	0	IKBKE	intronic	NA
GBM_A_T1--2	chr1:206666284	T	NA	12	0	12	36.250	4.159	0	0	0	11	0	IKBKE	intronic	NA
GBM_A_T1--3	chr1:206666284	T	NA	17	0	17	35.471	3.573	0	0	0	16	0	IKBKE	intronic	NA
GBM_A_T1--4	chr1:206666284	T	NA	21	0	21	37.238	3.015	0	0	0	21	0	IKBKE	intronic	NA
GBM_A_T1--5	chr1:206666284	T	A	22	0.182	17	35.882	4.768	4	34.000	1.414	16	4	IKBKE	intronic	NA
GBM_A_T1--6	chr1:206666284	T	NA	26	0	26	33.038	5.779	0	0	0	22	0	IKBKE	intronic	NA
GBM_A_T1--7	chr1:206666284	T	NA	19	0	19	35.737	5.097	0	0	0	17	0	IKBKE	intronic	NA
GBM_A_T1--8	chr1:206666284	T	NA	25	0	25	36.200	3.440	0	0	0	25	0	IKBKE	intronic	NA
GBM_A_T1--GL	chr1:206666284	T	NA	41	0	41	34.902	4.883	0	0	0	38	0	IKBKE	intronic	NA
GBM_A_T1--1	chr12:101790346	G	NA	18	0	18	38.167	3.400	0	0	0	18	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:101790346	G	T	11	0.273	8	38.625	2.925	3	38.667	3.215	8	3	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:101790346	G	NA	18	0	18	37.556	2.479	0	0	0	18	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:101790346	G	NA	22	0	22	36.909	4.908	0	0	0	20	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:101790346	G	NA	15	0	15	38.067	2.576	0	0	0	15	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:101790346	G	NA	32	0	32	38.031	3.021	0	0	0	32	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:101790346	G	NA	22	0	22	37.545	2.841	0	0	0	22	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:101790346	G	NA	25	0	25	37.720	2.993	0	0	0	25	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:101790346	G	NA	51	0	51	36.510	4.374	0	0	0	48	0	ARL1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:21050583	C	NA	28	0	28	37.643	3.325	0	0	0	28	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--2	chr1:21050583	C	A	15	0.200	11	36.636	2.908	3	35.000	9.539	11	2	SH2D5	exonic	synonymous_SNV
GBM_A_T1--3	chr1:21050583	C	NA	14	0	14	36.429	3.777	0	0	0	13	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--4	chr1:21050583	C	NA	14	0	14	39.500	1.990	0	0	0	14	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--5	chr1:21050583	C	NA	19	0	19	37.632	3.919	0	0	0	18	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--6	chr1:21050583	C	NA	19	0	19	37.000	3.575	0	0	0	19	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--7	chr1:21050583	C	NA	26	0	26	38.115	4.043	0	0	0	25	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--8	chr1:21050583	C	NA	20	0	20	37.100	6.078	0	0	0	19	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--GL	chr1:21050583	C	NA	46	0	46	37.457	2.934	0	0	0	46	0	SH2D5	exonic	synonymous_SNV
GBM_A_T1--1	chr12:105444411	A	G	21	0.095	18	36.944	3.152	2	35.000	0.000	18	2	ALDH1L2	intronic	NA
GBM_A_T1--2	chr12:105444411	A	G	10	0.300	6	35.000	6.229	3	34.000	1.732	5	3	ALDH1L2	intronic	NA
GBM_A_T1--3	chr12:105444411	A	NA	25	0	25	36.240	4.512	0	0	0	24	0	ALDH1L2	intronic	NA
GBM_A_T1--4	chr12:105444411	A	G	25	0.040	24	36.083	3.412	1	34.000	0.000	24	1	ALDH1L2	intronic	NA
GBM_A_T1--5	chr12:105444411	A	G	22	0.045	21	34.524	4.936	1	34.000	0.000	19	1	ALDH1L2	intronic	NA
GBM_A_T1--6	chr12:105444411	A	G	29	0.034	28	32.250	8.017	1	34.000	0.000	22	1	ALDH1L2	intronic	NA
GBM_A_T1--7	chr12:105444411	A	NA	11	0	11	35.091	4.206	0	0	0	10	0	ALDH1L2	intronic	NA
GBM_A_T1--8	chr12:105444411	A	NA	28	0	28	36.250	3.146	0	0	0	28	0	ALDH1L2	intronic	NA
GBM_A_T1--GL	chr12:105444411	A	NA	43	0	43	34.070	5.138	0	0	0	35	0	ALDH1L2	intronic	NA
GBM_A_T1--1	chr12:113444305	A	NA	25	0	25	36.480	6.545	0	0	0	24	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:113444305	A	NA	11	0	11	38.000	3.033	0	0	0	11	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:113444305	A	G	17	0.176	14	32.357	8.205	3	37.333	3.786	12	3	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:113444305	A	NA	26	0	26	36.192	3.086	0	0	0	26	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:113444305	A	NA	25	0	25	36.040	3.155	0	0	0	24	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:113444305	A	NA	39	0	39	33.000	8.013	0	0	0	30	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:113444305	A	NA	18	0	18	34.611	4.474	0	0	0	16	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:113444305	A	NA	41	0	41	35.854	3.609	0	0	0	38	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:113444305	A	NA	55	0	55	33.400	8.119	0	0	0	47	0	OAS2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:117665521	C	NA	21	0	21	36.810	3.060	0	0	0	21	0	NOS1	intronic	NA
GBM_A_T1--2	chr12:117665521	C	NA	10	0	10	34.200	4.917	0	0	0	9	0	NOS1	intronic	NA
GBM_A_T1--3	chr12:117665521	C	NA	28	0	28	36.750	4.169	0	0	0	26	0	NOS1	intronic	NA
GBM_A_T1--4	chr12:117665521	C	A	18	0.222	14	36.214	2.607	4	37.750	3.202	14	4	NOS1	intronic	NA
GBM_A_T1--5	chr12:117665521	C	NA	18	0	18	34.944	4.137	0	0	0	17	0	NOS1	intronic	NA
GBM_A_T1--6	chr12:117665521	C	NA	29	0	29	35.034	4.084	0	0	0	26	0	NOS1	intronic	NA
GBM_A_T1--7	chr12:117665521	C	NA	15	0	15	33.733	4.743	0	0	0	14	0	NOS1	intronic	NA
GBM_A_T1--8	chr12:117665521	C	NA	12	0	12	36.000	4.045	0	0	0	12	0	NOS1	intronic	NA
GBM_A_T1--GL	chr12:117665521	C	NA	68	0	67	34.701	6.747	0	0	0	63	0	NOS1	intronic	NA
GBM_A_T1--1	chr12:125618643	C	NA	26	0	26	35.192	5.091	0	0	0	24	0	AACS	intronic	NA
GBM_A_T1--2	chr12:125618643	C	NA	11	0	11	36.818	3.628	0	0	0	11	0	AACS	intronic	NA
GBM_A_T1--3	chr12:125618643	C	NA	37	0	37	36.541	3.271	0	0	0	36	0	AACS	intronic	NA
GBM_A_T1--4	chr12:125618643	C	NA	23	0	23	37.304	3.125	0	0	0	23	0	AACS	intronic	NA
GBM_A_T1--5	chr12:125618643	C	NA	15	0	15	37.733	3.535	0	0	0	14	0	AACS	intronic	NA
GBM_A_T1--6	chr12:125618643	C	NA	36	0	36	35.750	3.573	0	0	0	33	0	AACS	intronic	NA
GBM_A_T1--7	chr12:125618643	C	G	31	0.323	21	34.714	6.365	10	37.400	3.921	17	9	AACS	intronic	NA
GBM_A_T1--8	chr12:125618643	C	NA	38	0	38	34.289	4.026	0	0	0	35	0	AACS	intronic	NA
GBM_A_T1--GL	chr12:125618643	C	NA	46	0	46	34.370	6.151	0	0	0	41	0	AACS	intronic	NA
GBM_A_T1--1	chr12:22063251	C	A	73	0.123	64	34.766	9.297	9	33.778	1.856	50	9	ABCC9	intronic	NA
GBM_A_T1--2	chr12:22063251	C	A	32	0.156	27	35.074	8.788	5	35.800	1.789	22	5	ABCC9	intronic	NA
GBM_A_T1--3	chr12:22063251	C	A	65	0.092	59	33.915	8.528	6	35.000	1.265	43	6	ABCC9	intronic	NA
GBM_A_T1--4	chr12:22063251	C	A	45	0.067	42	34.190	10.107	3	33.333	2.887	34	3	ABCC9	intronic	NA
GBM_A_T1--5	chr12:22063251	C	A	36	0.222	28	35.607	7.932	8	34.750	2.252	23	8	ABCC9	intronic	NA
GBM_A_T1--6	chr12:22063251	C	A	89	0.112	79	33.684	9.965	10	30.500	9.229	62	9	ABCC9	intronic	NA
GBM_A_T1--7	chr12:22063251	C	NA	78	0	77	35.584	7.498	0	0	0	65	0	ABCC9	intronic	NA
GBM_A_T1--8	chr12:22063251	C	A	87	0.069	81	33.914	9.365	6	29.500	11.554	66	5	ABCC9	intronic	NA
GBM_A_T1--GL	chr12:22063251	C	NA	70	0	66	33.152	9.269	0	0	0	50	0	ABCC9	intronic	NA
GBM_A_T1--1	chr12:31354112	A	NA	84	0	84	37.143	5.078	0	0	0	80	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--2	chr12:31354112	A	G	27	0.222	21	38.905	2.385	6	39.000	1.549	21	6	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--3	chr12:31354112	A	NA	81	0	80	37.337	4.009	0	0	0	76	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--4	chr12:31354112	A	NA	89	0	89	37.775	3.506	0	0	0	86	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--5	chr12:31354112	A	NA	53	0	53	38.340	2.895	0	0	0	52	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--6	chr12:31354112	A	NA	105	0	105	35.705	6.125	0	0	0	92	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--7	chr12:31354112	A	NA	75	0	75	37.160	4.195	0	0	0	72	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--8	chr12:31354112	A	NA	111	0	110	36.345	5.342	0	0	0	102	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--GL	chr12:31354112	A	NA	137	0	136	36.610	4.571	0	0	0	128	0	DDX11(dist=96387),FAM60A(dist=79408)	intergenic	NA
GBM_A_T1--1	chr1:232626760	C	NA	37	0	37	36.892	4.800	0	0	0	34	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:232626760	C	A	19	0.158	16	35.312	7.821	3	39.000	3.464	15	3	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:232626760	C	NA	27	0	27	37.111	4.291	0	0	0	25	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:232626760	C	NA	40	0	40	38.175	2.925	0	0	0	40	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:232626760	C	NA	27	0	27	36.963	2.638	0	0	0	27	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:232626760	C	NA	58	0	58	36.983	4.232	0	0	0	54	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:232626760	C	NA	60	0	60	37.000	3.580	0	0	0	57	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:232626760	C	NA	51	0	51	37.157	4.993	0	0	0	50	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:232626760	C	NA	63	0	63	35.905	5.861	0	0	0	58	0	SIPA1L2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:32907937	A	C	19	0.316	13	37.308	3.225	6	39.000	2.530	13	6	YARS2	intronic	NA
GBM_A_T1--2	chr12:32907937	A	NA	13	0	13	37.077	4.609	0	0	0	12	0	YARS2	intronic	NA
GBM_A_T1--3	chr12:32907937	A	NA	14	0	14	37.071	5.298	0	0	0	12	0	YARS2	intronic	NA
GBM_A_T1--4	chr12:32907937	A	C	15	0.267	11	38.727	2.494	4	38.500	2.646	11	4	YARS2	intronic	NA
GBM_A_T1--5	chr12:32907937	A	NA	16	0	15	36.133	8.114	0	0	0	14	0	YARS2	intronic	NA
GBM_A_T1--6	chr12:32907937	A	C	20	0.200	16	34.062	7.912	4	37.250	3.500	13	4	YARS2	intronic	NA
GBM_A_T1--7	chr12:32907937	A	C	15	0.067	14	36.214	4.246	1	40.000	0.000	14	1	YARS2	intronic	NA
GBM_A_T1--8	chr12:32907937	A	C	18	0.222	14	37.643	3.692	4	36.250	3.775	14	4	YARS2	intronic	NA
GBM_A_T1--GL	chr12:32907937	A	NA	43	0	43	36.395	5.782	0	0	0	39	0	YARS2	intronic	NA
GBM_A_T1--1	chr1:247150354	C	NA	21	0	21	37.143	6.011	0	0	0	19	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:247150354	C	NA	17	0	17	38.941	2.904	0	0	0	17	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:247150354	C	NA	17	0	17	39.529	3.125	0	0	0	17	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:247150354	C	NA	20	0	20	37.450	3.634	0	0	0	19	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:247150354	C	A	19	0.158	16	39.312	2.243	3	39.333	2.887	16	3	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:247150354	C	NA	29	0	29	37.621	5.288	0	0	0	26	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:247150354	C	NA	33	0	33	39.455	2.425	0	0	0	33	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:247150354	C	NA	30	0	30	38.900	2.325	0	0	0	30	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:247150354	C	NA	74	0	74	37.838	4.382	0	0	0	70	0	ZNF695	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:49883239	C	NA	41	0	41	38.195	3.809	0	0	0	39	0	SPATS2	intronic	NA
GBM_A_T1--2	chr12:49883239	C	NA	12	0	12	35.833	4.469	0	0	0	10	0	SPATS2	intronic	NA
GBM_A_T1--3	chr12:49883239	C	NA	31	0	31	37.774	2.642	0	0	0	31	0	SPATS2	intronic	NA
GBM_A_T1--4	chr12:49883239	C	NA	30	0	30	38.300	3.631	0	0	0	29	0	SPATS2	intronic	NA
GBM_A_T1--5	chr12:49883239	C	NA	17	0	17	39.588	1.583	0	0	0	17	0	SPATS2	intronic	NA
GBM_A_T1--6	chr12:49883239	C	NA	45	0	45	37.467	4.703	0	0	0	43	0	SPATS2	intronic	NA
GBM_A_T1--7	chr12:49883239	C	A	21	0.238	16	37.812	4.053	5	36.600	5.899	15	4	SPATS2	intronic	NA
GBM_A_T1--8	chr12:49883239	C	NA	47	0	47	37.106	3.930	0	0	0	44	0	SPATS2	intronic	NA
GBM_A_T1--GL	chr12:49883239	C	NA	64	0	64	37.250	5.198	0	0	0	57	0	SPATS2	intronic	NA
GBM_A_T1--1	chr12:56711392	G	C	53	0.377	33	36.545	4.258	20	38.250	1.860	32	20	PAN2	UTR3	NA
GBM_A_T1--2	chr12:56711392	G	C	35	0.629	13	36.308	2.689	22	35.909	6.023	13	20	PAN2	UTR3	NA
GBM_A_T1--3	chr12:56711392	G	C	66	0.061	62	36.903	4.100	4	39.500	1.732	59	4	PAN2	UTR3	NA
GBM_A_T1--4	chr12:56711392	G	C	58	0.241	44	36.909	2.884	14	36.143	4.016	44	14	PAN2	UTR3	NA
GBM_A_T1--5	chr12:56711392	G	C	47	0.106	42	36.714	3.638	5	37.600	1.949	40	5	PAN2	UTR3	NA
GBM_A_T1--6	chr12:56711392	G	C	72	0.403	43	36.512	3.750	29	36.931	3.116	42	28	PAN2	UTR3	NA
GBM_A_T1--7	chr12:56711392	G	C	64	0.672	21	35.714	7.295	43	35.349	5.268	20	40	PAN2	UTR3	NA
GBM_A_T1--8	chr12:56711392	G	C	73	0.274	53	35.189	5.582	20	33.200	5.367	49	16	PAN2	UTR3	NA
GBM_A_T1--GL	chr12:56711392	G	NA	94	0	94	35.436	5.184	0	0	0	85	0	PAN2	UTR3	NA
GBM_A_T1--1	chr12:56718480	A	G	15	0.200	12	36.833	2.290	3	40.000	1.000	12	3	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:56718480	A	NA	19	0	19	37.737	3.016	0	0	0	19	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:56718480	A	NA	27	0	27	37.889	3.142	0	0	0	27	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:56718480	A	NA	19	0	19	38.579	2.524	0	0	0	19	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:56718480	A	G	26	0.038	25	37.880	2.848	1	35.000	0.000	25	1	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:56718480	A	NA	39	0	39	36.308	5.750	0	0	0	35	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:56718480	A	NA	25	0	25	35.680	5.928	0	0	0	23	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:56718480	A	NA	13	0	13	37.769	4.045	0	0	0	12	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:56718480	A	NA	40	0	40	36.200	4.410	0	0	0	38	0	PAN2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:56818803	G	NA	27	0	27	37.037	2.794	0	0	0	27	0	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:56818803	G	A	12	0.083	11	36.636	2.908	1	35.000	0.000	11	1	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:56818803	G	NA	25	0	25	34.560	8.515	0	0	0	23	0	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:56818803	G	A	17	0.235	13	33.538	8.412	4	35.500	1.732	12	4	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:56818803	G	A	22	0.045	21	33.714	6.965	1	35.000	0.000	18	1	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:56818803	G	A	22	0.045	21	33.619	6.895	1	35.000	0.000	17	1	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:56818803	G	NA	31	0	31	36.032	3.545	0	0	0	29	0	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:56818803	G	A	27	0.037	26	35.577	3.921	1	31.000	0.000	25	1	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:56818803	G	NA	61	0	61	35.721	4.294	0	0	0	57	0	TIMELESS	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:57628055	T	NA	28	0	28	36.036	5.487	0	0	0	26	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:57628055	T	NA	11	0	11	35.818	6.030	0	0	0	10	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:57628055	T	NA	39	0	39	36.103	5.766	0	0	0	37	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:57628055	T	NA	29	0	29	37.621	3.133	0	0	0	28	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:57628055	T	C	15	0.200	12	36.500	3.966	3	34.000	7.937	11	2	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:57628055	T	NA	34	0	34	36.412	3.978	0	0	0	31	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:57628055	T	NA	49	0	49	35.878	5.015	0	0	0	44	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:57628055	T	NA	30	0	30	35.467	6.601	0	0	0	27	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:57628055	T	NA	44	0	44	35.386	5.213	0	0	0	40	0	SHMT2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:58158181	C	NA	81	0	81	37.654	4.904	0	0	0	76	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--2	chr12:58158181	C	T	67	0.119	59	36.915	4.833	8	38.750	2.252	55	8	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--3	chr12:58158181	C	NA	92	0	92	36.554	5.227	0	0	0	88	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--4	chr12:58158181	C	NA	81	0	81	38.741	3.216	0	0	0	80	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--5	chr12:58158181	C	NA	81	0	81	37.000	4.701	0	0	0	75	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--6	chr12:58158181	C	NA	111	0	111	36.622	5.414	0	0	0	104	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--7	chr12:58158181	C	NA	134	0	134	36.679	4.593	0	0	0	126	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--8	chr12:58158181	C	NA	106	0	105	36.448	5.724	0	0	0	99	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--GL	chr12:58158181	C	NA	190	0	190	36.584	5.372	0	0	0	177	0	CYP27B1	exonic	synonymous_SNV
GBM_A_T1--1	chr12:62931399	C	A	33	0.030	32	38.469	2.590	1	35.000	0.000	32	1	MON2	exonic	synonymous_SNV
GBM_A_T1--2	chr12:62931399	C	A	14	0.214	11	38.182	2.601	3	37.667	3.215	11	3	MON2	exonic	synonymous_SNV
GBM_A_T1--3	chr12:62931399	C	NA	29	0	29	37.034	3.122	0	0	0	28	0	MON2	exonic	synonymous_SNV
GBM_A_T1--4	chr12:62931399	C	NA	35	0	35	37.686	2.742	0	0	0	35	0	MON2	exonic	synonymous_SNV
GBM_A_T1--5	chr12:62931399	C	NA	15	0	15	37.800	1.699	0	0	0	15	0	MON2	exonic	synonymous_SNV
GBM_A_T1--6	chr12:62931399	C	A	66	0.015	65	37.169	3.625	1	34.000	0.000	62	1	MON2	exonic	synonymous_SNV
GBM_A_T1--7	chr12:62931399	C	NA	49	0	49	36.490	4.233	0	0	0	46	0	MON2	exonic	synonymous_SNV
GBM_A_T1--8	chr12:62931399	C	NA	30	0	30	36.067	5.172	0	0	0	28	0	MON2	exonic	synonymous_SNV
GBM_A_T1--GL	chr12:62931399	C	NA	57	0	57	37.211	5.112	0	0	0	55	0	MON2	exonic	synonymous_SNV
GBM_A_T1--1	chr12:6586943	C	T	10	0.300	7	37.286	3.904	3	33.000	3.464	7	3	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--2	chr12:6586943	C	NA	17	0	17	37.294	3.869	0	0	0	17	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--3	chr12:6586943	C	NA	18	0	18	34.611	7.830	0	0	0	14	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--4	chr12:6586943	C	NA	18	0	18	34.722	7.676	0	0	0	15	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--5	chr12:6586943	C	NA	22	0	22	37.273	3.355	0	0	0	22	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--6	chr12:6586943	C	NA	28	0	28	35.143	7.080	0	0	0	24	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--7	chr12:6586943	C	NA	49	0	49	36.163	4.771	0	0	0	43	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--8	chr12:6586943	C	NA	27	0	27	35.037	7.439	0	0	0	23	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--GL	chr12:6586943	C	NA	50	0	50	36.800	4.857	0	0	0	47	0	VAMP1(dist=7100),MRPL51(dist=14373)	intergenic	NA
GBM_A_T1--1	chr1:27215464	C	A	18	0.111	16	35.875	6.043	2	36.500	2.121	15	2	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:27215464	C	NA	16	0	16	35.562	3.540	0	0	0	16	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:27215464	C	NA	20	0	20	36.100	4.291	0	0	0	18	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:27215464	C	NA	16	0	16	36.562	2.337	0	0	0	16	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:27215464	C	A	15	0.200	12	36.333	4.638	3	34.333	5.859	11	3	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:27215464	C	NA	35	0	35	36.714	4.605	0	0	0	33	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:27215464	C	NA	19	0	19	33.421	7.812	0	0	0	15	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:27215464	C	NA	22	0	22	33.273	7.166	0	0	0	19	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:27215464	C	NA	60	0	60	34.000	6.608	0	0	0	49	0	GPN2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr12:8803181	G	A	40	0.025	39	36.333	4.132	1	39.000	0.000	34	1	MFAP5	exonic	synonymous_SNV
GBM_A_T1--2	chr12:8803181	G	NA	18	0	18	34.056	9.058	0	0	0	16	0	MFAP5	exonic	synonymous_SNV
GBM_A_T1--3	chr12:8803181	G	NA	44	0	44	37.159	2.551	0	0	0	44	0	MFAP5	exonic	synonymous_SNV
GBM_A_T1--4	chr12:8803181	G	A	44	0.091	40	37.150	3.813	4	35.750	2.986	39	4	MFAP5	exonic	synonymous_SNV
GBM_A_T1--5	chr12:8803181	G	A	39	0.154	33	36.515	4.302	6	36.333	2.582	32	6	MFAP5	exonic	synonymous_SNV
GBM_A_T1--6	chr12:8803181	G	A	57	0.053	54	36.333	3.726	3	37.333	2.517	52	3	MFAP5	exonic	synonymous_SNV
GBM_A_T1--7	chr12:8803181	G	NA	55	0	55	35.927	4.438	0	0	0	52	0	MFAP5	exonic	synonymous_SNV
GBM_A_T1--8	chr12:8803181	G	A	50	0.040	48	34.771	4.843	2	35.500	2.121	42	2	MFAP5	exonic	synonymous_SNV
GBM_A_T1--GL	chr12:8803181	G	NA	69	0	69	35.841	3.433	0	0	0	63	0	MFAP5	exonic	synonymous_SNV
GBM_A_T1--1	chr12:91449857	C	NA	49	0	49	37.939	2.968	0	0	0	49	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr12:91449857	C	A	11	0.273	8	37.625	3.159	3	39.333	2.082	8	3	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr12:91449857	C	A	61	0.016	60	38.150	3.199	1	39.000	0.000	60	1	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr12:91449857	C	NA	48	0	48	36.958	4.964	0	0	0	44	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr12:91449857	C	NA	25	0	25	37.080	3.796	0	0	0	24	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr12:91449857	C	NA	54	0	54	35.537	5.171	0	0	0	48	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr12:91449857	C	NA	49	0	49	37.367	3.213	0	0	0	47	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr12:91449857	C	NA	83	0	83	37.422	4.194	0	0	0	79	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr12:91449857	C	NA	130	0	129	36.264	5.771	0	0	0	117	0	KERA	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr13:20000072	G	T	22	0.364	14	38.714	2.268	8	35.000	3.817	14	7	TPTE2	intronic	NA
GBM_A_T1--2	chr13:20000072	G	NA	14	0	14	37.571	2.821	0	0	0	14	0	TPTE2	intronic	NA
GBM_A_T1--3	chr13:20000072	G	NA	30	0	30	36.667	3.968	0	0	0	30	0	TPTE2	intronic	NA
GBM_A_T1--4	chr13:20000072	G	T	31	0.065	29	37.310	3.163	2	37.000	0.000	29	2	TPTE2	intronic	NA
GBM_A_T1--5	chr13:20000072	G	NA	25	0	25	37.720	2.894	0	0	0	25	0	TPTE2	intronic	NA
GBM_A_T1--6	chr13:20000072	G	NA	41	0	41	37.439	4.439	0	0	0	38	0	TPTE2	intronic	NA
GBM_A_T1--7	chr13:20000072	G	T	40	0.050	38	36.158	3.621	2	37.000	0.000	38	2	TPTE2	intronic	NA
GBM_A_T1--8	chr13:20000072	G	NA	33	0	33	35.667	6.014	0	0	0	29	0	TPTE2	intronic	NA
GBM_A_T1--GL	chr13:20000072	G	NA	88	0	88	36.205	4.749	0	0	0	81	0	TPTE2	intronic	NA
GBM_A_T1--1	chr13:20000078	G	C	22	0.273	16	37.250	3.256	6	32.833	1.835	15	6	TPTE2	intronic	NA
GBM_A_T1--2	chr13:20000078	G	NA	11	0	11	36.909	4.158	0	0	0	10	0	TPTE2	intronic	NA
GBM_A_T1--3	chr13:20000078	G	NA	19	0	19	36.526	6.363	0	0	0	17	0	TPTE2	intronic	NA
GBM_A_T1--4	chr13:20000078	G	C	22	0.091	20	37.700	4.378	2	34.000	0.000	19	2	TPTE2	intronic	NA
GBM_A_T1--5	chr13:20000078	G	NA	21	0	21	37.476	3.371	0	0	0	21	0	TPTE2	intronic	NA
GBM_A_T1--6	chr13:20000078	G	NA	36	0	36	36.306	5.746	0	0	0	33	0	TPTE2	intronic	NA
GBM_A_T1--7	chr13:20000078	G	C	30	0.067	28	37.179	4.164	2	32.500	2.121	27	2	TPTE2	intronic	NA
GBM_A_T1--8	chr13:20000078	G	NA	26	0	26	36.846	4.007	0	0	0	25	0	TPTE2	intronic	NA
GBM_A_T1--GL	chr13:20000078	G	NA	78	0	78	36.423	3.926	0	0	0	73	0	TPTE2	intronic	NA
GBM_A_T1--1	chr13:20069332	C	NA	58	0	58	37.172	3.705	0	0	0	56	0	TPTE2	intronic	NA
GBM_A_T1--2	chr13:20069332	C	T	16	0.188	13	36.462	3.711	3	39.333	2.887	13	3	TPTE2	intronic	NA
GBM_A_T1--3	chr13:20069332	C	NA	45	0	45	37.644	3.581	0	0	0	44	0	TPTE2	intronic	NA
GBM_A_T1--4	chr13:20069332	C	NA	55	0	55	37.491	4.764	0	0	0	52	0	TPTE2	intronic	NA
GBM_A_T1--5	chr13:20069332	C	NA	18	0	18	36.667	4.159	0	0	0	17	0	TPTE2	intronic	NA
GBM_A_T1--6	chr13:20069332	C	NA	86	0	86	36.581	4.415	0	0	0	79	0	TPTE2	intronic	NA
GBM_A_T1--7	chr13:20069332	C	T	68	0.015	67	36.284	3.919	1	36.000	0.000	63	1	TPTE2	intronic	NA
GBM_A_T1--8	chr13:20069332	C	NA	68	0	68	36.132	4.652	0	0	0	66	0	TPTE2	intronic	NA
GBM_A_T1--GL	chr13:20069332	C	NA	108	0	108	36.204	5.578	0	0	0	101	0	TPTE2	intronic	NA
GBM_A_T1--1	chr13:20216373	C	NA	40	0	40	36.575	4.187	0	0	0	38	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr13:20216373	C	A	16	0.188	13	36.615	3.686	3	39.333	1.528	13	3	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr13:20216373	C	NA	35	0	35	38.200	2.599	0	0	0	35	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr13:20216373	C	NA	46	0	46	37.761	3.478	0	0	0	45	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr13:20216373	C	NA	31	0	31	37.774	2.986	0	0	0	31	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr13:20216373	C	NA	45	0	45	35.756	5.023	0	0	0	41	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr13:20216373	C	NA	37	0	37	35.000	6.267	0	0	0	31	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr13:20216373	C	NA	52	0	52	37.077	3.412	0	0	0	51	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr13:20216373	C	NA	45	0	45	34.911	8.482	0	0	0	41	0	MPHOSPH8	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr13:28681644	C	NA	18	0	18	34.611	8.111	0	0	0	15	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--2	chr13:28681644	C	NA	15	0	15	37.000	5.028	0	0	0	14	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--3	chr13:28681644	C	A	15	0.267	11	38.000	3.924	4	31.500	4.509	10	3	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--4	chr13:28681644	C	NA	11	0	11	37.000	3.194	0	0	0	11	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--5	chr13:28681644	C	NA	16	0	16	34.312	3.516	0	0	0	16	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--6	chr13:28681644	C	NA	20	0	20	35.400	6.969	0	0	0	19	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--7	chr13:28681644	C	NA	16	0	16	35.562	4.501	0	0	0	15	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--8	chr13:28681644	C	NA	11	0	11	35.273	3.744	0	0	0	11	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--GL	chr13:28681644	C	NA	33	0	33	35.545	5.466	0	0	0	29	0	FLT3(dist=6915),PAN3-AS1(dist=29336)	intergenic	NA
GBM_A_T1--1	chr1:34286189	A	C	33	0.424	19	36.579	6.987	14	38.214	5.177	18	13	CSMD2	intronic	NA
GBM_A_T1--2	chr1:34286189	A	C	18	0.611	7	39.000	2.646	11	39.455	2.115	7	11	CSMD2	intronic	NA
GBM_A_T1--3	chr1:34286189	A	C	33	0.242	25	37.480	3.698	8	38.375	2.669	23	8	CSMD2	intronic	NA
GBM_A_T1--4	chr1:34286189	A	C	36	0.417	21	36.524	4.343	15	39.133	2.588	20	15	CSMD2	intronic	NA
GBM_A_T1--5	chr1:34286189	A	C	26	0.500	13	37.000	4.103	13	39.538	1.506	12	13	CSMD2	intronic	NA
GBM_A_T1--6	chr1:34286189	A	NA	53	0	53	37.547	4.457	0	0	0	51	0	CSMD2	intronic	NA
GBM_A_T1--7	chr1:34286189	A	C	26	0.654	9	35.222	5.740	17	37.294	7.531	7	16	CSMD2	intronic	NA
GBM_A_T1--8	chr1:34286189	A	C	46	0.217	36	36.667	4.057	10	37.400	3.978	34	10	CSMD2	intronic	NA
GBM_A_T1--GL	chr1:34286189	A	NA	60	0	59	36.424	5.972	0	0	0	54	0	CSMD2	intronic	NA
GBM_A_T1--1	chr13:43538177	T	NA	48	0	48	38.854	2.989	0	0	0	48	0	EPSTI1	intronic	NA
GBM_A_T1--2	chr13:43538177	T	C	13	0.231	10	39.000	2.357	3	39.000	3.464	10	3	EPSTI1	intronic	NA
GBM_A_T1--3	chr13:43538177	T	NA	45	0	45	39.133	2.616	0	0	0	45	0	EPSTI1	intronic	NA
GBM_A_T1--4	chr13:43538177	T	NA	36	0	36	39.056	2.529	0	0	0	36	0	EPSTI1	intronic	NA
GBM_A_T1--5	chr13:43538177	T	NA	27	0	27	38.778	3.479	0	0	0	26	0	EPSTI1	intronic	NA
GBM_A_T1--6	chr13:43538177	T	NA	82	0	82	38.195	2.971	0	0	0	82	0	EPSTI1	intronic	NA
GBM_A_T1--7	chr13:43538177	T	NA	57	0	57	38.088	3.214	0	0	0	56	0	EPSTI1	intronic	NA
GBM_A_T1--8	chr13:43538177	T	NA	41	0	41	38.488	2.873	0	0	0	41	0	EPSTI1	intronic	NA
GBM_A_T1--GL	chr13:43538177	T	NA	56	0	56	37.464	5.031	0	0	0	54	0	EPSTI1	intronic	NA
GBM_A_T1--1	chr1:36766485	A	NA	20	0	20	38.700	2.494	0	0	0	20	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--2	chr1:36766485	A	G	11	0.273	8	37.750	4.301	3	37.667	3.055	7	3	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--3	chr1:36766485	A	NA	23	0	23	38.826	2.516	0	0	0	23	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--4	chr1:36766485	A	NA	23	0	23	37.783	3.437	0	0	0	23	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--5	chr1:36766485	A	NA	18	0	18	38.167	4.878	0	0	0	17	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--6	chr1:36766485	A	NA	36	0	36	36.250	4.177	0	0	0	33	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--7	chr1:36766485	A	NA	36	0	36	37.028	4.551	0	0	0	35	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--8	chr1:36766485	A	NA	32	0	32	36.750	4.250	0	0	0	29	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--GL	chr1:36766485	A	NA	72	0	72	36.903	4.630	0	0	0	69	0	THRAP3(NM_005119:exon10:c.2304-2A>G)	splicing	NA
GBM_A_T1--1	chr1:38048507	C	NA	34	0	34	37.412	3.201	0	0	0	33	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:38048507	C	NA	13	0	13	37.462	3.072	0	0	0	13	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:38048507	C	A	29	0.172	24	36.625	6.652	5	34.200	5.805	22	4	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:38048507	C	NA	48	0	48	37.354	3.271	0	0	0	47	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:38048507	C	NA	25	0	25	38.160	3.023	0	0	0	25	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:38048507	C	NA	43	0	43	37.209	3.461	0	0	0	42	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:38048507	C	NA	27	0	27	37.259	3.665	0	0	0	26	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:38048507	C	A	51	0.020	50	36.760	3.589	1	32.000	0.000	48	1	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:38048507	C	NA	54	0	54	36.074	4.770	0	0	0	48	0	GNL2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr13:95121032	A	NA	30	0	30	36.100	4.459	0	0	0	29	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr13:95121032	A	NA	14	0	14	38.143	2.507	0	0	0	14	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr13:95121032	A	NA	39	0	39	38.103	3.059	0	0	0	38	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr13:95121032	A	NA	38	0	38	37.342	3.078	0	0	0	38	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr13:95121032	A	NA	24	0	24	37.042	4.080	0	0	0	22	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr13:95121032	A	NA	45	0	45	34.711	7.210	0	0	0	39	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr13:95121032	A	G	41	0.390	25	36.160	3.793	16	37.000	3.615	23	15	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr13:95121032	A	NA	48	0	48	35.708	5.153	0	0	0	45	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr13:95121032	A	NA	98	0	98	36.296	3.602	0	0	0	94	0	DCT	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:40011410	G	NA	18	0	18	36.278	4.295	0	0	0	17	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--2	chr1:40011410	G	T	16	0.188	13	37.692	3.038	3	37.667	2.309	13	3	PPIEL	ncRNA_exonic	NA
GBM_A_T1--3	chr1:40011410	G	NA	31	0	31	38.161	2.410	0	0	0	31	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--4	chr1:40011410	G	NA	25	0	25	36.800	3.304	0	0	0	25	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--5	chr1:40011410	G	NA	16	0	16	37.000	2.966	0	0	0	16	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--6	chr1:40011410	G	NA	41	0	41	35.780	5.931	0	0	0	38	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--7	chr1:40011410	G	NA	25	0	25	36.200	3.937	0	0	0	24	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--8	chr1:40011410	G	NA	21	0	21	33.667	7.465	0	0	0	18	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--GL	chr1:40011410	G	NA	50	0	50	35.800	5.983	0	0	0	45	0	PPIEL	ncRNA_exonic	NA
GBM_A_T1--1	chr14:23354028	A	NA	21	0	21	36.190	2.960	0	0	0	20	0	REM2	exonic	synonymous_SNV
GBM_A_T1--2	chr14:23354028	A	NA	11	0	11	36.091	2.809	0	0	0	11	0	REM2	exonic	synonymous_SNV
GBM_A_T1--3	chr14:23354028	A	T	19	0.211	15	34.733	6.756	4	31.000	4.546	13	3	REM2	exonic	synonymous_SNV
GBM_A_T1--4	chr14:23354028	A	NA	19	0	19	36.421	3.580	0	0	0	19	0	REM2	exonic	synonymous_SNV
GBM_A_T1--5	chr14:23354028	A	NA	20	0	20	37.200	4.175	0	0	0	19	0	REM2	exonic	synonymous_SNV
GBM_A_T1--6	chr14:23354028	A	NA	34	0	34	34.265	5.561	0	0	0	31	0	REM2	exonic	synonymous_SNV
GBM_A_T1--7	chr14:23354028	A	NA	30	0	30	34.933	3.796	0	0	0	28	0	REM2	exonic	synonymous_SNV
GBM_A_T1--8	chr14:23354028	A	NA	31	0	31	34.290	6.362	0	0	0	28	0	REM2	exonic	synonymous_SNV
GBM_A_T1--GL	chr14:23354028	A	NA	58	0	58	34.466	4.366	0	0	0	50	0	REM2	exonic	synonymous_SNV
GBM_A_T1--1	chr1:43108252	A	NA	45	0	45	37.467	3.571	0	0	0	44	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:43108252	A	G	21	0.190	17	37.882	3.789	4	35.000	5.888	16	3	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:43108252	A	NA	38	0	38	36.974	4.722	0	0	0	37	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:43108252	A	NA	41	0	39	37.564	2.521	0	0	0	39	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:43108252	A	NA	26	0	26	36.923	3.298	0	0	0	25	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:43108252	A	NA	45	0	45	36.822	4.097	0	0	0	42	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:43108252	A	NA	29	0	29	37.241	3.192	0	0	0	29	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:43108252	A	NA	30	0	30	37.200	3.671	0	0	0	29	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:43108252	A	NA	47	0	47	36.979	4.537	0	0	0	46	0	CCDC30	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr1:46094065	A	NA	48	0	48	36.896	3.592	0	0	0	45	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr1:46094065	A	T	16	0.188	13	36.692	3.066	3	36.333	2.309	13	3	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr1:46094065	A	NA	48	0	48	36.938	4.995	0	0	0	45	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr1:46094065	A	NA	35	0	35	37.629	3.020	0	0	0	34	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr1:46094065	A	NA	39	0	39	36.256	3.683	0	0	0	37	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr1:46094065	A	NA	65	0	65	36.600	4.007	0	0	0	63	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr1:46094065	A	NA	64	0	64	35.266	5.028	0	0	0	57	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr1:46094065	A	NA	49	0	49	36.571	3.547	0	0	0	48	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr1:46094065	A	NA	103	0	103	35.825	4.251	0	0	0	97	0	GPBP1L1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr14:73721688	T	A	20	0.200	16	34.812	7.808	4	31.500	7.141	13	2	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr14:73721688	T	NA	17	0	17	36.765	3.251	0	0	0	17	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr14:73721688	T	NA	24	0	24	37.000	2.703	0	0	0	24	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr14:73721688	T	NA	37	0	37	35.459	3.716	0	0	0	33	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr14:73721688	T	NA	18	0	18	36.944	2.999	0	0	0	18	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr14:73721688	T	NA	29	0	29	33.862	6.413	0	0	0	23	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr14:73721688	T	NA	25	0	24	36.375	3.104	0	0	0	24	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr14:73721688	T	NA	30	0	30	33.667	5.827	0	0	0	25	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr14:73721688	T	NA	51	0	51	34.412	4.952	0	0	0	46	0	PAPLN	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr14:90204627	C	A	13	0.308	9	36.889	1.900	4	33.000	2.828	9	3	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--2	chr14:90204627	C	NA	13	0	13	36.385	2.022	0	0	0	13	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--3	chr14:90204627	C	NA	14	0	13	37.000	3.317	0	0	0	13	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--4	chr14:90204627	C	NA	20	0	20	37.250	2.573	0	0	0	20	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--5	chr14:90204627	C	NA	14	0	14	31.357	6.476	0	0	0	12	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--6	chr14:90204627	C	NA	17	0	17	34.765	4.944	0	0	0	14	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--7	chr14:90204627	C	NA	17	0	17	35.000	2.179	0	0	0	17	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--8	chr14:90204627	C	NA	15	0	15	34.600	3.397	0	0	0	14	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--GL	chr14:90204627	C	NA	41	0	41	34.756	3.833	0	0	0	37	0	FOXN3(dist=119133),EFCAB11(dist=56709)	intergenic	NA
GBM_A_T1--1	chr14:96781733	C	NA	43	0	43	37.302	3.181	0	0	0	42	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr14:96781733	C	A	16	0.188	13	33.462	10.651	3	39.000	1.000	11	3	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr14:96781733	C	NA	34	0	34	37.853	2.721	0	0	0	34	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr14:96781733	C	NA	57	0	57	37.895	3.086	0	0	0	56	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr14:96781733	C	NA	26	0	26	38.462	2.404	0	0	0	26	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr14:96781733	C	NA	54	0	54	36.000	4.670	0	0	0	52	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr14:96781733	C	NA	48	0	48	37.500	3.087	0	0	0	46	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr14:96781733	C	NA	73	0	73	36.740	4.028	0	0	0	70	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr14:96781733	C	NA	94	0	93	35.882	5.515	0	0	0	85	0	ATG2B	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr15:24922057	G	T	32	0.250	24	35.250	5.788	8	35.875	2.748	21	8	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr15:24922057	G	NA	16	0	16	30.375	8.936	0	0	0	12	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr15:24922057	G	NA	54	0	54	34.056	6.758	0	0	0	46	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr15:24922057	G	NA	35	0	35	34.914	4.293	0	0	0	33	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr15:24922057	G	NA	37	0	37	36.432	4.147	0	0	0	36	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr15:24922057	G	T	42	0.048	40	34.900	5.042	2	25.000	9.899	35	1	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr15:24922057	G	NA	33	0	33	34.121	4.794	0	0	0	30	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr15:24922057	G	T	51	0.078	47	34.106	5.530	4	35.250	3.948	41	4	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr15:24922057	G	NA	96	0	96	34.938	4.744	0	0	0	88	0	NPAP1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr15:25981326	C	A	48	0.021	47	35.979	4.214	1	35.000	0.000	43	1	ATP10A	intronic	NA
GBM_A_T1--2	chr15:25981326	C	A	21	0.190	17	37.059	3.750	4	37.500	3.000	16	4	ATP10A	intronic	NA
GBM_A_T1--3	chr15:25981326	C	NA	41	0	41	35.073	5.935	0	0	0	36	0	ATP10A	intronic	NA
GBM_A_T1--4	chr15:25981326	C	NA	47	0	47	36.702	3.776	0	0	0	43	0	ATP10A	intronic	NA
GBM_A_T1--5	chr15:25981326	C	NA	37	0	37	37.054	2.924	0	0	0	37	0	ATP10A	intronic	NA
GBM_A_T1--6	chr15:25981326	C	NA	78	0	77	34.623	4.654	0	0	0	70	0	ATP10A	intronic	NA
GBM_A_T1--7	chr15:25981326	C	NA	53	0	53	34.283	5.799	0	0	0	46	0	ATP10A	intronic	NA
GBM_A_T1--8	chr15:25981326	C	NA	77	0	77	34.468	5.345	0	0	0	69	0	ATP10A	intronic	NA
GBM_A_T1--GL	chr15:25981326	C	NA	89	0	89	35.809	3.018	0	0	0	88	0	ATP10A	intronic	NA
GBM_A_T1--1	chr15:48780508	A	NA	137	0	18	33.833	3.185	0	0	0	16	0	FBN1	intronic	NA
GBM_A_T1--2	chr15:48780508	A	NA	55	0	12	34.250	0.965	0	0	0	12	0	FBN1	intronic	NA
GBM_A_T1--3	chr15:48780508	A	NA	163	0	18	34.333	1.645	0	0	0	17	0	FBN1	intronic	NA
GBM_A_T1--4	chr15:48780508	A	NA	155	0	16	34.250	1.238	0	0	0	16	0	FBN1	intronic	NA
GBM_A_T1--5	chr15:48780508	A	NA	111	0	14	34.000	1.359	0	0	0	14	0	FBN1	intronic	NA
GBM_A_T1--6	chr15:48780508	A	T	179	0.050	27	32.778	5.395	9	33.111	1.616	25	9	FBN1	intronic	NA
GBM_A_T1--7	chr15:48780508	A	NA	180	0	18	34.389	0.979	0	0	0	18	0	FBN1	intronic	NA
GBM_A_T1--8	chr15:48780508	A	T	235	0.004	34	34.176	3.873	1	34.000	0.000	32	1	FBN1	intronic	NA
GBM_A_T1--GL	chr15:48780508	A	NA	312	0	41	34.073	2.138	0	0	0	41	0	FBN1	intronic	NA
GBM_A_T1--1	chr15:50528248	T	NA	39	0	39	38.897	3.110	0	0	0	38	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--2	chr15:50528248	T	C	17	0.176	14	38.071	2.303	3	39.000	3.464	14	3	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--3	chr15:50528248	T	NA	34	0	34	38.382	3.153	0	0	0	33	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--4	chr15:50528248	T	NA	43	0	43	38.372	3.360	0	0	0	42	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--5	chr15:50528248	T	NA	16	0	16	37.938	4.611	0	0	0	15	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--6	chr15:50528248	T	NA	53	0	53	37.962	4.062	0	0	0	51	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--7	chr15:50528248	T	C	47	0.021	46	36.261	4.973	1	35.000	0.000	42	1	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--8	chr15:50528248	T	NA	60	0	60	37.833	3.706	0	0	0	57	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--GL	chr15:50528248	T	NA	74	0	73	36.890	4.990	0	0	0	68	0	SLC27A2	exonic	synonymous_SNV
GBM_A_T1--1	chr15:59385536	C	T	38	0.211	29	38.586	5.448	8	35.000	2.619	27	8	RNF111	intronic	NA
GBM_A_T1--2	chr15:59385536	C	NA	20	0	18	38.056	5.493	0	0	0	17	0	RNF111	intronic	NA
GBM_A_T1--3	chr15:59385536	C	T	37	0.054	34	39.059	2.581	2	32.000	1.414	34	2	RNF111	intronic	NA
GBM_A_T1--4	chr15:59385536	C	NA	42	0	41	39.829	1.548	0	0	0	41	0	RNF111	intronic	NA
GBM_A_T1--5	chr15:59385536	C	T	27	0.037	26	39.692	1.738	1	31.000	0.000	26	1	RNF111	intronic	NA
GBM_A_T1--6	chr15:59385536	C	T	49	0.061	46	37.043	4.427	3	35.000	0.000	44	3	RNF111	intronic	NA
GBM_A_T1--7	chr15:59385536	C	T	38	0.105	34	38.471	3.287	4	31.250	7.500	32	3	RNF111	intronic	NA
GBM_A_T1--8	chr15:59385536	C	T	45	0.044	43	37.674	5.263	2	35.000	0.000	40	2	RNF111	intronic	NA
GBM_A_T1--GL	chr15:59385536	C	NA	56	0	56	37.625	5.751	0	0	0	51	0	RNF111	intronic	NA
GBM_A_T1--1	chr15:59385560	T	C	45	0.244	34	31.441	9.925	11	33.273	10.326	26	9	RNF111	intronic	NA
GBM_A_T1--2	chr15:59385560	T	C	23	0.261	17	32.176	8.840	6	25.667	12.193	13	3	RNF111	intronic	NA
GBM_A_T1--3	chr15:59385560	T	NA	45	0	41	34.024	6.211	0	0	0	36	0	RNF111	intronic	NA
GBM_A_T1--4	chr15:59385560	T	NA	56	0	52	33.212	6.855	0	0	0	45	0	RNF111	intronic	NA
GBM_A_T1--5	chr15:59385560	T	C	36	0.056	34	33.382	6.661	2	23.500	7.778	28	0	RNF111	intronic	NA
GBM_A_T1--6	chr15:59385560	T	NA	56	0	53	32.887	6.518	0	0	0	44	0	RNF111	intronic	NA
GBM_A_T1--7	chr15:59385560	T	NA	39	0	38	33.105	7.150	0	0	0	32	0	RNF111	intronic	NA
GBM_A_T1--8	chr15:59385560	T	NA	46	0	46	32.283	8.405	0	0	0	38	0	RNF111	intronic	NA
GBM_A_T1--GL	chr15:59385560	T	NA	59	0	56	32.357	9.008	0	0	0	48	0	RNF111	intronic	NA
GBM_A_T1--1	chr15:65243215	G	T	11	0.273	8	38.375	2.446	3	36.000	4.583	8	3	ANKDD1A	intronic	NA
GBM_A_T1--2	chr15:65243215	G	NA	10	0	10	36.600	2.503	0	0	0	10	0	ANKDD1A	intronic	NA
GBM_A_T1--3	chr15:65243215	G	NA	24	0	24	35.750	6.408	0	0	0	22	0	ANKDD1A	intronic	NA
GBM_A_T1--4	chr15:65243215	G	NA	19	0	19	37.211	2.840	0	0	0	19	0	ANKDD1A	intronic	NA
GBM_A_T1--5	chr15:65243215	G	NA	14	0	14	36.214	3.556	0	0	0	14	0	ANKDD1A	intronic	NA
GBM_A_T1--6	chr15:65243215	G	NA	24	0	24	36.417	3.966	0	0	0	23	0	ANKDD1A	intronic	NA
GBM_A_T1--7	chr15:65243215	G	NA	25	0	25	33.640	6.701	0	0	0	21	0	ANKDD1A	intronic	NA
GBM_A_T1--8	chr15:65243215	G	NA	33	0	33	35.970	3.015	0	0	0	32	0	ANKDD1A	intronic	NA
GBM_A_T1--GL	chr15:65243215	G	NA	49	0	49	33.980	5.786	0	0	0	42	0	ANKDD1A	intronic	NA
GBM_A_T1--1	chr15:75042470	C	NA	32	0	32	35.312	4.915	0	0	0	29	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr15:75042470	C	NA	29	0	29	37.586	4.162	0	0	0	28	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr15:75042470	C	A	38	0.132	33	35.121	6.421	5	36.200	3.564	30	5	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr15:75042470	C	NA	20	0	20	36.700	3.771	0	0	0	20	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr15:75042470	C	A	37	0.027	36	34.944	7.103	1	32.000	0.000	32	1	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr15:75042470	C	NA	31	0	31	37.032	3.478	0	0	0	30	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr15:75042470	C	NA	37	0	37	34.892	6.839	0	0	0	35	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr15:75042470	C	NA	26	0	26	33.038	8.450	0	0	0	20	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr15:75042470	C	NA	97	0	97	36.330	5.049	0	0	0	93	0	CYP1A2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr15:78200196	G	NA	19	0	19	36.158	3.321	0	0	0	18	0	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--2	chr15:78200196	G	A	17	0.235	13	33.692	8.390	4	35.500	1.291	12	4	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--3	chr15:78200196	G	A	32	0.031	31	34.387	3.403	1	31.000	0.000	29	1	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--4	chr15:78200196	G	A	19	0.053	18	35.556	2.975	1	35.000	0.000	16	1	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--5	chr15:78200196	G	NA	16	0	16	35.375	4.177	0	0	0	15	0	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--6	chr15:78200196	G	A	30	0.033	29	35.069	3.161	1	33.000	0.000	27	1	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--7	chr15:78200196	G	A	30	0.033	29	33.828	4.327	1	35.000	0.000	24	1	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--8	chr15:78200196	G	NA	34	0	34	34.765	3.210	0	0	0	31	0	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--GL	chr15:78200196	G	NA	47	0	47	33.660	5.239	0	0	0	40	0	RP11-307C19.3(dist=258615),LOC645752(dist=6363)	intergenic	NA
GBM_A_T1--1	chr15:91035947	A	NA	18	0	18	37.500	3.485	0	0	0	18	0	IQGAP1	intronic	NA
GBM_A_T1--2	chr15:91035947	A	NA	12	0	12	37.167	5.474	0	0	0	11	0	IQGAP1	intronic	NA
GBM_A_T1--3	chr15:91035947	A	NA	17	0	17	37.294	3.350	0	0	0	17	0	IQGAP1	intronic	NA
GBM_A_T1--4	chr15:91035947	A	C	11	0.273	8	39.250	1.982	3	34.667	0.577	8	3	IQGAP1	intronic	NA
GBM_A_T1--5	chr15:91035947	A	NA	11	0	11	37.727	3.849	0	0	0	11	0	IQGAP1	intronic	NA
GBM_A_T1--6	chr15:91035947	A	NA	29	0	29	35.586	5.124	0	0	0	25	0	IQGAP1	intronic	NA
GBM_A_T1--7	chr15:91035947	A	NA	17	0	17	37.941	3.112	0	0	0	16	0	IQGAP1	intronic	NA
GBM_A_T1--8	chr15:91035947	A	NA	28	0	28	36.929	2.956	0	0	0	28	0	IQGAP1	intronic	NA
GBM_A_T1--GL	chr15:91035947	A	NA	35	0	35	36.086	5.141	0	0	0	34	0	IQGAP1	intronic	NA
GBM_A_T1--1	chr15:91454715	C	NA	13	0	13	35.769	3.004	0	0	0	12	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr15:91454715	C	NA	10	0	10	37.700	3.057	0	0	0	10	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr15:91454715	C	NA	26	0	26	35.154	3.926	0	0	0	24	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr15:91454715	C	NA	14	0	14	34.571	4.926	0	0	0	13	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr15:91454715	C	NA	24	0	23	34.304	4.922	0	0	0	21	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr15:91454715	C	NA	24	0	24	34.708	5.196	0	0	0	21	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr15:91454715	C	A	19	0.211	15	36.800	3.968	4	33.500	1.732	14	4	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr15:91454715	C	NA	31	0	29	35.379	3.688	0	0	0	28	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr15:91454715	C	NA	69	0	69	34.899	6.035	0	0	0	62	0	MAN2A2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr16:15141836	C	NA	49	0	49	35.286	4.983	0	0	0	42	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--2	chr16:15141836	C	A	15	0.200	12	36.250	2.417	3	38.333	3.055	12	3	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--3	chr16:15141836	C	NA	42	0	42	36.786	3.220	0	0	0	42	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--4	chr16:15141836	C	NA	35	0	35	35.943	3.489	0	0	0	32	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--5	chr16:15141836	C	NA	41	0	40	34.275	5.340	0	0	0	37	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--6	chr16:15141836	C	NA	45	0	45	34.622	6.300	0	0	0	39	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--7	chr16:15141836	C	NA	54	0	54	34.019	5.513	0	0	0	47	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--8	chr16:15141836	C	NA	64	0	64	34.344	5.735	0	0	0	54	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--GL	chr16:15141836	C	NA	113	0	113	34.876	4.883	0	0	0	100	0	NTAN1,PDXDC1	intronic	NA
GBM_A_T1--1	chr16:20482983	C	NA	65	0	65	37.969	3.005	0	0	0	64	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr16:20482983	C	A	15	0.200	12	38.917	2.875	3	38.667	2.517	12	3	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr16:20482983	C	NA	44	0	44	37.636	5.426	0	0	0	42	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr16:20482983	C	NA	55	0	55	37.418	5.152	0	0	0	53	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr16:20482983	C	NA	37	0	37	36.811	3.992	0	0	0	36	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr16:20482983	C	NA	58	0	58	36.534	4.650	0	0	0	53	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr16:20482983	C	NA	45	0	45	36.533	5.093	0	0	0	42	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr16:20482983	C	NA	65	0	65	36.662	4.960	0	0	0	62	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr16:20482983	C	NA	61	0	61	36.672	5.198	0	0	0	59	0	ACSM2A	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr16:20561032	T	NA	35	0	35	31.514	5.153	0	0	0	26	0	ACSM2B	intronic	NA
GBM_A_T1--2	chr16:20561032	T	NA	20	0	20	31.100	7.745	0	0	0	16	0	ACSM2B	intronic	NA
GBM_A_T1--3	chr16:20561032	T	NA	45	0	43	30.372	6.708	0	0	0	30	0	ACSM2B	intronic	NA
GBM_A_T1--4	chr16:20561032	T	NA	46	0	46	29.522	8.521	0	0	0	30	0	ACSM2B	intronic	NA
GBM_A_T1--5	chr16:20561032	T	NA	26	0	25	28.160	8.552	0	0	0	13	0	ACSM2B	intronic	NA
GBM_A_T1--6	chr16:20561032	T	NA	41	0	40	30.000	6.555	0	0	0	27	0	ACSM2B	intronic	NA
GBM_A_T1--7	chr16:20561032	T	A	42	0.405	24	25.208	9.704	17	33.176	6.396	11	12	ACSM2B	intronic	NA
GBM_A_T1--8	chr16:20561032	T	A	44	0.045	41	27.000	7.493	2	21.000	19.799	20	1	ACSM2B	intronic	NA
GBM_A_T1--GL	chr16:20561032	T	NA	56	0	55	28.436	7.774	0	0	0	35	0	ACSM2B	intronic	NA
GBM_A_T1--1	chr16:31087887	G	NA	22	0	22	35.273	6.378	0	0	0	19	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr16:31087887	G	NA	12	0	12	35.833	3.881	0	0	0	12	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr16:31087887	G	NA	15	0	15	36.600	4.205	0	0	0	14	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr16:31087887	G	NA	12	0	12	37.167	4.387	0	0	0	11	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr16:31087887	G	NA	13	0	13	36.615	3.097	0	0	0	13	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr16:31087887	G	NA	14	0	14	33.000	8.611	0	0	0	12	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr16:31087887	G	A	14	0.214	11	35.000	6.496	3	34.333	6.028	10	2	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr16:31087887	G	NA	12	0	12	34.917	6.802	0	0	0	9	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr16:31087887	G	NA	45	0	45	36.156	3.717	0	0	0	42	0	ZNF646	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr16:33969283	G	C	15	0.133	13	39.462	1.898	2	36.500	4.950	13	2	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--2	chr16:33969283	G	C	12	0.250	9	39.667	1.732	3	36.667	5.859	9	3	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--3	chr16:33969283	G	C	21	0.143	18	39.056	2.711	3	39.333	0.577	18	3	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--4	chr16:33969283	G	NA	13	0	13	39.385	1.805	0	0	0	13	0	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--5	chr16:33969283	G	C	11	0.091	10	39.700	1.337	1	41.000	0.000	10	1	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--6	chr16:33969283	G	C	23	0.087	21	38.286	3.635	2	39.500	2.121	20	2	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--7	chr16:33969283	G	C	16	0.438	9	38.889	2.421	7	38.571	2.299	9	7	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--8	chr16:33969283	G	C	26	0.038	25	36.920	7.251	1	34.000	0.000	23	1	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--GL	chr16:33969283	G	NA	37	0	37	38.351	3.561	0	0	0	36	0	LINC00273(dist=6780),UBE2MP1(dist=434519)	intergenic	NA
GBM_A_T1--1	chr16:33983246	G	NA	18	0	18	38.944	2.461	0	0	0	18	0	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--2	chr16:33983246	G	A	20	0.200	16	40.062	1.436	4	36.250	5.737	16	3	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--3	chr16:33983246	G	NA	30	0	30	37.800	3.556	0	0	0	29	0	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--4	chr16:33983246	G	A	18	0.056	17	39.294	2.932	1	40.000	0.000	17	1	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--5	chr16:33983246	G	A	23	0.087	21	38.905	2.166	2	39.000	1.414	21	2	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--6	chr16:33983246	G	A	31	0.097	27	38.222	2.940	3	38.333	3.055	27	3	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--7	chr16:33983246	G	A	37	0.081	33	37.970	3.450	3	38.000	1.732	32	3	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--8	chr16:33983246	G	A	18	0.111	16	35.250	9.306	2	40.500	0.707	13	2	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--GL	chr16:33983246	G	NA	59	0	59	38.017	3.330	0	0	0	58	0	LINC00273(dist=20743),UBE2MP1(dist=420556)	intergenic	NA
GBM_A_T1--1	chr16:419061	C	A	13	0.231	10	36.100	7.505	3	38.000	3.000	8	3	MRPL28	intronic	NA
GBM_A_T1--2	chr16:419061	C	NA	10	0	10	33.900	2.470	0	0	0	9	0	MRPL28	intronic	NA
GBM_A_T1--3	chr16:419061	C	NA	18	0	18	36.278	4.968	0	0	0	17	0	MRPL28	intronic	NA
GBM_A_T1--4	chr16:419061	C	NA	14	0	14	34.214	6.253	0	0	0	11	0	MRPL28	intronic	NA
GBM_A_T1--5	chr16:419061	C	NA	16	0	16	37.500	4.000	0	0	0	15	0	MRPL28	intronic	NA
GBM_A_T1--6	chr16:419061	C	NA	16	0	16	37.375	3.462	0	0	0	16	0	MRPL28	intronic	NA
GBM_A_T1--7	chr16:419061	C	NA	14	0	14	36.857	4.818	0	0	0	13	0	MRPL28	intronic	NA
GBM_A_T1--8	chr16:419061	C	NA	23	0	23	37.087	6.954	0	0	0	22	0	MRPL28	intronic	NA
GBM_A_T1--GL	chr16:419061	C	NA	41	0	41	36.415	4.878	0	0	0	36	0	MRPL28	intronic	NA
GBM_A_T1--1	chr16:50326607	C	NA	26	0	26	36.846	3.947	0	0	0	25	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--2	chr16:50326607	C	NA	27	0	27	36.704	3.921	0	0	0	26	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--3	chr16:50326607	C	NA	32	0	32	35.844	2.864	0	0	0	32	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--4	chr16:50326607	C	NA	25	0	25	33.920	5.545	0	0	0	23	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--5	chr16:50326607	C	A	35	0.171	29	35.724	2.827	6	35.667	3.327	29	6	ADCY7	exonic	synonymous_SNV
GBM_A_T1--6	chr16:50326607	C	NA	47	0	47	33.553	5.145	0	0	0	40	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--7	chr16:50326607	C	NA	62	0	62	33.677	6.505	0	0	0	56	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--8	chr16:50326607	C	NA	48	0	48	35.125	3.272	0	0	0	46	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--GL	chr16:50326607	C	NA	64	0	64	34.609	4.230	0	0	0	58	0	ADCY7	exonic	synonymous_SNV
GBM_A_T1--1	chr16:57989163	G	A	46	0.283	33	35.939	3.526	13	36.846	2.794	31	13	CNGB1	UTR3	NA
GBM_A_T1--2	chr16:57989163	G	A	19	0.368	12	31.917	6.259	7	35.143	3.579	8	6	CNGB1	UTR3	NA
GBM_A_T1--3	chr16:57989163	G	A	40	0.425	23	33.739	7.641	17	36.588	2.526	20	17	CNGB1	UTR3	NA
GBM_A_T1--4	chr16:57989163	G	A	42	0.119	37	36.108	3.290	5	30.800	6.723	36	3	CNGB1	UTR3	NA
GBM_A_T1--5	chr16:57989163	G	A	15	0.200	12	35.917	2.109	3	38.333	2.309	12	3	CNGB1	UTR3	NA
GBM_A_T1--6	chr16:57989163	G	A	47	0.319	32	35.594	5.476	15	32.800	4.092	30	12	CNGB1	UTR3	NA
GBM_A_T1--7	chr16:57989163	G	A	88	0.534	40	35.900	4.893	47	33.213	7.163	38	41	CNGB1	UTR3	NA
GBM_A_T1--8	chr16:57989163	G	A	40	0.200	32	35.000	3.637	8	36.000	2.390	31	8	CNGB1	UTR3	NA
GBM_A_T1--GL	chr16:57989163	G	NA	81	0	81	34.383	6.053	0	0	0	69	0	CNGB1	UTR3	NA
GBM_A_T1--1	chr16:69352539	G	NA	41	0	41	35.610	5.890	0	0	0	39	0	VPS4A	intronic	NA
GBM_A_T1--2	chr16:69352539	G	A	24	0.375	15	37.333	3.063	9	35.889	3.621	15	9	VPS4A	intronic	NA
GBM_A_T1--3	chr16:69352539	G	NA	40	0	40	36.700	3.314	0	0	0	39	0	VPS4A	intronic	NA
GBM_A_T1--4	chr16:69352539	G	NA	37	0	37	36.730	2.969	0	0	0	37	0	VPS4A	intronic	NA
GBM_A_T1--5	chr16:69352539	G	NA	32	0	32	36.688	3.658	0	0	0	32	0	VPS4A	intronic	NA
GBM_A_T1--6	chr16:69352539	G	NA	55	0	55	36.109	4.370	0	0	0	52	0	VPS4A	intronic	NA
GBM_A_T1--7	chr16:69352539	G	NA	42	0	42	35.952	3.800	0	0	0	41	0	VPS4A	intronic	NA
GBM_A_T1--8	chr16:69352539	G	NA	41	0	41	35.756	3.967	0	0	0	39	0	VPS4A	intronic	NA
GBM_A_T1--GL	chr16:69352539	G	NA	76	0	76	34.487	5.168	0	0	0	67	0	VPS4A	intronic	NA
GBM_A_T1--1	chr1:6705199	A	NA	13	0	13	38.000	3.055	0	0	0	13	0	DNAJC11	intronic	NA
GBM_A_T1--2	chr1:6705199	A	NA	12	0	12	37.583	3.965	0	0	0	11	0	DNAJC11	intronic	NA
GBM_A_T1--3	chr1:6705199	A	NA	17	0	17	37.529	3.281	0	0	0	17	0	DNAJC11	intronic	NA
GBM_A_T1--4	chr1:6705199	A	NA	15	0	15	35.933	5.483	0	0	0	14	0	DNAJC11	intronic	NA
GBM_A_T1--5	chr1:6705199	A	NA	15	0	15	36.933	4.044	0	0	0	14	0	DNAJC11	intronic	NA
GBM_A_T1--6	chr1:6705199	A	NA	45	0	45	36.733	3.792	0	0	0	43	0	DNAJC11	intronic	NA
GBM_A_T1--7	chr1:6705199	A	G	14	0.214	11	37.364	3.880	3	37.667	4.163	10	3	DNAJC11	intronic	NA
GBM_A_T1--8	chr1:6705199	A	NA	21	0	21	34.762	6.441	0	0	0	17	0	DNAJC11	intronic	NA
GBM_A_T1--GL	chr1:6705199	A	NA	41	0	41	34.927	6.322	0	0	0	34	0	DNAJC11	intronic	NA
GBM_A_T1--1	chr16:815705	G	NA	36	0	36	35.306	4.547	0	0	0	32	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--2	chr16:815705	G	A	11	0.273	8	37.875	3.137	3	34.333	1.155	8	3	MSLN	exonic	synonymous_SNV
GBM_A_T1--3	chr16:815705	G	NA	30	0	30	35.133	5.812	0	0	0	27	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--4	chr16:815705	G	NA	37	0	37	35.865	2.188	0	0	0	37	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--5	chr16:815705	G	NA	27	0	27	36.296	3.440	0	0	0	26	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--6	chr16:815705	G	NA	54	0	54	35.833	3.745	0	0	0	51	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--7	chr16:815705	G	NA	27	0	26	34.962	3.256	0	0	0	25	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--8	chr16:815705	G	NA	34	0	34	35.235	3.465	0	0	0	32	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--GL	chr16:815705	G	NA	48	0	48	34.625	5.884	0	0	0	41	0	MSLN	exonic	synonymous_SNV
GBM_A_T1--1	chr16:84225295	C	NA	17	0	17	35.529	3.744	0	0	0	16	0	ADAD2	intronic	NA
GBM_A_T1--2	chr16:84225295	C	T	13	0.231	10	36.900	2.558	3	37.667	3.215	10	3	ADAD2	intronic	NA
GBM_A_T1--3	chr16:84225295	C	NA	24	0	24	34.583	7.372	0	0	0	21	0	ADAD2	intronic	NA
GBM_A_T1--4	chr16:84225295	C	NA	22	0	20	36.300	3.771	0	0	0	19	0	ADAD2	intronic	NA
GBM_A_T1--5	chr16:84225295	C	NA	19	0	19	34.211	5.073	0	0	0	16	0	ADAD2	intronic	NA
GBM_A_T1--6	chr16:84225295	C	NA	41	0	41	33.317	6.381	0	0	0	34	0	ADAD2	intronic	NA
GBM_A_T1--7	chr16:84225295	C	NA	38	0	38	33.605	7.016	0	0	0	29	0	ADAD2	intronic	NA
GBM_A_T1--8	chr16:84225295	C	NA	26	0	26	32.308	8.498	0	0	0	20	0	ADAD2	intronic	NA
GBM_A_T1--GL	chr16:84225295	C	NA	67	0	67	34.164	4.932	0	0	0	58	0	ADAD2	intronic	NA
GBM_A_T1--1	chr16:84227790	T	NA	79	0	79	36.456	3.562	0	0	0	73	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--2	chr16:84227790	T	C	28	0.143	24	36.458	3.078	4	36.750	2.363	23	4	ADAD2	exonic	synonymous_SNV
GBM_A_T1--3	chr16:84227790	T	NA	85	0	85	35.976	3.931	0	0	0	78	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--4	chr16:84227790	T	NA	77	0	77	34.922	5.448	0	0	0	71	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--5	chr16:84227790	T	NA	55	0	55	35.455	3.910	0	0	0	52	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--6	chr16:84227790	T	NA	94	0	93	34.054	5.698	0	0	0	78	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--7	chr16:84227790	T	NA	78	0	78	33.359	7.060	0	0	0	63	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--8	chr16:84227790	T	NA	83	0	83	35.687	3.474	0	0	0	77	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--GL	chr16:84227790	T	NA	156	0	156	35.269	3.873	0	0	0	145	0	ADAD2	exonic	synonymous_SNV
GBM_A_T1--1	chr16:89649757	A	T	11	0.273	8	37.875	2.475	3	36.000	1.732	8	3	CPNE7	intronic	NA
GBM_A_T1--2	chr16:89649757	A	NA	11	0	10	36.100	3.929	0	0	0	9	0	CPNE7	intronic	NA
GBM_A_T1--3	chr16:89649757	A	NA	20	0	20	36.650	3.558	0	0	0	20	0	CPNE7	intronic	NA
GBM_A_T1--4	chr16:89649757	A	NA	12	0	12	38.000	2.132	0	0	0	12	0	CPNE7	intronic	NA
GBM_A_T1--5	chr16:89649757	A	NA	12	0	11	34.091	8.502	0	0	0	10	0	CPNE7	intronic	NA
GBM_A_T1--6	chr16:89649757	A	NA	14	0	14	35.429	3.694	0	0	0	13	0	CPNE7	intronic	NA
GBM_A_T1--7	chr16:89649757	A	NA	24	0	24	35.208	6.833	0	0	0	22	0	CPNE7	intronic	NA
GBM_A_T1--8	chr16:89649757	A	NA	11	0	11	30.636	12.052	0	0	0	8	0	CPNE7	intronic	NA
GBM_A_T1--GL	chr16:89649757	A	NA	44	0	44	33.318	6.480	0	0	0	37	0	CPNE7	intronic	NA
GBM_A_T1--1	chr17:17719605	C	NA	14	0	14	36.143	3.759	0	0	0	13	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--2	chr17:17719605	C	A	14	0.214	11	35.545	2.339	3	37.667	3.055	11	3	SREBF1	exonic	synonymous_SNV
GBM_A_T1--3	chr17:17719605	C	NA	30	0	30	35.300	4.580	0	0	0	27	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--4	chr17:17719605	C	NA	18	0	18	35.889	3.756	0	0	0	16	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--5	chr17:17719605	C	NA	21	0	21	35.857	3.798	0	0	0	20	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--6	chr17:17719605	C	NA	28	0	28	33.036	7.234	0	0	0	24	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--7	chr17:17719605	C	NA	30	0	30	34.967	4.437	0	0	0	29	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--8	chr17:17719605	C	NA	23	0	23	34.174	5.491	0	0	0	21	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--GL	chr17:17719605	C	NA	48	0	48	34.042	4.842	0	0	0	41	0	SREBF1	exonic	synonymous_SNV
GBM_A_T1--1	chr17:25280082	A	T	17	0.059	16	36.250	3.130	1	34.000	0.000	15	1	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--2	chr17:25280082	A	NA	12	0	12	34.917	2.644	0	0	0	12	0	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--3	chr17:25280082	A	NA	14	0	13	31.154	10.090	0	0	0	9	0	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--4	chr17:25280082	A	NA	21	0	21	34.714	5.789	0	0	0	19	0	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--5	chr17:25280082	A	T	19	0.053	18	35.611	5.575	1	31.000	0.000	17	1	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--6	chr17:25280082	A	T	29	0.276	21	33.952	5.463	8	37.250	2.659	18	8	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--7	chr17:25280082	A	T	22	0.045	21	35.571	2.891	1	38.000	0.000	20	1	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--8	chr17:25280082	A	NA	14	0	14	35.357	4.500	0	0	0	12	0	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--GL	chr17:25280082	A	NA	45	0	45	33.356	5.343	0	0	0	39	0	NONE(dist=NONE),MIR4522(dist=340854)	intergenic	NA
GBM_A_T1--1	chr17:27045193	C	NA	52	0	52	35.269	4.298	0	0	0	50	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--2	chr17:27045193	C	NA	21	0	21	36.810	2.892	0	0	0	21	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--3	chr17:27045193	C	NA	42	0	42	34.786	2.992	0	0	0	41	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--4	chr17:27045193	C	NA	44	0	44	34.545	5.880	0	0	0	40	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--5	chr17:27045193	C	T	26	0.154	22	33.773	6.969	4	34.750	3.096	20	4	RAB34	exonic	stopgain_SNV
GBM_A_T1--6	chr17:27045193	C	NA	51	0	51	33.529	5.446	0	0	0	45	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--7	chr17:27045193	C	NA	40	0	40	34.650	4.418	0	0	0	38	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--8	chr17:27045193	C	NA	46	0	46	34.196	5.171	0	0	0	40	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--GL	chr17:27045193	C	NA	105	0	105	33.724	4.567	0	0	0	94	0	RAB34	exonic	stopgain_SNV
GBM_A_T1--1	chr17:29559088	C	T	111	0.252	83	38.108	3.028	28	33.929	1.923	82	28	NF1	intronic	NA
GBM_A_T1--2	chr17:29559088	C	T	53	0.377	33	38.879	2.724	20	33.700	1.750	33	20	NF1	intronic	NA
GBM_A_T1--3	chr17:29559088	C	T	92	0.130	80	38.075	3.727	12	31.250	8.422	77	11	NF1	intronic	NA
GBM_A_T1--4	chr17:29559088	C	T	79	0.013	78	38.000	3.092	1	33.000	0.000	77	1	NF1	intronic	NA
GBM_A_T1--5	chr17:29559088	C	NA	66	0	66	37.924	2.916	0	0	0	65	0	NF1	intronic	NA
GBM_A_T1--6	chr17:29559088	C	T	143	0.210	112	37.196	3.991	30	33.400	2.372	108	28	NF1	intronic	NA
GBM_A_T1--7	chr17:29559088	C	T	137	0.226	106	37.519	3.451	31	33.419	1.822	102	29	NF1	intronic	NA
GBM_A_T1--8	chr17:29559088	C	NA	114	0	114	37.140	3.856	0	0	0	112	0	NF1	intronic	NA
GBM_A_T1--GL	chr17:29559088	C	NA	146	0	109	36.716	4.775	0	0	0	104	0	NF1	intronic	NA
GBM_A_T1--1	chr17:31344724	C	NA	44	0	44	37.205	5.463	0	0	0	43	0	ASIC2	intronic	NA
GBM_A_T1--2	chr17:31344724	C	A	24	0.042	23	34.696	8.552	1	41.000	0.000	21	1	ASIC2	intronic	NA
GBM_A_T1--3	chr17:31344724	C	NA	28	0	28	35.500	6.280	0	0	0	25	0	ASIC2	intronic	NA
GBM_A_T1--4	chr17:31344724	C	NA	38	0	38	37.605	2.776	0	0	0	38	0	ASIC2	intronic	NA
GBM_A_T1--5	chr17:31344724	C	A	22	0.182	18	37.667	2.567	4	38.500	3.000	18	4	ASIC2	intronic	NA
GBM_A_T1--6	chr17:31344724	C	NA	51	0	51	34.824	6.866	0	0	0	44	0	ASIC2	intronic	NA
GBM_A_T1--7	chr17:31344724	C	NA	50	0	50	35.840	5.084	0	0	0	47	0	ASIC2	intronic	NA
GBM_A_T1--8	chr17:31344724	C	NA	54	0	54	35.889	5.980	0	0	0	49	0	ASIC2	intronic	NA
GBM_A_T1--GL	chr17:31344724	C	NA	60	0	59	35.712	5.766	0	0	0	52	0	ASIC2	intronic	NA
GBM_A_T1--1	chr17:36493043	T	C	29	0.034	28	37.357	2.984	1	35.000	0.000	28	1	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:36493043	T	NA	15	0	15	36.267	2.915	0	0	0	15	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:36493043	T	NA	50	0	50	37.500	3.151	0	0	0	48	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:36493043	T	C	40	0.025	39	36.000	5.104	1	35.000	0.000	36	1	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:36493043	T	NA	39	0	39	36.487	5.581	0	0	0	38	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:36493043	T	C	20	0.200	16	35.375	5.084	4	33.000	6.928	14	3	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:36493043	T	NA	47	0	47	35.468	4.634	0	0	0	43	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:36493043	T	NA	42	0	42	35.810	3.078	0	0	0	40	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:36493043	T	NA	84	0	84	36.214	3.844	0	0	0	78	0	GPR179	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:37819168	C	NA	14	0	14	35.071	2.999	0	0	0	14	0	STARD3	UTR3	NA
GBM_A_T1--2	chr17:37819168	C	A	10	0.300	7	34.857	1.215	3	32.667	1.528	7	3	STARD3	UTR3	NA
GBM_A_T1--3	chr17:37819168	C	NA	11	0	11	33.182	9.315	0	0	0	9	0	STARD3	UTR3	NA
GBM_A_T1--4	chr17:37819168	C	NA	19	0	19	36.105	4.471	0	0	0	18	0	STARD3	UTR3	NA
GBM_A_T1--5	chr17:37819168	C	NA	11	0	11	36.000	3.256	0	0	0	10	0	STARD3	UTR3	NA
GBM_A_T1--6	chr17:37819168	C	NA	15	0	15	32.867	7.230	0	0	0	11	0	STARD3	UTR3	NA
GBM_A_T1--7	chr17:37819168	C	NA	11	0	11	32.273	8.510	0	0	0	8	0	STARD3	UTR3	NA
GBM_A_T1--8	chr17:37819168	C	NA	17	0	17	33.941	2.277	0	0	0	17	0	STARD3	UTR3	NA
GBM_A_T1--GL	chr17:37819168	C	NA	38	0	38	34.079	5.440	0	0	0	33	0	STARD3	UTR3	NA
GBM_A_T1--1	chr17:38447885	A	NA	114	0	114	36.842	5.302	0	0	0	108	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:38447885	A	NA	50	0	50	37.700	2.985	0	0	0	49	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:38447885	A	NA	108	0	108	36.426	5.290	0	0	0	100	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:38447885	A	NA	127	0	127	37.102	4.452	0	0	0	122	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:38447885	A	NA	96	0	96	36.615	4.337	0	0	0	89	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:38447885	A	NA	156	0	155	35.084	4.844	0	0	0	137	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:38447885	A	G	167	0.347	109	35.202	5.402	58	37.259	4.944	98	55	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:38447885	A	NA	149	0	149	35.443	5.926	0	0	0	134	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:38447885	A	NA	255	0	255	35.737	5.336	0	0	0	233	0	CDC6	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:39535853	C	A	16	0.250	12	37.167	2.588	4	35.750	2.872	12	4	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:39535853	C	NA	11	0	11	37.182	4.600	0	0	0	10	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:39535853	C	NA	21	0	21	36.238	4.426	0	0	0	20	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:39535853	C	NA	15	0	15	37.133	3.137	0	0	0	15	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:39535853	C	NA	21	0	21	34.619	5.670	0	0	0	16	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:39535853	C	A	33	0.061	31	34.806	5.624	2	34.500	0.707	28	2	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:39535853	C	NA	17	0	17	34.588	5.075	0	0	0	13	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:39535853	C	NA	20	0	20	35.300	7.146	0	0	0	17	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:39535853	C	NA	38	0	38	35.368	5.664	0	0	0	33	0	KRT34	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:40321680	C	A	20	0.200	16	36.688	3.049	4	33.500	1.000	16	4	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:40321680	C	NA	16	0	16	36.000	3.327	0	0	0	16	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:40321680	C	NA	26	0	26	34.962	2.735	0	0	0	25	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:40321680	C	NA	25	0	25	34.520	3.676	0	0	0	24	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:40321680	C	NA	14	0	14	35.214	3.534	0	0	0	13	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:40321680	C	NA	37	0	37	35.162	4.810	0	0	0	34	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:40321680	C	NA	23	0	23	33.217	5.657	0	0	0	21	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:40321680	C	NA	31	0	31	35.742	4.090	0	0	0	30	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:40321680	C	NA	86	0	86	34.837	3.710	0	0	0	83	0	KCNH4	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:40715206	G	NA	34	0	34	35.647	4.715	0	0	0	31	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:40715206	G	A	12	0.250	9	35.444	3.539	3	37.000	3.464	9	3	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:40715206	G	NA	25	0	25	34.520	4.529	0	0	0	23	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:40715206	G	NA	28	0	28	35.643	3.380	0	0	0	27	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:40715206	G	NA	29	0	29	34.379	3.858	0	0	0	28	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:40715206	G	NA	25	0	25	34.440	6.279	0	0	0	24	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:40715206	G	NA	21	0	21	35.095	4.036	0	0	0	20	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:40715206	G	NA	24	0	24	34.208	4.054	0	0	0	21	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:40715206	G	NA	70	0	70	35.386	3.708	0	0	0	66	0	COASY	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:42457158	G	NA	13	0	13	36.538	8.323	0	0	0	12	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--2	chr17:42457158	G	NA	13	0	13	37.846	1.519	0	0	0	13	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--3	chr17:42457158	G	NA	35	0	34	36.500	4.329	0	0	0	33	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--4	chr17:42457158	G	A	15	0.200	12	36.417	3.630	3	38.000	2.646	12	3	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--5	chr17:42457158	G	NA	27	0	27	35.556	3.672	0	0	0	26	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--6	chr17:42457158	G	NA	18	0	18	37.500	3.714	0	0	0	17	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--7	chr17:42457158	G	NA	27	0	27	35.704	3.911	0	0	0	26	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--8	chr17:42457158	G	NA	25	0	25	36.520	3.029	0	0	0	24	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--GL	chr17:42457158	G	NA	68	0	68	35.485	4.958	0	0	0	62	0	ITGA2B	exonic	synonymous_SNV
GBM_A_T1--1	chr17:47044638	C	NA	20	0	20	37.750	2.845	0	0	0	20	0	GIP	intronic	NA
GBM_A_T1--2	chr17:47044638	C	A	13	0.308	9	40.111	1.453	4	35.500	6.191	9	3	GIP	intronic	NA
GBM_A_T1--3	chr17:47044638	C	NA	37	0	37	37.135	4.590	0	0	0	35	0	GIP	intronic	NA
GBM_A_T1--4	chr17:47044638	C	NA	28	0	28	36.321	5.729	0	0	0	26	0	GIP	intronic	NA
GBM_A_T1--5	chr17:47044638	C	NA	23	0	23	35.652	5.765	0	0	0	21	0	GIP	intronic	NA
GBM_A_T1--6	chr17:47044638	C	NA	31	0	31	36.935	4.343	0	0	0	30	0	GIP	intronic	NA
GBM_A_T1--7	chr17:47044638	C	NA	26	0	26	37.615	2.801	0	0	0	26	0	GIP	intronic	NA
GBM_A_T1--8	chr17:47044638	C	NA	42	0	42	36.048	4.078	0	0	0	39	0	GIP	intronic	NA
GBM_A_T1--GL	chr17:47044638	C	NA	68	0	68	35.294	5.537	0	0	0	61	0	GIP	intronic	NA
GBM_A_T1--1	chr17:47075148	C	A	20	0.050	19	35.737	2.130	1	35.000	0.000	19	1	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:47075148	C	A	11	0.273	8	39.375	2.722	3	35.333	9.815	8	2	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:47075148	C	NA	26	0	26	34.808	4.445	0	0	0	24	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:47075148	C	NA	22	0	22	35.455	4.543	0	0	0	21	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:47075148	C	NA	18	0	18	35.944	3.811	0	0	0	17	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:47075148	C	A	29	0.034	28	34.893	4.237	1	33.000	0.000	25	1	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:47075148	C	NA	25	0	25	32.480	6.131	0	0	0	20	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:47075148	C	NA	28	0	28	33.000	6.716	0	0	0	24	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:47075148	C	NA	45	0	45	34.444	4.789	0	0	0	40	0	IGF2BP1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:53638560	C	NA	31	0	31	36.484	4.366	0	0	0	29	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--2	chr17:53638560	C	A	16	0.250	12	32.833	9.907	4	30.000	9.055	9	2	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--3	chr17:53638560	C	A	44	0.023	43	35.837	3.860	1	35.000	0.000	41	1	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--4	chr17:53638560	C	NA	52	0	52	37.058	3.250	0	0	0	52	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--5	chr17:53638560	C	NA	22	0	22	36.455	2.824	0	0	0	22	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--6	chr17:53638560	C	NA	58	0	58	34.966	5.746	0	0	0	52	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--7	chr17:53638560	C	NA	64	0	64	35.391	4.793	0	0	0	60	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--8	chr17:53638560	C	NA	69	0	69	35.609	5.336	0	0	0	62	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--GL	chr17:53638560	C	NA	81	0	81	35.284	4.678	0	0	0	71	0	MMD(dist=139219),TMEM100(dist=158428)	intergenic	NA
GBM_A_T1--1	chr17:61628184	G	NA	26	0	26	34.615	4.428	0	0	0	23	0	DCAF7	intronic	NA
GBM_A_T1--2	chr17:61628184	G	T	10	0.300	7	37.000	5.164	3	36.000	4.583	6	3	DCAF7	intronic	NA
GBM_A_T1--3	chr17:61628184	G	NA	14	0	13	33.000	2.915	0	0	0	11	0	DCAF7	intronic	NA
GBM_A_T1--4	chr17:61628184	G	NA	39	0	39	35.590	3.697	0	0	0	37	0	DCAF7	intronic	NA
GBM_A_T1--5	chr17:61628184	G	NA	21	0	21	35.524	5.400	0	0	0	20	0	DCAF7	intronic	NA
GBM_A_T1--6	chr17:61628184	G	NA	30	0	30	32.967	6.688	0	0	0	24	0	DCAF7	intronic	NA
GBM_A_T1--7	chr17:61628184	G	NA	34	0	34	33.088	6.132	0	0	0	29	0	DCAF7	intronic	NA
GBM_A_T1--8	chr17:61628184	G	NA	21	0	21	35.143	2.308	0	0	0	21	0	DCAF7	intronic	NA
GBM_A_T1--GL	chr17:61628184	G	NA	37	0	37	33.676	4.522	0	0	0	32	0	DCAF7	intronic	NA
GBM_A_T1--1	chr17:61899375	T	C	14	0.214	11	33.636	6.392	3	35.000	5.292	9	3	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr17:61899375	T	NA	11	0	11	35.455	6.440	0	0	0	10	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr17:61899375	T	NA	20	0	20	37.100	3.024	0	0	0	20	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr17:61899375	T	NA	22	0	22	36.500	2.502	0	0	0	22	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr17:61899375	T	NA	27	0	27	36.519	3.955	0	0	0	25	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr17:61899375	T	NA	18	0	18	36.333	4.256	0	0	0	17	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr17:61899375	T	NA	37	0	37	35.973	5.776	0	0	0	35	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr17:61899375	T	NA	45	0	45	35.733	5.805	0	0	0	42	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr17:61899375	T	NA	67	0	67	36.015	5.612	0	0	0	61	0	FTSJ3	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr17:62008768	C	NA	54	0	54	36.407	4.474	0	0	0	51	0	CD79B	intronic	NA
GBM_A_T1--2	chr17:62008768	C	NA	15	0	15	37.267	3.011	0	0	0	15	0	CD79B	intronic	NA
GBM_A_T1--3	chr17:62008768	C	NA	49	0	49	35.327	4.806	0	0	0	43	0	CD79B	intronic	NA
GBM_A_T1--4	chr17:62008768	C	T	53	0.057	50	35.980	4.461	3	35.667	3.055	47	3	CD79B	intronic	NA
GBM_A_T1--5	chr17:62008768	C	NA	40	0	40	36.325	3.540	0	0	0	38	0	CD79B	intronic	NA
GBM_A_T1--6	chr17:62008768	C	NA	58	0	58	34.414	6.235	0	0	0	48	0	CD79B	intronic	NA
GBM_A_T1--7	chr17:62008768	C	T	49	0.388	30	34.867	5.698	19	33.842	8.030	26	17	CD79B	intronic	NA
GBM_A_T1--8	chr17:62008768	C	T	46	0.022	43	35.442	4.925	1	34.000	0.000	41	1	CD79B	intronic	NA
GBM_A_T1--GL	chr17:62008768	C	NA	108	0	108	33.917	6.609	0	0	0	91	0	CD79B	intronic	NA
GBM_A_T1--1	chr17:75398221	C	NA	48	0	48	36.021	5.217	0	0	0	43	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--2	chr17:75398221	C	A	26	0.154	22	35.000	7.185	4	37.000	2.828	20	4	SEPT9	exonic	synonymous_SNV
GBM_A_T1--3	chr17:75398221	C	NA	59	0	59	36.492	5.325	0	0	0	53	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--4	chr17:75398221	C	NA	62	0	62	36.113	6.114	0	0	0	55	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--5	chr17:75398221	C	NA	36	0	36	37.167	2.646	0	0	0	36	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--6	chr17:75398221	C	NA	64	0	64	34.922	6.134	0	0	0	55	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--7	chr17:75398221	C	NA	53	0	53	34.623	7.262	0	0	0	45	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--8	chr17:75398221	C	NA	53	0	52	34.462	6.363	0	0	0	44	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--GL	chr17:75398221	C	NA	100	0	100	34.270	7.444	0	0	0	80	0	SEPT9	exonic	synonymous_SNV
GBM_A_T1--1	chr17:76160791	C	NA	25	0	25	35.640	3.134	0	0	0	24	0	C17orf99	intronic	NA
GBM_A_T1--2	chr17:76160791	C	NA	28	0	28	36.964	2.531	0	0	0	28	0	C17orf99	intronic	NA
GBM_A_T1--3	chr17:76160791	C	NA	22	0	22	36.864	2.817	0	0	0	22	0	C17orf99	intronic	NA
GBM_A_T1--4	chr17:76160791	C	A	17	0.176	14	36.357	3.543	3	37.667	3.215	13	3	C17orf99	intronic	NA
GBM_A_T1--5	chr17:76160791	C	NA	23	0	23	36.565	2.936	0	0	0	23	0	C17orf99	intronic	NA
GBM_A_T1--6	chr17:76160791	C	NA	20	0	20	35.800	2.949	0	0	0	20	0	C17orf99	intronic	NA
GBM_A_T1--7	chr17:76160791	C	NA	26	0	26	33.923	7.879	0	0	0	21	0	C17orf99	intronic	NA
GBM_A_T1--8	chr17:76160791	C	NA	20	0	20	37.050	3.284	0	0	0	19	0	C17orf99	intronic	NA
GBM_A_T1--GL	chr17:76160791	C	NA	60	0	60	35.667	5.061	0	0	0	56	0	C17orf99	intronic	NA
GBM_A_T1--1	chr17:78081529	G	A	28	0.107	24	34.083	4.272	3	35.667	2.887	21	3	GAA	intronic	NA
GBM_A_T1--2	chr17:78081529	G	A	13	0.077	12	36.750	2.527	1	34.000	0.000	12	1	GAA	intronic	NA
GBM_A_T1--3	chr17:78081529	G	NA	39	0	39	34.359	5.132	0	0	0	34	0	GAA	intronic	NA
GBM_A_T1--4	chr17:78081529	G	A	28	0.179	23	34.957	2.099	5	34.600	0.548	23	5	GAA	intronic	NA
GBM_A_T1--5	chr17:78081529	G	NA	27	0	27	35.630	3.318	0	0	0	26	0	GAA	intronic	NA
GBM_A_T1--6	chr17:78081529	G	NA	18	0	18	32.500	6.483	0	0	0	15	0	GAA	intronic	NA
GBM_A_T1--7	chr17:78081529	G	NA	26	0	26	33.731	4.055	0	0	0	23	0	GAA	intronic	NA
GBM_A_T1--8	chr17:78081529	G	NA	26	0	26	33.962	6.315	0	0	0	22	0	GAA	intronic	NA
GBM_A_T1--GL	chr17:78081529	G	NA	47	0	47	33.936	4.798	0	0	0	38	0	GAA	intronic	NA
GBM_A_T1--1	chr17:7948546	T	C	32	0.031	31	37.516	3.010	1	35.000	0.000	31	1	ALOX15B	intronic	NA
GBM_A_T1--2	chr17:7948546	T	C	12	0.083	11	36.727	3.580	1	37.000	0.000	10	1	ALOX15B	intronic	NA
GBM_A_T1--3	chr17:7948546	T	NA	21	0	21	37.143	4.453	0	0	0	20	0	ALOX15B	intronic	NA
GBM_A_T1--4	chr17:7948546	T	NA	42	0	42	36.810	3.351	0	0	0	40	0	ALOX15B	intronic	NA
GBM_A_T1--5	chr17:7948546	T	NA	30	0	30	36.233	2.622	0	0	0	30	0	ALOX15B	intronic	NA
GBM_A_T1--6	chr17:7948546	T	C	40	0.250	30	36.067	5.433	10	36.700	4.270	27	9	ALOX15B	intronic	NA
GBM_A_T1--7	chr17:7948546	T	NA	30	0	30	36.700	5.200	0	0	0	26	0	ALOX15B	intronic	NA
GBM_A_T1--8	chr17:7948546	T	NA	32	0	32	34.688	6.703	0	0	0	28	0	ALOX15B	intronic	NA
GBM_A_T1--GL	chr17:7948546	T	NA	73	0	73	35.493	5.838	0	0	0	69	0	ALOX15B	intronic	NA
GBM_A_T1--1	chr17:80021374	G	NA	40	0	40	37.675	3.626	0	0	0	38	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--2	chr17:80021374	G	A	11	0.273	8	37.000	3.295	3	38.667	3.215	8	3	DUS1L	exonic	stopgain_SNV
GBM_A_T1--3	chr17:80021374	G	NA	35	0	35	37.343	5.363	0	0	0	34	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--4	chr17:80021374	G	NA	40	0	40	38.200	2.919	0	0	0	39	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--5	chr17:80021374	G	NA	25	0	25	36.960	4.486	0	0	0	24	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--6	chr17:80021374	G	NA	51	0	51	36.255	4.698	0	0	0	46	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--7	chr17:80021374	G	NA	41	0	41	37.073	3.165	0	0	0	41	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--8	chr17:80021374	G	A	44	0.023	43	34.558	7.304	1	38.000	0.000	37	1	DUS1L	exonic	stopgain_SNV
GBM_A_T1--GL	chr17:80021374	G	NA	58	0	58	36.155	3.964	0	0	0	55	0	DUS1L	exonic	stopgain_SNV
GBM_A_T1--1	chr18:29487470	T	C	57	0.263	42	37.976	5.317	15	38.733	3.615	41	14	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr18:29487470	T	C	17	0.294	12	39.333	1.969	5	40.800	0.447	12	5	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr18:29487470	T	C	27	0.037	26	39.346	2.449	1	41.000	0.000	26	1	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr18:29487470	T	C	30	0.200	24	38.625	2.667	6	37.167	2.229	24	6	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr18:29487470	T	C	28	0.214	22	37.273	3.930	6	37.167	3.545	21	6	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr18:29487470	T	C	63	0.286	45	37.867	4.985	18	37.667	3.498	42	18	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr18:29487470	T	C	54	0.463	29	37.828	3.197	25	38.080	2.707	29	25	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr18:29487470	T	C	48	0.292	34	35.735	7.029	14	37.357	2.735	30	14	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr18:29487470	T	NA	76	0	76	37.697	4.010	0	0	0	73	0	TRAPPC8	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr18:52895329	A	NA	32	0	32	37.281	3.175	0	0	0	32	0	TCF4	intronic	NA
GBM_A_T1--2	chr18:52895329	A	NA	15	0	15	38.667	2.769	0	0	0	15	0	TCF4	intronic	NA
GBM_A_T1--3	chr18:52895329	A	NA	29	0	29	36.655	3.528	0	0	0	28	0	TCF4	intronic	NA
GBM_A_T1--4	chr18:52895329	A	NA	21	0	21	38.000	3.347	0	0	0	21	0	TCF4	intronic	NA
GBM_A_T1--5	chr18:52895329	A	NA	18	0	18	37.222	4.008	0	0	0	17	0	TCF4	intronic	NA
GBM_A_T1--6	chr18:52895329	A	NA	36	0	35	36.686	3.692	0	0	0	33	0	TCF4	intronic	NA
GBM_A_T1--7	chr18:52895329	A	T	33	0.394	20	35.900	5.821	13	39.000	2.550	17	13	TCF4	intronic	NA
GBM_A_T1--8	chr18:52895329	A	NA	44	0	44	35.886	4.731	0	0	0	43	0	TCF4	intronic	NA
GBM_A_T1--GL	chr18:52895329	A	NA	42	0	42	36.262	3.124	0	0	0	41	0	TCF4	intronic	NA
GBM_A_T1--1	chr18:55335785	T	NA	30	0	30	36.933	6.324	0	0	0	28	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--2	chr18:55335785	T	NA	17	0	17	38.353	2.936	0	0	0	17	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--3	chr18:55335785	T	A	34	0.412	20	38.300	3.526	14	34.571	0.852	19	14	RP11-35G9.3	UTR3	NA
GBM_A_T1--4	chr18:55335785	T	NA	29	0	29	37.586	4.484	0	0	0	26	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--5	chr18:55335785	T	NA	27	0	27	38.000	3.731	0	0	0	25	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--6	chr18:55335785	T	NA	43	0	43	36.256	5.538	0	0	0	39	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--7	chr18:55335785	T	NA	29	0	29	36.414	4.264	0	0	0	26	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--8	chr18:55335785	T	A	34	0.029	33	36.364	5.448	1	33.000	0.000	31	1	RP11-35G9.3	UTR3	NA
GBM_A_T1--GL	chr18:55335785	T	NA	41	0	41	35.585	7.120	0	0	0	34	0	RP11-35G9.3	UTR3	NA
GBM_A_T1--1	chr18:61468216	C	NA	55	0	55	38.127	2.932	0	0	0	55	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--2	chr18:61468216	C	NA	25	0	25	38.880	2.789	0	0	0	25	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--3	chr18:61468216	C	NA	51	0	51	37.431	3.678	0	0	0	49	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--4	chr18:61468216	C	T	64	0.016	63	37.190	4.417	1	35.000	0.000	61	1	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--5	chr18:61468216	C	NA	38	0	38	36.816	3.384	0	0	0	36	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--6	chr18:61468216	C	NA	68	0	68	36.250	5.038	0	0	0	63	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--7	chr18:61468216	C	T	48	0.167	40	36.400	6.003	8	32.250	9.925	37	7	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--8	chr18:61468216	C	NA	67	0	67	35.388	6.298	0	0	0	58	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--GL	chr18:61468216	C	NA	74	0	72	35.486	5.386	0	0	0	65	0	SERPINB7	exonic	synonymous_SNV
GBM_A_T1--1	chr1:87369094	C	A	57	0.018	56	36.429	3.870	1	39.000	0.000	53	1	SEP15	exonic	unknown
GBM_A_T1--2	chr1:87369094	C	A	30	0.133	26	37.308	4.164	4	40.000	2.000	24	4	SEP15	exonic	unknown
GBM_A_T1--3	chr1:87369094	C	A	47	0.021	45	36.978	3.454	1	41.000	0.000	43	1	SEP15	exonic	unknown
GBM_A_T1--4	chr1:87369094	C	NA	42	0	42	35.643	3.420	0	0	0	42	0	SEP15	exonic	unknown
GBM_A_T1--5	chr1:87369094	C	NA	35	0	35	36.943	3.903	0	0	0	33	0	SEP15	exonic	unknown
GBM_A_T1--6	chr1:87369094	C	A	61	0.016	59	35.153	5.819	1	37.000	0.000	56	1	SEP15	exonic	unknown
GBM_A_T1--7	chr1:87369094	C	NA	61	0	60	36.667	3.084	0	0	0	59	0	SEP15	exonic	unknown
GBM_A_T1--8	chr1:87369094	C	NA	54	0	54	35.796	3.672	0	0	0	53	0	SEP15	exonic	unknown
GBM_A_T1--GL	chr1:87369094	C	NA	81	0	80	35.487	4.386	0	0	0	72	0	SEP15	exonic	unknown
GBM_A_T1--1	chr18:8786117	C	A	67	0.015	66	31.545	9.125	1	35.000	0.000	55	1	SOGA2	intronic	NA
GBM_A_T1--2	chr18:8786117	C	NA	25	0	25	34.320	5.162	0	0	0	22	0	SOGA2	intronic	NA
GBM_A_T1--3	chr18:8786117	C	NA	55	0	55	31.873	8.849	0	0	0	47	0	SOGA2	intronic	NA
GBM_A_T1--4	chr18:8786117	C	NA	56	0	55	32.091	8.646	0	0	0	45	0	SOGA2	intronic	NA
GBM_A_T1--5	chr18:8786117	C	NA	42	0	42	32.476	6.094	0	0	0	36	0	SOGA2	intronic	NA
GBM_A_T1--6	chr18:8786117	C	NA	68	0	68	33.103	5.806	0	0	0	61	0	SOGA2	intronic	NA
GBM_A_T1--7	chr18:8786117	C	A	58	0.207	46	29.913	10.432	12	30.167	6.952	34	7	SOGA2	intronic	NA
GBM_A_T1--8	chr18:8786117	C	NA	77	0	77	33.286	6.485	0	0	0	68	0	SOGA2	intronic	NA
GBM_A_T1--GL	chr18:8786117	C	NA	134	0	134	31.843	8.246	0	0	0	108	0	SOGA2	intronic	NA
GBM_A_T1--1	chr19:10091864	C	NA	29	0	29	37.103	3.509	0	0	0	29	0	COL5A3	intronic	NA
GBM_A_T1--2	chr19:10091864	C	NA	13	0	13	35.846	2.734	0	0	0	13	0	COL5A3	intronic	NA
GBM_A_T1--3	chr19:10091864	C	NA	24	0	24	36.250	2.723	0	0	0	24	0	COL5A3	intronic	NA
GBM_A_T1--4	chr19:10091864	C	NA	25	0	25	36.000	2.972	0	0	0	25	0	COL5A3	intronic	NA
GBM_A_T1--5	chr19:10091864	C	A	25	0.160	21	35.048	4.376	4	35.750	0.957	20	4	COL5A3	intronic	NA
GBM_A_T1--6	chr19:10091864	C	NA	40	0	40	35.925	3.598	0	0	0	38	0	COL5A3	intronic	NA
GBM_A_T1--7	chr19:10091864	C	NA	39	0	39	36.231	4.976	0	0	0	37	0	COL5A3	intronic	NA
GBM_A_T1--8	chr19:10091864	C	NA	32	0	32	34.031	7.503	0	0	0	28	0	COL5A3	intronic	NA
GBM_A_T1--GL	chr19:10091864	C	NA	65	0	65	35.062	4.405	0	0	0	59	0	COL5A3	intronic	NA
GBM_A_T1--1	chr19:13346417	C	NA	27	0	27	36.444	3.490	0	0	0	27	0	CACNA1A	intronic	NA
GBM_A_T1--2	chr19:13346417	C	A	12	0.250	9	36.333	6.671	3	38.000	3.000	8	3	CACNA1A	intronic	NA
GBM_A_T1--3	chr19:13346417	C	NA	28	0	28	37.036	4.663	0	0	0	27	0	CACNA1A	intronic	NA
GBM_A_T1--4	chr19:13346417	C	NA	14	0	14	38.000	3.088	0	0	0	14	0	CACNA1A	intronic	NA
GBM_A_T1--5	chr19:13346417	C	NA	18	0	18	34.611	7.942	0	0	0	16	0	CACNA1A	intronic	NA
GBM_A_T1--6	chr19:13346417	C	NA	31	0	31	36.484	3.614	0	0	0	29	0	CACNA1A	intronic	NA
GBM_A_T1--7	chr19:13346417	C	NA	32	0	32	35.688	6.493	0	0	0	28	0	CACNA1A	intronic	NA
GBM_A_T1--8	chr19:13346417	C	NA	23	0	23	35.174	4.075	0	0	0	21	0	CACNA1A	intronic	NA
GBM_A_T1--GL	chr19:13346417	C	NA	70	0	70	36.200	3.378	0	0	0	69	0	CACNA1A	intronic	NA
GBM_A_T1--1	chr19:14827814	C	NA	20	0	20	35.050	7.045	0	0	0	19	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:14827814	C	NA	16	0	16	36.688	2.726	0	0	0	16	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:14827814	C	NA	28	0	28	37.250	2.562	0	0	0	28	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:14827814	C	A	13	0.231	10	38.500	2.506	3	36.667	2.887	10	3	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:14827814	C	NA	18	0	18	36.389	6.409	0	0	0	17	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:14827814	C	NA	35	0	35	35.657	4.130	0	0	0	34	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:14827814	C	NA	33	0	33	36.333	4.143	0	0	0	32	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:14827814	C	NA	31	0	31	36.129	2.473	0	0	0	31	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:14827814	C	NA	59	0	59	35.559	5.472	0	0	0	56	0	ZNF333	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:16620419	G	NA	21	0	21	36.619	4.318	0	0	0	20	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:16620419	G	NA	12	0	12	36.250	4.181	0	0	0	12	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:16620419	G	NA	32	0	32	36.625	4.910	0	0	0	30	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:16620419	G	NA	20	0	20	34.250	5.830	0	0	0	17	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:16620419	G	NA	18	0	18	36.444	3.294	0	0	0	18	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:16620419	G	A	20	0.200	16	36.875	2.941	4	37.250	2.872	16	4	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:16620419	G	NA	19	0	19	36.684	4.230	0	0	0	17	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:16620419	G	NA	36	0	36	34.861	4.788	0	0	0	33	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:16620419	G	NA	94	0	94	35.660	4.347	0	0	0	89	0	C19orf44	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:22497191	T	A	21	0.095	19	37.737	2.922	2	35.500	0.707	19	2	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:22497191	T	NA	21	0	12	37.750	3.223	0	0	0	12	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:22497191	T	NA	20	0	16	37.812	2.373	0	0	0	16	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:22497191	T	A	25	0.240	19	38.421	2.610	6	34.500	2.811	19	5	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:22497191	T	NA	30	0	24	37.750	2.878	0	0	0	24	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:22497191	T	A	45	0.178	37	37.568	3.460	8	36.000	2.204	36	8	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:22497191	T	NA	39	0	24	37.875	2.437	0	0	0	24	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:22497191	T	NA	57	0	42	35.476	6.985	0	0	0	39	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:22497191	T	NA	99	0	61	36.393	5.336	0	0	0	54	0	ZNF729	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:2991932	T	NA	49	0	49	36.592	2.922	0	0	0	49	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:2991932	T	C	12	0.333	8	37.500	2.673	4	37.000	2.828	8	4	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:2991932	T	NA	28	0	28	36.964	3.646	0	0	0	26	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:2991932	T	NA	43	0	43	36.581	4.165	0	0	0	40	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:2991932	T	NA	33	0	33	36.636	2.748	0	0	0	32	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:2991932	T	NA	43	0	43	35.372	3.792	0	0	0	38	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:2991932	T	NA	36	0	36	34.806	3.438	0	0	0	33	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:2991932	T	NA	47	0	47	36.489	3.223	0	0	0	46	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:2991932	T	NA	105	0	105	34.914	5.945	0	0	0	98	0	TLE6	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:34080613	G	NA	16	0	16	38.312	3.005	0	0	0	16	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--2	chr19:34080613	G	NA	10	0	10	36.300	5.012	0	0	0	9	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--3	chr19:34080613	G	NA	22	0	22	35.955	3.885	0	0	0	20	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--4	chr19:34080613	G	T	18	0.167	15	37.733	2.712	3	38.000	3.606	15	3	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--5	chr19:34080613	G	NA	22	0	22	38.727	2.529	0	0	0	22	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--6	chr19:34080613	G	NA	25	0	25	38.320	4.298	0	0	0	24	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--7	chr19:34080613	G	NA	27	0	27	36.333	4.297	0	0	0	26	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--8	chr19:34080613	G	NA	30	0	30	37.833	3.086	0	0	0	30	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--GL	chr19:34080613	G	NA	42	0	41	37.585	3.930	0	0	0	39	0	PEPD(dist=67814),CHST8(dist=32248)	intergenic	NA
GBM_A_T1--1	chr19:36002393	C	NA	72	0	72	35.458	5.672	0	0	0	67	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:36002393	C	T	17	0.235	13	36.000	3.082	4	36.000	3.742	13	4	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:36002393	C	NA	55	0	55	36.527	4.574	0	0	0	52	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:36002393	C	NA	42	0	42	34.929	4.228	0	0	0	39	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:36002393	C	NA	47	0	47	34.255	6.418	0	0	0	39	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:36002393	C	NA	64	0	64	34.797	5.708	0	0	0	56	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:36002393	C	NA	51	0	51	33.843	6.224	0	0	0	45	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:36002393	C	NA	59	0	59	33.407	5.216	0	0	0	49	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:36002393	C	NA	107	0	107	33.766	6.077	0	0	0	87	0	DMKN	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:37006067	T	C	19	0.211	15	40.067	1.438	4	39.500	1.915	15	4	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:37006067	T	C	11	0.273	8	39.000	2.563	3	39.000	2.000	8	3	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:37006067	T	C	21	0.143	18	39.833	1.505	3	38.000	4.359	18	3	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:37006067	T	C	17	0.294	12	40.333	1.231	5	38.800	1.095	12	5	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:37006067	T	C	24	0.208	19	36.263	6.531	5	37.600	3.975	17	5	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:37006067	T	C	32	0.062	30	38.367	3.700	2	36.500	0.707	29	2	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:37006067	T	C	34	0.412	20	37.900	4.712	14	36.714	4.999	19	13	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:37006067	T	C	37	0.189	30	37.133	6.967	7	37.857	3.388	28	7	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:37006067	T	NA	86	0	86	37.872	4.333	0	0	0	82	0	ZNF260	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:41633940	C	NA	17	0	17	33.412	2.938	0	0	0	14	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:41633940	C	A	16	0.188	13	33.692	2.213	3	36.667	3.786	13	3	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:41633940	C	NA	23	0	23	35.652	3.311	0	0	0	23	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:41633940	C	NA	16	0	16	34.688	4.127	0	0	0	14	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:41633940	C	NA	19	0	19	34.842	2.834	0	0	0	19	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:41633940	C	NA	24	0	24	33.042	5.238	0	0	0	21	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:41633940	C	NA	26	0	26	33.038	4.404	0	0	0	22	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:41633940	C	NA	24	0	24	32.500	4.139	0	0	0	20	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:41633940	C	NA	51	0	51	33.392	5.223	0	0	0	44	0	CYP2F1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:42313967	C	NA	25	0	25	35.560	3.441	0	0	0	24	0	CEACAM3	intronic	NA
GBM_A_T1--2	chr19:42313967	C	A	17	0.176	14	35.714	3.407	3	37.333	2.887	13	3	CEACAM3	intronic	NA
GBM_A_T1--3	chr19:42313967	C	NA	25	0	25	36.920	3.174	0	0	0	25	0	CEACAM3	intronic	NA
GBM_A_T1--4	chr19:42313967	C	NA	24	0	24	36.750	2.923	0	0	0	24	0	CEACAM3	intronic	NA
GBM_A_T1--5	chr19:42313967	C	NA	16	0	16	34.625	4.544	0	0	0	15	0	CEACAM3	intronic	NA
GBM_A_T1--6	chr19:42313967	C	NA	38	0	38	34.421	6.550	0	0	0	35	0	CEACAM3	intronic	NA
GBM_A_T1--7	chr19:42313967	C	NA	21	0	21	35.000	4.062	0	0	0	18	0	CEACAM3	intronic	NA
GBM_A_T1--8	chr19:42313967	C	NA	31	0	31	34.613	3.180	0	0	0	30	0	CEACAM3	intronic	NA
GBM_A_T1--GL	chr19:42313967	C	NA	35	0	34	34.647	4.067	0	0	0	32	0	CEACAM3	intronic	NA
GBM_A_T1--1	chr19:44051027	G	NA	10	0	10	39.000	2.211	0	0	0	10	0	XRCC1	intronic	NA
GBM_A_T1--2	chr19:44051027	G	NA	10	0	10	36.100	7.965	0	0	0	9	0	XRCC1	intronic	NA
GBM_A_T1--3	chr19:44051027	G	NA	16	0	16	36.688	5.986	0	0	0	13	0	XRCC1	intronic	NA
GBM_A_T1--4	chr19:44051027	G	NA	15	0	15	36.600	3.334	0	0	0	15	0	XRCC1	intronic	NA
GBM_A_T1--5	chr19:44051027	G	A	10	0.300	7	33.571	12.843	3	35.667	4.509	6	3	XRCC1	intronic	NA
GBM_A_T1--6	chr19:44051027	G	NA	20	0	20	35.300	5.079	0	0	0	19	0	XRCC1	intronic	NA
GBM_A_T1--7	chr19:44051027	G	NA	19	0	19	35.474	5.295	0	0	0	16	0	XRCC1	intronic	NA
GBM_A_T1--8	chr19:44051027	G	NA	11	0	11	33.909	6.220	0	0	0	8	0	XRCC1	intronic	NA
GBM_A_T1--GL	chr19:44051027	G	NA	43	0	42	34.905	5.673	0	0	0	35	0	XRCC1	intronic	NA
GBM_A_T1--1	chr19:46280783	C	A	26	0.154	22	35.864	2.550	4	36.500	1.915	22	4	DMPK	exonic	synonymous_SNV
GBM_A_T1--2	chr19:46280783	C	A	22	0.045	21	31.762	8.342	1	41.000	0.000	18	1	DMPK	exonic	synonymous_SNV
GBM_A_T1--3	chr19:46280783	C	NA	25	0	25	34.360	4.271	0	0	0	23	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--4	chr19:46280783	C	NA	32	0	31	34.387	5.903	0	0	0	30	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--5	chr19:46280783	C	NA	18	0	18	34.833	3.634	0	0	0	17	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--6	chr19:46280783	C	NA	25	0	25	33.680	4.151	0	0	0	23	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--7	chr19:46280783	C	NA	24	0	24	33.250	6.145	0	0	0	19	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--8	chr19:46280783	C	NA	27	0	27	34.630	3.443	0	0	0	26	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--GL	chr19:46280783	C	NA	67	0	67	34.687	5.208	0	0	0	64	0	DMPK	exonic	synonymous_SNV
GBM_A_T1--1	chr19:49949859	C	NA	33	0	33	35.909	6.710	0	0	0	29	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--2	chr19:49949859	C	NA	13	0	13	36.231	3.833	0	0	0	12	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--3	chr19:49949859	C	NA	14	0	14	36.357	4.217	0	0	0	13	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--4	chr19:49949859	C	NA	33	0	33	37.333	4.036	0	0	0	32	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--5	chr19:49949859	C	NA	24	0	24	35.750	3.529	0	0	0	24	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--6	chr19:49949859	C	A	15	0.200	12	36.333	4.053	3	35.000	0.000	12	3	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--7	chr19:49949859	C	NA	25	0	25	34.560	6.449	0	0	0	21	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--8	chr19:49949859	C	NA	18	0	18	34.611	6.070	0	0	0	16	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--GL	chr19:49949859	C	NA	57	0	55	34.727	6.211	0	0	0	49	0	PIH1D1	exonic	synonymous_SNV
GBM_A_T1--1	chr19:50384709	C	NA	12	0	12	36.250	3.911	0	0	0	12	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--2	chr19:50384709	C	NA	14	0	14	37.429	3.345	0	0	0	14	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--3	chr19:50384709	C	NA	22	0	21	37.714	3.019	0	0	0	21	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--4	chr19:50384709	C	A	17	0.059	16	37.250	2.978	1	41.000	0.000	16	1	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--5	chr19:50384709	C	NA	21	0	21	37.000	2.608	0	0	0	21	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--6	chr19:50384709	C	A	16	0.188	13	36.923	2.362	3	37.667	3.055	13	3	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--7	chr19:50384709	C	NA	23	0	23	34.348	6.880	0	0	0	20	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--8	chr19:50384709	C	NA	20	0	20	36.850	3.617	0	0	0	19	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--GL	chr19:50384709	C	NA	64	0	64	36.297	3.971	0	0	0	61	0	TBC1D17	exonic	synonymous_SNV
GBM_A_T1--1	chr19:55652176	A	C	37	0.027	36	38.194	2.595	1	41.000	0.000	36	1	TNNT1	intronic	NA
GBM_A_T1--2	chr19:55652176	A	NA	18	0	18	38.500	2.662	0	0	0	18	0	TNNT1	intronic	NA
GBM_A_T1--3	chr19:55652176	A	NA	41	0	41	38.122	2.272	0	0	0	41	0	TNNT1	intronic	NA
GBM_A_T1--4	chr19:55652176	A	NA	30	0	30	36.567	3.213	0	0	0	29	0	TNNT1	intronic	NA
GBM_A_T1--5	chr19:55652176	A	NA	36	0	36	37.250	2.862	0	0	0	36	0	TNNT1	intronic	NA
GBM_A_T1--6	chr19:55652176	A	NA	59	0	59	37.085	4.082	0	0	0	57	0	TNNT1	intronic	NA
GBM_A_T1--7	chr19:55652176	A	C	105	0.181	86	38.105	3.018	19	35.895	6.781	85	18	TNNT1	intronic	NA
GBM_A_T1--8	chr19:55652176	A	C	57	0.088	52	37.115	4.250	5	33.800	3.633	49	5	TNNT1	intronic	NA
GBM_A_T1--GL	chr19:55652176	A	NA	112	0	112	37.741	2.955	0	0	0	111	0	TNNT1	intronic	NA
GBM_A_T1--1	chr19:56423925	G	A	54	0.204	43	36.744	5.657	11	37.000	2.933	41	11	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:56423925	G	A	15	0.400	9	36.778	2.108	6	36.167	5.193	9	5	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:56423925	G	A	50	0.020	49	38.388	3.174	1	37.000	0.000	48	1	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:56423925	G	A	33	0.121	29	37.345	3.967	4	39.500	1.915	28	4	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:56423925	G	A	41	0.122	36	37.000	3.906	5	36.800	3.033	35	5	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:56423925	G	A	56	0.321	38	35.974	7.535	18	37.444	4.273	33	17	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:56423925	G	A	54	0.500	27	37.407	3.866	27	37.333	3.648	27	25	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:56423925	G	A	62	0.290	44	38.045	2.812	18	37.833	2.728	44	18	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:56423925	G	NA	120	0	120	36.700	4.488	0	0	0	111	0	NLRP13	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:5766182	C	NA	21	0	21	36.095	2.862	0	0	0	21	0	CATSPERD	intronic	NA
GBM_A_T1--2	chr19:5766182	C	NA	15	0	15	37.400	3.942	0	0	0	15	0	CATSPERD	intronic	NA
GBM_A_T1--3	chr19:5766182	C	NA	18	0	18	38.222	3.098	0	0	0	18	0	CATSPERD	intronic	NA
GBM_A_T1--4	chr19:5766182	C	NA	26	0	26	36.423	3.478	0	0	0	26	0	CATSPERD	intronic	NA
GBM_A_T1--5	chr19:5766182	C	A	16	0.188	13	37.462	3.230	3	38.667	3.215	13	3	CATSPERD	intronic	NA
GBM_A_T1--6	chr19:5766182	C	NA	26	0	26	36.500	3.467	0	0	0	25	0	CATSPERD	intronic	NA
GBM_A_T1--7	chr19:5766182	C	NA	32	0	32	36.125	6.068	0	0	0	31	0	CATSPERD	intronic	NA
GBM_A_T1--8	chr19:5766182	C	NA	21	0	21	34.238	7.993	0	0	0	18	0	CATSPERD	intronic	NA
GBM_A_T1--GL	chr19:5766182	C	NA	45	0	45	35.289	5.505	0	0	0	40	0	CATSPERD	intronic	NA
GBM_A_T1--1	chr19:58352133	C	G	27	0.037	26	37.615	2.858	1	36.000	0.000	26	1	ZNF587B	intronic	NA
GBM_A_T1--2	chr19:58352133	C	NA	12	0	12	39.000	2.256	0	0	0	12	0	ZNF587B	intronic	NA
GBM_A_T1--3	chr19:58352133	C	G	25	0.160	21	37.857	4.053	4	37.500	1.732	20	4	ZNF587B	intronic	NA
GBM_A_T1--4	chr19:58352133	C	NA	32	0	32	38.062	2.711	0	0	0	32	0	ZNF587B	intronic	NA
GBM_A_T1--5	chr19:58352133	C	G	16	0.062	15	37.267	2.815	1	37.000	0.000	15	1	ZNF587B	intronic	NA
GBM_A_T1--6	chr19:58352133	C	NA	24	0	24	36.042	3.381	0	0	0	22	0	ZNF587B	intronic	NA
GBM_A_T1--7	chr19:58352133	C	NA	37	0	37	37.081	2.919	0	0	0	37	0	ZNF587B	intronic	NA
GBM_A_T1--8	chr19:58352133	C	G	25	0.040	24	37.792	2.843	1	37.000	0.000	23	1	ZNF587B	intronic	NA
GBM_A_T1--GL	chr19:58352133	C	NA	45	0	45	37.044	3.344	0	0	0	44	0	ZNF587B	intronic	NA
GBM_A_T1--1	chr19:726134	G	NA	19	0	19	36.263	3.724	0	0	0	18	0	PALM	intronic	NA
GBM_A_T1--2	chr19:726134	G	NA	11	0	11	35.364	3.325	0	0	0	11	0	PALM	intronic	NA
GBM_A_T1--3	chr19:726134	G	NA	30	0	30	36.433	3.945	0	0	0	29	0	PALM	intronic	NA
GBM_A_T1--4	chr19:726134	G	A	22	0.182	18	35.111	4.013	4	36.000	4.163	16	4	PALM	intronic	NA
GBM_A_T1--5	chr19:726134	G	NA	23	0	23	35.957	3.282	0	0	0	22	0	PALM	intronic	NA
GBM_A_T1--6	chr19:726134	G	NA	28	0	28	34.607	2.793	0	0	0	27	0	PALM	intronic	NA
GBM_A_T1--7	chr19:726134	G	NA	25	0	25	33.720	7.003	0	0	0	22	0	PALM	intronic	NA
GBM_A_T1--8	chr19:726134	G	NA	19	0	19	37.000	3.742	0	0	0	19	0	PALM	intronic	NA
GBM_A_T1--GL	chr19:726134	G	NA	55	0	55	33.473	7.031	0	0	0	49	0	PALM	intronic	NA
GBM_A_T1--1	chr19:8555470	G	NA	20	0	20	35.400	2.798	0	0	0	20	0	PRAM1	intronic	NA
GBM_A_T1--2	chr19:8555470	G	NA	16	0	16	36.000	5.254	0	0	0	14	0	PRAM1	intronic	NA
GBM_A_T1--3	chr19:8555470	G	NA	19	0	19	36.474	3.062	0	0	0	18	0	PRAM1	intronic	NA
GBM_A_T1--4	chr19:8555470	G	NA	25	0	25	35.000	5.649	0	0	0	24	0	PRAM1	intronic	NA
GBM_A_T1--5	chr19:8555470	G	NA	20	0	20	34.500	3.663	0	0	0	18	0	PRAM1	intronic	NA
GBM_A_T1--6	chr19:8555470	G	NA	27	0	26	35.615	3.556	0	0	0	24	0	PRAM1	intronic	NA
GBM_A_T1--7	chr19:8555470	G	A	23	0.304	15	33.733	6.881	7	30.286	10.356	12	4	PRAM1	intronic	NA
GBM_A_T1--8	chr19:8555470	G	NA	25	0	25	34.960	3.857	0	0	0	23	0	PRAM1	intronic	NA
GBM_A_T1--GL	chr19:8555470	G	NA	81	0	81	32.877	6.882	0	0	0	68	0	PRAM1	intronic	NA
GBM_A_T1--1	chr19:9049312	T	G	47	0.043	45	36.333	3.896	2	36.000	1.414	42	2	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr19:9049312	T	NA	35	0	35	36.457	3.584	0	0	0	33	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr19:9049312	T	NA	45	0	45	35.556	6.771	0	0	0	40	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr19:9049312	T	NA	40	0	40	36.625	3.712	0	0	0	39	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr19:9049312	T	NA	38	0	38	36.868	2.772	0	0	0	38	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr19:9049312	T	G	54	0.130	46	36.413	3.850	7	35.429	4.117	44	7	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr19:9049312	T	NA	61	0	61	36.279	3.602	0	0	0	58	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr19:9049312	T	NA	63	0	63	34.492	6.395	0	0	0	56	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr19:9049312	T	NA	137	0	137	35.876	4.305	0	0	0	126	0	MUC16	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr19:9076256	A	G	25	0.360	16	38.250	4.139	9	37.778	3.701	15	9	MUC16	exonic	synonymous_SNV
GBM_A_T1--2	chr19:9076256	A	G	23	0.391	14	37.071	4.763	9	33.556	9.926	13	7	MUC16	exonic	synonymous_SNV
GBM_A_T1--3	chr19:9076256	A	G	38	0.053	35	37.686	2.643	2	38.000	1.414	35	2	MUC16	exonic	synonymous_SNV
GBM_A_T1--4	chr19:9076256	A	G	23	0.261	17	38.706	2.756	6	37.667	3.670	17	6	MUC16	exonic	synonymous_SNV
GBM_A_T1--5	chr19:9076256	A	G	25	0.200	20	37.350	3.183	5	38.400	2.408	20	5	MUC16	exonic	synonymous_SNV
GBM_A_T1--6	chr19:9076256	A	G	35	0.400	21	36.381	4.177	14	36.071	3.931	19	14	MUC16	exonic	synonymous_SNV
GBM_A_T1--7	chr19:9076256	A	G	37	0.243	28	37.321	3.601	9	35.778	2.906	27	9	MUC16	exonic	synonymous_SNV
GBM_A_T1--8	chr19:9076256	A	G	34	0.265	25	35.280	7.966	9	34.556	5.102	22	8	MUC16	exonic	synonymous_SNV
GBM_A_T1--GL	chr19:9076256	A	NA	80	0	80	36.712	4.848	0	0	0	72	0	MUC16	exonic	synonymous_SNV
GBM_A_T1--1	chr20:18535620	T	NA	20	0	13	38.538	2.817	0	0	0	13	0	SEC23B	intronic	NA
GBM_A_T1--2	chr20:18535620	T	A	13	0.462	7	38.429	4.158	6	34.500	1.225	7	6	SEC23B	intronic	NA
GBM_A_T1--3	chr20:18535620	T	NA	18	0	12	36.333	8.948	0	0	0	11	0	SEC23B	intronic	NA
GBM_A_T1--4	chr20:18535620	T	NA	34	0	26	37.962	3.328	0	0	0	26	0	SEC23B	intronic	NA
GBM_A_T1--5	chr20:18535620	T	A	15	0.467	8	38.625	2.504	7	33.429	1.134	8	7	SEC23B	intronic	NA
GBM_A_T1--6	chr20:18535620	T	NA	31	0	25	39.120	2.698	0	0	0	25	0	SEC23B	intronic	NA
GBM_A_T1--7	chr20:18535620	T	NA	43	0	27	38.889	2.778	0	0	0	27	0	SEC23B	intronic	NA
GBM_A_T1--8	chr20:18535620	T	NA	40	0	28	37.964	4.880	0	0	0	27	0	SEC23B	intronic	NA
GBM_A_T1--GL	chr20:18535620	T	NA	61	0	42	36.405	5.835	0	0	0	39	0	SEC23B	intronic	NA
GBM_A_T1--1	chr20:2616590	G	A	117	0.342	77	37.026	3.479	40	36.575	4.355	76	38	TMC2	exonic	synonymous_SNV
GBM_A_T1--2	chr20:2616590	G	A	53	0.321	36	37.694	2.703	17	37.059	4.293	36	15	TMC2	exonic	synonymous_SNV
GBM_A_T1--3	chr20:2616590	G	A	104	0.087	94	37.734	3.480	9	36.333	6.021	92	8	TMC2	exonic	synonymous_SNV
GBM_A_T1--4	chr20:2616590	G	A	114	0.140	98	37.918	2.457	16	37.250	3.109	98	15	TMC2	exonic	synonymous_SNV
GBM_A_T1--5	chr20:2616590	G	A	55	0.327	36	37.944	2.797	18	37.389	3.274	36	18	TMC2	exonic	synonymous_SNV
GBM_A_T1--6	chr20:2616590	G	A	141	0.340	92	36.424	3.915	48	36.625	4.555	90	44	TMC2	exonic	synonymous_SNV
GBM_A_T1--7	chr20:2616590	G	A	125	0.448	69	36.971	3.899	56	36.536	3.511	65	54	TMC2	exonic	synonymous_SNV
GBM_A_T1--8	chr20:2616590	G	A	137	0.285	98	36.714	3.834	39	37.000	3.017	93	39	TMC2	exonic	synonymous_SNV
GBM_A_T1--GL	chr20:2616590	G	NA	142	0	142	35.951	4.933	0	0	0	129	0	TMC2	exonic	synonymous_SNV
GBM_A_T1--1	chr20:29965200	C	NA	30	0	30	35.500	3.570	0	0	0	29	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr20:29965200	C	A	18	0.167	15	36.467	2.560	3	39.000	3.464	15	3	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr20:29965200	C	NA	36	0	36	36.250	3.166	0	0	0	35	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr20:29965200	C	NA	45	0	45	37.156	3.261	0	0	0	45	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr20:29965200	C	NA	23	0	23	37.174	3.010	0	0	0	23	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr20:29965200	C	NA	66	0	66	35.742	3.722	0	0	0	63	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr20:29965200	C	NA	51	0	51	35.510	3.501	0	0	0	50	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr20:29965200	C	NA	49	0	49	34.878	4.631	0	0	0	42	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr20:29965200	C	NA	75	0	75	35.600	4.097	0	0	0	71	0	DEFB119	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr20:33356389	C	T	28	0.179	23	38.826	2.570	5	39.200	1.643	23	5	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr20:33356389	C	NA	10	0	10	37.200	7.084	0	0	0	9	0	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr20:33356389	C	NA	34	0	34	38.029	3.196	0	0	0	34	0	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr20:33356389	C	T	24	0.042	23	38.000	2.374	1	41.000	0.000	23	1	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr20:33356389	C	NA	24	0	24	37.417	3.798	0	0	0	23	0	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr20:33356389	C	T	52	0.077	48	36.729	4.625	4	37.000	2.582	44	4	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr20:33356389	C	NA	43	0	43	36.419	5.586	0	0	0	40	0	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr20:33356389	C	T	44	0.068	41	37.829	2.915	3	38.333	2.517	41	3	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr20:33356389	C	NA	62	0	62	36.194	5.674	0	0	0	58	0	NCOA6	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr20:3721418	C	NA	28	0	28	35.071	3.054	0	0	0	27	0	HSPA12B	intronic	NA
GBM_A_T1--2	chr20:3721418	C	NA	14	0	14	35.786	3.309	0	0	0	13	0	HSPA12B	intronic	NA
GBM_A_T1--3	chr20:3721418	C	NA	18	0	18	34.889	3.142	0	0	0	17	0	HSPA12B	intronic	NA
GBM_A_T1--4	chr20:3721418	C	NA	26	0	26	35.308	2.739	0	0	0	26	0	HSPA12B	intronic	NA
GBM_A_T1--5	chr20:3721418	C	A	26	0.154	22	36.273	3.210	4	36.750	2.062	22	4	HSPA12B	intronic	NA
GBM_A_T1--6	chr20:3721418	C	NA	31	0	31	35.129	3.766	0	0	0	29	0	HSPA12B	intronic	NA
GBM_A_T1--7	chr20:3721418	C	NA	34	0	34	33.971	5.818	0	0	0	32	0	HSPA12B	intronic	NA
GBM_A_T1--8	chr20:3721418	C	NA	16	0	16	35.000	3.011	0	0	0	15	0	HSPA12B	intronic	NA
GBM_A_T1--GL	chr20:3721418	C	NA	48	0	48	33.750	5.176	0	0	0	42	0	HSPA12B	intronic	NA
GBM_A_T1--1	chr20:47863866	C	NA	28	0	28	37.250	3.273	0	0	0	28	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr20:47863866	C	NA	17	0	17	35.353	4.015	0	0	0	15	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr20:47863866	C	A	27	0.185	22	37.545	3.004	5	36.400	2.966	22	5	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr20:47863866	C	NA	23	0	23	37.348	2.145	0	0	0	23	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr20:47863866	C	NA	31	0	31	36.355	3.028	0	0	0	31	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr20:47863866	C	NA	23	0	23	35.217	6.452	0	0	0	21	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr20:47863866	C	NA	19	0	19	35.158	4.694	0	0	0	18	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr20:47863866	C	NA	26	0	26	36.885	2.819	0	0	0	26	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr20:47863866	C	NA	57	0	56	35.411	3.870	0	0	0	51	0	ZNFX1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr20:50768723	G	NA	24	0	24	35.792	4.032	0	0	0	23	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr20:50768723	G	NA	11	0	11	36.091	4.323	0	0	0	10	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr20:50768723	G	NA	22	0	22	36.864	3.616	0	0	0	21	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr20:50768723	G	A	20	0.200	16	36.688	3.554	4	34.500	3.317	15	4	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr20:50768723	G	NA	25	0	25	37.320	2.734	0	0	0	25	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr20:50768723	G	NA	35	0	35	36.714	2.865	0	0	0	35	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr20:50768723	G	NA	37	0	37	35.622	5.550	0	0	0	35	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr20:50768723	G	NA	28	0	28	36.143	3.159	0	0	0	27	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr20:50768723	G	NA	73	0	72	35.569	4.720	0	0	0	63	0	ZFP64	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr20:7964390	C	NA	33	0	33	38.697	2.856	0	0	0	33	0	TMX4	intronic	NA
GBM_A_T1--2	chr20:7964390	C	NA	15	0	15	39.667	1.799	0	0	0	15	0	TMX4	intronic	NA
GBM_A_T1--3	chr20:7964390	C	A	25	0.040	24	38.917	3.063	1	41.000	0.000	24	1	TMX4	intronic	NA
GBM_A_T1--4	chr20:7964390	C	NA	16	0	15	38.467	4.406	0	0	0	14	0	TMX4	intronic	NA
GBM_A_T1--5	chr20:7964390	C	A	15	0.200	12	38.667	1.923	3	40.000	1.732	12	3	TMX4	intronic	NA
GBM_A_T1--6	chr20:7964390	C	NA	37	0	37	38.297	3.231	0	0	0	37	0	TMX4	intronic	NA
GBM_A_T1--7	chr20:7964390	C	NA	28	0	28	37.821	3.068	0	0	0	28	0	TMX4	intronic	NA
GBM_A_T1--8	chr20:7964390	C	NA	39	0	39	38.051	5.680	0	0	0	37	0	TMX4	intronic	NA
GBM_A_T1--GL	chr20:7964390	C	NA	49	0	49	36.735	5.957	0	0	0	44	0	TMX4	intronic	NA
GBM_A_T1--1	chr20:7982232	C	NA	50	0	50	38.020	4.340	0	0	0	48	0	TMX4	intronic	NA
GBM_A_T1--2	chr20:7982232	C	A	21	0.238	16	39.188	2.228	5	39.000	2.828	16	5	TMX4	intronic	NA
GBM_A_T1--3	chr20:7982232	C	NA	45	0	45	37.467	5.699	0	0	0	42	0	TMX4	intronic	NA
GBM_A_T1--4	chr20:7982232	C	NA	51	0	51	38.078	3.867	0	0	0	50	0	TMX4	intronic	NA
GBM_A_T1--5	chr20:7982232	C	NA	37	0	37	37.324	6.403	0	0	0	34	0	TMX4	intronic	NA
GBM_A_T1--6	chr20:7982232	C	NA	45	0	45	38.089	3.759	0	0	0	43	0	TMX4	intronic	NA
GBM_A_T1--7	chr20:7982232	C	NA	58	0	58	37.259	5.643	0	0	0	54	0	TMX4	intronic	NA
GBM_A_T1--8	chr20:7982232	C	NA	59	0	59	38.356	3.215	0	0	0	58	0	TMX4	intronic	NA
GBM_A_T1--GL	chr20:7982232	C	NA	49	0	49	37.061	4.064	0	0	0	48	0	TMX4	intronic	NA
GBM_A_T1--1	chr2:101611883	C	NA	31	0	31	35.903	2.481	0	0	0	31	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:101611883	C	NA	11	0	11	34.909	2.212	0	0	0	10	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:101611883	C	NA	21	0	21	35.286	3.717	0	0	0	20	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:101611883	C	NA	13	0	13	35.846	3.826	0	0	0	12	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:101611883	C	NA	13	0	13	36.077	2.216	0	0	0	13	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:101611883	C	NA	23	0	23	33.696	5.138	0	0	0	18	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:101611883	C	NA	24	0	24	33.583	6.698	0	0	0	22	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:101611883	C	A	23	0.174	19	35.105	2.580	4	35.750	2.363	19	4	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:101611883	C	NA	45	0	45	35.067	4.745	0	0	0	42	0	NPAS2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr21:11096677	C	NA	23	0	23	35.261	4.223	0	0	0	22	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--2	chr21:11096677	C	T	14	0.214	11	37.091	4.158	3	38.000	3.000	10	3	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--3	chr21:11096677	C	T	19	0.053	18	36.167	5.339	1	36.000	0.000	17	1	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--4	chr21:11096677	C	T	30	0.233	23	36.957	4.838	7	38.000	4.472	22	6	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--5	chr21:11096677	C	T	28	0.071	26	36.154	6.485	2	41.000	0.000	24	2	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--6	chr21:11096677	C	NA	26	0	26	36.077	3.632	0	0	0	25	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--7	chr21:11096677	C	T	36	0.139	29	35.931	3.751	5	38.400	2.191	28	5	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--8	chr21:11096677	C	NA	31	0	31	37.387	3.008	0	0	0	31	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--GL	chr21:11096677	C	NA	47	0	47	36.085	4.323	0	0	0	45	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
GBM_A_T1--1	chr2:116593694	A	T	18	0.222	14	38.143	2.143	4	34.000	4.830	14	3	DPP10	intronic	NA
GBM_A_T1--2	chr2:116593694	A	NA	10	0	10	34.700	5.813	0	0	0	7	0	DPP10	intronic	NA
GBM_A_T1--3	chr2:116593694	A	NA	12	0	12	38.167	1.992	0	0	0	12	0	DPP10	intronic	NA
GBM_A_T1--4	chr2:116593694	A	T	11	0.091	10	37.500	2.877	1	39.000	0.000	10	1	DPP10	intronic	NA
GBM_A_T1--5	chr2:116593694	A	NA	14	0	14	37.714	4.214	0	0	0	13	0	DPP10	intronic	NA
GBM_A_T1--6	chr2:116593694	A	NA	13	0	13	37.154	2.794	0	0	0	13	0	DPP10	intronic	NA
GBM_A_T1--7	chr2:116593694	A	NA	16	0	16	36.625	3.403	0	0	0	15	0	DPP10	intronic	NA
GBM_A_T1--8	chr2:116593694	A	T	23	0.087	21	37.095	3.081	2	37.500	2.121	20	2	DPP10	intronic	NA
GBM_A_T1--GL	chr2:116593694	A	NA	40	0	40	33.875	7.985	0	0	0	34	0	DPP10	intronic	NA
GBM_A_T1--1	chr2:122227869	C	T	86	0.244	65	38.446	2.773	21	33.286	2.777	64	20	CLASP1	intronic	NA
GBM_A_T1--2	chr2:122227869	C	T	65	0.169	54	38.630	4.275	11	33.909	1.375	51	11	CLASP1	intronic	NA
GBM_A_T1--3	chr2:122227869	C	T	77	0.234	59	38.390	3.206	18	33.889	1.231	58	18	CLASP1	intronic	NA
GBM_A_T1--4	chr2:122227869	C	T	79	0.241	60	38.400	3.351	19	33.105	1.560	57	19	CLASP1	intronic	NA
GBM_A_T1--5	chr2:122227869	C	T	64	0.156	54	39.093	2.497	10	33.200	1.135	53	10	CLASP1	intronic	NA
GBM_A_T1--6	chr2:122227869	C	T	98	0.194	78	35.808	7.281	19	33.421	1.835	71	19	CLASP1	intronic	NA
GBM_A_T1--7	chr2:122227869	C	T	92	0.261	68	36.544	5.516	24	34.000	1.319	63	24	CLASP1	intronic	NA
GBM_A_T1--8	chr2:122227869	C	NA	64	0	64	37.297	3.303	0	0	0	62	0	CLASP1	intronic	NA
GBM_A_T1--GL	chr2:122227869	C	NA	61	0	61	37.295	4.631	0	0	0	57	0	CLASP1	intronic	NA
GBM_A_T1--1	chr2:127806030	C	NA	30	0	30	36.633	2.220	0	0	0	30	0	BIN1	UTR3	NA
GBM_A_T1--2	chr2:127806030	C	A	17	0.176	14	33.857	4.959	3	36.333	4.163	11	3	BIN1	UTR3	NA
GBM_A_T1--3	chr2:127806030	C	NA	24	0	24	37.083	3.450	0	0	0	23	0	BIN1	UTR3	NA
GBM_A_T1--4	chr2:127806030	C	NA	31	0	31	36.387	2.667	0	0	0	31	0	BIN1	UTR3	NA
GBM_A_T1--5	chr2:127806030	C	NA	21	0	21	34.810	2.892	0	0	0	20	0	BIN1	UTR3	NA
GBM_A_T1--6	chr2:127806030	C	NA	14	0	14	36.429	6.235	0	0	0	12	0	BIN1	UTR3	NA
GBM_A_T1--7	chr2:127806030	C	NA	22	0	22	36.045	5.516	0	0	0	20	0	BIN1	UTR3	NA
GBM_A_T1--8	chr2:127806030	C	NA	26	0	26	35.308	6.485	0	0	0	25	0	BIN1	UTR3	NA
GBM_A_T1--GL	chr2:127806030	C	NA	39	0	39	35.410	5.025	0	0	0	35	0	BIN1	UTR3	NA
GBM_A_T1--1	chr2:128345989	C	NA	46	0	46	34.435	5.935	0	0	0	40	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:128345989	C	G	16	0.188	13	31.538	10.276	3	36.667	2.887	10	3	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:128345989	C	NA	31	0	31	35.677	3.902	0	0	0	29	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:128345989	C	NA	26	0	26	35.808	3.213	0	0	0	25	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:128345989	C	NA	35	0	35	35.629	4.023	0	0	0	32	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:128345989	C	NA	44	0	43	33.837	6.615	0	0	0	36	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:128345989	C	NA	48	0	48	33.542	6.510	0	0	0	42	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:128345989	C	NA	53	0	53	35.113	5.380	0	0	0	45	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:128345989	C	NA	94	0	94	35.117	4.597	0	0	0	83	0	MYO7B	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr21:37422717	C	A	34	0.147	29	38.276	2.840	5	38.600	3.286	29	5	SETD4	intronic	NA
GBM_A_T1--2	chr21:37422717	C	NA	22	0	22	36.000	4.588	0	0	0	21	0	SETD4	intronic	NA
GBM_A_T1--3	chr21:37422717	C	NA	68	0	68	37.162	2.800	0	0	0	68	0	SETD4	intronic	NA
GBM_A_T1--4	chr21:37422717	C	NA	50	0	50	36.800	3.017	0	0	0	50	0	SETD4	intronic	NA
GBM_A_T1--5	chr21:37422717	C	NA	43	0	43	36.953	2.944	0	0	0	42	0	SETD4	intronic	NA
GBM_A_T1--6	chr21:37422717	C	NA	59	0	59	36.153	4.533	0	0	0	56	0	SETD4	intronic	NA
GBM_A_T1--7	chr21:37422717	C	NA	53	0	53	35.170	5.056	0	0	0	47	0	SETD4	intronic	NA
GBM_A_T1--8	chr21:37422717	C	NA	69	0	69	35.971	5.308	0	0	0	65	0	SETD4	intronic	NA
GBM_A_T1--GL	chr21:37422717	C	NA	173	0	173	35.994	4.700	0	0	0	164	0	SETD4	intronic	NA
GBM_A_T1--1	chr2:137814043	G	NA	26	0	26	37.269	6.366	0	0	0	25	0	THSD7B	exonic	unknown
GBM_A_T1--2	chr2:137814043	G	A	19	0.316	13	37.308	4.211	6	35.167	4.215	12	5	THSD7B	exonic	unknown
GBM_A_T1--3	chr2:137814043	G	NA	33	0	33	38.091	3.176	0	0	0	33	0	THSD7B	exonic	unknown
GBM_A_T1--4	chr2:137814043	G	NA	26	0	26	37.500	3.314	0	0	0	25	0	THSD7B	exonic	unknown
GBM_A_T1--5	chr2:137814043	G	NA	22	0	22	37.182	2.737	0	0	0	22	0	THSD7B	exonic	unknown
GBM_A_T1--6	chr2:137814043	G	NA	30	0	30	36.167	3.485	0	0	0	29	0	THSD7B	exonic	unknown
GBM_A_T1--7	chr2:137814043	G	NA	27	0	27	35.481	6.129	0	0	0	26	0	THSD7B	exonic	unknown
GBM_A_T1--8	chr2:137814043	G	NA	24	0	24	36.000	6.386	0	0	0	22	0	THSD7B	exonic	unknown
GBM_A_T1--GL	chr2:137814043	G	NA	63	0	63	37.206	4.311	0	0	0	59	0	THSD7B	exonic	unknown
GBM_A_T1--1	chr21:43829597	C	NA	41	0	41	36.805	4.545	0	0	0	39	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--2	chr21:43829597	C	A	22	0.182	18	37.278	3.801	4	37.000	2.944	17	4	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--3	chr21:43829597	C	NA	30	0	30	37.367	3.479	0	0	0	29	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--4	chr21:43829597	C	NA	40	0	40	36.100	5.647	0	0	0	37	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--5	chr21:43829597	C	NA	19	0	19	37.000	3.055	0	0	0	19	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--6	chr21:43829597	C	NA	48	0	48	36.042	5.367	0	0	0	44	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--7	chr21:43829597	C	NA	29	0	29	36.069	4.985	0	0	0	27	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--8	chr21:43829597	C	NA	37	0	37	37.432	3.404	0	0	0	36	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--GL	chr21:43829597	C	NA	60	0	60	37.217	3.796	0	0	0	58	0	UBASH3A	exonic	synonymous_SNV
GBM_A_T1--1	chr2:159530157	C	NA	38	0	38	38.026	3.990	0	0	0	37	0	PKP4	intronic	NA
GBM_A_T1--2	chr2:159530157	C	NA	11	0	11	34.636	5.767	0	0	0	9	0	PKP4	intronic	NA
GBM_A_T1--3	chr2:159530157	C	NA	28	0	28	37.464	3.901	0	0	0	28	0	PKP4	intronic	NA
GBM_A_T1--4	chr2:159530157	C	NA	39	0	39	37.436	3.733	0	0	0	38	0	PKP4	intronic	NA
GBM_A_T1--5	chr2:159530157	C	A	21	0.190	17	37.471	4.094	4	37.250	2.217	17	4	PKP4	intronic	NA
GBM_A_T1--6	chr2:159530157	C	NA	34	0	34	37.382	4.030	0	0	0	33	0	PKP4	intronic	NA
GBM_A_T1--7	chr2:159530157	C	NA	28	0	28	37.714	3.089	0	0	0	28	0	PKP4	intronic	NA
GBM_A_T1--8	chr2:159530157	C	NA	43	0	43	36.279	5.662	0	0	0	38	0	PKP4	intronic	NA
GBM_A_T1--GL	chr2:159530157	C	NA	77	0	77	36.740	4.789	0	0	0	73	0	PKP4	intronic	NA
GBM_A_T1--1	chr2:176983610	A	NA	73	0	36	36.639	2.100	0	0	0	36	0	HOXD10	intronic	NA
GBM_A_T1--2	chr2:176983610	A	NA	41	0	21	36.000	2.074	0	0	0	21	0	HOXD10	intronic	NA
GBM_A_T1--3	chr2:176983610	A	C	67	0.134	33	35.788	3.603	9	36.222	2.224	32	9	HOXD10	intronic	NA
GBM_A_T1--4	chr2:176983610	A	NA	63	0	29	36.276	2.086	0	0	0	29	0	HOXD10	intronic	NA
GBM_A_T1--5	chr2:176983610	A	NA	48	0	28	35.714	2.275	0	0	0	28	0	HOXD10	intronic	NA
GBM_A_T1--6	chr2:176983610	A	NA	88	0	50	34.240	5.263	0	0	0	46	0	HOXD10	intronic	NA
GBM_A_T1--7	chr2:176983610	A	NA	91	0	45	35.378	3.032	0	0	0	43	0	HOXD10	intronic	NA
GBM_A_T1--8	chr2:176983610	A	NA	81	0	41	35.220	3.410	0	0	0	40	0	HOXD10	intronic	NA
GBM_A_T1--GL	chr2:176983610	A	NA	89	0	50	35.420	2.793	0	0	0	50	0	HOXD10	intronic	NA
GBM_A_T1--1	chr2:182358160	C	A	32	0.031	31	36.032	4.708	1	38.000	0.000	29	1	ITGA4	intronic	NA
GBM_A_T1--2	chr2:182358160	C	NA	10	0	10	36.900	2.283	0	0	0	10	0	ITGA4	intronic	NA
GBM_A_T1--3	chr2:182358160	C	NA	31	0	31	37.065	3.540	0	0	0	30	0	ITGA4	intronic	NA
GBM_A_T1--4	chr2:182358160	C	NA	22	0	22	37.591	3.528	0	0	0	21	0	ITGA4	intronic	NA
GBM_A_T1--5	chr2:182358160	C	A	18	0.167	15	37.533	2.924	3	37.667	1.155	15	3	ITGA4	intronic	NA
GBM_A_T1--6	chr2:182358160	C	A	29	0.069	27	36.296	4.008	2	36.500	6.364	27	2	ITGA4	intronic	NA
GBM_A_T1--7	chr2:182358160	C	NA	19	0	19	35.368	4.425	0	0	0	18	0	ITGA4	intronic	NA
GBM_A_T1--8	chr2:182358160	C	NA	54	0	53	36.113	3.625	0	0	0	50	0	ITGA4	intronic	NA
GBM_A_T1--GL	chr2:182358160	C	NA	42	0	42	35.357	6.480	0	0	0	40	0	ITGA4	intronic	NA
GBM_A_T1--1	chr2:182412643	A	NA	26	0	26	37.154	6.745	0	0	0	24	0	CERKL	intronic	NA
GBM_A_T1--2	chr2:182412643	A	C	18	0.111	16	36.562	5.228	2	35.000	0.000	14	2	CERKL	intronic	NA
GBM_A_T1--3	chr2:182412643	A	NA	31	0	31	37.484	3.687	0	0	0	30	0	CERKL	intronic	NA
GBM_A_T1--4	chr2:182412643	A	NA	31	0	31	37.710	3.542	0	0	0	30	0	CERKL	intronic	NA
GBM_A_T1--5	chr2:182412643	A	C	20	0.050	19	38.737	2.746	1	31.000	0.000	19	1	CERKL	intronic	NA
GBM_A_T1--6	chr2:182412643	A	C	50	0.200	40	37.000	3.863	10	33.000	3.916	39	9	CERKL	intronic	NA
GBM_A_T1--7	chr2:182412643	A	C	38	0.053	36	37.111	4.413	2	30.000	7.071	35	1	CERKL	intronic	NA
GBM_A_T1--8	chr2:182412643	A	NA	44	0	44	36.932	3.890	0	0	0	43	0	CERKL	intronic	NA
GBM_A_T1--GL	chr2:182412643	A	NA	57	0	57	36.456	3.616	0	0	0	55	0	CERKL	intronic	NA
GBM_A_T1--1	chr2:215633979	C	NA	121	0	121	36.653	4.328	0	0	0	113	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:215633979	C	NA	51	0	51	36.824	3.686	0	0	0	47	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:215633979	C	NA	116	0	116	37.405	4.464	0	0	0	113	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:215633979	C	NA	117	0	117	37.829	2.902	0	0	0	116	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:215633979	C	NA	76	0	76	36.789	3.481	0	0	0	73	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:215633979	C	NA	186	0	186	36.269	4.148	0	0	0	177	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:215633979	C	G	128	0.375	80	35.013	5.090	48	33.583	5.173	74	40	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:215633979	C	NA	170	0	168	35.518	5.454	0	0	0	149	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:215633979	C	NA	154	0	154	35.539	5.052	0	0	0	139	0	BARD1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr2:216274876	G	NA	54	0	53	36.736	3.601	0	0	0	52	0	FN1	intronic	NA
GBM_A_T1--2	chr2:216274876	G	NA	31	0	31	37.161	4.591	0	0	0	30	0	FN1	intronic	NA
GBM_A_T1--3	chr2:216274876	G	NA	56	0	54	37.093	3.298	0	0	0	53	0	FN1	intronic	NA
GBM_A_T1--4	chr2:216274876	G	A	59	0.051	50	37.480	3.247	3	32.333	2.309	49	3	FN1	intronic	NA
GBM_A_T1--5	chr2:216274876	G	A	42	0.262	27	34.333	5.936	11	31.636	5.372	22	10	FN1	intronic	NA
GBM_A_T1--6	chr2:216274876	G	NA	56	0	56	36.464	4.525	0	0	0	52	0	FN1	intronic	NA
GBM_A_T1--7	chr2:216274876	G	A	59	0.017	54	35.815	4.892	1	33.000	0.000	51	1	FN1	intronic	NA
GBM_A_T1--8	chr2:216274876	G	NA	71	0	70	36.400	4.454	0	0	0	63	0	FN1	intronic	NA
GBM_A_T1--GL	chr2:216274876	G	NA	94	0	93	35.140	6.128	0	0	0	81	0	FN1	intronic	NA
GBM_A_T1--1	chr2:216274877	T	NA	52	0	52	35.885	3.934	0	0	0	50	0	FN1	intronic	NA
GBM_A_T1--2	chr2:216274877	T	NA	30	0	30	35.567	6.246	0	0	0	26	0	FN1	intronic	NA
GBM_A_T1--3	chr2:216274877	T	NA	52	0	50	35.940	5.060	0	0	0	46	0	FN1	intronic	NA
GBM_A_T1--4	chr2:216274877	T	C	57	0.053	51	36.137	4.940	3	33.000	2.000	48	3	FN1	intronic	NA
GBM_A_T1--5	chr2:216274877	T	C	38	0.289	23	34.696	6.718	11	32.636	2.541	19	10	FN1	intronic	NA
GBM_A_T1--6	chr2:216274877	T	NA	55	0	55	35.745	4.960	0	0	0	49	0	FN1	intronic	NA
GBM_A_T1--7	chr2:216274877	T	C	55	0.018	52	34.692	5.693	1	35.000	0.000	43	1	FN1	intronic	NA
GBM_A_T1--8	chr2:216274877	T	NA	68	0	67	35.448	5.519	0	0	0	58	0	FN1	intronic	NA
GBM_A_T1--GL	chr2:216274877	T	NA	93	0	93	34.505	6.709	0	0	0	79	0	FN1	intronic	NA
GBM_A_T1--1	chr22:17063495	C	NA	20	0	20	36.950	3.364	0	0	0	20	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--2	chr22:17063495	C	NA	18	0	18	35.278	4.701	0	0	0	15	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--3	chr22:17063495	C	NA	23	0	23	37.087	4.177	0	0	0	21	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--4	chr22:17063495	C	NA	30	0	29	37.103	3.867	0	0	0	28	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--5	chr22:17063495	C	NA	24	0	24	36.375	3.831	0	0	0	24	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--6	chr22:17063495	C	NA	31	0	31	36.097	3.553	0	0	0	29	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--7	chr22:17063495	C	NA	36	0	36	37.056	2.927	0	0	0	36	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--8	chr22:17063495	C	A	40	0.150	34	36.206	4.284	6	37.000	2.098	31	6	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--GL	chr22:17063495	C	NA	83	0	83	35.771	4.085	0	0	0	78	0	OR11H1(dist=613691),CCT8L2(dist=8153)	intergenic	NA
GBM_A_T1--1	chr22:19029496	C	NA	21	0	21	33.238	9.262	0	0	0	17	0	DGCR2	intronic	NA
GBM_A_T1--2	chr22:19029496	C	NA	10	0	10	38.100	4.122	0	0	0	10	0	DGCR2	intronic	NA
GBM_A_T1--3	chr22:19029496	C	NA	18	0	18	35.778	4.209	0	0	0	17	0	DGCR2	intronic	NA
GBM_A_T1--4	chr22:19029496	C	NA	18	0	18	35.667	6.010	0	0	0	17	0	DGCR2	intronic	NA
GBM_A_T1--5	chr22:19029496	C	A	16	0.188	13	36.000	4.882	3	35.667	4.041	12	3	DGCR2	intronic	NA
GBM_A_T1--6	chr22:19029496	C	NA	23	0	23	36.261	7.700	0	0	0	21	0	DGCR2	intronic	NA
GBM_A_T1--7	chr22:19029496	C	NA	23	0	23	35.478	5.559	0	0	0	20	0	DGCR2	intronic	NA
GBM_A_T1--8	chr22:19029496	C	NA	28	0	28	33.679	7.318	0	0	0	21	0	DGCR2	intronic	NA
GBM_A_T1--GL	chr22:19029496	C	NA	40	0	40	34.875	5.841	0	0	0	36	0	DGCR2	intronic	NA
GBM_A_T1--1	chr22:21349167	C	NA	33	0	33	36.697	2.580	0	0	0	33	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--2	chr22:21349167	C	NA	14	0	14	34.714	3.583	0	0	0	13	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--3	chr22:21349167	C	NA	16	0	16	36.812	3.563	0	0	0	15	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--4	chr22:21349167	C	NA	36	0	36	37.333	2.995	0	0	0	36	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--5	chr22:21349167	C	A	12	0.250	9	37.333	3.240	3	35.667	2.082	9	3	LZTR1	exonic	stopgain_SNV
GBM_A_T1--6	chr22:21349167	C	NA	32	0	32	34.594	5.272	0	0	0	28	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--7	chr22:21349167	C	NA	28	0	28	34.714	5.616	0	0	0	25	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--8	chr22:21349167	C	NA	31	0	31	31.871	8.090	0	0	0	27	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--GL	chr22:21349167	C	NA	60	0	60	36.383	3.792	0	0	0	57	0	LZTR1	exonic	stopgain_SNV
GBM_A_T1--1	chr22:21384052	C	A	20	0.050	19	37.737	2.766	1	34.000	0.000	19	1	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr22:21384052	C	NA	21	0	21	34.714	7.721	0	0	0	19	0	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr22:21384052	C	NA	19	0	19	36.737	3.603	0	0	0	19	0	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr22:21384052	C	A	26	0.154	22	37.091	3.191	4	36.750	2.872	22	4	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr22:21384052	C	A	25	0.040	24	36.042	4.248	1	33.000	0.000	22	1	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr22:21384052	C	NA	21	0	21	36.905	3.562	0	0	0	19	0	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr22:21384052	C	NA	19	0	19	32.211	9.187	0	0	0	17	0	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr22:21384052	C	A	12	0.083	11	37.545	2.583	1	35.000	0.000	11	1	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr22:21384052	C	NA	53	0	53	34.717	5.436	0	0	0	46	0	SLC7A4	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr22:21988531	C	NA	24	0	24	37.500	2.604	0	0	0	24	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr22:21988531	C	A	13	0.231	10	39.100	2.283	3	33.667	6.658	10	2	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr22:21988531	C	NA	29	0	29	36.862	3.044	0	0	0	29	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr22:21988531	C	NA	14	0	14	36.714	3.474	0	0	0	14	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr22:21988531	C	NA	15	0	15	37.267	3.262	0	0	0	15	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr22:21988531	C	NA	34	0	34	35.412	4.743	0	0	0	32	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr22:21988531	C	NA	20	0	20	36.100	4.154	0	0	0	19	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr22:21988531	C	NA	20	0	20	36.650	3.468	0	0	0	20	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr22:21988531	C	NA	43	0	43	36.791	4.422	0	0	0	41	0	CCDC116	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr22:24037629	C	T	35	0.029	33	36.152	3.134	1	40.000	0.000	33	1	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--2	chr22:24037629	C	NA	15	0	15	37.000	2.563	0	0	0	15	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--3	chr22:24037629	C	NA	24	0	24	35.792	3.413	0	0	0	23	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--4	chr22:24037629	C	NA	27	0	25	35.280	6.275	0	0	0	23	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--5	chr22:24037629	C	T	19	0.316	13	37.154	3.023	6	34.667	3.559	13	6	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--6	chr22:24037629	C	NA	32	0	32	35.312	4.107	0	0	0	31	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--7	chr22:24037629	C	T	40	0.025	39	35.385	3.282	1	31.000	0.000	37	1	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--8	chr22:24037629	C	NA	47	0	44	34.750	5.747	0	0	0	41	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--GL	chr22:24037629	C	NA	59	0	57	34.439	5.318	0	0	0	49	0	GUSBP11	ncRNA_exonic	NA
GBM_A_T1--1	chr22:24572323	C	NA	25	0	25	35.960	5.653	0	0	0	24	0	CABIN1	intronic	NA
GBM_A_T1--2	chr22:24572323	C	NA	11	0	11	38.000	3.000	0	0	0	11	0	CABIN1	intronic	NA
GBM_A_T1--3	chr22:24572323	C	NA	17	0	17	36.529	4.403	0	0	0	16	0	CABIN1	intronic	NA
GBM_A_T1--4	chr22:24572323	C	NA	14	0	14	36.286	5.889	0	0	0	12	0	CABIN1	intronic	NA
GBM_A_T1--5	chr22:24572323	C	NA	12	0	12	36.250	3.306	0	0	0	12	0	CABIN1	intronic	NA
GBM_A_T1--6	chr22:24572323	C	NA	23	0	23	33.739	5.047	0	0	0	20	0	CABIN1	intronic	NA
GBM_A_T1--7	chr22:24572323	C	NA	12	0	12	34.750	5.463	0	0	0	10	0	CABIN1	intronic	NA
GBM_A_T1--8	chr22:24572323	C	A	14	0.214	11	34.273	5.587	3	34.667	1.528	8	3	CABIN1	intronic	NA
GBM_A_T1--GL	chr22:24572323	C	NA	43	0	42	34.786	6.773	0	0	0	37	0	CABIN1	intronic	NA
GBM_A_T1--1	chr2:226447711	C	NA	42	0	41	34.244	5.885	0	0	0	37	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--2	chr2:226447711	C	A	14	0.214	11	37.364	2.501	3	33.667	2.517	11	3	NYAP2	exonic	synonymous_SNV
GBM_A_T1--3	chr2:226447711	C	A	43	0.047	41	34.561	5.315	2	37.000	2.828	38	2	NYAP2	exonic	synonymous_SNV
GBM_A_T1--4	chr2:226447711	C	NA	33	0	33	34.485	2.502	0	0	0	31	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--5	chr2:226447711	C	NA	19	0	19	35.105	6.488	0	0	0	17	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--6	chr2:226447711	C	A	39	0.026	38	33.974	5.669	1	39.000	0.000	33	1	NYAP2	exonic	synonymous_SNV
GBM_A_T1--7	chr2:226447711	C	NA	39	0	39	33.333	6.760	0	0	0	33	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--8	chr2:226447711	C	NA	37	0	37	32.514	5.834	0	0	0	31	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--GL	chr2:226447711	C	NA	76	0	76	33.461	5.763	0	0	0	63	0	NYAP2	exonic	synonymous_SNV
GBM_A_T1--1	chr2:227924815	C	A	114	0.298	80	38.175	3.329	34	34.059	5.216	77	33	COL4A4	intronic	NA
GBM_A_T1--2	chr2:227924815	C	A	33	0.182	27	38.667	4.699	6	35.000	0.000	26	6	COL4A4	intronic	NA
GBM_A_T1--3	chr2:227924815	C	A	70	0.171	58	37.103	6.609	12	34.667	0.778	54	12	COL4A4	intronic	NA
GBM_A_T1--4	chr2:227924815	C	A	78	0.051	73	38.110	5.666	4	27.000	14.697	71	3	COL4A4	intronic	NA
GBM_A_T1--5	chr2:227924815	C	A	70	0.257	52	37.519	5.472	18	34.556	0.856	50	18	COL4A4	intronic	NA
GBM_A_T1--6	chr2:227924815	C	A	87	0.023	85	36.647	5.464	2	35.000	0.000	77	2	COL4A4	intronic	NA
GBM_A_T1--7	chr2:227924815	C	A	89	0.180	73	37.342	5.601	16	34.625	1.500	68	15	COL4A4	intronic	NA
GBM_A_T1--8	chr2:227924815	C	NA	91	0	90	34.711	7.464	0	0	0	74	0	COL4A4	intronic	NA
GBM_A_T1--GL	chr2:227924815	C	NA	61	0	61	36.836	4.148	0	0	0	58	0	COL4A4	intronic	NA
GBM_A_T1--1	chr2:227924817	G	A	121	0.339	80	37.825	4.649	41	34.439	1.924	76	40	COL4A4	intronic	NA
GBM_A_T1--2	chr2:227924817	G	A	35	0.229	27	39.444	2.172	8	35.000	0.000	27	8	COL4A4	intronic	NA
GBM_A_T1--3	chr2:227924817	G	A	78	0.295	55	37.073	5.412	23	32.261	6.217	50	20	COL4A4	intronic	NA
GBM_A_T1--4	chr2:227924817	G	A	86	0.163	71	38.507	2.585	14	33.571	2.138	70	13	COL4A4	intronic	NA
GBM_A_T1--5	chr2:227924817	G	A	77	0.351	50	37.840	3.419	27	34.852	0.534	48	27	COL4A4	intronic	NA
GBM_A_T1--6	chr2:227924817	G	A	90	0.078	83	36.819	5.128	7	30.571	8.404	77	6	COL4A4	intronic	NA
GBM_A_T1--7	chr2:227924817	G	A	95	0.232	71	37.507	4.858	22	34.364	1.136	67	22	COL4A4	intronic	NA
GBM_A_T1--8	chr2:227924817	G	A	91	0.044	86	35.651	6.700	4	35.000	3.266	76	4	COL4A4	intronic	NA
GBM_A_T1--GL	chr2:227924817	G	NA	61	0	61	36.393	4.337	0	0	0	57	0	COL4A4	intronic	NA
GBM_A_T1--1	chr2:227969015	G	NA	10	0	10	35.500	10.255	0	0	0	9	0	COL4A4	intronic	NA
GBM_A_T1--2	chr2:227969015	G	NA	16	0	16	35.875	4.380	0	0	0	15	0	COL4A4	intronic	NA
GBM_A_T1--3	chr2:227969015	G	NA	19	0	19	37.421	3.849	0	0	0	18	0	COL4A4	intronic	NA
GBM_A_T1--4	chr2:227969015	G	A	19	0.053	18	35.056	8.419	1	38.000	0.000	16	1	COL4A4	intronic	NA
GBM_A_T1--5	chr2:227969015	G	A	17	0.235	13	36.385	3.948	4	33.250	8.921	12	3	COL4A4	intronic	NA
GBM_A_T1--6	chr2:227969015	G	A	16	0.062	15	35.600	5.841	1	41.000	0.000	13	1	COL4A4	intronic	NA
GBM_A_T1--7	chr2:227969015	G	NA	24	0	24	36.917	4.442	0	0	0	23	0	COL4A4	intronic	NA
GBM_A_T1--8	chr2:227969015	G	A	31	0.032	30	36.400	4.875	1	40.000	0.000	28	1	COL4A4	intronic	NA
GBM_A_T1--GL	chr2:227969015	G	NA	58	0	58	35.845	5.727	0	0	0	55	0	COL4A4	intronic	NA
GBM_A_T1--1	chr22:29885567	A	C	84	0.202	67	37.881	4.354	17	35.235	2.195	64	17	NEFH	exonic	synonymous_SNV
GBM_A_T1--2	chr22:29885567	A	C	38	0.105	34	37.265	3.987	4	35.250	1.258	32	4	NEFH	exonic	synonymous_SNV
GBM_A_T1--3	chr22:29885567	A	C	89	0.124	78	38.038	3.536	11	35.545	1.508	76	11	NEFH	exonic	synonymous_SNV
GBM_A_T1--4	chr22:29885567	A	C	81	0.123	71	37.183	5.038	10	35.000	1.826	69	10	NEFH	exonic	synonymous_SNV
GBM_A_T1--5	chr22:29885567	A	C	76	0.145	65	37.631	3.798	11	33.636	5.537	62	9	NEFH	exonic	synonymous_SNV
GBM_A_T1--6	chr22:29885567	A	C	122	0.115	108	36.926	4.346	14	30.143	8.179	102	10	NEFH	exonic	synonymous_SNV
GBM_A_T1--7	chr22:29885567	A	C	124	0.113	110	36.282	4.847	14	34.643	2.098	104	14	NEFH	exonic	synonymous_SNV
GBM_A_T1--8	chr22:29885567	A	C	126	0.143	108	37.019	3.823	18	33.056	7.025	103	16	NEFH	exonic	synonymous_SNV
GBM_A_T1--GL	chr22:29885567	A	NA	274	0	274	35.664	5.613	0	0	0	241	0	NEFH	exonic	synonymous_SNV
GBM_A_T1--1	chr22:30689160	G	NA	13	0	13	39.000	2.550	0	0	0	13	0	TBC1D10A	intronic	NA
GBM_A_T1--2	chr22:30689160	G	NA	10	0	10	37.000	5.354	0	0	0	9	0	TBC1D10A	intronic	NA
GBM_A_T1--3	chr22:30689160	G	NA	12	0	12	35.667	3.846	0	0	0	12	0	TBC1D10A	intronic	NA
GBM_A_T1--4	chr22:30689160	G	NA	11	0	11	36.455	4.298	0	0	0	10	0	TBC1D10A	intronic	NA
GBM_A_T1--5	chr22:30689160	G	NA	17	0	17	34.000	8.448	0	0	0	14	0	TBC1D10A	intronic	NA
GBM_A_T1--6	chr22:30689160	G	NA	12	0	12	36.500	3.177	0	0	0	12	0	TBC1D10A	intronic	NA
GBM_A_T1--7	chr22:30689160	G	NA	17	0	17	33.647	5.454	0	0	0	12	0	TBC1D10A	intronic	NA
GBM_A_T1--8	chr22:30689160	G	A	15	0.200	12	33.833	6.506	3	34.667	0.577	10	3	TBC1D10A	intronic	NA
GBM_A_T1--GL	chr22:30689160	G	NA	37	0	37	33.243	6.759	0	0	0	32	0	TBC1D10A	intronic	NA
GBM_A_T1--1	chr22:30925058	C	NA	27	0	27	36.963	3.535	0	0	0	26	0	SEC14L6	intronic	NA
GBM_A_T1--2	chr22:30925058	C	A	15	0.200	12	36.917	2.968	3	36.333	3.215	12	3	SEC14L6	intronic	NA
GBM_A_T1--3	chr22:30925058	C	NA	32	0	32	37.062	3.767	0	0	0	31	0	SEC14L6	intronic	NA
GBM_A_T1--4	chr22:30925058	C	NA	24	0	24	36.208	6.916	0	0	0	22	0	SEC14L6	intronic	NA
GBM_A_T1--5	chr22:30925058	C	NA	26	0	26	36.423	4.337	0	0	0	25	0	SEC14L6	intronic	NA
GBM_A_T1--6	chr22:30925058	C	A	33	0.030	30	35.567	3.997	1	33.000	0.000	28	1	SEC14L6	intronic	NA
GBM_A_T1--7	chr22:30925058	C	NA	38	0	38	36.026	6.184	0	0	0	34	0	SEC14L6	intronic	NA
GBM_A_T1--8	chr22:30925058	C	NA	32	0	32	34.688	5.533	0	0	0	27	0	SEC14L6	intronic	NA
GBM_A_T1--GL	chr22:30925058	C	NA	60	0	60	35.333	4.761	0	0	0	54	0	SEC14L6	intronic	NA
GBM_A_T1--1	chr22:37331795	C	A	21	0.190	16	33.812	6.483	4	35.000	4.320	13	3	CSF2RB	intronic	NA
GBM_A_T1--2	chr22:37331795	C	NA	14	0	14	31.071	5.980	0	0	0	9	0	CSF2RB	intronic	NA
GBM_A_T1--3	chr22:37331795	C	NA	16	0	16	34.875	2.986	0	0	0	16	0	CSF2RB	intronic	NA
GBM_A_T1--4	chr22:37331795	C	A	15	0.067	13	32.538	5.174	1	40.000	0.000	10	1	CSF2RB	intronic	NA
GBM_A_T1--5	chr22:37331795	C	NA	22	0	21	33.476	4.297	0	0	0	17	0	CSF2RB	intronic	NA
GBM_A_T1--6	chr22:37331795	C	NA	28	0	28	32.857	3.514	0	0	0	25	0	CSF2RB	intronic	NA
GBM_A_T1--7	chr22:37331795	C	NA	24	0	23	31.870	7.213	0	0	0	19	0	CSF2RB	intronic	NA
GBM_A_T1--8	chr22:37331795	C	NA	29	0	29	33.655	5.136	0	0	0	23	0	CSF2RB	intronic	NA
GBM_A_T1--GL	chr22:37331795	C	NA	42	0	42	31.214	4.936	0	0	0	30	0	CSF2RB	intronic	NA
GBM_A_T1--1	chr22:41612142	G	NA	24	0	24	37.667	3.691	0	0	0	22	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--2	chr22:41612142	G	NA	12	0	12	37.750	3.306	0	0	0	12	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--3	chr22:41612142	G	NA	27	0	27	37.778	3.355	0	0	0	26	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--4	chr22:41612142	G	NA	26	0	26	37.654	3.543	0	0	0	25	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--5	chr22:41612142	G	A	17	0.176	14	36.143	6.491	3	39.000	3.464	11	3	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--6	chr22:41612142	G	NA	40	0	40	35.725	4.426	0	0	0	37	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--7	chr22:41612142	G	NA	32	0	32	36.406	5.060	0	0	0	29	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--8	chr22:41612142	G	NA	37	0	37	37.189	4.248	0	0	0	34	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--GL	chr22:41612142	G	NA	62	0	60	35.233	6.152	0	0	0	54	0	L3MBTL2(NM_031488:exon4:c.397-1G>A)	splicing	NA
GBM_A_T1--1	chr22:42428689	C	NA	17	0	17	36.765	7.259	0	0	0	16	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--2	chr22:42428689	C	A	15	0.200	12	34.500	9.070	3	36.333	2.309	10	3	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--3	chr22:42428689	C	NA	12	0	12	37.167	5.006	0	0	0	10	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--4	chr22:42428689	C	NA	18	0	18	39.667	2.301	0	0	0	18	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--5	chr22:42428689	C	NA	11	0	11	40.091	1.136	0	0	0	11	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--6	chr22:42428689	C	NA	24	0	23	38.696	3.309	0	0	0	22	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--7	chr22:42428689	C	NA	23	0	23	38.043	3.483	0	0	0	23	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--8	chr22:42428689	C	NA	24	0	24	38.125	3.040	0	0	0	24	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--GL	chr22:42428689	C	NA	35	0	35	39.543	2.187	0	0	0	35	0	WBP2NL(dist=4212),NAGA(dist=25649)	intergenic	NA
GBM_A_T1--1	chr22:46930666	T	NA	18	0	18	36.556	3.714	0	0	0	17	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr22:46930666	T	NA	21	0	21	35.048	6.614	0	0	0	18	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr22:46930666	T	NA	33	0	33	35.667	3.425	0	0	0	31	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr22:46930666	T	A	13	0.231	10	36.600	3.239	3	36.000	1.000	10	3	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr22:46930666	T	NA	34	0	34	36.000	3.717	0	0	0	33	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr22:46930666	T	NA	26	0	26	35.077	4.995	0	0	0	22	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr22:46930666	T	NA	39	0	39	35.436	5.457	0	0	0	36	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr22:46930666	T	NA	32	0	32	35.094	4.417	0	0	0	30	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr22:46930666	T	NA	63	0	62	34.806	4.704	0	0	0	55	0	CELSR1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr2:25965070	C	NA	38	0	38	36.658	4.370	0	0	0	35	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:25965070	C	T	27	0.185	22	37.273	3.120	5	32.800	11.367	22	4	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:25965070	C	NA	33	0	33	36.636	3.681	0	0	0	32	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:25965070	C	NA	27	0	27	35.519	4.127	0	0	0	25	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:25965070	C	NA	30	0	29	35.862	3.420	0	0	0	28	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:25965070	C	T	41	0.024	39	33.179	6.851	1	39.000	0.000	35	1	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:25965070	C	NA	36	0	36	34.722	4.103	0	0	0	33	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:25965070	C	NA	37	0	37	34.486	5.891	0	0	0	33	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:25965070	C	NA	81	0	81	33.889	7.382	0	0	0	69	0	ASXL2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr2:26686957	C	NA	36	0	36	36.083	2.822	0	0	0	35	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:26686957	C	A	18	0.222	14	36.143	2.770	4	36.000	3.830	14	4	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:26686957	C	NA	37	0	37	36.216	3.425	0	0	0	35	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:26686957	C	NA	40	0	40	36.300	2.989	0	0	0	40	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:26686957	C	NA	30	0	30	35.867	3.115	0	0	0	30	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:26686957	C	NA	53	0	53	34.679	5.143	0	0	0	50	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:26686957	C	NA	33	0	33	36.273	5.381	0	0	0	31	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:26686957	C	NA	63	0	63	35.254	3.927	0	0	0	59	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:26686957	C	NA	81	0	81	35.728	4.427	0	0	0	76	0	OTOF	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr2:70905007	C	A	47	0.043	45	36.289	3.533	2	37.500	2.121	43	2	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr2:70905007	C	A	27	0.148	23	36.304	3.819	4	38.000	2.309	22	4	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr2:70905007	C	NA	58	0	58	37.052	3.097	0	0	0	57	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr2:70905007	C	NA	60	0	60	36.200	3.354	0	0	0	56	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr2:70905007	C	NA	38	0	38	35.684	3.354	0	0	0	35	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr2:70905007	C	NA	54	0	54	35.481	4.546	0	0	0	50	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr2:70905007	C	A	54	0.019	53	35.623	3.612	1	31.000	0.000	48	1	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr2:70905007	C	NA	71	0	71	36.310	2.718	0	0	0	70	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr2:70905007	C	NA	93	0	93	35.054	4.612	0	0	0	85	0	ADD2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr2:71829888	C	G	67	0.164	56	36.946	3.901	11	39.182	2.786	53	11	DYSF	intronic	NA
GBM_A_T1--2	chr2:71829888	C	NA	19	0	19	35.053	5.502	0	0	0	17	0	DYSF	intronic	NA
GBM_A_T1--3	chr2:71829888	C	NA	54	0	54	35.463	5.629	0	0	0	50	0	DYSF	intronic	NA
GBM_A_T1--4	chr2:71829888	C	NA	60	0	60	37.100	3.166	0	0	0	60	0	DYSF	intronic	NA
GBM_A_T1--5	chr2:71829888	C	NA	45	0	45	35.867	5.303	0	0	0	44	0	DYSF	intronic	NA
GBM_A_T1--6	chr2:71829888	C	G	53	0.019	52	34.712	6.378	1	32.000	0.000	45	1	DYSF	intronic	NA
GBM_A_T1--7	chr2:71829888	C	G	64	0.031	62	35.952	3.936	2	35.000	0.000	59	2	DYSF	intronic	NA
GBM_A_T1--8	chr2:71829888	C	G	46	0.087	42	36.310	3.929	4	32.250	11.117	41	3	DYSF	intronic	NA
GBM_A_T1--GL	chr2:71829888	C	NA	93	0	93	34.957	6.027	0	0	0	84	0	DYSF	intronic	NA
GBM_A_T1--1	chr2:73461447	C	NA	36	0	36	36.722	3.067	0	0	0	36	0	CCT7	UTR5	NA
GBM_A_T1--2	chr2:73461447	C	NA	11	0	11	36.182	2.892	0	0	0	11	0	CCT7	UTR5	NA
GBM_A_T1--3	chr2:73461447	C	NA	25	0	25	35.880	6.030	0	0	0	24	0	CCT7	UTR5	NA
GBM_A_T1--4	chr2:73461447	C	NA	19	0	19	37.053	4.089	0	0	0	18	0	CCT7	UTR5	NA
GBM_A_T1--5	chr2:73461447	C	A	17	0.176	14	34.643	5.956	3	37.667	2.517	12	3	CCT7	UTR5	NA
GBM_A_T1--6	chr2:73461447	C	A	26	0.038	25	35.760	4.755	1	40.000	0.000	23	1	CCT7	UTR5	NA
GBM_A_T1--7	chr2:73461447	C	NA	24	0	24	35.000	4.394	0	0	0	21	0	CCT7	UTR5	NA
GBM_A_T1--8	chr2:73461447	C	NA	26	0	26	36.192	3.522	0	0	0	25	0	CCT7	UTR5	NA
GBM_A_T1--GL	chr2:73461447	C	NA	55	0	55	35.345	4.452	0	0	0	52	0	CCT7	UTR5	NA
GBM_A_T1--1	chr2:95953244	C	NA	17	0	17	37.059	4.322	0	0	0	16	0	PROM2	intronic	NA
GBM_A_T1--2	chr2:95953244	C	A	13	0.231	10	36.500	2.838	3	34.667	4.163	10	3	PROM2	intronic	NA
GBM_A_T1--3	chr2:95953244	C	NA	27	0	27	35.407	6.393	0	0	0	25	0	PROM2	intronic	NA
GBM_A_T1--4	chr2:95953244	C	NA	10	0	10	36.100	2.685	0	0	0	10	0	PROM2	intronic	NA
GBM_A_T1--5	chr2:95953244	C	NA	12	0	12	36.000	3.411	0	0	0	11	0	PROM2	intronic	NA
GBM_A_T1--6	chr2:95953244	C	NA	17	0	17	34.588	8.804	0	0	0	13	0	PROM2	intronic	NA
GBM_A_T1--7	chr2:95953244	C	NA	18	0	18	32.778	6.283	0	0	0	14	0	PROM2	intronic	NA
GBM_A_T1--8	chr2:95953244	C	NA	20	0	20	33.800	7.730	0	0	0	17	0	PROM2	intronic	NA
GBM_A_T1--GL	chr2:95953244	C	NA	47	0	47	34.064	7.115	0	0	0	39	0	PROM2	intronic	NA
GBM_A_T1--1	chr3:12785509	C	NA	25	0	25	36.880	3.004	0	0	0	25	0	TMEM40	intronic	NA
GBM_A_T1--2	chr3:12785509	C	A	10	0.400	6	37.667	2.805	4	34.750	5.795	6	3	TMEM40	intronic	NA
GBM_A_T1--3	chr3:12785509	C	NA	25	0	25	36.400	3.266	0	0	0	24	0	TMEM40	intronic	NA
GBM_A_T1--4	chr3:12785509	C	NA	21	0	21	36.905	3.375	0	0	0	21	0	TMEM40	intronic	NA
GBM_A_T1--5	chr3:12785509	C	NA	17	0	17	35.588	3.203	0	0	0	16	0	TMEM40	intronic	NA
GBM_A_T1--6	chr3:12785509	C	NA	30	0	30	35.200	4.701	0	0	0	28	0	TMEM40	intronic	NA
GBM_A_T1--7	chr3:12785509	C	NA	36	0	36	34.889	4.973	0	0	0	33	0	TMEM40	intronic	NA
GBM_A_T1--8	chr3:12785509	C	NA	21	0	21	34.524	6.577	0	0	0	18	0	TMEM40	intronic	NA
GBM_A_T1--GL	chr3:12785509	C	NA	59	0	59	34.288	5.123	0	0	0	50	0	TMEM40	intronic	NA
GBM_A_T1--1	chr3:128613993	T	C	20	0.050	19	36.737	2.621	1	37.000	0.000	19	1	ACAD9	intronic	NA
GBM_A_T1--2	chr3:128613993	T	C	14	0.071	13	36.923	2.957	1	37.000	0.000	12	1	ACAD9	intronic	NA
GBM_A_T1--3	chr3:128613993	T	C	17	0.059	16	38.062	2.932	1	37.000	0.000	16	1	ACAD9	intronic	NA
GBM_A_T1--4	chr3:128613993	T	NA	16	0	16	36.938	4.008	0	0	0	14	0	ACAD9	intronic	NA
GBM_A_T1--5	chr3:128613993	T	C	11	0.273	8	38.500	2.619	3	37.000	0.000	8	3	ACAD9	intronic	NA
GBM_A_T1--6	chr3:128613993	T	C	14	0.071	13	35.923	2.753	1	37.000	0.000	13	1	ACAD9	intronic	NA
GBM_A_T1--7	chr3:128613993	T	C	23	0.043	22	35.955	2.836	1	37.000	0.000	22	1	ACAD9	intronic	NA
GBM_A_T1--8	chr3:128613993	T	NA	15	0	15	37.933	3.882	0	0	0	14	0	ACAD9	intronic	NA
GBM_A_T1--GL	chr3:128613993	T	NA	39	0	39	36.128	5.639	0	0	0	37	0	ACAD9	intronic	NA
GBM_A_T1--1	chr3:128613995	C	T	20	0.050	19	37.316	2.626	1	37.000	0.000	19	1	ACAD9	intronic	NA
GBM_A_T1--2	chr3:128613995	C	T	14	0.071	13	37.846	2.340	1	37.000	0.000	13	1	ACAD9	intronic	NA
GBM_A_T1--3	chr3:128613995	C	T	17	0.059	16	37.375	5.045	1	36.000	0.000	14	1	ACAD9	intronic	NA
GBM_A_T1--4	chr3:128613995	C	NA	16	0	16	37.875	2.277	0	0	0	16	0	ACAD9	intronic	NA
GBM_A_T1--5	chr3:128613995	C	T	11	0.273	8	37.750	4.400	3	37.000	0.000	7	3	ACAD9	intronic	NA
GBM_A_T1--6	chr3:128613995	C	T	13	0.077	12	35.917	4.144	1	37.000	0.000	11	1	ACAD9	intronic	NA
GBM_A_T1--7	chr3:128613995	C	T	23	0.043	22	35.864	4.178	1	37.000	0.000	20	1	ACAD9	intronic	NA
GBM_A_T1--8	chr3:128613995	C	NA	15	0	15	37.867	4.224	0	0	0	14	0	ACAD9	intronic	NA
GBM_A_T1--GL	chr3:128613995	C	NA	39	0	38	37.316	2.732	0	0	0	38	0	ACAD9	intronic	NA
GBM_A_T1--1	chr3:145798310	T	C	49	0.163	29	35.310	4.019	8	34.125	3.357	26	7	PLOD2	intronic	NA
GBM_A_T1--2	chr3:145798310	T	C	20	0.050	16	37.125	1.784	1	33.000	0.000	16	1	PLOD2	intronic	NA
GBM_A_T1--3	chr3:145798310	T	NA	47	0	31	37.387	2.860	0	0	0	31	0	PLOD2	intronic	NA
GBM_A_T1--4	chr3:145798310	T	C	56	0.018	35	36.914	2.513	1	41.000	0.000	35	1	PLOD2	intronic	NA
GBM_A_T1--5	chr3:145798310	T	C	41	0.122	25	35.240	6.566	5	33.800	2.588	23	5	PLOD2	intronic	NA
GBM_A_T1--6	chr3:145798310	T	C	79	0.013	43	36.163	3.638	1	35.000	0.000	40	1	PLOD2	intronic	NA
GBM_A_T1--7	chr3:145798310	T	NA	51	0	29	36.310	2.867	0	0	0	29	0	PLOD2	intronic	NA
GBM_A_T1--8	chr3:145798310	T	NA	87	0	47	34.617	6.049	0	0	0	42	0	PLOD2	intronic	NA
GBM_A_T1--GL	chr3:145798310	T	NA	86	0	46	35.391	5.397	0	0	0	41	0	PLOD2	intronic	NA
GBM_A_T1--1	chr3:178936091	G	NA	78	0	78	37.474	3.577	0	0	0	76	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr3:178936091	G	NA	36	0	35	37.714	3.111	0	0	0	35	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr3:178936091	G	NA	64	0	64	36.984	5.736	0	0	0	62	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr3:178936091	G	NA	77	0	77	37.455	3.033	0	0	0	75	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr3:178936091	G	NA	54	0	54	37.778	3.468	0	0	0	53	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr3:178936091	G	A	108	0.019	106	36.821	3.524	2	27.000	12.728	103	1	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr3:178936091	G	A	81	0.235	62	37.581	3.206	19	36.947	3.118	62	19	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr3:178936091	G	A	105	0.019	103	35.835	5.097	2	37.500	4.950	95	2	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr3:178936091	G	NA	106	0	106	36.783	4.028	0	0	0	101	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr3:184103827	T	NA	20	0	19	37.737	3.016	0	0	0	19	0	CHRD	intronic	NA
GBM_A_T1--2	chr3:184103827	T	A	17	0.176	14	37.357	2.678	3	39.000	3.464	14	3	CHRD	intronic	NA
GBM_A_T1--3	chr3:184103827	T	NA	28	0	28	36.750	2.914	0	0	0	28	0	CHRD	intronic	NA
GBM_A_T1--4	chr3:184103827	T	NA	19	0	19	36.368	2.241	0	0	0	19	0	CHRD	intronic	NA
GBM_A_T1--5	chr3:184103827	T	NA	22	0	22	37.773	5.051	0	0	0	21	0	CHRD	intronic	NA
GBM_A_T1--6	chr3:184103827	T	NA	25	0	25	37.120	2.635	0	0	0	25	0	CHRD	intronic	NA
GBM_A_T1--7	chr3:184103827	T	NA	18	0	18	37.833	3.585	0	0	0	17	0	CHRD	intronic	NA
GBM_A_T1--8	chr3:184103827	T	NA	38	0	38	36.211	4.192	0	0	0	35	0	CHRD	intronic	NA
GBM_A_T1--GL	chr3:184103827	T	NA	56	0	56	37.196	3.956	0	0	0	55	0	CHRD	intronic	NA
GBM_A_T1--1	chr3:195518309	C	A	27	0.148	23	38.826	3.881	4	39.750	2.500	22	4	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr3:195518309	C	NA	25	0	25	38.840	2.173	0	0	0	25	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr3:195518309	C	A	47	0.043	45	38.844	3.074	2	36.500	2.121	45	2	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr3:195518309	C	NA	31	0	31	37.968	2.799	0	0	0	31	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr3:195518309	C	NA	31	0	31	36.290	5.617	0	0	0	27	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr3:195518309	C	NA	53	0	53	36.887	3.921	0	0	0	51	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr3:195518309	C	NA	47	0	47	36.191	5.640	0	0	0	44	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr3:195518309	C	NA	51	0	51	35.863	4.972	0	0	0	45	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr3:195518309	C	NA	90	0	90	36.467	6.337	0	0	0	81	0	MUC4	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr3:42019260	G	NA	82	0	81	36.568	3.549	0	0	0	77	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--2	chr3:42019260	G	C	31	0.161	26	36.654	4.354	5	36.200	8.106	25	4	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--3	chr3:42019260	G	NA	59	0	59	37.169	2.949	0	0	0	59	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--4	chr3:42019260	G	NA	57	0	57	36.719	3.421	0	0	0	54	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--5	chr3:42019260	G	NA	53	0	53	37.038	3.345	0	0	0	51	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--6	chr3:42019260	G	NA	107	0	106	35.264	5.699	0	0	0	95	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--7	chr3:42019260	G	NA	104	0	103	35.748	5.595	0	0	0	96	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--8	chr3:42019260	G	NA	101	0	101	35.673	5.119	0	0	0	94	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--GL	chr3:42019260	G	NA	149	0	148	35.372	4.862	0	0	0	135	0	ULK4(dist=15600),TRAK1(dist=113486)	intergenic	NA
GBM_A_T1--1	chr3:46716075	C	NA	28	0	28	36.214	3.119	0	0	0	27	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--2	chr3:46716075	C	NA	13	0	13	36.769	2.920	0	0	0	13	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--3	chr3:46716075	C	A	22	0.182	18	35.889	3.724	4	37.250	2.872	17	4	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--4	chr3:46716075	C	NA	18	0	18	36.611	3.109	0	0	0	17	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--5	chr3:46716075	C	NA	21	0	21	34.333	6.792	0	0	0	20	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--6	chr3:46716075	C	NA	44	0	44	35.000	4.477	0	0	0	42	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--7	chr3:46716075	C	NA	21	0	21	33.429	6.779	0	0	0	15	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--8	chr3:46716075	C	NA	23	0	23	33.000	7.422	0	0	0	20	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--GL	chr3:46716075	C	NA	63	0	63	35.587	2.922	0	0	0	61	0	ALS2CL	exonic	stopgain_SNV
GBM_A_T1--1	chr3:46943426	C	A	23	0.174	19	36.316	3.318	4	32.750	6.850	18	3	PTH1R	intronic	NA
GBM_A_T1--2	chr3:46943426	C	NA	22	0	22	37.773	3.987	0	0	0	21	0	PTH1R	intronic	NA
GBM_A_T1--3	chr3:46943426	C	NA	34	0	34	37.706	2.680	0	0	0	34	0	PTH1R	intronic	NA
GBM_A_T1--4	chr3:46943426	C	NA	32	0	31	36.258	2.989	0	0	0	30	0	PTH1R	intronic	NA
GBM_A_T1--5	chr3:46943426	C	NA	41	0	41	37.317	2.823	0	0	0	41	0	PTH1R	intronic	NA
GBM_A_T1--6	chr3:46943426	C	A	34	0.029	33	35.394	5.836	1	39.000	0.000	30	1	PTH1R	intronic	NA
GBM_A_T1--7	chr3:46943426	C	NA	46	0	46	36.261	3.343	0	0	0	45	0	PTH1R	intronic	NA
GBM_A_T1--8	chr3:46943426	C	NA	23	0	23	32.957	7.308	0	0	0	18	0	PTH1R	intronic	NA
GBM_A_T1--GL	chr3:46943426	C	NA	76	0	76	36.671	3.087	0	0	0	75	0	PTH1R	intronic	NA
GBM_A_T1--1	chr3:49898818	C	NA	19	0	19	38.105	2.826	0	0	0	19	0	CAMKV	intronic	NA
GBM_A_T1--2	chr3:49898818	C	NA	12	0	12	36.583	2.644	0	0	0	12	0	CAMKV	intronic	NA
GBM_A_T1--3	chr3:49898818	C	NA	25	0	25	37.880	3.480	0	0	0	25	0	CAMKV	intronic	NA
GBM_A_T1--4	chr3:49898818	C	NA	16	0	16	37.125	4.334	0	0	0	15	0	CAMKV	intronic	NA
GBM_A_T1--5	chr3:49898818	C	A	13	0.231	10	36.600	3.718	3	38.000	3.606	10	3	CAMKV	intronic	NA
GBM_A_T1--6	chr3:49898818	C	A	21	0.048	20	37.300	2.849	1	37.000	0.000	20	1	CAMKV	intronic	NA
GBM_A_T1--7	chr3:49898818	C	NA	26	0	26	35.808	4.128	0	0	0	25	0	CAMKV	intronic	NA
GBM_A_T1--8	chr3:49898818	C	NA	22	0	22	33.318	8.426	0	0	0	18	0	CAMKV	intronic	NA
GBM_A_T1--GL	chr3:49898818	C	NA	65	0	64	35.938	5.237	0	0	0	59	0	CAMKV	intronic	NA
GBM_A_T1--1	chr3:51459743	C	A	13	0.231	10	38.200	2.044	3	39.000	3.464	10	3	VPRBP	intronic	NA
GBM_A_T1--2	chr3:51459743	C	NA	10	0	10	32.800	7.330	0	0	0	7	0	VPRBP	intronic	NA
GBM_A_T1--3	chr3:51459743	C	A	17	0.059	16	36.000	4.442	1	41.000	0.000	15	1	VPRBP	intronic	NA
GBM_A_T1--4	chr3:51459743	C	NA	12	0	12	37.500	4.681	0	0	0	11	0	VPRBP	intronic	NA
GBM_A_T1--5	chr3:51459743	C	NA	15	0	15	38.933	3.035	0	0	0	15	0	VPRBP	intronic	NA
GBM_A_T1--6	chr3:51459743	C	NA	20	0	20	37.800	3.222	0	0	0	19	0	VPRBP	intronic	NA
GBM_A_T1--7	chr3:51459743	C	NA	16	0	16	34.750	4.669	0	0	0	14	0	VPRBP	intronic	NA
GBM_A_T1--8	chr3:51459743	C	NA	23	0	23	36.435	4.419	0	0	0	20	0	VPRBP	intronic	NA
GBM_A_T1--GL	chr3:51459743	C	NA	33	0	33	36.667	4.291	0	0	0	31	0	VPRBP	intronic	NA
GBM_A_T1--1	chr3:52384516	C	A	59	0.017	58	37.328	2.825	1	33.000	0.000	58	1	DNAH1	intronic	NA
GBM_A_T1--2	chr3:52384516	C	NA	25	0	25	37.000	2.646	0	0	0	25	0	DNAH1	intronic	NA
GBM_A_T1--3	chr3:52384516	C	A	48	0.042	46	37.500	3.501	2	34.500	0.707	45	2	DNAH1	intronic	NA
GBM_A_T1--4	chr3:52384516	C	NA	24	0	24	37.292	2.510	0	0	0	24	0	DNAH1	intronic	NA
GBM_A_T1--5	chr3:52384516	C	A	27	0.185	22	36.545	3.635	5	35.800	0.837	21	5	DNAH1	intronic	NA
GBM_A_T1--6	chr3:52384516	C	A	60	0.017	59	36.169	4.966	1	35.000	0.000	56	1	DNAH1	intronic	NA
GBM_A_T1--7	chr3:52384516	C	NA	51	0	51	37.118	2.964	0	0	0	51	0	DNAH1	intronic	NA
GBM_A_T1--8	chr3:52384516	C	A	54	0.019	53	36.189	3.574	1	31.000	0.000	52	1	DNAH1	intronic	NA
GBM_A_T1--GL	chr3:52384516	C	NA	98	0	96	35.938	4.556	0	0	0	89	0	DNAH1	intronic	NA
GBM_A_T1--1	chr3:56835937	C	NA	89	0	89	35.528	4.240	0	0	0	82	0	ARHGEF3	UTR5	NA
GBM_A_T1--2	chr3:56835937	C	A	15	0.200	12	35.667	4.053	3	37.333	3.215	11	3	ARHGEF3	UTR5	NA
GBM_A_T1--3	chr3:56835937	C	NA	73	0	73	35.342	4.485	0	0	0	65	0	ARHGEF3	UTR5	NA
GBM_A_T1--4	chr3:56835937	C	NA	90	0	90	33.756	5.937	0	0	0	77	0	ARHGEF3	UTR5	NA
GBM_A_T1--5	chr3:56835937	C	NA	47	0	47	35.894	4.598	0	0	0	42	0	ARHGEF3	UTR5	NA
GBM_A_T1--6	chr3:56835937	C	NA	101	0	101	34.307	5.295	0	0	0	85	0	ARHGEF3	UTR5	NA
GBM_A_T1--7	chr3:56835937	C	A	84	0.024	82	34.341	5.578	2	39.500	2.121	73	2	ARHGEF3	UTR5	NA
GBM_A_T1--8	chr3:56835937	C	NA	92	0	91	34.264	5.715	0	0	0	77	0	ARHGEF3	UTR5	NA
GBM_A_T1--GL	chr3:56835937	C	NA	141	0	141	34.553	4.879	0	0	0	123	0	ARHGEF3	UTR5	NA
GBM_A_T1--1	chr3:58389675	A	NA	29	0	29	36.241	2.811	0	0	0	28	0	PXK	intronic	NA
GBM_A_T1--2	chr3:58389675	A	G	12	0.250	9	37.333	2.958	3	33.333	5.686	9	2	PXK	intronic	NA
GBM_A_T1--3	chr3:58389675	A	NA	27	0	27	36.333	3.700	0	0	0	25	0	PXK	intronic	NA
GBM_A_T1--4	chr3:58389675	A	NA	32	0	32	35.656	3.764	0	0	0	30	0	PXK	intronic	NA
GBM_A_T1--5	chr3:58389675	A	NA	21	0	21	34.571	8.262	0	0	0	19	0	PXK	intronic	NA
GBM_A_T1--6	chr3:58389675	A	NA	56	0	56	35.071	3.324	0	0	0	51	0	PXK	intronic	NA
GBM_A_T1--7	chr3:58389675	A	NA	48	0	48	36.208	3.115	0	0	0	46	0	PXK	intronic	NA
GBM_A_T1--8	chr3:58389675	A	NA	35	0	35	34.629	5.536	0	0	0	31	0	PXK	intronic	NA
GBM_A_T1--GL	chr3:58389675	A	NA	39	0	39	34.667	4.636	0	0	0	34	0	PXK	intronic	NA
GBM_A_T1--1	chr4:114434563	C	NA	67	0	67	37.567	3.775	0	0	0	66	0	CAMK2D	intronic	NA
GBM_A_T1--2	chr4:114434563	C	A	28	0.143	24	37.500	3.270	4	38.000	3.464	24	4	CAMK2D	intronic	NA
GBM_A_T1--3	chr4:114434563	C	A	51	0.020	50	37.420	3.399	1	40.000	0.000	49	1	CAMK2D	intronic	NA
GBM_A_T1--4	chr4:114434563	C	NA	72	0	72	36.903	4.774	0	0	0	69	0	CAMK2D	intronic	NA
GBM_A_T1--5	chr4:114434563	C	NA	45	0	45	37.111	3.345	0	0	0	45	0	CAMK2D	intronic	NA
GBM_A_T1--6	chr4:114434563	C	NA	82	0	82	35.110	4.947	0	0	0	75	0	CAMK2D	intronic	NA
GBM_A_T1--7	chr4:114434563	C	NA	59	0	59	35.288	4.631	0	0	0	55	0	CAMK2D	intronic	NA
GBM_A_T1--8	chr4:114434563	C	NA	88	0	87	35.770	5.173	0	0	0	85	0	CAMK2D	intronic	NA
GBM_A_T1--GL	chr4:114434563	C	NA	63	0	63	36.556	3.383	0	0	0	62	0	CAMK2D	intronic	NA
GBM_A_T1--1	chr4:122851985	T	A	62	0.242	47	38.532	3.574	15	34.067	1.280	45	15	TRPC3	intronic	NA
GBM_A_T1--2	chr4:122851985	T	NA	33	0	32	37.594	6.820	0	0	0	29	0	TRPC3	intronic	NA
GBM_A_T1--3	chr4:122851985	T	A	50	0.160	42	37.262	5.789	8	33.500	2.070	38	7	TRPC3	intronic	NA
GBM_A_T1--4	chr4:122851985	T	A	58	0.017	57	39.316	2.316	1	31.000	0.000	56	1	TRPC3	intronic	NA
GBM_A_T1--5	chr4:122851985	T	NA	38	0	37	38.189	4.660	0	0	0	36	0	TRPC3	intronic	NA
GBM_A_T1--6	chr4:122851985	T	A	76	0.079	70	37.471	4.266	6	32.667	1.506	65	6	TRPC3	intronic	NA
GBM_A_T1--7	chr4:122851985	T	A	76	0.105	68	37.324	6.190	8	34.250	1.035	64	8	TRPC3	intronic	NA
GBM_A_T1--8	chr4:122851985	T	A	52	0.019	51	35.706	6.810	1	33.000	0.000	43	1	TRPC3	intronic	NA
GBM_A_T1--GL	chr4:122851985	T	NA	37	0	37	38.568	2.456	0	0	0	37	0	TRPC3	intronic	NA
GBM_A_T1--1	chr4:141847131	C	NA	25	0	25	37.600	4.103	0	0	0	24	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--2	chr4:141847131	C	A	17	0.176	14	39.071	2.056	3	39.333	2.887	14	3	RNF150	exonic	synonymous_SNV
GBM_A_T1--3	chr4:141847131	C	NA	34	0	34	37.412	4.135	0	0	0	33	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--4	chr4:141847131	C	NA	26	0	26	35.615	6.812	0	0	0	23	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--5	chr4:141847131	C	NA	30	0	30	36.200	4.429	0	0	0	27	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--6	chr4:141847131	C	NA	36	0	36	36.611	4.643	0	0	0	34	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--7	chr4:141847131	C	NA	43	0	43	37.395	4.972	0	0	0	40	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--8	chr4:141847131	C	NA	47	0	47	36.426	4.858	0	0	0	43	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--GL	chr4:141847131	C	NA	48	0	48	37.729	3.350	0	0	0	47	0	RNF150	exonic	synonymous_SNV
GBM_A_T1--1	chr4:191039641	T	G	22	0.182	18	39.111	2.220	4	38.500	2.380	18	4	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:191039641	T	G	11	0.091	10	38.600	2.366	1	41.000	0.000	10	1	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:191039641	T	NA	20	0	20	38.750	2.074	0	0	0	20	0	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:191039641	T	G	14	0.214	11	37.273	5.442	3	36.667	3.786	10	3	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:191039641	T	G	18	0.056	17	39.294	2.418	1	37.000	0.000	17	1	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:191039641	T	G	16	0.062	15	38.400	2.165	1	39.000	0.000	15	1	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:191039641	T	G	11	0.182	9	37.889	3.444	2	37.500	2.121	9	2	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:191039641	T	G	33	0.061	31	38.419	2.680	2	35.000	0.000	30	2	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:191039641	T	NA	34	0	34	38.353	2.423	0	0	0	34	0	DUX4(dist=26199),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:49108466	C	NA	14	0	14	38.429	2.311	0	0	0	14	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:49108466	C	NA	21	0	21	37.714	3.783	0	0	0	20	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:49108466	C	T	15	0.133	12	36.667	4.677	2	37.500	2.121	11	2	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:49108466	C	NA	19	0	17	36.941	5.900	0	0	0	16	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:49108466	C	T	27	0.222	19	36.263	7.317	6	38.333	1.862	17	6	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:49108466	C	T	24	0.125	20	35.500	4.904	3	36.667	7.506	18	2	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:49108466	C	NA	23	0	22	35.273	6.840	0	0	0	20	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:49108466	C	NA	19	0	19	36.842	3.270	0	0	0	18	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:49108466	C	NA	78	0	76	36.658	5.405	0	0	0	68	0	CWH43(dist=44371),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:49114257	C	NA	27	0	27	37.852	3.461	0	0	0	26	0	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:49114257	C	NA	10	0	10	36.600	6.022	0	0	0	9	0	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:49114257	C	T	19	0.053	18	38.778	2.102	1	35.000	0.000	18	1	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:49114257	C	T	18	0.222	14	38.571	2.563	4	36.000	4.163	14	4	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:49114257	C	NA	16	0	16	38.625	2.156	0	0	0	16	0	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:49114257	C	T	16	0.125	13	36.923	3.570	2	41.000	0.000	13	2	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:49114257	C	T	21	0.095	19	36.789	4.565	2	40.000	1.414	17	2	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:49114257	C	T	16	0.062	15	38.533	2.386	1	41.000	0.000	15	1	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:49114257	C	NA	38	0	38	36.526	3.971	0	0	0	35	0	CWH43(dist=50162),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:49115351	C	NA	14	0	14	39.071	2.586	0	0	0	14	0	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:49115351	C	NA	10	0	10	35.600	9.107	0	0	0	9	0	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:49115351	C	G	17	0.235	13	36.538	5.825	4	34.250	6.500	11	3	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:49115351	C	NA	13	0	13	36.923	6.278	0	0	0	12	0	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:49115351	C	G	10	0.300	7	38.143	3.625	3	37.667	5.774	7	3	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:49115351	C	G	16	0.125	14	34.143	8.831	2	39.500	0.707	11	2	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:49115351	C	G	26	0.154	22	38.636	2.279	4	34.750	7.365	22	3	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:49115351	C	G	14	0.071	13	38.077	3.378	1	32.000	0.000	13	1	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:49115351	C	NA	42	0	42	37.595	3.569	0	0	0	40	0	CWH43(dist=51256),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:49515034	C	NA	21	0	21	37.190	3.502	0	0	0	20	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:49515034	C	G	15	0.200	12	37.167	3.271	3	40.667	0.577	12	3	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:49515034	C	G	31	0.032	30	37.767	2.775	1	35.000	0.000	30	1	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:49515034	C	NA	18	0	17	38.882	1.996	0	0	0	17	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:49515034	C	NA	19	0	19	36.632	3.320	0	0	0	18	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:49515034	C	NA	26	0	26	35.962	4.494	0	0	0	23	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:49515034	C	NA	36	0	36	35.889	5.445	0	0	0	31	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:49515034	C	G	34	0.118	30	34.800	4.627	4	37.500	2.887	26	4	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:49515034	C	NA	69	0	69	36.203	3.118	0	0	0	67	0	CWH43(dist=450939),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:49515057	A	NA	22	0	22	36.864	3.590	0	0	0	21	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chr4:49515057	A	T	15	0.200	12	38.917	1.929	3	40.667	0.577	12	3	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chr4:49515057	A	NA	37	0	37	36.703	4.034	0	0	0	36	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chr4:49515057	A	NA	18	0	18	37.667	5.391	0	0	0	17	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chr4:49515057	A	NA	19	0	19	37.263	4.107	0	0	0	18	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chr4:49515057	A	NA	20	0	20	38.250	2.337	0	0	0	20	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chr4:49515057	A	NA	30	0	29	36.828	4.327	0	0	0	26	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chr4:49515057	A	T	27	0.074	25	35.320	4.580	2	36.000	7.071	23	2	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chr4:49515057	A	NA	67	0	67	35.955	4.266	0	0	0	61	0	CWH43(dist=450962),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--1	chr4:70274792	T	NA	55	0	55	36.764	4.194	0	0	0	52	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--2	chr4:70274792	T	NA	26	0	26	35.115	6.231	0	0	0	25	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--3	chr4:70274792	T	A	45	0.133	39	37.103	3.655	6	37.000	2.366	37	6	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--4	chr4:70274792	T	NA	45	0	45	38.244	3.046	0	0	0	44	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--5	chr4:70274792	T	NA	28	0	28	35.679	5.368	0	0	0	25	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--6	chr4:70274792	T	NA	60	0	60	35.367	6.543	0	0	0	54	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--7	chr4:70274792	T	NA	70	0	70	36.043	3.797	0	0	0	66	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--8	chr4:70274792	T	NA	82	0	82	36.122	5.227	0	0	0	77	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--GL	chr4:70274792	T	NA	123	0	123	34.724	6.051	0	0	0	109	0	UGT2B28(dist=114024),UGT2B4(dist=71091)	intergenic	NA
GBM_A_T1--1	chr4:77134736	C	A	25	0.160	21	34.905	3.330	4	36.250	3.202	20	4	SCARB2	UTR5	NA
GBM_A_T1--2	chr4:77134736	C	NA	12	0	12	35.750	3.793	0	0	0	10	0	SCARB2	UTR5	NA
GBM_A_T1--3	chr4:77134736	C	NA	25	0	25	35.800	4.173	0	0	0	22	0	SCARB2	UTR5	NA
GBM_A_T1--4	chr4:77134736	C	NA	23	0	23	35.000	5.800	0	0	0	21	0	SCARB2	UTR5	NA
GBM_A_T1--5	chr4:77134736	C	NA	15	0	15	36.533	4.438	0	0	0	13	0	SCARB2	UTR5	NA
GBM_A_T1--6	chr4:77134736	C	NA	35	0	35	35.286	4.528	0	0	0	31	0	SCARB2	UTR5	NA
GBM_A_T1--7	chr4:77134736	C	NA	16	0	16	35.875	5.760	0	0	0	15	0	SCARB2	UTR5	NA
GBM_A_T1--8	chr4:77134736	C	NA	20	0	20	33.900	4.564	0	0	0	16	0	SCARB2	UTR5	NA
GBM_A_T1--GL	chr4:77134736	C	NA	42	0	42	35.167	4.808	0	0	0	37	0	SCARB2	UTR5	NA
GBM_A_T1--1	chr4:79781185	C	T	45	0.156	38	30.895	10.919	7	26.000	14.083	27	5	BMP2K	intronic	NA
GBM_A_T1--2	chr4:79781185	C	NA	23	0	20	31.350	10.985	0	0	0	13	0	BMP2K	intronic	NA
GBM_A_T1--3	chr4:79781185	C	T	40	0.125	35	32.743	10.670	5	25.000	13.982	26	3	BMP2K	intronic	NA
GBM_A_T1--4	chr4:79781185	C	T	33	0.212	25	35.080	7.621	7	29.143	5.490	18	3	BMP2K	intronic	NA
GBM_A_T1--5	chr4:79781185	C	T	25	0.080	23	31.609	11.634	2	27.000	8.485	17	1	BMP2K	intronic	NA
GBM_A_T1--6	chr4:79781185	C	T	34	0.118	30	33.867	8.110	4	29.250	10.210	23	3	BMP2K	intronic	NA
GBM_A_T1--7	chr4:79781185	C	NA	36	0	35	30.714	11.786	0	0	0	25	0	BMP2K	intronic	NA
GBM_A_T1--8	chr4:79781185	C	T	55	0.145	47	33.936	7.432	8	24.625	13.907	36	5	BMP2K	intronic	NA
GBM_A_T1--GL	chr4:79781185	C	NA	38	0	37	34.054	6.209	0	0	0	27	0	BMP2K	intronic	NA
GBM_A_T1--1	chr4:88536457	T	C	166	0.187	135	37.052	4.144	31	37.258	3.669	131	30	DSPP	exonic	synonymous_SNV
GBM_A_T1--2	chr4:88536457	T	NA	70	0	70	35.900	5.771	0	0	0	62	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--3	chr4:88536457	T	C	152	0.178	125	36.520	5.587	27	36.296	3.811	114	26	DSPP	exonic	synonymous_SNV
GBM_A_T1--4	chr4:88536457	T	C	199	0.166	166	37.506	3.639	33	36.727	3.044	163	32	DSPP	exonic	synonymous_SNV
GBM_A_T1--5	chr4:88536457	T	NA	113	0	112	36.107	5.470	0	0	0	101	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--6	chr4:88536457	T	C	205	0.156	173	36.289	5.052	32	34.250	7.492	159	27	DSPP	exonic	synonymous_SNV
GBM_A_T1--7	chr4:88536457	T	NA	202	0	202	35.847	4.852	0	0	0	180	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--8	chr4:88536457	T	C	235	0.009	233	36.129	4.635	2	31.500	6.364	212	1	DSPP	exonic	synonymous_SNV
GBM_A_T1--GL	chr4:88536457	T	NA	394	0	394	35.662	5.765	0	0	0	357	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--1	chr4:88536460	C	T	166	0.193	134	37.060	5.704	32	33.688	4.403	124	27	DSPP	exonic	synonymous_SNV
GBM_A_T1--2	chr4:88536460	C	NA	58	0	57	37.474	4.192	0	0	0	55	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--3	chr4:88536460	C	T	146	0.164	122	37.189	5.057	24	32.208	6.594	114	18	DSPP	exonic	synonymous_SNV
GBM_A_T1--4	chr4:88536460	C	T	195	0.195	157	37.739	4.895	38	32.816	5.963	149	31	DSPP	exonic	synonymous_SNV
GBM_A_T1--5	chr4:88536460	C	NA	103	0	103	36.981	5.221	0	0	0	97	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--6	chr4:88536460	C	T	206	0.204	164	36.482	5.601	42	30.333	8.938	154	29	DSPP	exonic	synonymous_SNV
GBM_A_T1--7	chr4:88536460	C	NA	179	0	178	36.124	5.275	0	0	0	164	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--8	chr4:88536460	C	NA	208	0	207	36.222	5.383	0	0	0	194	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--GL	chr4:88536460	C	NA	348	0	347	36.651	5.124	0	0	0	324	0	DSPP	exonic	synonymous_SNV
GBM_A_T1--1	chr4:9249898	G	NA	28	0	24	30.750	8.664	0	0	0	19	0	USP17L11,USP17L18	upstream	NA
GBM_A_T1--2	chr4:9249898	G	NA	15	0	14	31.214	8.946	0	0	0	11	0	USP17L11,USP17L18	upstream	NA
GBM_A_T1--3	chr4:9249898	G	NA	22	0	22	33.409	6.441	0	0	0	17	0	USP17L11,USP17L18	upstream	NA
GBM_A_T1--4	chr4:9249898	G	NA	18	0	18	34.167	4.449	0	0	0	16	0	USP17L11,USP17L18	upstream	NA
GBM_A_T1--5	chr4:9249898	G	A	32	0.062	30	33.633	6.515	2	27.000	16.971	26	1	USP17L11,USP17L18	upstream	NA
GBM_A_T1--6	chr4:9249898	G	A	21	0.190	17	31.882	6.323	4	37.750	1.500	13	4	USP17L11,USP17L18	upstream	NA
GBM_A_T1--7	chr4:9249898	G	A	20	0.100	17	33.176	6.167	2	21.500	13.435	13	1	USP17L11,USP17L18	upstream	NA
GBM_A_T1--8	chr4:9249898	G	A	15	0.133	13	30.462	5.317	2	40.000	1.414	8	2	USP17L11,USP17L18	upstream	NA
GBM_A_T1--GL	chr4:9249898	G	NA	50	0	50	29.520	7.960	0	0	0	33	0	USP17L11,USP17L18	upstream	NA
GBM_A_T1--1	chr4:99943990	G	NA	15	0	15	35.800	2.704	0	0	0	15	0	METAP1	intronic	NA
GBM_A_T1--2	chr4:99943990	G	NA	10	0	10	35.200	2.348	0	0	0	10	0	METAP1	intronic	NA
GBM_A_T1--3	chr4:99943990	G	NA	11	0	11	35.091	3.885	0	0	0	10	0	METAP1	intronic	NA
GBM_A_T1--4	chr4:99943990	G	NA	13	0	13	35.231	3.244	0	0	0	13	0	METAP1	intronic	NA
GBM_A_T1--5	chr4:99943990	G	T	13	0.231	10	35.700	3.368	3	34.333	6.028	10	2	METAP1	intronic	NA
GBM_A_T1--6	chr4:99943990	G	NA	18	0	18	32.722	7.537	0	0	0	14	0	METAP1	intronic	NA
GBM_A_T1--7	chr4:99943990	G	NA	16	0	16	35.688	3.092	0	0	0	15	0	METAP1	intronic	NA
GBM_A_T1--8	chr4:99943990	G	NA	14	0	14	32.929	6.462	0	0	0	11	0	METAP1	intronic	NA
GBM_A_T1--GL	chr4:99943990	G	NA	39	0	39	34.718	5.395	0	0	0	34	0	METAP1	intronic	NA
GBM_A_T1--1	chr5:110409214	T	NA	56	0	56	36.768	3.501	0	0	0	54	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:110409214	T	A	15	0.200	12	36.000	3.568	3	34.667	3.055	12	3	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:110409214	T	NA	41	0	41	36.927	3.379	0	0	0	41	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:110409214	T	NA	41	0	41	35.878	4.981	0	0	0	39	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:110409214	T	NA	38	0	38	36.500	3.861	0	0	0	37	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:110409214	T	A	58	0.017	57	35.333	4.584	1	35.000	0.000	54	1	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:110409214	T	NA	53	0	53	35.415	5.726	0	0	0	49	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:110409214	T	NA	51	0	51	35.216	3.657	0	0	0	48	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:110409214	T	NA	52	0	52	34.212	5.771	0	0	0	45	0	TSLP	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:118482959	C	NA	73	0	73	37.479	3.400	0	0	0	70	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:118482959	C	A	16	0.188	13	36.000	6.671	3	38.667	3.215	11	3	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:118482959	C	NA	45	0	45	36.511	7.060	0	0	0	41	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:118482959	C	NA	67	0	67	38.164	2.837	0	0	0	67	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:118482959	C	A	42	0.024	41	37.927	2.696	1	36.000	0.000	40	1	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:118482959	C	NA	100	0	99	37.202	4.600	0	0	0	96	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:118482959	C	NA	82	0	81	37.580	3.724	0	0	0	79	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:118482959	C	A	97	0.010	96	36.542	4.790	1	37.000	0.000	88	1	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:118482959	C	NA	105	0	105	37.638	3.617	0	0	0	102	0	DMXL1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:127686784	A	NA	51	0	51	37.686	2.649	0	0	0	51	0	FBN2	intronic	NA
GBM_A_T1--2	chr5:127686784	A	T	16	0.188	13	36.000	3.416	3	38.667	3.215	13	3	FBN2	intronic	NA
GBM_A_T1--3	chr5:127686784	A	T	50	0.020	49	36.980	3.313	1	35.000	0.000	48	1	FBN2	intronic	NA
GBM_A_T1--4	chr5:127686784	A	NA	51	0	51	36.980	3.535	0	0	0	49	0	FBN2	intronic	NA
GBM_A_T1--5	chr5:127686784	A	NA	37	0	37	36.568	4.038	0	0	0	35	0	FBN2	intronic	NA
GBM_A_T1--6	chr5:127686784	A	NA	71	0	71	36.662	4.369	0	0	0	66	0	FBN2	intronic	NA
GBM_A_T1--7	chr5:127686784	A	T	56	0.018	54	36.370	5.760	1	35.000	0.000	49	1	FBN2	intronic	NA
GBM_A_T1--8	chr5:127686784	A	NA	80	0	80	36.638	4.088	0	0	0	75	0	FBN2	intronic	NA
GBM_A_T1--GL	chr5:127686784	A	NA	97	0	97	36.309	4.638	0	0	0	90	0	FBN2	intronic	NA
GBM_A_T1--1	chr5:135276736	C	NA	16	0	16	39.562	1.896	0	0	0	16	0	FBXL21	exonic	unknown
GBM_A_T1--2	chr5:135276736	C	NA	13	0	13	38.385	3.124	0	0	0	13	0	FBXL21	exonic	unknown
GBM_A_T1--3	chr5:135276736	C	A	16	0.188	12	40.083	0.900	3	41.000	0.000	12	3	FBXL21	exonic	unknown
GBM_A_T1--4	chr5:135276736	C	NA	19	0	19	37.737	3.871	0	0	0	18	0	FBXL21	exonic	unknown
GBM_A_T1--5	chr5:135276736	C	NA	20	0	20	38.400	2.624	0	0	0	20	0	FBXL21	exonic	unknown
GBM_A_T1--6	chr5:135276736	C	NA	33	0	33	36.424	5.466	0	0	0	29	0	FBXL21	exonic	unknown
GBM_A_T1--7	chr5:135276736	C	NA	30	0	30	36.633	6.184	0	0	0	29	0	FBXL21	exonic	unknown
GBM_A_T1--8	chr5:135276736	C	NA	40	0	40	37.900	3.835	0	0	0	39	0	FBXL21	exonic	unknown
GBM_A_T1--GL	chr5:135276736	C	NA	58	0	58	36.638	4.730	0	0	0	52	0	FBXL21	exonic	unknown
GBM_A_T1--1	chr5:137534423	C	A	29	0.138	25	36.120	3.723	4	37.500	2.517	23	4	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:137534423	C	NA	14	0	14	38.857	2.797	0	0	0	14	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:137534423	C	NA	30	0	30	36.500	4.819	0	0	0	28	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:137534423	C	NA	27	0	27	36.741	6.395	0	0	0	25	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:137534423	C	NA	29	0	29	36.931	3.273	0	0	0	29	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:137534423	C	NA	33	0	33	35.152	5.374	0	0	0	28	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:137534423	C	NA	41	0	41	35.537	7.403	0	0	0	38	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:137534423	C	NA	30	0	30	34.467	5.649	0	0	0	28	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:137534423	C	NA	73	0	73	36.096	3.776	0	0	0	67	0	CDC23	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:140711086	T	A	50	0.140	43	37.047	3.192	7	37.571	3.155	41	7	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:140711086	T	NA	37	0	37	35.541	6.085	0	0	0	33	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:140711086	T	NA	61	0	61	34.836	5.660	0	0	0	55	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:140711086	T	NA	61	0	61	36.459	4.221	0	0	0	58	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:140711086	T	NA	46	0	46	34.130	6.442	0	0	0	42	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:140711086	T	A	76	0.197	61	36.082	3.712	15	36.933	3.555	58	15	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:140711086	T	NA	68	0	66	34.500	5.957	0	0	0	60	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:140711086	T	A	63	0.079	58	35.155	5.321	5	34.400	10.479	51	4	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:140711086	T	NA	144	0	144	34.160	5.996	0	0	0	126	0	PCDHGA1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:149931487	A	NA	20	0	20	38.850	3.167	0	0	0	20	0	NDST1	intronic	NA
GBM_A_T1--2	chr5:149931487	A	NA	13	0	13	38.231	3.395	0	0	0	13	0	NDST1	intronic	NA
GBM_A_T1--3	chr5:149931487	A	NA	33	0	32	38.188	3.831	0	0	0	31	0	NDST1	intronic	NA
GBM_A_T1--4	chr5:149931487	A	T	18	0.222	14	35.357	7.313	4	34.250	4.717	11	4	NDST1	intronic	NA
GBM_A_T1--5	chr5:149931487	A	NA	25	0	25	39.200	2.915	0	0	0	25	0	NDST1	intronic	NA
GBM_A_T1--6	chr5:149931487	A	NA	29	0	29	37.966	4.625	0	0	0	26	0	NDST1	intronic	NA
GBM_A_T1--7	chr5:149931487	A	NA	32	0	32	37.469	3.810	0	0	0	31	0	NDST1	intronic	NA
GBM_A_T1--8	chr5:149931487	A	NA	29	0	29	37.069	5.077	0	0	0	26	0	NDST1	intronic	NA
GBM_A_T1--GL	chr5:149931487	A	NA	93	0	92	38.163	3.780	0	0	0	89	0	NDST1	intronic	NA
GBM_A_T1--1	chr5:154287165	C	NA	42	0	42	36.357	4.449	0	0	0	38	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:154287165	C	A	13	0.231	10	38.400	3.307	3	38.667	4.041	10	3	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:154287165	C	NA	52	0	52	37.077	3.525	0	0	0	51	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:154287165	C	NA	42	0	42	36.786	3.310	0	0	0	42	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:154287165	C	NA	33	0	33	37.424	3.289	0	0	0	33	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:154287165	C	NA	73	0	73	35.068	5.427	0	0	0	69	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:154287165	C	NA	62	0	62	36.468	4.810	0	0	0	60	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:154287165	C	NA	69	0	69	36.957	4.192	0	0	0	66	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:154287165	C	NA	124	0	123	36.008	4.504	0	0	0	115	0	GEMIN5	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:169096386	C	T	52	0.154	42	35.619	4.701	8	35.375	2.200	40	8	DOCK2	intronic	NA
GBM_A_T1--2	chr5:169096386	C	T	17	0.118	15	35.200	3.256	2	33.500	4.950	14	2	DOCK2	intronic	NA
GBM_A_T1--3	chr5:169096386	C	T	59	0.119	52	35.231	5.558	7	38.143	3.024	49	7	DOCK2	intronic	NA
GBM_A_T1--4	chr5:169096386	C	T	51	0.078	47	34.915	5.698	4	37.000	2.828	44	4	DOCK2	intronic	NA
GBM_A_T1--5	chr5:169096386	C	T	34	0.147	29	36.103	3.811	5	35.600	1.949	27	5	DOCK2	intronic	NA
GBM_A_T1--6	chr5:169096386	C	T	56	0.321	37	34.514	5.984	18	36.000	3.199	33	17	DOCK2	intronic	NA
GBM_A_T1--7	chr5:169096386	C	T	71	0.408	42	34.905	3.773	29	33.828	4.841	38	25	DOCK2	intronic	NA
GBM_A_T1--8	chr5:169096386	C	T	54	0.278	39	35.410	3.938	15	33.867	4.486	36	14	DOCK2	intronic	NA
GBM_A_T1--GL	chr5:169096386	C	NA	103	0	99	34.343	4.008	0	0	0	89	0	DOCK2	intronic	NA
GBM_A_T1--1	chr5:176315865	C	NA	17	0	17	38.647	2.370	0	0	0	17	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr5:176315865	C	NA	13	0	13	36.154	2.911	0	0	0	13	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr5:176315865	C	NA	20	0	20	33.600	7.803	0	0	0	17	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr5:176315865	C	A	16	0.188	13	36.692	4.270	3	36.000	2.646	12	3	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr5:176315865	C	NA	17	0	17	36.588	2.938	0	0	0	17	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr5:176315865	C	NA	26	0	26	35.231	4.934	0	0	0	24	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr5:176315865	C	NA	20	0	20	37.050	4.501	0	0	0	18	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr5:176315865	C	NA	20	0	20	36.200	7.288	0	0	0	19	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr5:176315865	C	NA	42	0	42	35.929	4.795	0	0	0	39	0	HK3	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr5:179078423	A	G	20	0.100	18	35.889	7.760	2	37.000	0.000	16	2	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--2	chr5:179078423	A	G	13	0.077	12	37.417	2.234	1	37.000	0.000	12	1	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--3	chr5:179078423	A	G	17	0.059	16	37.438	3.669	1	37.000	0.000	16	1	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--4	chr5:179078423	A	G	16	0.062	15	36.933	2.963	1	37.000	0.000	14	1	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--5	chr5:179078423	A	NA	18	0	18	36.944	4.123	0	0	0	17	0	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--6	chr5:179078423	A	NA	14	0	14	36.857	2.685	0	0	0	14	0	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--7	chr5:179078423	A	G	17	0.235	13	33.154	8.425	4	35.250	4.500	11	4	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--8	chr5:179078423	A	NA	18	0	18	38.111	2.541	0	0	0	18	0	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--GL	chr5:179078423	A	NA	45	0	44	35.705	6.098	0	0	0	41	0	C5orf60(dist=6376),CBY3(dist=27136)	intergenic	NA
GBM_A_T1--1	chr5:21479251	C	T	31	0.065	29	35.483	4.331	2	35.000	0.000	27	2	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--2	chr5:21479251	C	T	26	0.192	21	36.476	5.564	5	33.800	1.789	20	5	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--3	chr5:21479251	C	T	22	0.182	18	36.389	4.434	4	32.000	2.582	17	3	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--4	chr5:21479251	C	NA	32	0	31	37.032	3.954	0	0	0	29	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--5	chr5:21479251	C	NA	21	0	21	34.333	6.053	0	0	0	17	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--6	chr5:21479251	C	NA	28	0	28	35.107	4.003	0	0	0	25	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--7	chr5:21479251	C	NA	26	0	26	34.808	5.463	0	0	0	22	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--8	chr5:21479251	C	NA	33	0	33	34.333	5.644	0	0	0	29	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--GL	chr5:21479251	C	NA	54	0	54	34.685	6.596	0	0	0	48	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T1--1	chr5:35875523	C	NA	48	0	48	37.958	3.121	0	0	0	46	0	IL7R	intronic	NA
GBM_A_T1--2	chr5:35875523	C	A	22	0.182	18	38.722	3.286	4	37.750	3.202	17	4	IL7R	intronic	NA
GBM_A_T1--3	chr5:35875523	C	A	32	0.031	31	37.774	3.253	1	40.000	0.000	31	1	IL7R	intronic	NA
GBM_A_T1--4	chr5:35875523	C	NA	50	0	50	38.020	3.067	0	0	0	49	0	IL7R	intronic	NA
GBM_A_T1--5	chr5:35875523	C	NA	35	0	35	37.743	3.346	0	0	0	34	0	IL7R	intronic	NA
GBM_A_T1--6	chr5:35875523	C	NA	67	0	67	37.433	3.594	0	0	0	64	0	IL7R	intronic	NA
GBM_A_T1--7	chr5:35875523	C	NA	58	0	58	36.707	5.201	0	0	0	54	0	IL7R	intronic	NA
GBM_A_T1--8	chr5:35875523	C	NA	64	0	64	36.422	5.123	0	0	0	58	0	IL7R	intronic	NA
GBM_A_T1--GL	chr5:35875523	C	NA	89	0	89	36.966	5.010	0	0	0	83	0	IL7R	intronic	NA
GBM_A_T1--1	chr5:90445831	T	C	42	0.119	37	37.081	2.947	5	35.400	1.140	37	5	GPR98	intronic	NA
GBM_A_T1--2	chr5:90445831	T	NA	11	0	11	36.909	2.343	0	0	0	11	0	GPR98	intronic	NA
GBM_A_T1--3	chr5:90445831	T	C	43	0.209	34	38.059	2.943	9	38.000	2.693	34	9	GPR98	intronic	NA
GBM_A_T1--4	chr5:90445831	T	C	52	0.038	50	36.240	4.959	2	38.000	4.243	46	2	GPR98	intronic	NA
GBM_A_T1--5	chr5:90445831	T	NA	43	0	43	37.558	2.954	0	0	0	43	0	GPR98	intronic	NA
GBM_A_T1--6	chr5:90445831	T	NA	61	0	61	36.033	3.873	0	0	0	55	0	GPR98	intronic	NA
GBM_A_T1--7	chr5:90445831	T	C	62	0.016	61	36.541	4.407	1	33.000	0.000	59	1	GPR98	intronic	NA
GBM_A_T1--8	chr5:90445831	T	C	67	0.015	66	36.773	3.391	1	38.000	0.000	64	1	GPR98	intronic	NA
GBM_A_T1--GL	chr5:90445831	T	NA	101	0	101	36.040	4.452	0	0	0	90	0	GPR98	intronic	NA
GBM_A_T1--1	chr6:100009411	C	NA	16	0	16	37.562	2.920	0	0	0	16	0	CCNC	intronic	NA
GBM_A_T1--2	chr6:100009411	C	NA	14	0	14	38.071	2.921	0	0	0	14	0	CCNC	intronic	NA
GBM_A_T1--3	chr6:100009411	C	NA	17	0	17	37.882	3.480	0	0	0	16	0	CCNC	intronic	NA
GBM_A_T1--4	chr6:100009411	C	A	15	0.200	12	38.917	1.730	3	37.333	2.887	12	3	CCNC	intronic	NA
GBM_A_T1--5	chr6:100009411	C	NA	22	0	22	37.591	2.856	0	0	0	22	0	CCNC	intronic	NA
GBM_A_T1--6	chr6:100009411	C	NA	20	0	20	37.000	3.671	0	0	0	19	0	CCNC	intronic	NA
GBM_A_T1--7	chr6:100009411	C	NA	22	0	21	35.952	6.152	0	0	0	18	0	CCNC	intronic	NA
GBM_A_T1--8	chr6:100009411	C	NA	23	0	23	37.826	2.741	0	0	0	23	0	CCNC	intronic	NA
GBM_A_T1--GL	chr6:100009411	C	NA	40	0	39	36.487	4.740	0	0	0	36	0	CCNC	intronic	NA
GBM_A_T1--1	chr6:10411909	C	NA	29	0	29	35.724	2.520	0	0	0	29	0	TFAP2A	UTR5	NA
GBM_A_T1--2	chr6:10411909	C	T	11	0.273	8	34.125	7.936	3	35.000	7.211	7	2	TFAP2A	UTR5	NA
GBM_A_T1--3	chr6:10411909	C	NA	25	0	25	35.920	2.914	0	0	0	25	0	TFAP2A	UTR5	NA
GBM_A_T1--4	chr6:10411909	C	NA	33	0	33	35.697	4.700	0	0	0	31	0	TFAP2A	UTR5	NA
GBM_A_T1--5	chr6:10411909	C	NA	16	0	16	35.250	5.196	0	0	0	14	0	TFAP2A	UTR5	NA
GBM_A_T1--6	chr6:10411909	C	NA	31	0	31	34.323	5.237	0	0	0	27	0	TFAP2A	UTR5	NA
GBM_A_T1--7	chr6:10411909	C	NA	31	0	31	35.323	4.142	0	0	0	29	0	TFAP2A	UTR5	NA
GBM_A_T1--8	chr6:10411909	C	NA	32	0	31	33.548	5.501	0	0	0	27	0	TFAP2A	UTR5	NA
GBM_A_T1--GL	chr6:10411909	C	NA	55	0	55	33.400	5.958	0	0	0	48	0	TFAP2A	UTR5	NA
GBM_A_T1--1	chr6:132694127	C	NA	24	0	24	38.000	3.203	0	0	0	24	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:132694127	C	NA	14	0	14	37.071	4.341	0	0	0	13	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:132694127	C	NA	20	0	20	38.150	2.519	0	0	0	20	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:132694127	C	A	25	0.160	21	36.667	3.890	4	38.250	3.202	21	4	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:132694127	C	NA	22	0	22	38.000	3.207	0	0	0	22	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:132694127	C	NA	42	0	42	36.333	4.252	0	0	0	41	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:132694127	C	NA	25	0	25	36.480	5.205	0	0	0	24	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:132694127	C	NA	36	0	35	37.457	3.752	0	0	0	32	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:132694127	C	NA	54	0	54	37.093	4.675	0	0	0	51	0	MOXD1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:146215396	A	G	37	0.216	29	38.379	2.569	8	37.125	3.482	29	8	SHPRH	intronic	NA
GBM_A_T1--2	chr6:146215396	A	G	15	0.200	12	36.750	3.888	3	38.000	3.606	12	3	SHPRH	intronic	NA
GBM_A_T1--3	chr6:146215396	A	G	27	0.259	20	38.850	2.110	7	37.429	2.225	20	7	SHPRH	intronic	NA
GBM_A_T1--4	chr6:146215396	A	G	34	0.176	28	36.607	3.665	6	36.000	2.449	26	6	SHPRH	intronic	NA
GBM_A_T1--5	chr6:146215396	A	G	30	0.067	28	37.821	2.450	2	36.500	3.536	28	2	SHPRH	intronic	NA
GBM_A_T1--6	chr6:146215396	A	G	44	0.068	41	37.073	4.058	3	40.000	1.000	38	3	SHPRH	intronic	NA
GBM_A_T1--7	chr6:146215396	A	G	36	0.472	19	37.737	2.535	17	36.647	4.554	19	16	SHPRH	intronic	NA
GBM_A_T1--8	chr6:146215396	A	G	53	0.208	42	37.548	2.839	11	36.727	4.002	42	10	SHPRH	intronic	NA
GBM_A_T1--GL	chr6:146215396	A	NA	46	0	46	37.130	2.721	0	0	0	45	0	SHPRH	intronic	NA
GBM_A_T1--1	chr6:150157265	G	C	59	0.288	42	37.524	3.225	17	38.000	2.806	41	17	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:150157265	G	C	41	0.317	28	37.964	3.085	13	38.615	2.599	28	13	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:150157265	G	C	84	0.119	74	36.892	4.156	10	36.000	3.916	71	9	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:150157265	G	C	61	0.213	48	37.042	4.575	13	38.154	3.532	44	12	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:150157265	G	C	35	0.314	24	37.708	4.408	11	36.182	4.729	23	10	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:150157265	G	C	101	0.287	72	36.778	5.773	29	34.655	5.380	67	23	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:150157265	G	C	114	0.404	68	36.118	5.222	46	35.130	5.890	65	39	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:150157265	G	C	96	0.208	76	36.632	3.953	20	36.500	3.069	72	20	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:150157265	G	NA	138	0	138	36.594	5.308	0	0	0	129	0	LRP11	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:30862391	G	NA	20	0	20	33.400	6.840	0	0	0	18	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:30862391	G	NA	12	0	12	31.000	6.954	0	0	0	10	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:30862391	G	NA	18	0	18	35.833	2.595	0	0	0	18	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:30862391	G	A	19	0.211	15	34.800	2.178	4	35.500	1.000	15	4	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:30862391	G	NA	21	0	21	33.714	3.212	0	0	0	19	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:30862391	G	NA	25	0	25	33.680	4.543	0	0	0	23	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:30862391	G	NA	19	0	19	33.263	4.976	0	0	0	15	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:30862391	G	NA	30	0	30	32.300	5.664	0	0	0	26	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:30862391	G	NA	52	0	52	32.846	5.143	0	0	0	43	0	DDR1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:31937344	G	NA	14	0	14	36.714	3.268	0	0	0	14	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:31937344	G	NA	17	0	17	36.412	3.183	0	0	0	17	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:31937344	G	A	27	0.148	23	37.217	3.104	4	36.000	3.162	23	4	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:31937344	G	NA	20	0	20	36.000	3.853	0	0	0	18	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:31937344	G	NA	18	0	18	36.444	3.240	0	0	0	18	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:31937344	G	NA	14	0	14	36.214	3.886	0	0	0	13	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:31937344	G	NA	27	0	27	35.333	5.385	0	0	0	24	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:31937344	G	NA	20	0	20	36.100	3.768	0	0	0	19	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:31937344	G	NA	43	0	43	35.209	6.167	0	0	0	38	0	SKIV2L	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:32138862	C	NA	11	0	11	35.909	4.721	0	0	0	9	0	AGPAT1	intronic	NA
GBM_A_T1--2	chr6:32138862	C	NA	12	0	12	37.167	2.623	0	0	0	12	0	AGPAT1	intronic	NA
GBM_A_T1--3	chr6:32138862	C	A	14	0.214	11	36.364	3.585	3	35.000	5.000	11	3	AGPAT1	intronic	NA
GBM_A_T1--4	chr6:32138862	C	NA	13	0	13	34.538	4.892	0	0	0	12	0	AGPAT1	intronic	NA
GBM_A_T1--5	chr6:32138862	C	NA	27	0	27	34.222	7.159	0	0	0	25	0	AGPAT1	intronic	NA
GBM_A_T1--6	chr6:32138862	C	NA	15	0	15	34.800	4.814	0	0	0	13	0	AGPAT1	intronic	NA
GBM_A_T1--7	chr6:32138862	C	NA	14	0	14	33.857	5.021	0	0	0	12	0	AGPAT1	intronic	NA
GBM_A_T1--8	chr6:32138862	C	NA	13	0	13	34.769	6.071	0	0	0	12	0	AGPAT1	intronic	NA
GBM_A_T1--GL	chr6:32138862	C	NA	36	0	35	32.886	7.722	0	0	0	30	0	AGPAT1	intronic	NA
GBM_A_T1--1	chr6:32797110	C	NA	15	0	15	37.467	2.167	0	0	0	15	0	TAP2	intronic	NA
GBM_A_T1--2	chr6:32797110	C	A	15	0.200	12	37.417	2.678	3	35.000	3.000	12	3	TAP2	intronic	NA
GBM_A_T1--3	chr6:32797110	C	NA	14	0	14	37.929	2.401	0	0	0	14	0	TAP2	intronic	NA
GBM_A_T1--4	chr6:32797110	C	NA	12	0	12	37.833	2.517	0	0	0	12	0	TAP2	intronic	NA
GBM_A_T1--5	chr6:32797110	C	NA	24	0	24	36.458	4.672	0	0	0	23	0	TAP2	intronic	NA
GBM_A_T1--6	chr6:32797110	C	NA	21	0	21	35.000	4.615	0	0	0	17	0	TAP2	intronic	NA
GBM_A_T1--7	chr6:32797110	C	NA	28	0	26	37.192	2.953	0	0	0	25	0	TAP2	intronic	NA
GBM_A_T1--8	chr6:32797110	C	NA	23	0	23	36.696	4.656	0	0	0	22	0	TAP2	intronic	NA
GBM_A_T1--GL	chr6:32797110	C	NA	48	0	48	35.375	5.034	0	0	0	46	0	TAP2	intronic	NA
GBM_A_T1--1	chr6:33623528	C	NA	30	0	30	35.633	2.942	0	0	0	30	0	ITPR3	intronic	NA
GBM_A_T1--2	chr6:33623528	C	A	10	0.300	7	37.571	2.225	3	37.667	3.512	7	3	ITPR3	intronic	NA
GBM_A_T1--3	chr6:33623528	C	NA	21	0	20	34.750	3.007	0	0	0	19	0	ITPR3	intronic	NA
GBM_A_T1--4	chr6:33623528	C	NA	23	0	23	35.783	4.552	0	0	0	22	0	ITPR3	intronic	NA
GBM_A_T1--5	chr6:33623528	C	NA	14	0	14	34.143	6.632	0	0	0	11	0	ITPR3	intronic	NA
GBM_A_T1--6	chr6:33623528	C	NA	23	0	23	35.000	4.232	0	0	0	22	0	ITPR3	intronic	NA
GBM_A_T1--7	chr6:33623528	C	NA	20	0	20	35.400	7.500	0	0	0	19	0	ITPR3	intronic	NA
GBM_A_T1--8	chr6:33623528	C	NA	24	0	24	34.875	3.745	0	0	0	24	0	ITPR3	intronic	NA
GBM_A_T1--GL	chr6:33623528	C	NA	52	0	52	35.269	3.931	0	0	0	49	0	ITPR3	intronic	NA
GBM_A_T1--1	chr6:33657843	C	A	26	0.077	24	36.167	3.017	2	37.000	1.414	23	2	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:33657843	C	NA	13	0	13	34.615	3.820	0	0	0	11	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:33657843	C	NA	37	0	37	35.000	3.300	0	0	0	34	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:33657843	C	A	35	0.143	30	34.033	5.933	5	34.600	0.894	27	5	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:33657843	C	NA	16	0	16	34.312	3.049	0	0	0	15	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:33657843	C	NA	51	0	51	34.020	4.628	0	0	0	45	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:33657843	C	NA	38	0	38	35.237	3.316	0	0	0	36	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:33657843	C	A	40	0.025	39	35.718	4.839	1	35.000	0.000	37	1	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:33657843	C	NA	52	0	51	35.020	3.379	0	0	0	48	0	ITPR3	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:37467663	C	NA	38	0	38	35.974	3.605	0	0	0	36	0	CCDC167	UTR5	NA
GBM_A_T1--2	chr6:37467663	C	NA	20	0	20	35.800	1.881	0	0	0	20	0	CCDC167	UTR5	NA
GBM_A_T1--3	chr6:37467663	C	NA	37	0	37	34.514	5.541	0	0	0	32	0	CCDC167	UTR5	NA
GBM_A_T1--4	chr6:37467663	C	NA	43	0	43	36.233	3.578	0	0	0	41	0	CCDC167	UTR5	NA
GBM_A_T1--5	chr6:37467663	C	A	17	0.176	14	35.714	5.413	3	36.667	2.517	13	3	CCDC167	UTR5	NA
GBM_A_T1--6	chr6:37467663	C	NA	41	0	41	35.293	4.320	0	0	0	39	0	CCDC167	UTR5	NA
GBM_A_T1--7	chr6:37467663	C	NA	41	0	41	36.317	3.350	0	0	0	39	0	CCDC167	UTR5	NA
GBM_A_T1--8	chr6:37467663	C	NA	46	0	46	35.174	4.850	0	0	0	42	0	CCDC167	UTR5	NA
GBM_A_T1--GL	chr6:37467663	C	NA	67	0	67	34.284	5.611	0	0	0	59	0	CCDC167	UTR5	NA
GBM_A_T1--1	chr6:39034061	C	NA	21	0	21	36.714	2.866	0	0	0	20	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:39034061	C	NA	11	0	11	37.000	2.720	0	0	0	11	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:39034061	C	NA	24	0	24	34.083	6.473	0	0	0	22	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:39034061	C	NA	23	0	23	37.087	2.661	0	0	0	23	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:39034061	C	NA	10	0	10	37.400	2.271	0	0	0	10	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:39034061	C	NA	31	0	31	32.581	7.903	0	0	0	26	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:39034061	C	T	21	0.190	17	35.471	7.324	4	33.250	9.605	16	3	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:39034061	C	NA	37	0	37	36.027	4.456	0	0	0	32	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:39034061	C	NA	47	0	47	35.660	4.793	0	0	0	41	0	GLP1R	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:42072883	C	NA	28	0	28	34.000	7.185	0	0	0	24	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr6:42072883	C	NA	14	0	14	32.143	7.220	0	0	0	11	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr6:42072883	C	NA	24	0	24	35.625	4.547	0	0	0	22	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr6:42072883	C	NA	25	0	25	35.240	3.972	0	0	0	24	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr6:42072883	C	A	22	0.182	18	37.056	4.988	4	34.750	1.258	17	4	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr6:42072883	C	NA	22	0	22	32.545	5.869	0	0	0	16	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr6:42072883	C	NA	29	0	29	35.655	3.648	0	0	0	29	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr6:42072883	C	NA	20	0	18	35.778	3.843	0	0	0	18	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr6:42072883	C	NA	51	0	51	33.490	8.033	0	0	0	40	0	C6orf132	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr6:5000171	C	NA	47	0	47	39.149	2.236	0	0	0	47	0	RPP40	intronic	NA
GBM_A_T1--2	chr6:5000171	C	A	17	0.176	14	38.714	2.234	3	37.667	3.055	14	3	RPP40	intronic	NA
GBM_A_T1--3	chr6:5000171	C	NA	32	0	32	38.156	3.794	0	0	0	30	0	RPP40	intronic	NA
GBM_A_T1--4	chr6:5000171	C	NA	51	0	51	38.294	5.190	0	0	0	49	0	RPP40	intronic	NA
GBM_A_T1--5	chr6:5000171	C	NA	34	0	34	38.647	2.411	0	0	0	34	0	RPP40	intronic	NA
GBM_A_T1--6	chr6:5000171	C	NA	62	0	61	37.803	3.846	0	0	0	58	0	RPP40	intronic	NA
GBM_A_T1--7	chr6:5000171	C	NA	58	0	58	38.448	2.542	0	0	0	58	0	RPP40	intronic	NA
GBM_A_T1--8	chr6:5000171	C	NA	64	0	64	37.828	4.949	0	0	0	62	0	RPP40	intronic	NA
GBM_A_T1--GL	chr6:5000171	C	NA	80	0	80	37.438	3.276	0	0	0	77	0	RPP40	intronic	NA
GBM_A_T1--1	chr6:80878504	A	NA	52	0	52	33.365	6.136	0	0	0	44	0	BCKDHB	intronic	NA
GBM_A_T1--2	chr6:80878504	A	NA	14	0	14	33.357	5.271	0	0	0	12	0	BCKDHB	intronic	NA
GBM_A_T1--3	chr6:80878504	A	NA	37	0	37	34.622	5.392	0	0	0	34	0	BCKDHB	intronic	NA
GBM_A_T1--4	chr6:80878504	A	NA	51	0	51	34.039	6.274	0	0	0	44	0	BCKDHB	intronic	NA
GBM_A_T1--5	chr6:80878504	A	G	31	0.226	24	35.417	3.611	7	36.143	4.018	22	7	BCKDHB	intronic	NA
GBM_A_T1--6	chr6:80878504	A	NA	57	0	56	32.768	7.582	0	0	0	48	0	BCKDHB	intronic	NA
GBM_A_T1--7	chr6:80878504	A	G	39	0.026	37	31.622	8.348	1	40.000	0.000	31	1	BCKDHB	intronic	NA
GBM_A_T1--8	chr6:80878504	A	NA	52	0	52	34.096	6.117	0	0	0	44	0	BCKDHB	intronic	NA
GBM_A_T1--GL	chr6:80878504	A	NA	91	0	89	32.539	7.662	0	0	0	73	0	BCKDHB	intronic	NA
GBM_A_T1--1	chr6:80878508	A	NA	59	0	59	34.525	6.224	0	0	0	53	0	BCKDHB	intronic	NA
GBM_A_T1--2	chr6:80878508	A	NA	16	0	16	33.312	7.622	0	0	0	15	0	BCKDHB	intronic	NA
GBM_A_T1--3	chr6:80878508	A	NA	42	0	42	35.476	3.473	0	0	0	41	0	BCKDHB	intronic	NA
GBM_A_T1--4	chr6:80878508	A	NA	54	0	54	34.444	5.999	0	0	0	46	0	BCKDHB	intronic	NA
GBM_A_T1--5	chr6:80878508	A	G	34	0.294	23	35.783	4.156	10	35.900	4.280	22	9	BCKDHB	intronic	NA
GBM_A_T1--6	chr6:80878508	A	NA	66	0	66	33.773	4.176	0	0	0	60	0	BCKDHB	intronic	NA
GBM_A_T1--7	chr6:80878508	A	G	46	0.043	44	32.773	6.813	2	33.500	10.607	38	1	BCKDHB	intronic	NA
GBM_A_T1--8	chr6:80878508	A	NA	58	0	57	33.544	6.202	0	0	0	48	0	BCKDHB	intronic	NA
GBM_A_T1--GL	chr6:80878508	A	NA	94	0	93	33.301	6.465	0	0	0	76	0	BCKDHB	intronic	NA
GBM_A_T1--1	chr7:100388605	C	NA	26	0	26	36.615	2.299	0	0	0	26	0	ZAN	exonic	unknown
GBM_A_T1--2	chr7:100388605	C	A	20	0.200	16	36.062	4.171	4	36.000	1.155	15	4	ZAN	exonic	unknown
GBM_A_T1--3	chr7:100388605	C	NA	36	0	36	37.639	2.332	0	0	0	36	0	ZAN	exonic	unknown
GBM_A_T1--4	chr7:100388605	C	NA	29	0	29	36.552	2.971	0	0	0	28	0	ZAN	exonic	unknown
GBM_A_T1--5	chr7:100388605	C	NA	20	0	20	36.200	5.105	0	0	0	19	0	ZAN	exonic	unknown
GBM_A_T1--6	chr7:100388605	C	NA	37	0	37	35.919	3.940	0	0	0	35	0	ZAN	exonic	unknown
GBM_A_T1--7	chr7:100388605	C	NA	35	0	35	35.571	4.327	0	0	0	33	0	ZAN	exonic	unknown
GBM_A_T1--8	chr7:100388605	C	NA	36	0	36	36.444	2.792	0	0	0	35	0	ZAN	exonic	unknown
GBM_A_T1--GL	chr7:100388605	C	NA	57	0	57	34.649	5.403	0	0	0	52	0	ZAN	exonic	unknown
GBM_A_T1--1	chr7:100608268	C	NA	25	0	25	35.200	6.258	0	0	0	23	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--2	chr7:100608268	C	T	11	0.091	10	36.400	4.088	1	41.000	0.000	9	1	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--3	chr7:100608268	C	NA	14	0	14	38.071	3.562	0	0	0	14	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--4	chr7:100608268	C	NA	14	0	14	37.000	3.573	0	0	0	14	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--5	chr7:100608268	C	T	18	0.278	13	36.385	3.150	5	36.000	3.162	13	5	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--6	chr7:100608268	C	NA	25	0	24	34.458	6.852	0	0	0	21	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--7	chr7:100608268	C	NA	22	0	22	36.045	4.018	0	0	0	21	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--8	chr7:100608268	C	NA	24	0	23	35.826	3.701	0	0	0	22	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--GL	chr7:100608268	C	NA	51	0	51	36.353	3.804	0	0	0	49	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
GBM_A_T1--1	chr7:102952454	C	NA	22	0	22	37.364	3.185	0	0	0	22	0	PMPCB	intronic	NA
GBM_A_T1--2	chr7:102952454	C	NA	12	0	12	35.083	5.035	0	0	0	11	0	PMPCB	intronic	NA
GBM_A_T1--3	chr7:102952454	C	NA	34	0	34	37.588	3.702	0	0	0	33	0	PMPCB	intronic	NA
GBM_A_T1--4	chr7:102952454	C	NA	19	0	19	36.947	3.472	0	0	0	19	0	PMPCB	intronic	NA
GBM_A_T1--5	chr7:102952454	C	NA	27	0	27	36.889	3.093	0	0	0	27	0	PMPCB	intronic	NA
GBM_A_T1--6	chr7:102952454	C	A	26	0.154	22	37.636	3.094	4	38.250	2.986	22	4	PMPCB	intronic	NA
GBM_A_T1--7	chr7:102952454	C	NA	37	0	37	37.324	4.522	0	0	0	35	0	PMPCB	intronic	NA
GBM_A_T1--8	chr7:102952454	C	NA	42	0	41	36.293	4.360	0	0	0	38	0	PMPCB	intronic	NA
GBM_A_T1--GL	chr7:102952454	C	NA	93	0	93	36.892	3.279	0	0	0	91	0	PMPCB	intronic	NA
GBM_A_T1--1	chr7:20768036	A	T	74	0.203	59	37.339	3.492	15	37.533	2.722	56	15	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr7:20768036	A	T	36	0.111	32	36.812	4.410	4	32.750	6.500	30	3	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr7:20768036	A	T	50	0.080	46	38.326	3.092	4	37.000	4.082	45	4	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr7:20768036	A	T	60	0.083	55	37.673	3.854	5	36.800	6.573	51	4	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr7:20768036	A	T	34	0.324	23	36.348	5.621	11	36.455	3.778	21	11	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr7:20768036	A	T	89	0.337	59	36.831	5.230	30	37.600	3.829	55	28	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr7:20768036	A	T	64	0.594	26	37.192	3.784	38	36.184	4.223	25	35	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr7:20768036	A	T	80	0.225	62	37.097	4.268	18	37.167	4.062	58	16	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr7:20768036	A	NA	91	0	90	36.489	5.060	0	0	0	84	0	ABCB5	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr7:23293939	C	NA	27	0	27	37.000	4.788	0	0	0	26	0	GPNMB	intronic	NA
GBM_A_T1--2	chr7:23293939	C	NA	12	0	12	37.250	2.417	0	0	0	12	0	GPNMB	intronic	NA
GBM_A_T1--3	chr7:23293939	C	A	18	0.167	15	35.400	4.256	3	38.667	3.215	13	3	GPNMB	intronic	NA
GBM_A_T1--4	chr7:23293939	C	NA	26	0	26	34.731	7.006	0	0	0	23	0	GPNMB	intronic	NA
GBM_A_T1--5	chr7:23293939	C	NA	18	0	18	36.778	3.703	0	0	0	17	0	GPNMB	intronic	NA
GBM_A_T1--6	chr7:23293939	C	NA	24	0	24	36.875	2.365	0	0	0	24	0	GPNMB	intronic	NA
GBM_A_T1--7	chr7:23293939	C	NA	29	0	29	36.793	2.969	0	0	0	29	0	GPNMB	intronic	NA
GBM_A_T1--8	chr7:23293939	C	NA	40	0	40	36.025	3.198	0	0	0	39	0	GPNMB	intronic	NA
GBM_A_T1--GL	chr7:23293939	C	NA	52	0	52	36.038	3.349	0	0	0	50	0	GPNMB	intronic	NA
GBM_A_T1--1	chr7:23740527	T	NA	19	0	19	35.316	5.344	0	0	0	17	0	FAM221A	intronic	NA
GBM_A_T1--2	chr7:23740527	T	NA	17	0	17	36.353	3.481	0	0	0	16	0	FAM221A	intronic	NA
GBM_A_T1--3	chr7:23740527	T	NA	20	0	20	38.650	3.281	0	0	0	20	0	FAM221A	intronic	NA
GBM_A_T1--4	chr7:23740527	T	NA	19	0	19	37.947	2.738	0	0	0	19	0	FAM221A	intronic	NA
GBM_A_T1--5	chr7:23740527	T	C	11	0.273	8	38.125	3.482	3	36.000	6.245	8	2	FAM221A	intronic	NA
GBM_A_T1--6	chr7:23740527	T	NA	42	0	42	36.786	5.135	0	0	0	41	0	FAM221A	intronic	NA
GBM_A_T1--7	chr7:23740527	T	NA	35	0	35	36.143	3.919	0	0	0	33	0	FAM221A	intronic	NA
GBM_A_T1--8	chr7:23740527	T	NA	31	0	31	36.968	3.911	0	0	0	30	0	FAM221A	intronic	NA
GBM_A_T1--GL	chr7:23740527	T	NA	59	0	59	36.797	5.520	0	0	0	56	0	FAM221A	intronic	NA
GBM_A_T1--1	chr7:24331349	C	NA	49	0	49	38.469	3.392	0	0	0	48	0	NPY	UTR3	NA
GBM_A_T1--2	chr7:24331349	C	A	20	0.200	16	38.875	3.828	4	38.750	2.217	15	4	NPY	UTR3	NA
GBM_A_T1--3	chr7:24331349	C	NA	37	0	37	37.946	3.358	0	0	0	37	0	NPY	UTR3	NA
GBM_A_T1--4	chr7:24331349	C	A	50	0.040	48	38.750	2.347	2	38.000	4.243	48	2	NPY	UTR3	NA
GBM_A_T1--5	chr7:24331349	C	NA	23	0	23	38.391	2.692	0	0	0	23	0	NPY	UTR3	NA
GBM_A_T1--6	chr7:24331349	C	NA	71	0	71	37.113	4.909	0	0	0	67	0	NPY	UTR3	NA
GBM_A_T1--7	chr7:24331349	C	NA	48	0	48	37.500	4.458	0	0	0	46	0	NPY	UTR3	NA
GBM_A_T1--8	chr7:24331349	C	NA	75	0	75	35.680	6.021	0	0	0	66	0	NPY	UTR3	NA
GBM_A_T1--GL	chr7:24331349	C	NA	80	0	80	35.725	5.735	0	0	0	67	0	NPY	UTR3	NA
GBM_A_T1--1	chr7:36459038	A	G	55	0.127	48	38.188	3.841	7	35.000	11.210	45	6	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr7:36459038	A	G	33	0.333	22	38.500	2.790	11	38.364	2.803	22	11	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr7:36459038	A	G	48	0.104	43	37.767	4.445	5	33.800	5.357	41	4	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr7:36459038	A	G	58	0.138	50	37.620	3.263	8	37.375	3.159	49	8	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr7:36459038	A	G	37	0.189	30	37.967	2.553	7	37.714	2.984	30	7	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr7:36459038	A	G	83	0.446	45	37.622	3.193	37	37.432	3.508	45	36	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr7:36459038	A	G	50	0.440	28	36.393	4.508	22	33.500	8.422	25	17	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr7:36459038	A	G	80	0.325	54	37.444	3.026	26	36.500	3.829	53	24	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr7:36459038	A	NA	118	0	118	35.627	6.811	0	0	0	107	0	ANLN	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr7:36934589	C	NA	41	0	41	37.146	3.167	0	0	0	40	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr7:36934589	C	A	19	0.158	16	35.188	7.968	3	40.000	1.000	15	3	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr7:36934589	C	NA	44	0	44	36.727	6.263	0	0	0	40	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr7:36934589	C	A	58	0.034	56	37.804	3.030	2	37.500	4.950	56	2	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr7:36934589	C	NA	20	0	20	38.200	2.587	0	0	0	20	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr7:36934589	C	NA	31	0	31	36.935	3.245	0	0	0	29	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr7:36934589	C	NA	44	0	44	34.364	6.195	0	0	0	35	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr7:36934589	C	NA	56	0	56	36.000	6.093	0	0	0	51	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr7:36934589	C	NA	61	0	61	36.557	4.849	0	0	0	54	0	ELMO1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr7:48547675	C	NA	45	0	45	37.022	5.841	0	0	0	42	0	ABCA13	intronic	NA
GBM_A_T1--2	chr7:48547675	C	A	11	0.273	8	39.125	2.232	3	38.667	2.082	8	3	ABCA13	intronic	NA
GBM_A_T1--3	chr7:48547675	C	NA	44	0	44	37.568	3.605	0	0	0	43	0	ABCA13	intronic	NA
GBM_A_T1--4	chr7:48547675	C	NA	30	0	30	38.733	2.303	0	0	0	30	0	ABCA13	intronic	NA
GBM_A_T1--5	chr7:48547675	C	NA	20	0	20	37.400	2.703	0	0	0	20	0	ABCA13	intronic	NA
GBM_A_T1--6	chr7:48547675	C	NA	35	0	35	37.600	3.274	0	0	0	34	0	ABCA13	intronic	NA
GBM_A_T1--7	chr7:48547675	C	NA	24	0	24	36.708	6.403	0	0	0	23	0	ABCA13	intronic	NA
GBM_A_T1--8	chr7:48547675	C	NA	39	0	39	35.949	6.509	0	0	0	34	0	ABCA13	intronic	NA
GBM_A_T1--GL	chr7:48547675	C	NA	74	0	73	36.726	4.008	0	0	0	70	0	ABCA13	intronic	NA
GBM_A_T1--1	chr7:55466318	C	NA	84	0	84	35.952	5.905	0	0	0	76	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--2	chr7:55466318	C	A	27	0.148	23	36.913	2.627	4	36.750	1.500	23	4	LANCL2	exonic	synonymous_SNV
GBM_A_T1--3	chr7:55466318	C	NA	53	0	53	36.717	3.825	0	0	0	52	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--4	chr7:55466318	C	A	66	0.015	65	36.462	3.675	1	39.000	0.000	63	1	LANCL2	exonic	synonymous_SNV
GBM_A_T1--5	chr7:55466318	C	NA	48	0	48	36.917	3.891	0	0	0	44	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--6	chr7:55466318	C	NA	89	0	89	35.854	4.300	0	0	0	86	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--7	chr7:55466318	C	NA	106	0	106	35.509	4.884	0	0	0	100	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--8	chr7:55466318	C	A	122	0.008	121	35.545	4.642	1	32.000	0.000	109	1	LANCL2	exonic	synonymous_SNV
GBM_A_T1--GL	chr7:55466318	C	NA	115	0	115	35.104	5.715	0	0	0	102	0	LANCL2	exonic	synonymous_SNV
GBM_A_T1--1	chr7:6452679	C	NA	22	0	22	39.273	2.164	0	0	0	22	0	DAGLB	intronic	NA
GBM_A_T1--2	chr7:6452679	C	A	15	0.200	12	36.167	4.589	3	36.667	3.786	11	3	DAGLB	intronic	NA
GBM_A_T1--3	chr7:6452679	C	NA	18	0	18	38.778	5.024	0	0	0	17	0	DAGLB	intronic	NA
GBM_A_T1--4	chr7:6452679	C	NA	20	0	20	38.000	3.146	0	0	0	20	0	DAGLB	intronic	NA
GBM_A_T1--5	chr7:6452679	C	NA	15	0	15	36.333	4.577	0	0	0	14	0	DAGLB	intronic	NA
GBM_A_T1--6	chr7:6452679	C	NA	39	0	39	36.641	3.835	0	0	0	38	0	DAGLB	intronic	NA
GBM_A_T1--7	chr7:6452679	C	NA	33	0	33	36.121	5.583	0	0	0	30	0	DAGLB	intronic	NA
GBM_A_T1--8	chr7:6452679	C	NA	32	0	32	36.656	4.783	0	0	0	29	0	DAGLB	intronic	NA
GBM_A_T1--GL	chr7:6452679	C	NA	67	0	67	37.164	4.122	0	0	0	64	0	DAGLB	intronic	NA
GBM_A_T1--1	chr7:7551405	G	A	54	0.278	39	38.795	2.736	15	38.800	2.678	39	15	COL28A1	intronic	NA
GBM_A_T1--2	chr7:7551405	G	NA	13	0	13	34.077	7.577	0	0	0	11	0	COL28A1	intronic	NA
GBM_A_T1--3	chr7:7551405	G	A	51	0.098	46	37.957	5.629	5	40.000	2.236	43	5	COL28A1	intronic	NA
GBM_A_T1--4	chr7:7551405	G	A	63	0.127	55	37.309	5.167	8	38.750	2.375	54	8	COL28A1	intronic	NA
GBM_A_T1--5	chr7:7551405	G	A	32	0.156	27	37.074	5.061	5	33.600	14.876	23	4	COL28A1	intronic	NA
GBM_A_T1--6	chr7:7551405	G	A	63	0.397	38	36.368	6.623	25	37.800	4.463	34	24	COL28A1	intronic	NA
GBM_A_T1--7	chr7:7551405	G	A	41	0.463	22	35.864	5.427	19	38.263	3.106	20	19	COL28A1	intronic	NA
GBM_A_T1--8	chr7:7551405	G	A	59	0.136	51	36.098	5.686	8	37.000	4.690	47	7	COL28A1	intronic	NA
GBM_A_T1--GL	chr7:7551405	G	NA	92	0	92	36.576	5.325	0	0	0	84	0	COL28A1	intronic	NA
GBM_A_T1--1	chr7:82585187	G	A	60	0.267	44	39.136	2.716	16	38.000	2.422	43	16	PCLO	exonic	synonymous_SNV
GBM_A_T1--2	chr7:82585187	G	A	42	0.262	31	37.387	5.252	11	39.000	1.897	29	11	PCLO	exonic	synonymous_SNV
GBM_A_T1--3	chr7:82585187	G	A	44	0.091	40	38.350	3.534	4	38.250	3.403	38	4	PCLO	exonic	synonymous_SNV
GBM_A_T1--4	chr7:82585187	G	A	60	0.233	45	38.422	3.019	14	38.714	2.813	44	14	PCLO	exonic	synonymous_SNV
GBM_A_T1--5	chr7:82585187	G	A	42	0.238	31	38.097	3.789	10	39.600	2.011	30	10	PCLO	exonic	synonymous_SNV
GBM_A_T1--6	chr7:82585187	G	A	75	0.267	55	37.000	4.718	20	36.900	4.154	51	19	PCLO	exonic	synonymous_SNV
GBM_A_T1--7	chr7:82585187	G	A	79	0.468	42	37.357	6.140	37	37.189	3.733	38	35	PCLO	exonic	synonymous_SNV
GBM_A_T1--8	chr7:82585187	G	A	81	0.284	58	37.983	3.081	23	36.174	4.509	58	21	PCLO	exonic	synonymous_SNV
GBM_A_T1--GL	chr7:82585187	G	NA	114	0	114	37.588	3.915	0	0	0	110	0	PCLO	exonic	synonymous_SNV
GBM_A_T1--1	chr7:889678	C	NA	19	0	19	35.737	3.364	0	0	0	18	0	SUN1	intronic	NA
GBM_A_T1--2	chr7:889678	C	NA	13	0	13	33.462	4.701	0	0	0	9	0	SUN1	intronic	NA
GBM_A_T1--3	chr7:889678	C	A	14	0.286	10	35.400	4.452	4	33.750	2.217	9	4	SUN1	intronic	NA
GBM_A_T1--4	chr7:889678	C	NA	13	0	13	35.077	5.838	0	0	0	11	0	SUN1	intronic	NA
GBM_A_T1--5	chr7:889678	C	NA	16	0	16	35.625	2.217	0	0	0	16	0	SUN1	intronic	NA
GBM_A_T1--6	chr7:889678	C	NA	30	0	30	34.767	3.775	0	0	0	28	0	SUN1	intronic	NA
GBM_A_T1--7	chr7:889678	C	NA	20	0	20	33.650	5.254	0	0	0	16	0	SUN1	intronic	NA
GBM_A_T1--8	chr7:889678	C	A	22	0.045	21	35.857	4.464	1	31.000	0.000	20	1	SUN1	intronic	NA
GBM_A_T1--GL	chr7:889678	C	NA	53	0	53	33.170	4.874	0	0	0	43	0	SUN1	intronic	NA
GBM_A_T1--1	chr7:91718857	C	NA	45	0	45	37.356	5.095	0	0	0	42	0	AKAP9	intronic	NA
GBM_A_T1--2	chr7:91718857	C	NA	11	0	11	39.818	2.272	0	0	0	11	0	AKAP9	intronic	NA
GBM_A_T1--3	chr7:91718857	C	NA	35	0	35	38.086	2.513	0	0	0	35	0	AKAP9	intronic	NA
GBM_A_T1--4	chr7:91718857	C	NA	51	0	51	37.961	3.111	0	0	0	51	0	AKAP9	intronic	NA
GBM_A_T1--5	chr7:91718857	C	NA	24	0	24	38.000	3.388	0	0	0	23	0	AKAP9	intronic	NA
GBM_A_T1--6	chr7:91718857	C	NA	56	0	56	37.804	2.857	0	0	0	56	0	AKAP9	intronic	NA
GBM_A_T1--7	chr7:91718857	C	G	58	0.500	29	36.793	4.443	29	36.483	7.145	28	27	AKAP9	intronic	NA
GBM_A_T1--8	chr7:91718857	C	G	68	0.015	67	38.194	2.846	1	35.000	0.000	67	1	AKAP9	intronic	NA
GBM_A_T1--GL	chr7:91718857	C	NA	91	0	91	37.286	3.897	0	0	0	88	0	AKAP9	intronic	NA
GBM_A_T1--1	chr7:94056523	T	NA	126	0	126	37.571	5.093	0	0	0	120	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--2	chr7:94056523	T	NA	47	0	47	37.894	5.557	0	0	0	45	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--3	chr7:94056523	T	NA	100	0	100	36.800	5.392	0	0	0	94	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--4	chr7:94056523	T	NA	114	0	114	37.386	4.552	0	0	0	108	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--5	chr7:94056523	T	NA	70	0	70	37.914	3.087	0	0	0	69	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--6	chr7:94056523	T	NA	134	0	134	36.724	4.201	0	0	0	130	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--7	chr7:94056523	T	C	120	0.342	79	36.506	3.938	41	36.927	4.251	74	38	COL1A2	exonic	synonymous_SNV
GBM_A_T1--8	chr7:94056523	T	C	142	0.007	141	36.475	4.505	1	41.000	0.000	132	1	COL1A2	exonic	synonymous_SNV
GBM_A_T1--GL	chr7:94056523	T	NA	191	0	189	35.926	5.929	0	0	0	174	0	COL1A2	exonic	synonymous_SNV
GBM_A_T1--1	chr7:95442690	T	NA	23	0	22	28.955	4.746	0	0	0	11	0	DYNC1I1	intronic	NA
GBM_A_T1--2	chr7:95442690	T	NA	12	0	12	27.500	7.610	0	0	0	7	0	DYNC1I1	intronic	NA
GBM_A_T1--3	chr7:95442690	T	NA	27	0	27	28.778	6.028	0	0	0	15	0	DYNC1I1	intronic	NA
GBM_A_T1--4	chr7:95442690	T	A	29	0.207	23	31.000	5.477	6	33.333	3.204	15	5	DYNC1I1	intronic	NA
GBM_A_T1--5	chr7:95442690	T	NA	18	0	17	28.471	3.826	0	0	0	9	0	DYNC1I1	intronic	NA
GBM_A_T1--6	chr7:95442690	T	A	40	0.125	35	27.457	6.541	5	32.200	5.215	20	4	DYNC1I1	intronic	NA
GBM_A_T1--7	chr7:95442690	T	NA	22	0	19	29.000	6.155	0	0	0	14	0	DYNC1I1	intronic	NA
GBM_A_T1--8	chr7:95442690	T	NA	40	0	36	26.500	6.914	0	0	0	18	0	DYNC1I1	intronic	NA
GBM_A_T1--GL	chr7:95442690	T	NA	51	0	50	27.560	6.456	0	0	0	25	0	DYNC1I1	intronic	NA
GBM_A_T1--1	chr8:119774401	T	NA	27	0	27	36.852	3.243	0	0	0	27	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--2	chr8:119774401	T	C	13	0.231	10	35.700	5.889	3	34.667	1.528	9	3	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--3	chr8:119774401	T	NA	34	0	34	36.882	2.717	0	0	0	34	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--4	chr8:119774401	T	C	34	0.029	33	37.152	3.374	1	41.000	0.000	32	1	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--5	chr8:119774401	T	NA	20	0	20	36.400	4.005	0	0	0	19	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--6	chr8:119774401	T	NA	42	0	42	35.500	3.952	0	0	0	40	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--7	chr8:119774401	T	NA	25	0	25	35.320	4.543	0	0	0	23	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--8	chr8:119774401	T	NA	32	0	32	36.438	4.332	0	0	0	31	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--GL	chr8:119774401	T	NA	51	0	51	36.157	4.713	0	0	0	45	0	SAMD12-AS1(dist=36095),TNFRSF11B(dist=161395)	intergenic	NA
GBM_A_T1--1	chr8:133909769	T	A	13	0.308	8	34.375	9.724	4	39.500	3.000	7	4	TG	intronic	NA
GBM_A_T1--2	chr8:133909769	T	NA	10	0	10	37.200	4.590	0	0	0	9	0	TG	intronic	NA
GBM_A_T1--3	chr8:133909769	T	NA	20	0	20	36.900	5.990	0	0	0	19	0	TG	intronic	NA
GBM_A_T1--4	chr8:133909769	T	NA	16	0	16	35.375	6.109	0	0	0	14	0	TG	intronic	NA
GBM_A_T1--5	chr8:133909769	T	NA	24	0	24	36.000	4.243	0	0	0	22	0	TG	intronic	NA
GBM_A_T1--6	chr8:133909769	T	NA	18	0	18	35.056	7.635	0	0	0	16	0	TG	intronic	NA
GBM_A_T1--7	chr8:133909769	T	NA	26	0	26	34.269	8.455	0	0	0	21	0	TG	intronic	NA
GBM_A_T1--8	chr8:133909769	T	A	26	0.115	23	35.391	6.576	3	37.667	4.163	21	3	TG	intronic	NA
GBM_A_T1--GL	chr8:133909769	T	NA	49	0	49	34.816	6.088	0	0	0	43	0	TG	intronic	NA
GBM_A_T1--1	chr8:17067995	C	NA	51	0	51	37.216	3.591	0	0	0	50	0	ZDHHC2	intronic	NA
GBM_A_T1--2	chr8:17067995	C	A	16	0.250	12	38.250	2.417	4	38.500	3.000	12	4	ZDHHC2	intronic	NA
GBM_A_T1--3	chr8:17067995	C	NA	36	0	36	36.861	4.210	0	0	0	34	0	ZDHHC2	intronic	NA
GBM_A_T1--4	chr8:17067995	C	NA	30	0	30	37.267	3.895	0	0	0	27	0	ZDHHC2	intronic	NA
GBM_A_T1--5	chr8:17067995	C	A	41	0.024	40	36.975	3.262	1	41.000	0.000	38	1	ZDHHC2	intronic	NA
GBM_A_T1--6	chr8:17067995	C	NA	63	0	63	36.270	3.432	0	0	0	60	0	ZDHHC2	intronic	NA
GBM_A_T1--7	chr8:17067995	C	NA	43	0	43	36.837	4.407	0	0	0	40	0	ZDHHC2	intronic	NA
GBM_A_T1--8	chr8:17067995	C	NA	46	0	46	36.935	4.030	0	0	0	43	0	ZDHHC2	intronic	NA
GBM_A_T1--GL	chr8:17067995	C	NA	45	0	45	35.800	3.769	0	0	0	43	0	ZDHHC2	intronic	NA
GBM_A_T1--1	chr8:1806049	T	NA	53	0	28	37.429	5.514	0	0	0	26	0	ARHGEF10	intronic	NA
GBM_A_T1--2	chr8:1806049	T	NA	16	0	6	37.333	6.623	0	0	0	5	0	ARHGEF10	intronic	NA
GBM_A_T1--3	chr8:1806049	T	NA	49	0	25	39.280	2.836	0	0	0	25	0	ARHGEF10	intronic	NA
GBM_A_T1--4	chr8:1806049	T	NA	38	0	18	38.667	2.870	0	0	0	18	0	ARHGEF10	intronic	NA
GBM_A_T1--5	chr8:1806049	T	NA	29	0	13	38.385	3.885	0	0	0	12	0	ARHGEF10	intronic	NA
GBM_A_T1--6	chr8:1806049	T	NA	57	0	31	37.484	4.725	0	0	0	30	0	ARHGEF10	intronic	NA
GBM_A_T1--7	chr8:1806049	T	NA	56	0	28	38.179	2.709	0	0	0	28	0	ARHGEF10	intronic	NA
GBM_A_T1--8	chr8:1806049	T	G	53	0.113	29	39.310	2.020	6	36.500	2.588	29	6	ARHGEF10	intronic	NA
GBM_A_T1--GL	chr8:1806049	T	NA	117	0	62	36.484	6.345	0	0	0	58	0	ARHGEF10	intronic	NA
GBM_A_T1--1	chr8:37720604	C	NA	47	0	47	37.404	3.998	0	0	0	45	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr8:37720604	C	T	16	0.188	13	38.462	3.099	3	36.000	2.646	13	3	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr8:37720604	C	NA	33	0	33	38.061	2.738	0	0	0	33	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr8:37720604	C	NA	39	0	39	37.103	2.683	0	0	0	39	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr8:37720604	C	NA	32	0	32	38.125	2.915	0	0	0	31	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr8:37720604	C	NA	65	0	65	36.262	4.442	0	0	0	61	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr8:37720604	C	NA	65	0	64	37.000	3.271	0	0	0	63	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr8:37720604	C	NA	55	0	55	36.582	4.302	0	0	0	52	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr8:37720604	C	NA	82	0	82	35.634	5.734	0	0	0	76	0	RAB11FIP1	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr8:69129903	G	A	78	0.282	56	38.000	2.860	22	38.364	2.665	56	22	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr8:69129903	G	A	27	0.296	19	37.421	3.097	8	39.875	2.100	19	8	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr8:69129903	G	A	76	0.053	72	37.444	4.169	4	38.750	3.304	68	4	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr8:69129903	G	A	79	0.051	75	38.347	3.875	4	35.500	5.802	71	4	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr8:69129903	G	A	56	0.179	46	36.522	4.584	10	36.900	4.012	41	9	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr8:69129903	G	A	76	0.224	59	36.237	4.500	17	37.235	3.231	55	17	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr8:69129903	G	A	66	0.424	37	36.351	4.650	28	36.893	4.003	34	25	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr8:69129903	G	A	68	0.250	51	37.000	4.035	17	37.765	2.513	48	17	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr8:69129903	G	NA	91	0	91	36.725	4.985	0	0	0	86	0	PREX2	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr8:7622689	G	T	35	0.029	34	36.353	3.609	1	32.000	0.000	33	1	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--2	chr8:7622689	G	NA	14	0	14	37.000	3.442	0	0	0	14	0	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--3	chr8:7622689	G	NA	25	0	25	36.520	3.216	0	0	0	25	0	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--4	chr8:7622689	G	T	26	0.077	24	36.583	2.781	2	34.000	1.414	24	2	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--5	chr8:7622689	G	NA	20	0	20	35.300	3.450	0	0	0	18	0	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--6	chr8:7622689	G	T	37	0.189	30	36.867	3.181	7	29.857	5.242	30	4	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--7	chr8:7622689	G	T	41	0.171	34	34.971	5.408	7	34.571	3.599	30	6	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--8	chr8:7622689	G	T	42	0.048	40	34.350	6.659	2	35.000	0.000	36	2	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--GL	chr8:7622689	G	NA	68	0	68	35.250	5.250	0	0	0	63	0	FAM90A7P(dist=190769),FAM90A10P(dist=4417)	intergenic	NA
GBM_A_T1--1	chr8:82715456	C	NA	70	0	70	36.986	2.990	0	0	0	69	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--2	chr8:82715456	C	A	21	0.190	17	37.412	2.002	4	39.750	1.893	17	4	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--3	chr8:82715456	C	NA	56	0	56	37.054	3.193	0	0	0	55	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--4	chr8:82715456	C	NA	56	0	56	36.946	3.060	0	0	0	55	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--5	chr8:82715456	C	NA	57	0	56	37.464	2.486	0	0	0	56	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--6	chr8:82715456	C	NA	78	0	78	35.667	4.245	0	0	0	73	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--7	chr8:82715456	C	NA	67	0	67	35.776	4.545	0	0	0	60	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--8	chr8:82715456	C	NA	72	0	72	35.153	5.777	0	0	0	66	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--GL	chr8:82715456	C	NA	70	0	70	36.114	4.282	0	0	0	66	0	SNX16	exonic	nonsynonymous_SNV
GBM_A_T1--1	chr8:98817560	T	G	23	0.174	19	37.737	3.478	4	36.750	2.363	18	4	LAPTM4B	intronic	NA
GBM_A_T1--2	chr8:98817560	T	NA	10	0	10	39.600	2.171	0	0	0	10	0	LAPTM4B	intronic	NA
GBM_A_T1--3	chr8:98817560	T	NA	19	0	19	38.526	2.342	0	0	0	19	0	LAPTM4B	intronic	NA
GBM_A_T1--4	chr8:98817560	T	NA	35	0	35	37.057	3.933	0	0	0	34	0	LAPTM4B	intronic	NA
GBM_A_T1--5	chr8:98817560	T	NA	26	0	26	36.615	5.514	0	0	0	24	0	LAPTM4B	intronic	NA
GBM_A_T1--6	chr8:98817560	T	G	35	0.086	32	36.656	4.896	3	29.333	4.726	30	2	LAPTM4B	intronic	NA
GBM_A_T1--7	chr8:98817560	T	G	42	0.071	39	37.487	2.999	3	28.000	17.321	39	2	LAPTM4B	intronic	NA
GBM_A_T1--8	chr8:98817560	T	G	31	0.097	28	37.071	5.747	3	39.000	2.000	26	3	LAPTM4B	intronic	NA
GBM_A_T1--GL	chr8:98817560	T	NA	63	0	63	37.302	3.762	0	0	0	60	0	LAPTM4B	intronic	NA
GBM_A_T1--1	chr8:99215278	T	C	24	0.208	19	37.895	5.830	5	39.000	1.414	18	5	NIPAL2	intronic	NA
GBM_A_T1--2	chr8:99215278	T	NA	12	0	12	39.250	1.815	0	0	0	12	0	NIPAL2	intronic	NA
GBM_A_T1--3	chr8:99215278	T	NA	30	0	30	38.300	3.706	0	0	0	29	0	NIPAL2	intronic	NA
GBM_A_T1--4	chr8:99215278	T	NA	26	0	26	38.731	2.308	0	0	0	26	0	NIPAL2	intronic	NA
GBM_A_T1--5	chr8:99215278	T	NA	21	0	21	38.667	2.556	0	0	0	21	0	NIPAL2	intronic	NA
GBM_A_T1--6	chr8:99215278	T	NA	42	0	42	37.214	3.310	0	0	0	41	0	NIPAL2	intronic	NA
GBM_A_T1--7	chr8:99215278	T	NA	27	0	27	34.741	6.267	0	0	0	22	0	NIPAL2	intronic	NA
GBM_A_T1--8	chr8:99215278	T	NA	43	0	43	37.698	3.012	0	0	0	43	0	NIPAL2	intronic	NA
GBM_A_T1--GL	chr8:99215278	T	NA	62	0	62	37.419	3.537	0	0	0	60	0	NIPAL2	intronic	NA
GBM_A_T1--1	chr9:115952863	A	NA	55	0	55	37.727	3.520	0	0	0	53	0	FKBP15	intronic	NA
GBM_A_T1--2	chr9:115952863	A	T	21	0.190	17	38.000	2.398	4	37.750	2.217	17	4	FKBP15	intronic	NA
GBM_A_T1--3	chr9:115952863	A	NA	45	0	45	37.778	3.240	0	0	0	44	0	FKBP15	intronic	NA
GBM_A_T1--4	chr9:115952863	A	NA	50	0	50	37.680	3.304	0	0	0	50	0	FKBP15	intronic	NA
GBM_A_T1--5	chr9:115952863	A	NA	41	0	40	37.725	3.942	0	0	0	38	0	FKBP15	intronic	NA
GBM_A_T1--6	chr9:115952863	A	NA	74	0	74	36.176	4.633	0	0	0	67	0	FKBP15	intronic	NA
GBM_A_T1--7	chr9:115952863	A	NA	55	0	55	36.309	4.434	0	0	0	50	0	FKBP15	intronic	NA
GBM_A_T1--8	chr9:115952863	A	NA	64	0	64	37.719	3.010	0	0	0	64	0	FKBP15	intronic	NA
GBM_A_T1--GL	chr9:115952863	A	NA	85	0	85	37.153	3.514	0	0	0	83	0	FKBP15	intronic	NA
GBM_A_T1--1	chr9:125895248	C	NA	25	0	25	34.080	7.170	0	0	0	23	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--2	chr9:125895248	C	NA	13	0	13	36.538	3.256	0	0	0	13	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--3	chr9:125895248	C	NA	17	0	17	37.176	3.358	0	0	0	16	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--4	chr9:125895248	C	NA	22	0	22	36.364	3.812	0	0	0	21	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--5	chr9:125895248	C	A	15	0.200	12	37.917	3.232	3	39.000	2.646	12	3	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--6	chr9:125895248	C	NA	30	0	30	36.233	3.588	0	0	0	29	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--7	chr9:125895248	C	NA	18	0	18	37.056	3.134	0	0	0	18	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--8	chr9:125895248	C	NA	35	0	35	35.314	4.213	0	0	0	31	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--GL	chr9:125895248	C	NA	33	0	33	35.273	4.002	0	0	0	30	0	STRBP(NM_001171137:exon18:c.1732-1G>T,NM_018387:exon18:c.1774-1G>T)	splicing	NA
GBM_A_T1--1	chr9:127237806	G	NA	17	0	17	36.059	2.487	0	0	0	17	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--2	chr9:127237806	G	NA	12	0	12	35.583	2.503	0	0	0	12	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--3	chr9:127237806	G	A	15	0.200	12	36.833	3.099	3	35.000	0.000	12	3	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--4	chr9:127237806	G	NA	17	0	17	35.765	3.153	0	0	0	17	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--5	chr9:127237806	G	NA	12	0	12	34.417	8.251	0	0	0	11	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--6	chr9:127237806	G	NA	17	0	17	35.353	3.239	0	0	0	16	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--7	chr9:127237806	G	NA	19	0	19	34.053	5.126	0	0	0	16	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--8	chr9:127237806	G	NA	16	0	16	34.500	3.795	0	0	0	15	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--GL	chr9:127237806	G	NA	35	0	35	34.486	4.280	0	0	0	33	0	PSMB7(dist=60054),NR5A1(dist=5709)	intergenic	NA
GBM_A_T1--1	chr9:137646268	C	NA	19	0	19	37.526	3.702	0	0	0	18	0	COL5A1	intronic	NA
GBM_A_T1--2	chr9:137646268	C	A	13	0.231	10	34.400	2.503	3	39.000	3.464	10	3	COL5A1	intronic	NA
GBM_A_T1--3	chr9:137646268	C	NA	20	0	20	37.050	2.585	0	0	0	20	0	COL5A1	intronic	NA
GBM_A_T1--4	chr9:137646268	C	NA	20	0	20	36.200	2.931	0	0	0	20	0	COL5A1	intronic	NA
GBM_A_T1--5	chr9:137646268	C	NA	16	0	16	37.062	2.435	0	0	0	16	0	COL5A1	intronic	NA
GBM_A_T1--6	chr9:137646268	C	NA	21	0	21	33.905	8.111	0	0	0	18	0	COL5A1	intronic	NA
GBM_A_T1--7	chr9:137646268	C	NA	27	0	27	34.704	7.559	0	0	0	23	0	COL5A1	intronic	NA
GBM_A_T1--8	chr9:137646268	C	NA	21	0	21	35.381	5.277	0	0	0	19	0	COL5A1	intronic	NA
GBM_A_T1--GL	chr9:137646268	C	NA	66	0	65	35.923	3.902	0	0	0	60	0	COL5A1	intronic	NA
GBM_A_T1--1	chr9:138677147	C	NA	33	0	33	36.818	4.391	0	0	0	32	0	KCNT1	intronic	NA
GBM_A_T1--2	chr9:138677147	C	NA	16	0	16	36.438	4.195	0	0	0	15	0	KCNT1	intronic	NA
GBM_A_T1--3	chr9:138677147	C	NA	32	0	32	38.562	2.614	0	0	0	32	0	KCNT1	intronic	NA
GBM_A_T1--4	chr9:138677147	C	NA	20	0	19	36.526	4.221	0	0	0	18	0	KCNT1	intronic	NA
GBM_A_T1--5	chr9:138677147	C	A	15	0.200	12	37.583	3.605	3	35.667	5.859	12	2	KCNT1	intronic	NA
GBM_A_T1--6	chr9:138677147	C	NA	18	0	18	35.556	5.193	0	0	0	15	0	KCNT1	intronic	NA
GBM_A_T1--7	chr9:138677147	C	NA	35	0	35	35.686	6.173	0	0	0	32	0	KCNT1	intronic	NA
GBM_A_T1--8	chr9:138677147	C	NA	14	0	14	33.643	8.635	0	0	0	12	0	KCNT1	intronic	NA
GBM_A_T1--GL	chr9:138677147	C	NA	47	0	47	35.787	4.606	0	0	0	44	0	KCNT1	intronic	NA
GBM_A_T1--1	chr9:139317578	C	NA	26	0	26	35.154	3.461	0	0	0	24	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--2	chr9:139317578	C	NA	13	0	13	36.154	3.412	0	0	0	12	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--3	chr9:139317578	C	NA	24	0	24	33.375	6.710	0	0	0	20	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--4	chr9:139317578	C	A	36	0.028	35	35.000	3.181	1	32.000	0.000	34	1	PMPCA	exonic	synonymous_SNV
GBM_A_T1--5	chr9:139317578	C	NA	19	0	19	35.526	2.065	0	0	0	19	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--6	chr9:139317578	C	A	24	0.167	20	32.500	6.420	4	34.250	1.500	14	4	PMPCA	exonic	synonymous_SNV
GBM_A_T1--7	chr9:139317578	C	NA	35	0	35	35.229	2.556	0	0	0	34	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--8	chr9:139317578	C	NA	20	0	20	33.800	3.443	0	0	0	17	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--GL	chr9:139317578	C	NA	60	0	60	31.850	5.923	0	0	0	46	0	PMPCA	exonic	synonymous_SNV
GBM_A_T1--1	chr9:34622476	G	NA	19	0	19	37.421	2.987	0	0	0	19	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--2	chr9:34622476	G	A	12	0.333	8	38.000	4.036	4	37.250	3.304	8	4	ARID3C	exonic	synonymous_SNV
GBM_A_T1--3	chr9:34622476	G	NA	18	0	18	37.722	2.697	0	0	0	18	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--4	chr9:34622476	G	A	29	0.034	28	35.429	4.077	1	39.000	0.000	26	1	ARID3C	exonic	synonymous_SNV
GBM_A_T1--5	chr9:34622476	G	NA	25	0	25	38.000	2.828	0	0	0	25	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--6	chr9:34622476	G	NA	34	0	34	36.559	5.028	0	0	0	32	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--7	chr9:34622476	G	NA	24	0	24	36.917	2.717	0	0	0	24	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--8	chr9:34622476	G	NA	27	0	27	35.593	5.301	0	0	0	25	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--GL	chr9:34622476	G	NA	40	0	39	36.615	3.566	0	0	0	37	0	ARID3C	exonic	synonymous_SNV
GBM_A_T1--1	chr9:38453596	G	A	79	0.013	78	35.231	7.082	1	41.000	0.000	66	1	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--2	chr9:38453596	G	NA	35	0	35	35.400	6.227	0	0	0	28	0	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--3	chr9:38453596	G	NA	74	0	73	35.986	6.478	0	0	0	64	0	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--4	chr9:38453596	G	A	63	0.095	57	35.684	6.993	6	37.000	5.586	49	5	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--5	chr9:38453596	G	A	61	0.164	51	34.451	6.891	10	35.100	9.243	43	8	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--6	chr9:38453596	G	A	106	0.028	103	34.447	7.044	3	24.667	13.650	84	1	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--7	chr9:38453596	G	NA	100	0	100	35.870	6.351	0	0	0	88	0	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--8	chr9:38453596	G	A	119	0.008	117	34.889	7.663	1	31.000	0.000	98	1	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--GL	chr9:38453596	G	NA	151	0	151	35.556	5.962	0	0	0	128	0	IGFBPL1(dist=29152),FAM95C(dist=86968)	intergenic	NA
GBM_A_T1--1	chr9:44111291	C	T	27	0.333	18	39.222	3.300	9	39.667	2.179	17	9	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--2	chr9:44111291	C	NA	10	0	10	39.800	2.098	0	0	0	10	0	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--3	chr9:44111291	C	T	41	0.098	37	38.351	4.178	4	38.750	2.630	36	4	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--4	chr9:44111291	C	T	32	0.031	31	38.935	2.816	1	37.000	0.000	31	1	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--5	chr9:44111291	C	T	24	0.083	22	38.273	3.369	2	33.500	2.121	22	2	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--6	chr9:44111291	C	T	37	0.162	31	37.903	2.773	6	36.167	2.787	31	6	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--7	chr9:44111291	C	T	20	0.100	18	37.889	2.968	2	36.000	2.828	18	2	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--8	chr9:44111291	C	T	37	0.243	28	36.643	6.390	9	38.111	4.567	26	8	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--GL	chr9:44111291	C	NA	55	0	55	36.400	7.159	0	0	0	48	0	CNTNAP3B(dist=188818),LINC01189(dist=276096)	intergenic	NA
GBM_A_T1--1	chr9:66472207	A	NA	19	0	19	38.158	2.968	0	0	0	19	0	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--2	chr9:66472207	A	G	10	0.100	9	37.667	4.093	1	39.000	0.000	9	1	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--3	chr9:66472207	A	G	21	0.190	17	39.588	1.906	4	40.500	1.000	17	4	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--4	chr9:66472207	A	NA	24	0	24	37.708	3.557	0	0	0	23	0	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--5	chr9:66472207	A	G	16	0.250	12	38.583	3.175	4	38.750	3.304	12	4	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--6	chr9:66472207	A	G	26	0.077	24	37.208	3.526	2	40.500	0.707	23	2	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--7	chr9:66472207	A	G	29	0.034	28	35.929	7.338	1	38.000	0.000	26	1	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--8	chr9:66472207	A	G	32	0.031	31	36.032	5.474	1	34.000	0.000	27	1	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--GL	chr9:66472207	A	NA	58	0	57	37.088	4.900	0	0	0	55	0	SPATA31A5(dist=962597),PTGER4P2-CDK2AP2P2(dist=22062)	intergenic	NA
GBM_A_T1--1	chr9:68417834	C	T	32	0.094	29	39.000	2.360	3	37.333	1.155	29	3	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--2	chr9:68417834	C	NA	10	0	10	40.100	1.101	0	0	0	10	0	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--3	chr9:68417834	C	T	27	0.111	24	39.458	1.744	3	39.000	2.000	24	3	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--4	chr9:68417834	C	T	40	0.150	34	38.912	2.610	6	40.667	0.516	34	6	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--5	chr9:68417834	C	T	28	0.107	25	38.000	6.813	3	39.333	1.528	24	3	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--6	chr9:68417834	C	T	20	0.050	19	36.053	7.670	1	39.000	0.000	17	1	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--7	chr9:68417834	C	T	36	0.222	28	38.321	3.139	8	40.000	1.604	27	8	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--8	chr9:68417834	C	T	24	0.125	21	38.143	2.869	3	33.333	8.327	20	2	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--GL	chr9:68417834	C	NA	59	0	59	38.814	4.509	0	0	0	58	0	ANKRD20A3(dist=447541),LOC642236(dist=9949)	intergenic	NA
GBM_A_T1--1	chrY:28817296	G	NA	20	0	20	37.250	2.593	0	0	0	20	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--2	chrY:28817296	G	NA	21	0	21	36.667	3.877	0	0	0	21	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--3	chrY:28817296	G	NA	29	0	29	35.621	5.321	0	0	0	26	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--4	chrY:28817296	G	C	24	0.167	20	36.650	2.621	4	35.500	1.000	20	4	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--5	chrY:28817296	G	NA	38	0	37	35.811	4.502	0	0	0	35	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--6	chrY:28817296	G	NA	20	0	20	33.800	6.101	0	0	0	18	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--7	chrY:28817296	G	NA	25	0	25	35.440	4.042	0	0	0	24	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--8	chrY:28817296	G	NA	20	0	20	37.250	2.900	0	0	0	20	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T1--GL	chrY:28817296	G	NA	96	0	96	35.667	3.819	0	0	0	90	0	TTTY3B(dist=937761),NONE(dist=NONE)	intergenic	NA
GBM_A_T2--1	chr10:104122287	C	A	28	0.036	27	37.556	2.806	1	40.000	0.000	27	1	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr10:104122287	C	NA	32	0	32	37.875	3.526	0	0	0	31	0	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr10:104122287	C	NA	15	0	15	38.133	2.066	0	0	0	15	0	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr10:104122287	C	A	29	0.034	28	38.321	2.091	1	40.000	0.000	28	1	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr10:104122287	C	A	13	0.231	10	36.800	4.104	3	35.667	7.506	9	2	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr10:104122287	C	NA	37	0	37	37.432	3.540	0	0	0	36	0	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr10:104122287	C	NA	46	0	46	36.630	5.326	0	0	0	45	0	GBF1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr10:127491506	C	A	27	0.037	26	36.192	3.311	1	33.000	0.000	25	1	UROS	intronic	NA
GBM_A_T2--2	chr10:127491506	C	NA	30	0	30	36.533	6.208	0	0	0	29	0	UROS	intronic	NA
GBM_A_T2--3	chr10:127491506	C	NA	22	0	22	37.136	3.642	0	0	0	21	0	UROS	intronic	NA
GBM_A_T2--4	chr10:127491506	C	NA	27	0	27	37.185	2.202	0	0	0	27	0	UROS	intronic	NA
GBM_A_T2--5	chr10:127491506	C	A	13	0.231	10	36.800	2.348	3	36.667	3.512	10	3	UROS	intronic	NA
GBM_A_T2--6	chr10:127491506	C	NA	27	0	27	36.296	3.561	0	0	0	25	0	UROS	intronic	NA
GBM_A_T2--GL	chr10:127491506	C	NA	46	0	46	37.304	2.731	0	0	0	45	0	UROS	intronic	NA
GBM_A_T2--1	chr10:129906063	A	NA	42	0	42	37.905	4.172	0	0	0	41	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--2	chr10:129906063	A	NA	81	0	81	37.506	2.665	0	0	0	80	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--3	chr10:129906063	A	NA	52	0	52	37.577	4.118	0	0	0	50	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--4	chr10:129906063	A	NA	61	0	60	37.733	2.596	0	0	0	59	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--5	chr10:129906063	A	T	23	0.174	19	36.947	4.048	4	36.000	2.000	18	4	MKI67	exonic	synonymous_SNV
GBM_A_T2--6	chr10:129906063	A	NA	52	0	52	37.962	2.417	0	0	0	52	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--GL	chr10:129906063	A	NA	129	0	128	37.672	4.032	0	0	0	124	0	MKI67	exonic	synonymous_SNV
GBM_A_T2--1	chr10:30638207	C	NA	35	0	35	35.057	8.509	0	0	0	32	0	MTPAP	UTR5	NA
GBM_A_T2--2	chr10:30638207	C	A	54	0.278	39	36.179	4.898	15	35.133	2.066	36	15	MTPAP	UTR5	NA
GBM_A_T2--3	chr10:30638207	C	NA	45	0	45	36.133	4.336	0	0	0	42	0	MTPAP	UTR5	NA
GBM_A_T2--4	chr10:30638207	C	A	41	0.366	26	36.038	6.447	15	34.867	2.066	25	15	MTPAP	UTR5	NA
GBM_A_T2--5	chr10:30638207	C	NA	20	0	20	35.300	7.540	0	0	0	18	0	MTPAP	UTR5	NA
GBM_A_T2--6	chr10:30638207	C	NA	17	0	16	35.750	6.202	0	0	0	15	0	MTPAP	UTR5	NA
GBM_A_T2--GL	chr10:30638207	C	NA	46	0	46	35.304	7.571	0	0	0	41	0	MTPAP	UTR5	NA
GBM_A_T2--1	chr10:30638208	T	NA	35	0	35	35.571	6.792	0	0	0	32	0	MTPAP	UTR5	NA
GBM_A_T2--2	chr10:30638208	T	A	66	0.409	39	35.974	4.944	27	35.222	2.025	36	27	MTPAP	UTR5	NA
GBM_A_T2--3	chr10:30638208	T	NA	45	0	45	36.333	3.418	0	0	0	43	0	MTPAP	UTR5	NA
GBM_A_T2--4	chr10:30638208	T	A	48	0.458	26	35.000	8.727	22	35.636	2.574	24	21	MTPAP	UTR5	NA
GBM_A_T2--5	chr10:30638208	T	NA	20	0	20	35.600	5.679	0	0	0	18	0	MTPAP	UTR5	NA
GBM_A_T2--6	chr10:30638208	T	NA	22	0	16	33.688	9.850	0	0	0	13	0	MTPAP	UTR5	NA
GBM_A_T2--GL	chr10:30638208	T	NA	46	0	46	35.174	7.663	0	0	0	40	0	MTPAP	UTR5	NA
GBM_A_T2--1	chr10:50013424	C	NA	57	0	57	36.719	2.981	0	0	0	56	0	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr10:50013424	C	NA	75	0	75	36.840	3.983	0	0	0	73	0	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr10:50013424	C	NA	62	0	62	36.419	3.297	0	0	0	60	0	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr10:50013424	C	A	59	0.017	58	36.948	3.052	1	37.000	0.000	56	1	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr10:50013424	C	A	22	0.182	18	37.500	3.502	4	37.000	0.000	17	4	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr10:50013424	C	NA	51	0	51	36.392	4.313	0	0	0	46	0	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr10:50013424	C	NA	78	0	78	37.115	3.365	0	0	0	73	0	WDFY4	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr10:5043938	C	NA	49	0	49	37.388	3.365	0	0	0	48	0	AKR1C2	intronic	NA
GBM_A_T2--2	chr10:5043938	C	T	75	0.013	74	36.770	4.244	1	37.000	0.000	71	1	AKR1C2	intronic	NA
GBM_A_T2--3	chr10:5043938	C	NA	49	0	49	37.469	3.305	0	0	0	48	0	AKR1C2	intronic	NA
GBM_A_T2--4	chr10:5043938	C	NA	51	0	51	37.686	3.997	0	0	0	50	0	AKR1C2	intronic	NA
GBM_A_T2--5	chr10:5043938	C	T	13	0.231	10	37.800	2.251	3	33.667	5.774	10	2	AKR1C2	intronic	NA
GBM_A_T2--6	chr10:5043938	C	T	43	0.047	41	37.122	4.136	2	37.000	0.000	38	2	AKR1C2	intronic	NA
GBM_A_T2--GL	chr10:5043938	C	NA	121	0	121	37.537	3.636	0	0	0	118	0	AKR1C2	intronic	NA
GBM_A_T2--1	chr10:5684544	T	NA	44	0	44	35.432	4.658	0	0	0	40	0	ASB13	intronic	NA
GBM_A_T2--2	chr10:5684544	T	A	32	0.219	25	36.080	3.135	7	32.714	2.928	24	6	ASB13	intronic	NA
GBM_A_T2--3	chr10:5684544	T	NA	27	0	27	33.889	7.132	0	0	0	23	0	ASB13	intronic	NA
GBM_A_T2--4	chr10:5684544	T	A	16	0.125	14	32.643	8.670	2	35.000	2.828	11	2	ASB13	intronic	NA
GBM_A_T2--5	chr10:5684544	T	A	20	0.050	19	36.105	3.799	1	40.000	0.000	18	1	ASB13	intronic	NA
GBM_A_T2--6	chr10:5684544	T	NA	17	0	17	35.412	3.792	0	0	0	16	0	ASB13	intronic	NA
GBM_A_T2--GL	chr10:5684544	T	NA	33	0	33	36.333	2.496	0	0	0	33	0	ASB13	intronic	NA
GBM_A_T2--1	chr10:72536157	C	A	23	0.174	19	35.158	7.441	4	37.750	1.500	18	4	TBATA	intronic	NA
GBM_A_T2--2	chr10:72536157	C	A	37	0.027	36	34.667	5.652	1	37.000	0.000	33	1	TBATA	intronic	NA
GBM_A_T2--3	chr10:72536157	C	NA	24	0	24	36.125	2.864	0	0	0	23	0	TBATA	intronic	NA
GBM_A_T2--4	chr10:72536157	C	NA	41	0	41	33.829	5.848	0	0	0	34	0	TBATA	intronic	NA
GBM_A_T2--5	chr10:72536157	C	NA	21	0	21	36.286	3.273	0	0	0	20	0	TBATA	intronic	NA
GBM_A_T2--6	chr10:72536157	C	NA	37	0	37	36.324	2.839	0	0	0	36	0	TBATA	intronic	NA
GBM_A_T2--GL	chr10:72536157	C	NA	62	0	62	35.177	3.371	0	0	0	57	0	TBATA	intronic	NA
GBM_A_T2--1	chr11:120852962	G	A	48	0.167	40	37.275	2.819	8	38.750	2.550	40	8	GRIK4	intronic	NA
GBM_A_T2--2	chr11:120852962	G	A	87	0.276	63	37.778	3.118	24	37.292	3.873	62	23	GRIK4	intronic	NA
GBM_A_T2--3	chr11:120852962	G	A	49	0.265	36	37.194	2.638	13	37.231	2.774	36	13	GRIK4	intronic	NA
GBM_A_T2--4	chr11:120852962	G	A	67	0.373	42	38.214	2.066	25	38.600	2.160	42	25	GRIK4	intronic	NA
GBM_A_T2--5	chr11:120852962	G	A	19	0.526	9	37.111	2.713	10	38.400	2.366	9	10	GRIK4	intronic	NA
GBM_A_T2--6	chr11:120852962	G	A	63	0.429	36	37.750	2.557	27	38.593	2.117	36	27	GRIK4	intronic	NA
GBM_A_T2--GL	chr11:120852962	G	NA	64	0	64	38.234	2.461	0	0	0	63	0	GRIK4	intronic	NA
GBM_A_T2--1	chr11:123847819	C	T	42	0.071	39	36.282	5.708	3	38.000	1.732	36	3	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr11:123847819	C	T	75	0.267	55	37.273	2.704	20	37.800	2.191	54	20	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr11:123847819	C	T	53	0.226	41	36.707	3.537	12	37.417	1.929	39	12	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr11:123847819	C	T	96	0.438	54	37.537	2.321	42	38.071	2.041	53	42	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr11:123847819	C	T	24	0.208	19	37.632	2.499	5	34.000	4.899	19	4	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr11:123847819	C	T	57	0.474	30	37.100	4.671	27	37.889	3.017	28	26	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr11:123847819	C	NA	96	0	96	36.979	3.671	0	0	0	93	0	OR10S1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr11:129746654	C	NA	27	0	27	34.074	5.574	0	0	0	23	0	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr11:129746654	C	A	31	0.032	30	36.200	4.286	1	33.000	0.000	28	1	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr11:129746654	C	NA	20	0	20	36.650	3.167	0	0	0	19	0	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr11:129746654	C	A	26	0.154	22	34.818	4.328	4	35.000	2.309	19	4	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr11:129746654	C	NA	12	0	12	35.333	3.676	0	0	0	11	0	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr11:129746654	C	NA	33	0	33	35.394	3.691	0	0	0	31	0	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr11:129746654	C	NA	43	0	43	35.000	4.435	0	0	0	37	0	NFRKB	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr11:17414459	C	NA	18	0	18	38.222	2.365	0	0	0	18	0	ABCC8	UTR3	NA
GBM_A_T2--2	chr11:17414459	C	NA	55	0	55	37.945	2.542	0	0	0	54	0	ABCC8	UTR3	NA
GBM_A_T2--3	chr11:17414459	C	NA	22	0	22	37.682	3.242	0	0	0	21	0	ABCC8	UTR3	NA
GBM_A_T2--4	chr11:17414459	C	NA	65	0	65	37.662	2.314	0	0	0	64	0	ABCC8	UTR3	NA
GBM_A_T2--5	chr11:17414459	C	T	18	0.167	15	37.933	3.369	3	38.000	1.732	14	3	ABCC8	UTR3	NA
GBM_A_T2--6	chr11:17414459	C	NA	54	0	54	38.130	1.791	0	0	0	54	0	ABCC8	UTR3	NA
GBM_A_T2--GL	chr11:17414459	C	NA	76	0	76	37.526	3.740	0	0	0	73	0	ABCC8	UTR3	NA
GBM_A_T2--1	chr1:14096785	C	NA	49	0	49	37.776	2.494	0	0	0	48	0	PRDM2	intronic	NA
GBM_A_T2--2	chr1:14096785	C	T	51	0.020	50	37.740	2.578	1	37.000	0.000	49	1	PRDM2	intronic	NA
GBM_A_T2--3	chr1:14096785	C	NA	33	0	33	36.333	3.550	0	0	0	31	0	PRDM2	intronic	NA
GBM_A_T2--4	chr1:14096785	C	T	42	0.667	14	36.786	4.627	28	38.107	2.061	12	28	PRDM2	intronic	NA
GBM_A_T2--5	chr1:14096785	C	T	17	0.294	12	38.083	2.712	5	38.800	1.643	12	5	PRDM2	intronic	NA
GBM_A_T2--6	chr1:14096785	C	T	49	0.367	31	37.935	2.394	18	37.611	1.787	31	18	PRDM2	intronic	NA
GBM_A_T2--GL	chr1:14096785	C	NA	45	0	45	37.622	2.167	0	0	0	45	0	PRDM2	intronic	NA
GBM_A_T2--1	chr11:47360068	C	NA	16	0	16	36.000	3.162	0	0	0	15	0	MYBPC3	intronic	NA
GBM_A_T2--2	chr11:47360068	C	NA	29	0	29	35.966	2.884	0	0	0	28	0	MYBPC3	intronic	NA
GBM_A_T2--3	chr11:47360068	C	NA	15	0	15	34.667	4.821	0	0	0	13	0	MYBPC3	intronic	NA
GBM_A_T2--4	chr11:47360068	C	NA	29	0	29	36.172	4.936	0	0	0	28	0	MYBPC3	intronic	NA
GBM_A_T2--5	chr11:47360068	C	A	10	0.300	7	36.143	3.185	3	32.333	5.033	7	2	MYBPC3	intronic	NA
GBM_A_T2--6	chr11:47360068	C	NA	24	0	24	35.625	2.163	0	0	0	24	0	MYBPC3	intronic	NA
GBM_A_T2--GL	chr11:47360068	C	NA	60	0	60	35.317	4.284	0	0	0	56	0	MYBPC3	intronic	NA
GBM_A_T2--1	chr11:5373646	T	C	29	0.034	28	38.857	2.068	1	37.000	0.000	28	1	OR51B6	exonic	synonymous_SNV
GBM_A_T2--2	chr11:5373646	T	NA	42	0	42	38.024	3.235	0	0	0	40	0	OR51B6	exonic	synonymous_SNV
GBM_A_T2--3	chr11:5373646	T	NA	27	0	27	38.593	2.117	0	0	0	27	0	OR51B6	exonic	synonymous_SNV
GBM_A_T2--4	chr11:5373646	T	NA	64	0	64	37.516	3.763	0	0	0	61	0	OR51B6	exonic	synonymous_SNV
GBM_A_T2--5	chr11:5373646	T	NA	24	0	24	37.500	2.934	0	0	0	24	0	OR51B6	exonic	synonymous_SNV
GBM_A_T2--6	chr11:5373646	T	C	34	0.147	29	38.621	2.638	5	37.400	2.881	28	5	OR51B6	exonic	synonymous_SNV
GBM_A_T2--GL	chr11:5373646	T	NA	70	0	70	38.014	2.210	0	0	0	70	0	OR51B6	exonic	synonymous_SNV
GBM_A_T2--1	chr11:57466264	C	A	15	0.200	12	37.917	2.151	3	38.000	1.732	12	3	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--2	chr11:57466264	C	NA	31	0	31	36.710	2.148	0	0	0	31	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--3	chr11:57466264	C	NA	17	0	17	36.235	4.562	0	0	0	16	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--4	chr11:57466264	C	NA	42	0	42	36.476	2.725	0	0	0	41	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--5	chr11:57466264	C	NA	12	0	12	36.500	3.873	0	0	0	11	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--6	chr11:57466264	C	NA	38	0	38	37.158	3.243	0	0	0	36	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--GL	chr11:57466264	C	NA	76	0	76	37.697	2.592	0	0	0	75	0	ZDHHC5	exonic	synonymous_SNV
GBM_A_T2--1	chr1:157545298	G	A	46	0.130	40	37.775	2.824	6	38.500	1.643	39	6	FCRL4	UTR3	NA
GBM_A_T2--2	chr1:157545298	G	A	113	0.265	83	37.783	2.768	30	37.800	2.172	81	30	FCRL4	UTR3	NA
GBM_A_T2--3	chr1:157545298	G	A	79	0.405	47	37.489	3.092	32	37.375	4.535	46	31	FCRL4	UTR3	NA
GBM_A_T2--4	chr1:157545298	G	A	119	0.378	74	38.135	2.691	45	38.556	1.890	72	45	FCRL4	UTR3	NA
GBM_A_T2--5	chr1:157545298	G	A	49	0.388	30	37.900	2.203	19	37.789	1.357	30	19	FCRL4	UTR3	NA
GBM_A_T2--6	chr1:157545298	G	A	101	0.386	62	38.097	4.558	39	38.308	2.117	61	39	FCRL4	UTR3	NA
GBM_A_T2--GL	chr1:157545298	G	NA	135	0	135	37.341	3.848	0	0	0	128	0	FCRL4	UTR3	NA
GBM_A_T2--1	chr11:59271906	C	NA	30	0	30	36.867	1.852	0	0	0	30	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--2	chr11:59271906	C	NA	43	0	43	36.442	2.529	0	0	0	42	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--3	chr11:59271906	C	NA	38	0	38	36.579	3.957	0	0	0	37	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--4	chr11:59271906	C	NA	76	0	76	35.645	5.403	0	0	0	71	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--5	chr11:59271906	C	A	15	0.200	12	36.167	2.588	3	38.000	1.732	12	3	OR4D11	exonic	synonymous_SNV
GBM_A_T2--6	chr11:59271906	C	NA	50	0	50	36.100	3.406	0	0	0	46	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--GL	chr11:59271906	C	NA	60	0	60	36.250	5.287	0	0	0	57	0	OR4D11	exonic	synonymous_SNV
GBM_A_T2--1	chr11:64820967	C	A	17	0.235	13	36.385	1.502	4	34.250	5.620	13	3	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr11:64820967	C	NA	25	0	25	36.200	3.342	0	0	0	23	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr11:64820967	C	NA	14	0	14	35.500	6.870	0	0	0	12	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr11:64820967	C	NA	40	0	40	34.600	5.624	0	0	0	36	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr11:64820967	C	NA	13	0	13	36.846	2.035	0	0	0	13	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr11:64820967	C	NA	37	0	37	36.568	2.599	0	0	0	36	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr11:64820967	C	NA	59	0	59	36.068	4.441	0	0	0	55	0	NAALADL1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:1688619	C	NA	24	0	24	36.333	2.444	0	0	0	24	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--2	chr1:1688619	C	NA	30	0	30	35.667	5.622	0	0	0	27	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--3	chr1:1688619	C	NA	17	0	17	36.353	8.070	0	0	0	16	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--4	chr1:1688619	C	NA	36	0	36	37.778	2.404	0	0	0	36	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--5	chr1:1688619	C	A	12	0.250	9	35.889	5.667	3	34.333	2.309	8	3	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--6	chr1:1688619	C	NA	37	0	37	36.270	5.167	0	0	0	34	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--GL	chr1:1688619	C	NA	47	0	47	36.936	3.339	0	0	0	46	0	NADK;NADK(NM_023018:exon5:c.393+1G>T,NM_001198995:exon3:c.297+1G>T,NM_001198993:exon5:c.393+1G>T)	exonic;splicing	nonsynonymous_SNV
GBM_A_T2--1	chr1:177249627	C	A	44	0.023	43	36.070	5.457	1	33.000	0.000	41	1	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr1:177249627	C	NA	62	0	62	37.145	3.308	0	0	0	59	0	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr1:177249627	C	NA	37	0	37	36.946	4.268	0	0	0	36	0	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr1:177249627	C	NA	41	0	41	37.220	2.716	0	0	0	40	0	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr1:177249627	C	A	25	0.160	21	37.238	3.375	4	36.000	6.164	20	3	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr1:177249627	C	NA	32	0	32	37.312	2.320	0	0	0	32	0	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr1:177249627	C	NA	51	0	51	36.549	5.243	0	0	0	48	0	BRINP2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:183096361	C	NA	22	0	22	36.409	4.102	0	0	0	20	0	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr1:183096361	C	A	52	0.019	51	37.608	4.050	1	40.000	0.000	50	1	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr1:183096361	C	NA	40	0	40	37.350	3.718	0	0	0	37	0	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr1:183096361	C	NA	45	0	45	37.711	3.217	0	0	0	44	0	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr1:183096361	C	A	18	0.167	15	37.200	2.569	3	39.000	1.732	15	3	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr1:183096361	C	NA	43	0	43	37.953	2.582	0	0	0	43	0	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr1:183096361	C	NA	64	0	64	37.141	4.155	0	0	0	61	0	LAMC1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:208204898	C	A	18	0.167	15	37.467	2.295	3	39.000	1.732	15	3	PLXNA2	intronic	NA
GBM_A_T2--2	chr1:208204898	C	NA	28	0	28	37.893	2.006	0	0	0	28	0	PLXNA2	intronic	NA
GBM_A_T2--3	chr1:208204898	C	NA	21	0	21	37.381	5.343	0	0	0	20	0	PLXNA2	intronic	NA
GBM_A_T2--4	chr1:208204898	C	NA	36	0	36	37.361	3.563	0	0	0	35	0	PLXNA2	intronic	NA
GBM_A_T2--5	chr1:208204898	C	NA	13	0	13	37.615	1.981	0	0	0	13	0	PLXNA2	intronic	NA
GBM_A_T2--6	chr1:208204898	C	NA	32	0	32	37.469	2.578	0	0	0	32	0	PLXNA2	intronic	NA
GBM_A_T2--GL	chr1:208204898	C	NA	43	0	43	37.744	2.527	0	0	0	43	0	PLXNA2	intronic	NA
GBM_A_T2--1	chr12:115120668	C	NA	44	0	44	36.864	2.792	0	0	0	43	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr12:115120668	C	NA	78	0	78	37.000	3.032	0	0	0	76	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr12:115120668	C	NA	56	0	56	36.589	2.808	0	0	0	54	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr12:115120668	C	NA	104	0	104	36.808	3.674	0	0	0	101	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr12:115120668	C	A	14	0.214	11	37.727	2.149	3	36.667	3.512	11	3	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr12:115120668	C	NA	83	0	83	37.349	2.366	0	0	0	82	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr12:115120668	C	NA	131	0	131	36.908	2.664	0	0	0	129	0	TBX3	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr12:121678275	A	NA	23	0	21	36.429	7.305	0	0	0	20	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr12:121678275	A	NA	38	0	34	35.824	8.167	0	0	0	30	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr12:121678275	A	NA	19	0	16	32.062	10.717	0	0	0	13	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr12:121678275	A	NA	37	0	34	36.824	3.713	0	0	0	31	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr12:121678275	A	C	16	0.375	10	38.100	2.331	6	21.500	11.131	10	2	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr12:121678275	A	NA	38	0	33	35.758	5.895	0	0	0	30	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr12:121678275	A	NA	35	0	34	36.735	4.474	0	0	0	33	0	CAMKK2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:214805939	C	A	35	0.086	32	38.250	2.016	3	38.000	1.732	32	3	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr1:214805939	C	NA	40	0	40	37.475	4.267	0	0	0	39	0	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr1:214805939	C	NA	26	0	26	36.038	6.702	0	0	0	25	0	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr1:214805939	C	NA	26	0	26	37.269	2.523	0	0	0	26	0	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr1:214805939	C	NA	18	0	18	36.667	5.871	0	0	0	17	0	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr1:214805939	C	A	18	0.167	15	37.400	2.667	3	39.000	1.732	15	3	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr1:214805939	C	NA	53	0	53	37.264	3.169	0	0	0	51	0	CENPF	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:21880489	C	NA	11	0	11	35.364	3.202	0	0	0	10	0	ALPL	UTR5	NA
GBM_A_T2--2	chr1:21880489	C	T	33	0.152	28	36.393	3.131	5	31.400	14.258	27	4	ALPL	UTR5	NA
GBM_A_T2--3	chr1:21880489	C	T	19	0.263	14	34.429	4.586	5	36.200	1.789	11	5	ALPL	UTR5	NA
GBM_A_T2--4	chr1:21880489	C	NA	33	0	32	37.031	2.148	0	0	0	32	0	ALPL	UTR5	NA
GBM_A_T2--5	chr1:21880489	C	NA	12	0	12	35.583	2.429	0	0	0	12	0	ALPL	UTR5	NA
GBM_A_T2--6	chr1:21880489	C	NA	30	0	30	36.733	3.638	0	0	0	29	0	ALPL	UTR5	NA
GBM_A_T2--GL	chr1:21880489	C	NA	48	0	48	35.604	4.984	0	0	0	43	0	ALPL	UTR5	NA
GBM_A_T2--1	chr1:22161434	C	NA	22	0	22	37.273	2.186	0	0	0	22	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--2	chr1:22161434	C	NA	29	0	29	35.000	7.455	0	0	0	26	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--3	chr1:22161434	C	A	12	0.250	9	35.889	5.667	3	37.000	0.000	8	3	HSPG2	exonic	synonymous_SNV
GBM_A_T2--4	chr1:22161434	C	NA	43	0	43	36.605	4.338	0	0	0	41	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--5	chr1:22161434	C	NA	14	0	14	37.500	2.378	0	0	0	14	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--6	chr1:22161434	C	NA	45	0	45	37.089	2.770	0	0	0	44	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--GL	chr1:22161434	C	NA	63	0	63	37.063	2.608	0	0	0	62	0	HSPG2	exonic	synonymous_SNV
GBM_A_T2--1	chr12:48082881	C	NA	80	0	80	37.125	2.528	0	0	0	80	0	RPAP3	intronic	NA
GBM_A_T2--2	chr12:48082881	C	G	108	0.009	107	37.037	3.499	1	37.000	0.000	104	1	RPAP3	intronic	NA
GBM_A_T2--3	chr12:48082881	C	NA	105	0	105	36.933	3.020	0	0	0	104	0	RPAP3	intronic	NA
GBM_A_T2--4	chr12:48082881	C	G	65	0.308	45	37.222	2.836	20	38.200	1.508	44	20	RPAP3	intronic	NA
GBM_A_T2--5	chr12:48082881	C	G	38	0.237	29	37.517	2.081	9	38.333	1.581	29	9	RPAP3	intronic	NA
GBM_A_T2--6	chr12:48082881	C	G	63	0.254	47	37.064	2.808	16	37.500	1.789	46	16	RPAP3	intronic	NA
GBM_A_T2--GL	chr12:48082881	C	NA	90	0	89	36.775	2.606	0	0	0	88	0	RPAP3	intronic	NA
GBM_A_T2--1	chr1:248138804	C	A	20	0.350	13	37.846	3.579	7	34.286	4.192	12	6	OR2L13	intronic	NA
GBM_A_T2--2	chr1:248138804	C	A	33	0.364	21	38.810	1.914	12	37.167	1.749	21	12	OR2L13	intronic	NA
GBM_A_T2--3	chr1:248138804	C	A	15	0.533	7	37.571	3.309	8	38.000	2.507	7	8	OR2L13	intronic	NA
GBM_A_T2--4	chr1:248138804	C	A	31	0.581	13	36.154	6.681	18	38.111	1.967	12	18	OR2L13	intronic	NA
GBM_A_T2--5	chr1:248138804	C	A	13	0.769	3	39.000	1.732	10	37.800	2.251	3	10	OR2L13	intronic	NA
GBM_A_T2--6	chr1:248138804	C	A	28	0.714	8	37.875	3.182	20	37.750	2.489	8	20	OR2L13	intronic	NA
GBM_A_T2--GL	chr1:248138804	C	NA	84	0	84	37.893	2.720	0	0	0	82	0	OR2L13	intronic	NA
GBM_A_T2--1	chr12:6342083	T	NA	62	0	62	37.242	3.039	0	0	0	61	0	CD9	intronic	NA
GBM_A_T2--2	chr12:6342083	T	NA	99	0	99	36.798	3.223	0	0	0	98	0	CD9	intronic	NA
GBM_A_T2--3	chr12:6342083	T	NA	76	0	76	36.526	3.022	0	0	0	73	0	CD9	intronic	NA
GBM_A_T2--4	chr12:6342083	T	NA	96	0	96	36.375	3.842	0	0	0	90	0	CD9	intronic	NA
GBM_A_T2--5	chr12:6342083	T	G	23	0.174	19	34.684	7.265	4	36.000	2.000	17	4	CD9	intronic	NA
GBM_A_T2--6	chr12:6342083	T	NA	70	0	70	36.986	2.344	0	0	0	69	0	CD9	intronic	NA
GBM_A_T2--GL	chr12:6342083	T	NA	98	0	97	36.680	3.941	0	0	0	94	0	CD9	intronic	NA
GBM_A_T2--1	chr13:109793157	C	NA	24	0	24	33.833	4.613	0	0	0	19	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr13:109793157	C	NA	42	0	42	33.190	5.915	0	0	0	34	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr13:109793157	C	NA	45	0	45	35.667	3.849	0	0	0	41	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr13:109793157	C	NA	48	0	48	36.125	2.833	0	0	0	46	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr13:109793157	C	NA	15	0	15	34.267	6.713	0	0	0	12	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr13:109793157	C	A	25	0.160	21	34.381	5.979	4	35.000	2.309	17	4	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr13:109793157	C	NA	35	0	35	35.429	3.051	0	0	0	33	0	MYO16	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr13:110855838	T	C	32	0.062	30	32.767	6.694	2	35.000	2.828	25	2	COL4A1	intronic	NA
GBM_A_T2--2	chr13:110855838	T	C	44	0.205	35	33.257	6.016	9	37.556	2.242	28	9	COL4A1	intronic	NA
GBM_A_T2--3	chr13:110855838	T	NA	13	0	11	28.000	11.198	0	0	0	6	0	COL4A1	intronic	NA
GBM_A_T2--4	chr13:110855838	T	NA	68	0	67	33.836	6.386	0	0	0	58	0	COL4A1	intronic	NA
GBM_A_T2--5	chr13:110855838	T	NA	12	0	12	35.750	3.334	0	0	0	11	0	COL4A1	intronic	NA
GBM_A_T2--6	chr13:110855838	T	NA	50	0	50	35.340	4.241	0	0	0	48	0	COL4A1	intronic	NA
GBM_A_T2--GL	chr13:110855838	T	NA	75	0	75	34.680	5.163	0	0	0	68	0	COL4A1	intronic	NA
GBM_A_T2--1	chr1:31744241	C	NA	16	0	16	36.188	4.215	0	0	0	14	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr1:31744241	C	NA	21	0	21	37.952	2.765	0	0	0	21	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr1:31744241	C	NA	15	0	15	37.733	1.944	0	0	0	15	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr1:31744241	C	NA	36	0	36	37.194	4.132	0	0	0	35	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr1:31744241	C	NA	12	0	12	38.083	2.712	0	0	0	12	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr1:31744241	C	A	27	0.148	23	37.957	2.142	4	38.500	1.732	23	4	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr1:31744241	C	NA	37	0	37	36.622	3.968	0	0	0	34	0	SNRNP40	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr13:70713509	A	NA	68	0	68	36.765	4.125	0	0	0	64	0	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--2	chr13:70713509	A	G	72	0.028	70	36.886	5.697	2	36.500	4.950	64	2	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--3	chr13:70713509	A	NA	88	0	88	37.420	4.443	0	0	0	85	0	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--4	chr13:70713509	A	G	46	0.022	45	37.089	2.314	1	40.000	0.000	45	1	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--5	chr13:70713509	A	G	33	0.455	18	37.833	1.383	15	36.333	2.320	18	15	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--6	chr13:70713509	A	G	43	0.023	42	36.571	3.703	1	40.000	0.000	40	1	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--GL	chr13:70713509	A	NA	63	0	62	36.677	3.425	0	0	0	59	0	ATXN8OS	ncRNA_exonic	NA
GBM_A_T2--1	chr13:77718579	C	A	25	0.160	21	36.714	4.671	4	38.500	1.732	19	4	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--2	chr13:77718579	C	NA	34	0	34	38.265	1.990	0	0	0	34	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--3	chr13:77718579	C	NA	18	0	18	38.611	2.004	0	0	0	18	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--4	chr13:77718579	C	NA	19	0	19	37.842	2.243	0	0	0	19	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--5	chr13:77718579	C	NA	22	0	22	38.591	1.919	0	0	0	22	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--6	chr13:77718579	C	NA	21	0	21	38.429	1.535	0	0	0	21	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--GL	chr13:77718579	C	NA	44	0	44	37.432	4.066	0	0	0	43	0	MYCBP2(NM_015057:exon50:c.7303+1G>T)	splicing	NA
GBM_A_T2--1	chr13:78236389	G	A	28	0.143	24	38.125	2.419	4	36.000	6.164	24	3	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--2	chr13:78236389	G	A	60	0.067	55	37.291	3.207	4	36.750	2.872	53	4	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--3	chr13:78236389	G	A	28	0.143	24	38.583	1.886	4	37.750	1.500	24	4	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--4	chr13:78236389	G	A	49	0.061	46	36.891	4.175	3	37.000	0.000	42	3	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--5	chr13:78236389	G	A	23	0.304	16	37.812	3.526	7	37.286	2.360	15	7	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--6	chr13:78236389	G	A	46	0.043	44	37.432	2.519	2	36.500	4.950	44	2	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--GL	chr13:78236389	G	NA	88	0	87	37.287	3.471	0	0	0	83	0	SCEL(dist=16991),SLAIN1(dist=35600)	intergenic	NA
GBM_A_T2--1	chr14:24531783	C	NA	36	0	36	37.917	2.089	0	0	0	36	0	LRRC16B	intronic	NA
GBM_A_T2--2	chr14:24531783	C	A	67	0.030	65	36.677	3.804	2	37.000	0.000	61	2	LRRC16B	intronic	NA
GBM_A_T2--3	chr14:24531783	C	NA	54	0	54	37.593	2.270	0	0	0	54	0	LRRC16B	intronic	NA
GBM_A_T2--4	chr14:24531783	C	NA	89	0	89	36.798	3.650	0	0	0	86	0	LRRC16B	intronic	NA
GBM_A_T2--5	chr14:24531783	C	A	20	0.200	16	36.375	2.247	4	38.500	1.732	16	4	LRRC16B	intronic	NA
GBM_A_T2--6	chr14:24531783	C	NA	82	0	82	36.585	2.948	0	0	0	80	0	LRRC16B	intronic	NA
GBM_A_T2--GL	chr14:24531783	C	NA	115	0	115	36.635	3.659	0	0	0	111	0	LRRC16B	intronic	NA
GBM_A_T2--1	chr1:44070557	T	G	14	0.214	11	37.364	2.580	3	35.667	2.309	11	3	PTPRF	intronic	NA
GBM_A_T2--2	chr1:44070557	T	G	40	0.025	39	37.795	2.441	1	37.000	0.000	38	1	PTPRF	intronic	NA
GBM_A_T2--3	chr1:44070557	T	NA	17	0	17	37.588	2.238	0	0	0	17	0	PTPRF	intronic	NA
GBM_A_T2--4	chr1:44070557	T	NA	28	0	28	36.964	4.834	0	0	0	27	0	PTPRF	intronic	NA
GBM_A_T2--5	chr1:44070557	T	NA	12	0	12	36.750	2.598	0	0	0	12	0	PTPRF	intronic	NA
GBM_A_T2--6	chr1:44070557	T	G	38	0.079	35	36.943	2.531	3	33.667	5.774	35	2	PTPRF	intronic	NA
GBM_A_T2--GL	chr1:44070557	T	NA	54	0	54	36.407	4.831	0	0	0	52	0	PTPRF	intronic	NA
GBM_A_T2--1	chr1:45484793	C	A	11	0.273	8	37.500	3.071	3	38.000	1.732	8	3	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr1:45484793	C	NA	24	0	24	35.625	3.573	0	0	0	23	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr1:45484793	C	NA	14	0	14	34.214	6.600	0	0	0	12	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr1:45484793	C	NA	46	0	46	36.978	3.208	0	0	0	45	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr1:45484793	C	NA	10	0	10	37.700	2.830	0	0	0	10	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr1:45484793	C	NA	28	0	27	36.630	3.188	0	0	0	26	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr1:45484793	C	NA	73	0	73	36.877	3.073	0	0	0	71	0	ZSWIM5	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr14:73989050	C	NA	37	0	37	36.054	4.109	0	0	0	36	0	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr14:73989050	C	A	67	0.015	66	36.788	3.326	1	37.000	0.000	64	1	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr14:73989050	C	NA	32	0	32	37.281	1.871	0	0	0	32	0	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr14:73989050	C	NA	72	0	72	36.903	3.212	0	0	0	69	0	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr14:73989050	C	A	25	0.160	21	38.095	1.895	4	38.500	1.732	21	4	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr14:73989050	C	NA	64	0	64	37.688	2.174	0	0	0	64	0	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr14:73989050	C	NA	83	0	83	36.819	2.651	0	0	0	81	0	HEATR4	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:47504445	C	NA	34	0	34	37.971	2.139	0	0	0	34	0	CYP4X1	intronic	NA
GBM_A_T2--2	chr1:47504445	C	NA	59	0	59	37.458	3.191	0	0	0	58	0	CYP4X1	intronic	NA
GBM_A_T2--3	chr1:47504445	C	NA	36	0	36	37.917	3.475	0	0	0	35	0	CYP4X1	intronic	NA
GBM_A_T2--4	chr1:47504445	C	NA	32	0	32	38.000	2.383	0	0	0	32	0	CYP4X1	intronic	NA
GBM_A_T2--5	chr1:47504445	C	A	14	0.214	11	36.273	5.442	3	38.000	1.732	10	3	CYP4X1	intronic	NA
GBM_A_T2--6	chr1:47504445	C	NA	30	0	30	37.667	2.339	0	0	0	30	0	CYP4X1	intronic	NA
GBM_A_T2--GL	chr1:47504445	C	NA	35	0	35	38.829	1.963	0	0	0	35	0	CYP4X1	intronic	NA
GBM_A_T2--1	chr14:77872979	G	C	26	0.462	11	36.909	1.578	12	35.833	4.933	11	11	NOXRED1	intronic	NA
GBM_A_T2--2	chr14:77872979	G	NA	85	0	47	36.064	4.532	0	0	0	44	0	NOXRED1	intronic	NA
GBM_A_T2--3	chr14:77872979	G	C	35	0.314	22	36.955	2.278	11	37.091	2.427	22	11	NOXRED1	intronic	NA
GBM_A_T2--4	chr14:77872979	G	C	120	0.408	64	36.297	5.497	49	36.020	5.186	61	46	NOXRED1	intronic	NA
GBM_A_T2--5	chr14:77872979	G	C	23	0.478	12	36.500	4.758	11	38.182	2.822	11	11	NOXRED1	intronic	NA
GBM_A_T2--6	chr14:77872979	G	NA	83	0	40	36.200	3.784	0	0	0	38	0	NOXRED1	intronic	NA
GBM_A_T2--GL	chr14:77872979	G	NA	146	0	82	36.195	3.792	0	0	0	78	0	NOXRED1	intronic	NA
GBM_A_T2--1	chr15:42032333	C	NA	41	0	41	36.341	4.408	0	0	0	39	0	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:42032333	C	NA	58	0	58	36.310	2.921	0	0	0	57	0	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:42032333	C	NA	42	0	42	37.429	1.783	0	0	0	42	0	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:42032333	C	NA	49	0	49	37.000	4.987	0	0	0	48	0	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:42032333	C	A	20	0.200	16	37.000	2.366	4	36.750	2.872	16	4	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:42032333	C	A	44	0.023	43	36.372	4.304	1	37.000	0.000	41	1	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:42032333	C	NA	116	0	116	36.224	4.342	0	0	0	112	0	MGA	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr15:43712882	C	NA	13	0	13	34.846	3.579	0	0	0	12	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:43712882	C	NA	36	0	36	37.639	2.674	0	0	0	36	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:43712882	C	A	18	0.167	15	38.333	2.093	3	37.667	4.041	15	3	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:43712882	C	NA	35	0	35	37.543	2.343	0	0	0	35	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:43712882	C	NA	10	0	10	37.000	3.055	0	0	0	10	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:43712882	C	NA	13	0	13	37.923	1.441	0	0	0	13	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:43712882	C	NA	72	0	72	37.042	5.097	0	0	0	68	0	TP53BP1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr15:43815749	C	NA	45	0	45	36.267	3.078	0	0	0	43	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:43815749	C	NA	82	0	82	36.817	2.625	0	0	0	81	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:43815749	C	NA	40	0	40	36.900	2.706	0	0	0	39	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:43815749	C	NA	65	0	65	36.123	4.615	0	0	0	61	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:43815749	C	A	16	0.250	12	36.667	2.995	4	35.000	2.309	12	4	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:43815749	C	NA	69	0	69	36.928	2.409	0	0	0	68	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:43815749	C	NA	129	0	129	36.341	3.860	0	0	0	124	0	MAP1A	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr15:62169278	C	NA	26	0	26	37.269	2.523	0	0	0	26	0	VPS13C	intronic	NA
GBM_A_T2--2	chr15:62169278	C	NA	37	0	37	36.919	2.691	0	0	0	36	0	VPS13C	intronic	NA
GBM_A_T2--3	chr15:62169278	C	NA	38	0	38	37.105	3.447	0	0	0	36	0	VPS13C	intronic	NA
GBM_A_T2--4	chr15:62169278	C	NA	25	0	25	35.840	6.600	0	0	0	24	0	VPS13C	intronic	NA
GBM_A_T2--5	chr15:62169278	C	A	13	0.231	10	37.800	2.251	3	37.667	4.041	10	3	VPS13C	intronic	NA
GBM_A_T2--6	chr15:62169278	C	NA	28	0	28	37.143	3.064	0	0	0	27	0	VPS13C	intronic	NA
GBM_A_T2--GL	chr15:62169278	C	NA	41	0	41	38.098	2.059	0	0	0	41	0	VPS13C	intronic	NA
GBM_A_T2--1	chr15:63967108	C	NA	25	0	25	37.800	3.775	0	0	0	24	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:63967108	C	NA	40	0	40	37.500	2.038	0	0	0	40	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:63967108	C	NA	36	0	36	36.611	4.783	0	0	0	34	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:63967108	C	NA	52	0	52	37.519	2.570	0	0	0	51	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:63967108	C	A	13	0.231	10	37.200	1.932	3	33.333	6.506	10	2	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:63967108	C	NA	33	0	33	36.970	3.441	0	0	0	32	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:63967108	C	NA	73	0	73	35.918	4.924	0	0	0	67	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr15:63988339	C	NA	22	0	22	37.818	2.423	0	0	0	22	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:63988339	C	NA	33	0	33	36.364	6.383	0	0	0	31	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:63988339	C	NA	19	0	19	35.053	6.407	0	0	0	16	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:63988339	C	NA	47	0	47	38.085	2.403	0	0	0	47	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:63988339	C	A	12	0.250	9	35.778	5.911	3	35.667	2.309	8	3	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:63988339	C	NA	31	0	31	37.065	4.114	0	0	0	28	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:63988339	C	NA	98	0	98	37.408	3.744	0	0	0	92	0	HERC1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr15:78393721	C	NA	43	0	43	36.953	2.370	0	0	0	42	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr15:78393721	C	NA	49	0	49	36.796	2.273	0	0	0	49	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr15:78393721	C	A	22	0.182	18	36.722	2.697	4	38.500	1.732	18	4	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr15:78393721	C	NA	49	0	49	36.878	3.238	0	0	0	48	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr15:78393721	C	NA	27	0	27	36.259	4.752	0	0	0	26	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr15:78393721	C	NA	47	0	47	37.468	2.063	0	0	0	47	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr15:78393721	C	NA	81	0	81	36.469	2.702	0	0	0	79	0	SH2D7	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr16:15125632	C	NA	15	0	15	34.800	8.621	0	0	0	13	0	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--2	chr16:15125632	C	A	25	0.080	23	36.087	4.963	2	38.500	2.121	21	2	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--3	chr16:15125632	C	NA	21	0	21	35.905	3.404	0	0	0	20	0	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--4	chr16:15125632	C	NA	38	0	38	36.263	3.539	0	0	0	36	0	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--5	chr16:15125632	C	A	12	0.250	9	37.333	1.000	3	33.000	0.000	9	3	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--6	chr16:15125632	C	NA	35	0	35	36.000	5.179	0	0	0	31	0	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--GL	chr16:15125632	C	NA	46	0	46	35.500	6.135	0	0	0	42	0	PDXDC1	exonic	synonymous_SNV
GBM_A_T2--1	chr16:2816949	C	NA	31	0	31	36.774	3.461	0	0	0	30	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--2	chr16:2816949	C	NA	59	0	59	37.237	2.409	0	0	0	58	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--3	chr16:2816949	C	NA	29	0	29	36.966	2.745	0	0	0	28	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--4	chr16:2816949	C	NA	74	0	74	36.811	2.530	0	0	0	72	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--5	chr16:2816949	C	A	17	0.176	14	36.357	4.431	3	38.000	1.732	12	3	SRRM2	exonic	synonymous_SNV
GBM_A_T2--6	chr16:2816949	C	NA	72	0	72	37.042	2.509	0	0	0	71	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--GL	chr16:2816949	C	NA	104	0	104	36.452	3.525	0	0	0	101	0	SRRM2	exonic	synonymous_SNV
GBM_A_T2--1	chr16:30768503	T	A	29	0.034	28	37.321	2.790	1	33.000	0.000	27	1	PHKG2	UTR3	NA
GBM_A_T2--2	chr16:30768503	T	NA	37	0	37	37.243	4.186	0	0	0	36	0	PHKG2	UTR3	NA
GBM_A_T2--3	chr16:30768503	T	NA	22	0	22	36.955	2.278	0	0	0	22	0	PHKG2	UTR3	NA
GBM_A_T2--4	chr16:30768503	T	NA	38	0	38	36.921	3.131	0	0	0	36	0	PHKG2	UTR3	NA
GBM_A_T2--5	chr16:30768503	T	NA	12	0	12	36.750	2.598	0	0	0	12	0	PHKG2	UTR3	NA
GBM_A_T2--6	chr16:30768503	T	A	39	0.179	32	38.375	1.792	7	35.286	2.138	32	7	PHKG2	UTR3	NA
GBM_A_T2--GL	chr16:30768503	T	NA	75	0	75	36.880	3.385	0	0	0	73	0	PHKG2	UTR3	NA
GBM_A_T2--1	chr16:364502	C	NA	43	0	43	36.512	3.397	0	0	0	40	0	AXIN1	intronic	NA
GBM_A_T2--2	chr16:364502	C	NA	51	0	51	37.549	2.043	0	0	0	51	0	AXIN1	intronic	NA
GBM_A_T2--3	chr16:364502	C	NA	27	0	27	36.815	2.185	0	0	0	27	0	AXIN1	intronic	NA
GBM_A_T2--4	chr16:364502	C	NA	89	0	89	36.899	3.593	0	0	0	85	0	AXIN1	intronic	NA
GBM_A_T2--5	chr16:364502	C	A	13	0.231	10	37.500	2.121	3	38.000	1.732	10	3	AXIN1	intronic	NA
GBM_A_T2--6	chr16:364502	C	NA	62	0	62	37.468	1.744	0	0	0	62	0	AXIN1	intronic	NA
GBM_A_T2--GL	chr16:364502	C	NA	100	0	100	36.810	3.253	0	0	0	96	0	AXIN1	intronic	NA
GBM_A_T2--1	chr16:48130656	C	A	15	0.200	12	37.333	2.462	3	39.000	1.732	12	3	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--2	chr16:48130656	C	NA	49	0	49	37.490	5.112	0	0	0	48	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--3	chr16:48130656	C	NA	36	0	36	36.917	3.894	0	0	0	34	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--4	chr16:48130656	C	NA	67	0	67	37.567	2.909	0	0	0	66	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--5	chr16:48130656	C	NA	18	0	18	37.444	1.688	0	0	0	18	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--6	chr16:48130656	C	NA	44	0	44	37.364	2.488	0	0	0	44	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--GL	chr16:48130656	C	NA	72	0	72	37.625	3.018	0	0	0	70	0	ABCC12(NM_033226:exon23:c.3195+1G>T)	splicing	NA
GBM_A_T2--1	chr16:66614067	T	NA	27	0	27	36.444	3.501	0	0	0	25	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr16:66614067	T	NA	38	0	38	37.026	4.239	0	0	0	37	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr16:66614067	T	NA	20	0	20	37.800	2.191	0	0	0	20	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr16:66614067	T	NA	52	0	52	37.673	1.948	0	0	0	52	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr16:66614067	T	C	12	0.333	8	35.500	4.342	4	35.750	3.403	7	4	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr16:66614067	T	NA	53	0	53	37.340	3.642	0	0	0	50	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr16:66614067	T	NA	70	0	70	36.914	2.962	0	0	0	68	0	CMTM2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr16:66975656	C	NA	13	0	13	37.231	2.774	0	0	0	13	0	CES2	intronic	NA
GBM_A_T2--2	chr16:66975656	C	NA	32	0	32	35.125	4.982	0	0	0	29	0	CES2	intronic	NA
GBM_A_T2--3	chr16:66975656	C	A	17	0.176	14	38.214	2.119	3	36.667	3.512	14	3	CES2	intronic	NA
GBM_A_T2--4	chr16:66975656	C	NA	54	0	54	36.759	2.767	0	0	0	54	0	CES2	intronic	NA
GBM_A_T2--5	chr16:66975656	C	NA	11	0	11	36.818	2.228	0	0	0	11	0	CES2	intronic	NA
GBM_A_T2--6	chr16:66975656	C	NA	40	0	40	36.825	4.075	0	0	0	37	0	CES2	intronic	NA
GBM_A_T2--GL	chr16:66975656	C	NA	51	0	51	36.667	5.743	0	0	0	48	0	CES2	intronic	NA
GBM_A_T2--1	chr16:67576482	C	NA	23	0	23	37.130	2.052	0	0	0	23	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr16:67576482	C	NA	57	0	57	35.561	4.687	0	0	0	54	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr16:67576482	C	A	24	0.167	20	36.650	2.159	4	35.000	2.309	20	4	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr16:67576482	C	NA	115	0	115	36.678	2.940	0	0	0	111	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr16:67576482	C	NA	23	0	23	37.000	2.908	0	0	0	22	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr16:67576482	C	NA	75	0	75	37.107	2.618	0	0	0	73	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr16:67576482	C	NA	118	0	118	36.856	3.016	0	0	0	115	0	FAM65A	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr16:68055943	C	A	23	0.174	19	35.368	7.433	4	37.750	1.500	18	4	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr16:68055943	C	NA	44	0	44	37.795	2.520	0	0	0	44	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr16:68055943	C	NA	27	0	26	38.615	1.525	0	0	0	26	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr16:68055943	C	NA	91	0	91	37.593	2.860	0	0	0	90	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr16:68055943	C	NA	18	0	18	37.778	1.865	0	0	0	18	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr16:68055943	C	NA	50	0	50	36.960	4.347	0	0	0	48	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr16:68055943	C	NA	106	0	106	37.745	3.052	0	0	0	102	0	DDX28	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr16:813361	C	NA	12	0	12	37.333	2.462	0	0	0	12	0	MSLN	intronic	NA
GBM_A_T2--2	chr16:813361	C	NA	36	0	36	36.833	3.924	0	0	0	33	0	MSLN	intronic	NA
GBM_A_T2--3	chr16:813361	C	NA	15	0	15	35.867	3.502	0	0	0	14	0	MSLN	intronic	NA
GBM_A_T2--4	chr16:813361	C	NA	29	0	29	35.414	5.103	0	0	0	25	0	MSLN	intronic	NA
GBM_A_T2--5	chr16:813361	C	A	17	0.176	14	36.714	2.758	3	39.000	1.732	14	3	MSLN	intronic	NA
GBM_A_T2--6	chr16:813361	C	NA	30	0	30	36.867	3.569	0	0	0	29	0	MSLN	intronic	NA
GBM_A_T2--GL	chr16:813361	C	NA	35	0	35	36.800	2.847	0	0	0	34	0	MSLN	intronic	NA
GBM_A_T2--1	chr16:83994226	C	A	46	0.130	40	35.950	4.051	6	37.333	2.582	37	6	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr16:83994226	C	NA	56	0	56	34.161	7.380	0	0	0	48	0	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr16:83994226	C	A	39	0.051	37	36.243	3.244	2	35.000	2.828	35	2	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr16:83994226	C	NA	54	0	54	35.407	3.739	0	0	0	50	0	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr16:83994226	C	NA	26	0	26	34.654	6.882	0	0	0	23	0	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr16:83994226	C	A	56	0.018	55	35.273	3.822	1	37.000	0.000	50	1	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr16:83994226	C	NA	72	0	72	35.278	4.223	0	0	0	64	0	OSGIN1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr16:89299899	A	G	46	0.370	29	35.690	5.238	17	36.706	5.924	27	16	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--2	chr16:89299899	A	NA	93	0	56	36.589	3.068	0	0	0	54	0	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--3	chr16:89299899	A	G	42	0.476	22	35.909	5.089	20	35.700	7.801	19	18	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--4	chr16:89299899	A	NA	157	0	93	36.699	3.151	0	0	0	90	0	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--5	chr16:89299899	A	G	26	0.385	16	35.812	4.490	10	34.300	7.846	15	8	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--6	chr16:89299899	A	G	93	0.333	62	35.468	4.783	31	37.742	2.338	57	31	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--GL	chr16:89299899	A	NA	202	0	121	35.835	5.874	0	0	0	115	0	ZNF778(dist=3934),ANKRD11(dist=34130)	intergenic	NA
GBM_A_T2--1	chr17:10353805	G	A	52	0.192	42	37.048	3.800	10	35.200	5.453	39	9	MYH4	exonic	synonymous_SNV
GBM_A_T2--2	chr17:10353805	G	A	84	0.357	54	37.389	2.406	30	37.133	4.508	54	29	MYH4	exonic	synonymous_SNV
GBM_A_T2--3	chr17:10353805	G	A	46	0.457	25	37.000	2.646	21	37.476	2.015	25	21	MYH4	exonic	synonymous_SNV
GBM_A_T2--4	chr17:10353805	G	A	114	0.368	72	36.153	3.543	42	36.857	3.265	67	40	MYH4	exonic	synonymous_SNV
GBM_A_T2--5	chr17:10353805	G	A	33	0.515	16	38.125	1.500	17	37.529	2.577	16	17	MYH4	exonic	synonymous_SNV
GBM_A_T2--6	chr17:10353805	G	A	104	0.317	71	36.803	3.463	33	37.788	2.302	67	33	MYH4	exonic	synonymous_SNV
GBM_A_T2--GL	chr17:10353805	G	NA	125	0	125	37.224	3.569	0	0	0	124	0	MYH4	exonic	synonymous_SNV
GBM_A_T2--1	chr17:18154312	C	A	16	0.188	13	36.846	2.035	3	35.667	2.309	13	3	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:18154312	C	NA	15	0	15	35.667	3.331	0	0	0	14	0	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:18154312	C	A	18	0.111	16	36.938	4.434	2	33.000	0.000	15	2	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:18154312	C	NA	32	0	32	36.781	2.981	0	0	0	31	0	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:18154312	C	NA	14	0	14	33.643	9.353	0	0	0	12	0	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:18154312	C	NA	25	0	24	36.542	2.978	0	0	0	23	0	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:18154312	C	NA	50	0	50	36.840	2.402	0	0	0	50	0	FLII	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:35538088	C	A	26	0.154	22	36.455	3.291	4	37.000	0.000	21	4	ACACA	intronic	NA
GBM_A_T2--2	chr17:35538088	C	NA	55	0	55	37.309	2.814	0	0	0	54	0	ACACA	intronic	NA
GBM_A_T2--3	chr17:35538088	C	NA	35	0	35	37.343	2.980	0	0	0	34	0	ACACA	intronic	NA
GBM_A_T2--4	chr17:35538088	C	NA	67	0	67	37.045	4.617	0	0	0	64	0	ACACA	intronic	NA
GBM_A_T2--5	chr17:35538088	C	NA	23	0	23	37.783	2.373	0	0	0	23	0	ACACA	intronic	NA
GBM_A_T2--6	chr17:35538088	C	NA	46	0	46	37.913	1.953	0	0	0	46	0	ACACA	intronic	NA
GBM_A_T2--GL	chr17:35538088	C	NA	73	0	73	37.137	2.988	0	0	0	70	0	ACACA	intronic	NA
GBM_A_T2--1	chr17:4645768	C	NA	13	0	13	36.769	3.833	0	0	0	12	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:4645768	C	NA	29	0	29	36.897	3.051	0	0	0	28	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:4645768	C	A	14	0.214	11	33.909	9.648	3	35.667	2.309	10	3	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:4645768	C	NA	42	0	42	36.429	4.880	0	0	0	39	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:4645768	C	NA	11	0	11	37.727	2.149	0	0	0	11	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:4645768	C	NA	27	0	27	34.852	8.123	0	0	0	24	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:4645768	C	NA	51	0	51	35.333	6.383	0	0	0	48	0	ZMYND15	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:56343642	C	NA	33	0	33	38.212	2.571	0	0	0	33	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:56343642	C	NA	65	0	65	37.969	2.437	0	0	0	65	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:56343642	C	NA	38	0	38	37.658	2.850	0	0	0	37	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:56343642	C	NA	61	0	61	37.082	5.339	0	0	0	57	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:56343642	C	A	17	0.176	14	38.643	2.134	3	38.000	1.732	14	3	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:56343642	C	NA	48	0	48	37.625	2.623	0	0	0	48	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:56343642	C	NA	81	0	80	37.538	3.225	0	0	0	76	0	LPO	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:56434867	C	A	15	0.200	12	36.333	3.420	3	38.000	1.732	11	3	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:56434867	C	NA	58	0	58	37.121	2.464	0	0	0	57	0	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:56434867	C	NA	25	0	25	37.200	2.291	0	0	0	25	0	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:56434867	C	A	80	0.013	79	36.266	4.355	1	37.000	0.000	75	1	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:56434867	C	NA	12	0	12	36.250	2.137	0	0	0	12	0	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:56434867	C	NA	46	0	45	36.067	4.604	0	0	0	40	0	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:56434867	C	NA	80	0	80	36.850	3.569	0	0	0	78	0	RNF43	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:74288421	A	G	47	0.511	19	35.842	2.410	24	35.958	5.591	19	22	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:74288421	A	G	118	0.398	63	35.095	5.369	47	35.383	6.835	57	45	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:74288421	A	G	45	0.333	29	35.276	4.674	15	35.200	6.428	27	13	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:74288421	A	NA	141	0	66	35.121	4.606	0	0	0	60	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:74288421	A	NA	42	0	30	36.533	2.460	0	0	0	30	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:74288421	A	NA	109	0	53	35.208	4.422	0	0	0	49	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:74288421	A	NA	228	0	118	35.822	5.078	0	0	0	111	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:74288422	T	C	47	0.596	19	33.263	7.038	28	35.357	5.697	16	25	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:74288422	T	C	117	0.453	64	33.094	8.211	53	35.453	3.539	51	49	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:74288422	T	C	45	0.356	29	34.103	4.427	16	35.625	3.828	27	14	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:74288422	T	NA	141	0	66	33.682	6.694	0	0	0	56	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:74288422	T	NA	42	0	30	36.000	2.841	0	0	0	29	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:74288422	T	NA	108	0	52	33.788	5.744	0	0	0	44	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:74288422	T	NA	227	0	117	34.214	5.477	0	0	0	102	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:76113633	C	NA	33	0	33	35.333	5.458	0	0	0	28	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:76113633	C	NA	58	0	58	36.500	3.455	0	0	0	55	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:76113633	C	A	28	0.143	24	36.958	2.177	4	36.750	2.872	24	4	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:76113633	C	NA	82	0	82	35.744	4.624	0	0	0	75	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:76113633	C	NA	25	0	25	35.480	6.279	0	0	0	22	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:76113633	C	NA	58	0	56	35.000	5.695	0	0	0	44	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:76113633	C	NA	78	0	78	36.115	4.000	0	0	0	74	0	TMC6	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr17:80919054	C	NA	37	0	37	36.054	3.944	0	0	0	34	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr17:80919054	C	NA	47	0	47	35.213	4.070	0	0	0	43	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr17:80919054	C	NA	43	0	43	35.465	3.819	0	0	0	39	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr17:80919054	C	NA	45	0	45	34.689	4.819	0	0	0	40	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr17:80919054	C	A	13	0.231	10	36.400	2.633	3	38.000	1.732	10	3	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr17:80919054	C	NA	36	0	36	36.389	4.045	0	0	0	34	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr17:80919054	C	NA	58	0	58	34.655	5.717	0	0	0	51	0	B3GNTL1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr18:19996858	A	G	180	0.256	134	37.396	3.943	46	38.370	2.453	131	46	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr18:19996858	A	G	279	0.265	205	37.922	3.783	74	37.662	2.406	200	74	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr18:19996858	A	G	253	0.281	182	38.082	3.099	71	37.803	2.617	178	70	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr18:19996858	A	G	225	0.320	153	37.837	3.769	72	36.944	3.271	148	68	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr18:19996858	A	G	67	0.299	47	37.766	2.324	20	38.150	1.927	47	20	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr18:19996858	A	G	183	0.393	111	37.964	2.642	72	38.417	2.154	110	72	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr18:19996858	A	NA	224	0	224	37.571	4.338	0	0	0	215	0	CTAGE1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr1:87598268	C	T	47	0.234	36	37.278	2.186	11	38.000	2.236	36	11	LINC01140	ncRNA_intronic	NA
GBM_A_T2--2	chr1:87598268	C	T	94	0.319	64	36.500	4.317	30	35.600	4.643	61	27	LINC01140	ncRNA_intronic	NA
GBM_A_T2--3	chr1:87598268	C	T	56	0.304	39	35.000	5.689	17	37.235	2.047	33	17	LINC01140	ncRNA_intronic	NA
GBM_A_T2--4	chr1:87598268	C	T	61	0.328	41	36.415	3.943	20	36.150	3.048	39	19	LINC01140	ncRNA_intronic	NA
GBM_A_T2--5	chr1:87598268	C	T	25	0.280	18	36.889	2.988	7	37.286	2.360	17	7	LINC01140	ncRNA_intronic	NA
GBM_A_T2--6	chr1:87598268	C	T	57	0.649	20	36.850	4.258	37	37.459	2.076	19	37	LINC01140	ncRNA_intronic	NA
GBM_A_T2--GL	chr1:87598268	C	NA	67	0	67	36.627	3.737	0	0	0	64	0	LINC01140	ncRNA_intronic	NA
GBM_A_T2--1	chr18:8826054	C	A	13	0.231	10	38.200	1.549	3	36.667	3.512	10	3	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr18:8826054	C	A	20	0.050	19	36.632	2.216	1	33.000	0.000	19	1	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr18:8826054	C	NA	11	0	11	37.818	1.401	0	0	0	11	0	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr18:8826054	C	NA	27	0	27	36.889	2.607	0	0	0	26	0	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr18:8826054	C	NA	14	0	14	33.571	8.419	0	0	0	11	0	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr18:8826054	C	NA	16	0	16	36.625	3.324	0	0	0	15	0	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr18:8826054	C	NA	34	0	34	37.529	1.973	0	0	0	34	0	SOGA2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:12951379	C	NA	21	0	21	37.476	2.015	0	0	0	21	0	MAST1	intronic	NA
GBM_A_T2--2	chr19:12951379	C	NA	15	0	15	35.267	6.204	0	0	0	14	0	MAST1	intronic	NA
GBM_A_T2--3	chr19:12951379	C	NA	11	0	11	36.273	3.580	0	0	0	10	0	MAST1	intronic	NA
GBM_A_T2--4	chr19:12951379	C	NA	62	0	62	36.145	4.211	0	0	0	59	0	MAST1	intronic	NA
GBM_A_T2--5	chr19:12951379	C	A	10	0.300	7	37.429	1.134	3	36.667	3.512	7	3	MAST1	intronic	NA
GBM_A_T2--6	chr19:12951379	C	NA	31	0	30	35.800	5.397	0	0	0	26	0	MAST1	intronic	NA
GBM_A_T2--GL	chr19:12951379	C	NA	44	0	44	36.500	2.663	0	0	0	43	0	MAST1	intronic	NA
GBM_A_T2--1	chr19:16589924	T	G	99	0.101	89	37.562	2.350	10	36.300	3.093	89	10	CALR3	UTR3	NA
GBM_A_T2--2	chr19:16589924	T	G	154	0.169	128	37.430	2.515	26	37.231	5.384	127	24	CALR3	UTR3	NA
GBM_A_T2--3	chr19:16589924	T	G	93	0.269	68	37.618	2.881	25	38.880	1.833	66	25	CALR3	UTR3	NA
GBM_A_T2--4	chr19:16589924	T	G	191	0.251	142	37.563	2.792	48	37.625	2.623	140	48	CALR3	UTR3	NA
GBM_A_T2--5	chr19:16589924	T	G	54	0.315	37	38.000	1.900	17	36.588	5.734	37	16	CALR3	UTR3	NA
GBM_A_T2--6	chr19:16589924	T	G	151	0.212	119	37.235	3.019	32	37.531	2.771	118	32	CALR3	UTR3	NA
GBM_A_T2--GL	chr19:16589924	T	NA	155	0	155	36.974	3.174	0	0	0	149	0	CALR3	UTR3	NA
GBM_A_T2--1	chr19:33581803	C	A	28	0.143	24	36.792	3.776	4	37.750	1.500	22	4	GPATCH1	intronic	NA
GBM_A_T2--2	chr19:33581803	C	NA	33	0	33	36.727	5.143	0	0	0	31	0	GPATCH1	intronic	NA
GBM_A_T2--3	chr19:33581803	C	NA	36	0	36	36.972	3.291	0	0	0	35	0	GPATCH1	intronic	NA
GBM_A_T2--4	chr19:33581803	C	NA	50	0	50	36.660	5.141	0	0	0	48	0	GPATCH1	intronic	NA
GBM_A_T2--5	chr19:33581803	C	NA	14	0	14	36.143	4.148	0	0	0	13	0	GPATCH1	intronic	NA
GBM_A_T2--6	chr19:33581803	C	NA	62	0	62	37.306	3.087	0	0	0	59	0	GPATCH1	intronic	NA
GBM_A_T2--GL	chr19:33581803	C	NA	72	0	72	37.278	3.473	0	0	0	71	0	GPATCH1	intronic	NA
GBM_A_T2--1	chr19:34699933	C	A	17	0.176	14	38.214	2.119	3	36.667	3.512	14	3	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:34699933	C	NA	27	0	27	37.333	4.297	0	0	0	25	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:34699933	C	NA	16	0	16	38.875	1.500	0	0	0	16	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:34699933	C	NA	36	0	36	38.306	2.340	0	0	0	36	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:34699933	C	NA	14	0	14	38.643	2.134	0	0	0	14	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:34699933	C	NA	37	0	37	38.351	2.324	0	0	0	37	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:34699933	C	NA	34	0	34	37.647	5.222	0	0	0	32	0	LSM14A	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:36015685	C	NA	39	0	39	35.667	4.770	0	0	0	36	0	SBSN	intronic	NA
GBM_A_T2--2	chr19:36015685	C	NA	69	0	69	35.841	3.709	0	0	0	67	0	SBSN	intronic	NA
GBM_A_T2--3	chr19:36015685	C	A	25	0.160	21	35.429	7.222	4	35.750	3.403	20	4	SBSN	intronic	NA
GBM_A_T2--4	chr19:36015685	C	NA	84	0	84	35.607	3.621	0	0	0	79	0	SBSN	intronic	NA
GBM_A_T2--5	chr19:36015685	C	NA	12	0	12	35.917	3.825	0	0	0	11	0	SBSN	intronic	NA
GBM_A_T2--6	chr19:36015685	C	A	72	0.014	71	35.676	4.150	1	40.000	0.000	67	1	SBSN	intronic	NA
GBM_A_T2--GL	chr19:36015685	C	NA	80	0	80	35.013	3.787	0	0	0	71	0	SBSN	intronic	NA
GBM_A_T2--1	chr19:36054399	C	NA	17	0	17	37.059	4.534	0	0	0	16	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:36054399	C	NA	41	0	41	38.122	2.472	0	0	0	40	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:36054399	C	NA	20	0	20	35.700	5.141	0	0	0	17	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:36054399	C	NA	65	0	65	36.477	3.103	0	0	0	63	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:36054399	C	A	19	0.158	16	38.625	2.062	3	39.000	1.732	16	3	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:36054399	C	NA	60	0	60	37.750	2.778	0	0	0	59	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:36054399	C	NA	59	0	59	37.102	4.791	0	0	0	56	0	ATP4A	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:40730648	T	G	18	0.222	14	36.143	3.278	4	29.500	9.849	13	3	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:40730648	T	G	24	0.167	20	36.300	2.155	4	37.000	0.000	20	4	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:40730648	T	G	12	0.083	11	37.727	2.149	1	37.000	0.000	11	1	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:40730648	T	NA	42	0	42	36.405	3.100	0	0	0	40	0	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:40730648	T	NA	15	0	15	35.333	3.773	0	0	0	13	0	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:40730648	T	NA	36	0	36	36.028	4.501	0	0	0	34	0	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:40730648	T	NA	41	0	41	36.439	3.210	0	0	0	40	0	CNTD2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:41084030	C	NA	19	0	19	36.263	4.026	0	0	0	17	0	SHKBP1	intronic	NA
GBM_A_T2--2	chr19:41084030	C	NA	22	0	22	37.227	2.448	0	0	0	22	0	SHKBP1	intronic	NA
GBM_A_T2--3	chr19:41084030	C	NA	20	0	20	37.300	2.296	0	0	0	20	0	SHKBP1	intronic	NA
GBM_A_T2--4	chr19:41084030	C	NA	44	0	44	36.682	2.979	0	0	0	42	0	SHKBP1	intronic	NA
GBM_A_T2--5	chr19:41084030	C	A	19	0.211	15	35.933	3.262	4	36.000	2.000	14	4	SHKBP1	intronic	NA
GBM_A_T2--6	chr19:41084030	C	A	41	0.024	40	36.250	5.192	1	37.000	0.000	36	1	SHKBP1	intronic	NA
GBM_A_T2--GL	chr19:41084030	C	NA	40	0	40	36.750	3.070	0	0	0	38	0	SHKBP1	intronic	NA
GBM_A_T2--1	chr19:44057146	G	A	13	0.231	10	37.100	2.558	3	37.000	0.000	10	3	XRCC1	exonic	synonymous_SNV
GBM_A_T2--2	chr19:44057146	G	NA	24	0	24	34.708	6.760	0	0	0	21	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--3	chr19:44057146	G	NA	12	0	12	36.583	3.579	0	0	0	11	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--4	chr19:44057146	G	NA	43	0	43	36.256	3.652	0	0	0	41	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--5	chr19:44057146	G	NA	13	0	13	36.154	2.853	0	0	0	13	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--6	chr19:44057146	G	NA	42	0	42	37.262	2.348	0	0	0	42	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--GL	chr19:44057146	G	NA	49	0	49	36.755	2.488	0	0	0	49	0	XRCC1	exonic	synonymous_SNV
GBM_A_T2--1	chr19:45810778	C	NA	17	0	17	32.647	6.809	0	0	0	14	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:45810778	C	NA	35	0	35	35.429	4.154	0	0	0	32	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:45810778	C	NA	17	0	17	36.000	6.093	0	0	0	16	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:45810778	C	NA	64	0	64	34.219	6.634	0	0	0	55	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:45810778	C	A	13	0.231	10	33.700	4.270	3	33.000	9.644	8	2	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:45810778	C	NA	67	0	67	35.612	4.045	0	0	0	59	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:45810778	C	NA	71	0	71	34.662	5.398	0	0	0	64	0	CKM	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:4954329	C	NA	14	0	14	37.643	2.845	0	0	0	14	0	UHRF1	intronic	NA
GBM_A_T2--2	chr19:4954329	C	NA	27	0	27	37.222	2.665	0	0	0	27	0	UHRF1	intronic	NA
GBM_A_T2--3	chr19:4954329	C	NA	13	0	13	36.846	3.555	0	0	0	12	0	UHRF1	intronic	NA
GBM_A_T2--4	chr19:4954329	C	NA	64	0	64	36.703	3.356	0	0	0	60	0	UHRF1	intronic	NA
GBM_A_T2--5	chr19:4954329	C	A	10	0.300	7	38.286	1.604	3	36.667	3.512	7	3	UHRF1	intronic	NA
GBM_A_T2--6	chr19:4954329	C	NA	38	0	38	37.079	3.131	0	0	0	37	0	UHRF1	intronic	NA
GBM_A_T2--GL	chr19:4954329	C	NA	53	0	53	36.717	3.608	0	0	0	50	0	UHRF1	intronic	NA
GBM_A_T2--1	chr19:50462642	C	NA	20	0	20	38.100	2.269	0	0	0	20	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--2	chr19:50462642	C	NA	54	0	54	37.852	3.344	0	0	0	53	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--3	chr19:50462642	C	T	20	0.200	16	33.938	8.675	4	36.000	2.000	13	4	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--4	chr19:50462642	C	NA	92	0	92	37.511	2.873	0	0	0	91	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--5	chr19:50462642	C	NA	26	0	26	35.308	5.454	0	0	0	23	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--6	chr19:50462642	C	NA	63	0	63	36.587	4.835	0	0	0	60	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--GL	chr19:50462642	C	NA	79	0	79	37.190	3.616	0	0	0	76	0	SIGLEC11	exonic	synonymous_SNV
GBM_A_T2--1	chr19:52220398	C	T	37	0.081	34	37.618	2.015	3	36.667	3.512	34	3	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:52220398	C	T	71	0.183	58	36.879	3.095	13	37.308	2.359	56	13	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:52220398	C	T	44	0.227	34	37.265	2.988	10	36.700	2.869	33	10	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:52220398	C	T	117	0.222	91	37.385	2.032	26	37.154	2.461	91	26	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:52220398	C	T	22	0.273	16	38.000	2.422	6	37.833	2.787	16	6	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:52220398	C	T	84	0.333	55	37.636	3.643	28	37.893	2.006	54	28	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:52220398	C	NA	106	0	106	37.085	3.620	0	0	0	101	0	HAS1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:52394257	C	NA	30	0	30	37.800	2.870	0	0	0	29	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--2	chr19:52394257	C	NA	71	0	71	38.014	2.108	0	0	0	71	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--3	chr19:52394257	C	NA	47	0	47	37.106	3.002	0	0	0	45	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--4	chr19:52394257	C	NA	94	0	94	38.223	2.775	0	0	0	92	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--5	chr19:52394257	C	A	14	0.214	11	37.727	2.149	3	39.000	1.732	11	3	ZNF649	exonic	stopgain_SNV
GBM_A_T2--6	chr19:52394257	C	NA	69	0	69	37.319	2.852	0	0	0	68	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--GL	chr19:52394257	C	NA	78	0	78	38.244	2.008	0	0	0	78	0	ZNF649	exonic	stopgain_SNV
GBM_A_T2--1	chr19:54696307	G	T	32	0.156	27	38.111	3.545	5	29.200	13.122	26	4	TSEN34	intronic	NA
GBM_A_T2--2	chr19:54696307	G	T	65	0.123	57	34.737	8.541	8	36.000	1.852	49	8	TSEN34	intronic	NA
GBM_A_T2--3	chr19:54696307	G	T	28	0.214	22	37.682	3.242	6	33.333	3.670	21	5	TSEN34	intronic	NA
GBM_A_T2--4	chr19:54696307	G	NA	94	0	92	36.989	6.431	0	0	0	85	0	TSEN34	intronic	NA
GBM_A_T2--5	chr19:54696307	G	NA	12	0	12	38.500	1.567	0	0	0	12	0	TSEN34	intronic	NA
GBM_A_T2--6	chr19:54696307	G	T	65	0.031	63	37.841	4.705	2	24.000	12.728	60	1	TSEN34	intronic	NA
GBM_A_T2--GL	chr19:54696307	G	NA	64	0	64	36.406	7.313	0	0	0	59	0	TSEN34	intronic	NA
GBM_A_T2--1	chr19:56160814	C	NA	11	0	11	37.727	2.149	0	0	0	11	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr19:56160814	C	NA	33	0	33	37.212	2.859	0	0	0	32	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr19:56160814	C	NA	25	0	25	37.120	3.516	0	0	0	23	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr19:56160814	C	NA	54	0	54	36.556	4.948	0	0	0	52	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr19:56160814	C	A	13	0.231	10	37.500	2.121	3	37.000	0.000	10	3	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr19:56160814	C	NA	31	0	31	37.355	2.847	0	0	0	30	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr19:56160814	C	NA	56	0	56	37.089	2.685	0	0	0	55	0	CCDC106	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr19:7569171	G	NA	15	0	15	33.867	4.688	0	0	0	13	0	C19orf45	intronic	NA
GBM_A_T2--2	chr19:7569171	G	NA	45	0	45	35.133	6.021	0	0	0	41	0	C19orf45	intronic	NA
GBM_A_T2--3	chr19:7569171	G	NA	10	0	10	37.500	2.121	0	0	0	10	0	C19orf45	intronic	NA
GBM_A_T2--4	chr19:7569171	G	NA	64	0	64	36.656	4.423	0	0	0	63	0	C19orf45	intronic	NA
GBM_A_T2--5	chr19:7569171	G	A	14	0.214	11	37.091	2.427	3	34.333	2.309	11	3	C19orf45	intronic	NA
GBM_A_T2--6	chr19:7569171	G	NA	50	0	50	35.180	5.550	0	0	0	46	0	C19orf45	intronic	NA
GBM_A_T2--GL	chr19:7569171	G	NA	56	0	56	36.268	3.690	0	0	0	51	0	C19orf45	intronic	NA
GBM_A_T2--1	chr20:34240981	G	A	34	0.118	30	37.533	2.609	4	39.250	1.500	29	4	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr20:34240981	G	A	58	0.224	45	36.244	4.200	13	38.308	2.175	43	13	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr20:34240981	G	A	34	0.265	25	36.320	3.313	9	37.222	2.048	24	9	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr20:34240981	G	A	82	0.268	60	37.367	3.108	22	35.864	5.027	58	21	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr20:34240981	G	A	20	0.450	11	37.000	2.898	9	35.556	4.419	11	8	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr20:34240981	G	A	66	0.288	47	37.085	4.058	19	37.842	2.243	46	19	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr20:34240981	G	NA	82	0	82	37.671	2.085	0	0	0	82	0	RBM12	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr20:56093715	C	NA	40	0	39	37.205	4.758	0	0	0	36	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr20:56093715	C	NA	54	0	54	38.222	2.703	0	0	0	53	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr20:56093715	C	NA	38	0	38	37.500	3.889	0	0	0	36	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr20:56093715	C	NA	42	0	42	38.024	2.342	0	0	0	42	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr20:56093715	C	A	17	0.176	14	36.571	3.567	3	36.667	3.512	13	3	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr20:56093715	C	NA	50	0	50	38.340	2.344	0	0	0	49	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr20:56093715	C	NA	46	0	46	38.348	2.652	0	0	0	45	0	CTCFL	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr20:61512757	C	NA	29	0	29	36.897	3.509	0	0	0	28	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--2	chr20:61512757	C	NA	59	0	59	37.475	1.906	0	0	0	59	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--3	chr20:61512757	C	NA	28	0	28	37.571	4.158	0	0	0	26	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--4	chr20:61512757	C	NA	77	0	77	36.792	2.811	0	0	0	75	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--5	chr20:61512757	C	T	15	0.200	12	38.000	1.477	3	37.000	0.000	12	3	DIDO1	exonic	synonymous_SNV
GBM_A_T2--6	chr20:61512757	C	NA	70	0	70	37.400	2.742	0	0	0	67	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--GL	chr20:61512757	C	NA	50	0	50	36.260	4.208	0	0	0	47	0	DIDO1	exonic	synonymous_SNV
GBM_A_T2--1	chr20:62658539	G	A	22	0.318	15	38.133	2.066	7	34.714	5.964	15	6	PRPF6	intronic	NA
GBM_A_T2--2	chr20:62658539	G	A	51	0.275	37	36.622	4.957	14	36.786	2.392	35	14	PRPF6	intronic	NA
GBM_A_T2--3	chr20:62658539	G	A	28	0.179	23	37.261	3.033	5	38.200	1.643	22	5	PRPF6	intronic	NA
GBM_A_T2--4	chr20:62658539	G	A	97	0.175	80	37.263	2.976	17	36.647	1.998	77	17	PRPF6	intronic	NA
GBM_A_T2--5	chr20:62658539	G	A	29	0.207	23	35.913	5.368	6	37.500	1.225	21	6	PRPF6	intronic	NA
GBM_A_T2--6	chr20:62658539	G	A	78	0.282	56	37.304	2.847	22	36.864	2.900	54	21	PRPF6	intronic	NA
GBM_A_T2--GL	chr20:62658539	G	NA	72	0	71	37.225	2.773	0	0	0	70	0	PRPF6	intronic	NA
GBM_A_T2--1	chr2:122004416	C	NA	32	0	32	37.375	2.537	0	0	0	32	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr2:122004416	C	NA	71	0	71	36.859	3.173	0	0	0	69	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr2:122004416	C	A	29	0.138	23	37.348	3.270	4	37.750	1.500	22	4	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr2:122004416	C	NA	50	0	50	36.460	3.587	0	0	0	47	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr2:122004416	C	NA	22	0	22	37.682	2.378	0	0	0	22	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr2:122004416	C	NA	56	0	56	37.125	4.054	0	0	0	52	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr2:122004416	C	NA	50	0	50	37.100	3.866	0	0	0	49	0	TFCP2L1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr2:1271265	C	T	111	0.270	80	37.263	2.504	30	37.667	2.339	79	30	SNTG2	exonic	synonymous_SNV
GBM_A_T2--2	chr2:1271265	C	T	175	0.251	131	37.473	2.302	44	37.727	2.073	131	44	SNTG2	exonic	synonymous_SNV
GBM_A_T2--3	chr2:1271265	C	T	88	0.284	63	37.127	3.829	25	38.320	1.520	62	25	SNTG2	exonic	synonymous_SNV
GBM_A_T2--4	chr2:1271265	C	T	117	0.436	66	37.152	3.100	51	36.745	3.242	64	49	SNTG2	exonic	synonymous_SNV
GBM_A_T2--5	chr2:1271265	C	T	44	0.455	24	36.750	3.814	20	36.550	2.856	23	19	SNTG2	exonic	synonymous_SNV
GBM_A_T2--6	chr2:1271265	C	T	115	0.443	64	36.984	4.579	51	37.706	2.656	62	50	SNTG2	exonic	synonymous_SNV
GBM_A_T2--GL	chr2:1271265	C	NA	124	0	124	37.290	3.157	0	0	0	122	0	SNTG2	exonic	synonymous_SNV
GBM_A_T2--1	chr21:43279762	C	T	51	0.078	47	37.553	1.954	4	36.750	2.872	47	4	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr21:43279762	C	T	93	0.032	90	36.978	3.399	3	35.667	2.309	87	3	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr21:43279762	C	T	45	0.022	44	36.455	4.511	1	37.000	0.000	42	1	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr21:43279762	C	T	96	0.417	56	36.500	3.454	40	37.325	2.664	53	39	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr21:43279762	C	T	28	0.571	12	37.083	2.314	16	37.500	1.789	12	16	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr21:43279762	C	T	82	0.439	46	37.500	2.373	36	36.222	5.943	46	33	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr21:43279762	C	NA	107	0	107	37.308	2.773	0	0	0	104	0	PRDM15	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr21:46057634	T	NA	50	0	17	35.118	4.256	0	0	0	14	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--2	chr21:46057634	T	C	100	0.110	55	35.327	3.868	11	34.455	4.009	50	9	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--3	chr21:46057634	T	NA	62	0	19	33.421	6.552	0	0	0	15	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--4	chr21:46057634	T	NA	110	0	35	35.857	4.387	0	0	0	33	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--5	chr21:46057634	T	NA	33	0	10	34.200	7.239	0	0	0	9	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--6	chr21:46057634	T	NA	87	0	29	35.931	3.575	0	0	0	27	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--GL	chr21:46057634	T	NA	145	0	55	33.818	6.239	0	0	0	43	0	KRTAP10-10	exonic	synonymous_SNV
GBM_A_T2--1	chr21:47613168	G	NA	23	0	23	35.348	3.256	0	0	0	22	0	LSS	intronic	NA
GBM_A_T2--2	chr21:47613168	G	NA	35	0	35	36.629	2.636	0	0	0	35	0	LSS	intronic	NA
GBM_A_T2--3	chr21:47613168	G	NA	24	0	24	35.333	2.914	0	0	0	23	0	LSS	intronic	NA
GBM_A_T2--4	chr21:47613168	G	NA	36	0	36	34.750	5.320	0	0	0	32	0	LSS	intronic	NA
GBM_A_T2--5	chr21:47613168	G	A	20	0.050	19	36.684	2.868	1	37.000	0.000	19	1	LSS	intronic	NA
GBM_A_T2--6	chr21:47613168	G	A	29	0.517	14	36.214	4.677	15	33.533	1.407	13	15	LSS	intronic	NA
GBM_A_T2--GL	chr21:47613168	G	NA	41	0	41	34.585	4.863	0	0	0	38	0	LSS	intronic	NA
GBM_A_T2--1	chr2:17947873	T	NA	33	0	33	37.636	2.714	0	0	0	32	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr2:17947873	T	NA	61	0	61	37.508	2.592	0	0	0	60	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr2:17947873	T	NA	50	0	50	36.780	2.765	0	0	0	49	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr2:17947873	T	NA	52	0	52	37.462	2.547	0	0	0	51	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr2:17947873	T	A	17	0.176	14	37.786	2.007	3	37.000	0.000	14	3	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr2:17947873	T	NA	47	0	47	38.234	1.856	0	0	0	47	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr2:17947873	T	NA	56	0	56	37.536	2.097	0	0	0	56	0	GEN1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr2:202736947	C	NA	15	0	15	38.200	1.521	0	0	0	15	0	CDK15	intronic	NA
GBM_A_T2--2	chr2:202736947	C	NA	44	0	44	35.455	3.379	0	0	0	40	0	CDK15	intronic	NA
GBM_A_T2--3	chr2:202736947	C	NA	29	0	29	36.690	4.536	0	0	0	28	0	CDK15	intronic	NA
GBM_A_T2--4	chr2:202736947	C	NA	38	0	38	36.711	1.675	0	0	0	38	0	CDK15	intronic	NA
GBM_A_T2--5	chr2:202736947	C	A	16	0.188	13	36.615	1.805	3	37.000	0.000	13	3	CDK15	intronic	NA
GBM_A_T2--6	chr2:202736947	C	NA	30	0	30	36.933	2.149	0	0	0	30	0	CDK15	intronic	NA
GBM_A_T2--GL	chr2:202736947	C	NA	45	0	45	36.933	2.005	0	0	0	44	0	CDK15	intronic	NA
GBM_A_T2--1	chr2:207998877	G	T	36	0.222	28	32.607	7.109	8	33.250	7.592	23	7	KLF7	intronic	NA
GBM_A_T2--2	chr2:207998877	G	NA	47	0	47	33.191	5.174	0	0	0	40	0	KLF7	intronic	NA
GBM_A_T2--3	chr2:207998877	G	T	37	0.189	30	33.467	6.627	7	32.571	5.028	25	6	KLF7	intronic	NA
GBM_A_T2--4	chr2:207998877	G	T	44	0.091	38	32.553	7.202	4	35.000	2.309	31	4	KLF7	intronic	NA
GBM_A_T2--5	chr2:207998877	G	NA	16	0	16	33.438	6.772	0	0	0	13	0	KLF7	intronic	NA
GBM_A_T2--6	chr2:207998877	G	T	29	0.034	28	32.929	5.135	1	37.000	0.000	23	1	KLF7	intronic	NA
GBM_A_T2--GL	chr2:207998877	G	NA	35	0	35	32.771	6.107	0	0	0	28	0	KLF7	intronic	NA
GBM_A_T2--1	chr22:16415350	G	A	68	0.250	51	37.000	4.025	17	37.412	2.152	48	17	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--2	chr22:16415350	G	A	103	0.301	72	37.125	3.067	31	36.774	4.580	69	29	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--3	chr22:16415350	G	A	64	0.328	43	37.140	4.206	21	37.095	2.427	40	21	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--4	chr22:16415350	G	A	85	0.247	64	36.344	4.932	21	38.333	2.266	59	21	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--5	chr22:16415350	G	A	22	0.364	14	33.857	5.855	8	38.875	1.553	10	8	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--6	chr22:16415350	G	A	88	0.432	50	38.020	2.343	38	38.763	1.937	50	38	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--GL	chr22:16415350	G	NA	120	0	119	36.807	3.984	0	0	0	112	0	POTEH(dist=127413),OR11H1(dist=33474)	intergenic	NA
GBM_A_T2--1	chr22:23627392	C	A	16	0.250	12	35.000	6.647	4	35.750	3.403	11	4	BCR	intronic	NA
GBM_A_T2--2	chr22:23627392	C	NA	40	0	40	35.425	4.454	0	0	0	37	0	BCR	intronic	NA
GBM_A_T2--3	chr22:23627392	C	NA	14	0	14	36.857	3.416	0	0	0	13	0	BCR	intronic	NA
GBM_A_T2--4	chr22:23627392	C	NA	49	0	49	35.510	5.268	0	0	0	47	0	BCR	intronic	NA
GBM_A_T2--5	chr22:23627392	C	NA	10	0	10	35.700	2.497	0	0	0	10	0	BCR	intronic	NA
GBM_A_T2--6	chr22:23627392	C	NA	28	0	28	36.643	1.704	0	0	0	28	0	BCR	intronic	NA
GBM_A_T2--GL	chr22:23627392	C	NA	37	0	37	36.324	3.300	0	0	0	35	0	BCR	intronic	NA
GBM_A_T2--1	chr2:227924842	C	A	69	0.246	52	36.615	4.117	17	35.176	3.812	50	16	COL4A4	intronic	NA
GBM_A_T2--2	chr2:227924842	C	A	108	0.139	93	35.860	4.815	15	36.200	1.656	87	15	COL4A4	intronic	NA
GBM_A_T2--3	chr2:227924842	C	A	97	0.144	83	35.843	5.612	14	35.000	2.075	76	14	COL4A4	intronic	NA
GBM_A_T2--4	chr2:227924842	C	A	67	0.149	57	36.035	4.516	10	31.800	9.004	53	8	COL4A4	intronic	NA
GBM_A_T2--5	chr2:227924842	C	A	47	0.234	36	36.972	3.707	11	34.818	2.089	34	11	COL4A4	intronic	NA
GBM_A_T2--6	chr2:227924842	C	A	68	0.191	55	37.000	2.625	13	35.462	2.025	53	13	COL4A4	intronic	NA
GBM_A_T2--GL	chr2:227924842	C	NA	57	0	57	35.860	3.739	0	0	0	53	0	COL4A4	intronic	NA
GBM_A_T2--1	chr2:227967682	G	A	40	0.175	33	38.545	2.223	7	34.571	8.997	33	6	COL4A4	intronic	NA
GBM_A_T2--2	chr2:227967682	G	A	66	0.303	46	38.978	1.820	20	37.400	2.817	46	19	COL4A4	intronic	NA
GBM_A_T2--3	chr2:227967682	G	A	44	0.432	25	39.000	1.803	19	37.684	2.187	25	19	COL4A4	intronic	NA
GBM_A_T2--4	chr2:227967682	G	A	84	0.333	56	38.589	2.078	28	37.714	1.652	56	28	COL4A4	intronic	NA
GBM_A_T2--5	chr2:227967682	G	A	12	0.417	7	38.714	1.604	5	37.600	1.342	7	5	COL4A4	intronic	NA
GBM_A_T2--6	chr2:227967682	G	A	57	0.386	35	38.600	1.769	22	38.045	1.864	35	22	COL4A4	intronic	NA
GBM_A_T2--GL	chr2:227967682	G	NA	106	0	106	38.264	2.384	0	0	0	106	0	COL4A4	intronic	NA
GBM_A_T2--1	chr22:29885594	A	T	89	0.090	81	36.309	4.921	8	32.500	10.954	77	7	NEFH	exonic	synonymous_SNV
GBM_A_T2--2	chr22:29885594	A	NA	169	0	169	35.763	5.628	0	0	0	154	0	NEFH	exonic	synonymous_SNV
GBM_A_T2--3	chr22:29885594	A	T	84	0.095	76	36.329	5.380	8	37.625	2.387	71	8	NEFH	exonic	synonymous_SNV
GBM_A_T2--4	chr22:29885594	A	T	195	0.010	162	36.957	3.507	2	33.500	9.192	155	1	NEFH	exonic	synonymous_SNV
GBM_A_T2--5	chr22:29885594	A	T	51	0.196	41	35.951	3.924	10	36.500	2.068	36	10	NEFH	exonic	synonymous_SNV
GBM_A_T2--6	chr22:29885594	A	NA	198	0	197	36.467	4.734	0	0	0	189	0	NEFH	exonic	synonymous_SNV
GBM_A_T2--GL	chr22:29885594	A	NA	274	0	274	36.292	4.949	0	0	0	253	0	NEFH	exonic	synonymous_SNV
GBM_A_T2--1	chr22:36629190	C	NA	23	0	23	36.217	4.101	0	0	0	22	0	APOL2	intronic	NA
GBM_A_T2--2	chr22:36629190	C	NA	45	0	45	36.156	3.483	0	0	0	43	0	APOL2	intronic	NA
GBM_A_T2--3	chr22:36629190	C	NA	30	0	30	36.467	3.839	0	0	0	28	0	APOL2	intronic	NA
GBM_A_T2--4	chr22:36629190	C	NA	59	0	59	36.746	3.099	0	0	0	58	0	APOL2	intronic	NA
GBM_A_T2--5	chr22:36629190	C	A	14	0.286	10	33.200	9.670	4	30.500	10.504	8	3	APOL2	intronic	NA
GBM_A_T2--6	chr22:36629190	C	A	41	0.024	40	35.325	5.916	1	37.000	0.000	37	1	APOL2	intronic	NA
GBM_A_T2--GL	chr22:36629190	C	NA	76	0	76	35.776	6.296	0	0	0	71	0	APOL2	intronic	NA
GBM_A_T2--1	chr2:238896495	T	NA	58	0	49	38.735	2.352	0	0	0	48	0	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--2	chr2:238896495	T	A	76	0.013	61	38.754	1.640	1	37.000	0.000	61	1	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--3	chr2:238896495	T	A	41	0.073	35	37.571	3.632	3	39.000	1.732	33	3	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--4	chr2:238896495	T	A	36	0.194	20	37.900	3.432	7	37.286	4.751	19	6	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--5	chr2:238896495	T	NA	22	0	16	38.375	2.473	0	0	0	16	0	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--6	chr2:238896495	T	NA	41	0	37	37.541	4.356	0	0	0	36	0	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--GL	chr2:238896495	T	NA	55	0	46	37.543	3.874	0	0	0	43	0	UBE2F-SCLY	ncRNA_intronic	NA
GBM_A_T2--1	chr22:40676133	C	A	16	0.188	13	37.615	1.981	3	37.000	0.000	13	3	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr22:40676133	C	NA	33	0	33	37.333	2.654	0	0	0	33	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr22:40676133	C	NA	16	0	16	38.062	2.016	0	0	0	16	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr22:40676133	C	NA	29	0	29	36.621	3.649	0	0	0	28	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr22:40676133	C	NA	10	0	10	37.500	2.121	0	0	0	10	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr22:40676133	C	NA	28	0	28	36.179	2.855	0	0	0	28	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr22:40676133	C	NA	38	0	38	36.395	5.118	0	0	0	34	0	TNRC6B	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr22:50879252	C	NA	17	0	17	37.588	2.238	0	0	0	17	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr22:50879252	C	NA	44	0	44	37.636	3.667	0	0	0	42	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr22:50879252	C	A	26	0.154	22	35.955	4.981	4	37.000	0.000	19	4	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr22:50879252	C	NA	54	0	54	37.111	2.254	0	0	0	54	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr22:50879252	C	NA	17	0	17	35.294	6.669	0	0	0	15	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr22:50879252	C	NA	31	0	31	37.000	3.899	0	0	0	29	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr22:50879252	C	NA	60	0	60	36.200	4.153	0	0	0	54	0	PPP6R2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr22:50987045	C	NA	18	0	18	32.000	5.213	0	0	0	13	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--2	chr22:50987045	C	NA	26	0	26	36.538	4.072	0	0	0	24	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--3	chr22:50987045	C	A	13	0.231	10	35.600	3.273	3	35.667	2.309	9	3	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--4	chr22:50987045	C	NA	29	0	29	36.621	3.649	0	0	0	28	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--5	chr22:50987045	C	NA	13	0	13	35.769	4.549	0	0	0	11	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--6	chr22:50987045	C	NA	28	0	28	34.929	5.263	0	0	0	23	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--GL	chr22:50987045	C	NA	34	0	34	34.706	3.818	0	0	0	31	0	KLHDC7B	exonic	synonymous_SNV
GBM_A_T2--1	chr2:96568982	C	NA	21	0	21	38.095	1.895	0	0	0	21	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--2	chr2:96568982	C	NA	25	0	25	37.720	2.283	0	0	0	25	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--3	chr2:96568982	C	T	26	0.154	22	37.318	2.750	4	35.250	5.679	22	3	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--4	chr2:96568982	C	NA	55	0	55	37.600	2.477	0	0	0	55	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--5	chr2:96568982	C	NA	14	0	14	38.071	1.492	0	0	0	14	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--6	chr2:96568982	C	NA	35	0	34	37.529	1.973	0	0	0	34	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--GL	chr2:96568982	C	NA	60	0	59	36.746	2.910	0	0	0	57	0	LINC00342(dist=76253),FAHD2CP(dist=107317)	intergenic	NA
GBM_A_T2--1	chr3:113012914	C	NA	59	0	59	37.339	4.237	0	0	0	57	0	WDR52	intronic	NA
GBM_A_T2--2	chr3:113012914	C	NA	88	0	88	37.307	4.364	0	0	0	84	0	WDR52	intronic	NA
GBM_A_T2--3	chr3:113012914	C	NA	73	0	73	37.055	5.495	0	0	0	68	0	WDR52	intronic	NA
GBM_A_T2--4	chr3:113012914	C	NA	58	0	58	37.379	3.797	0	0	0	56	0	WDR52	intronic	NA
GBM_A_T2--5	chr3:113012914	C	A	25	0.160	21	36.714	4.088	4	39.250	1.500	20	4	WDR52	intronic	NA
GBM_A_T2--6	chr3:113012914	C	NA	80	0	80	38.225	2.164	0	0	0	80	0	WDR52	intronic	NA
GBM_A_T2--GL	chr3:113012914	C	NA	71	0	71	37.732	2.793	0	0	0	69	0	WDR52	intronic	NA
GBM_A_T2--1	chr3:119112527	C	NA	29	0	29	36.931	3.474	0	0	0	27	0	ARHGAP31	intronic	NA
GBM_A_T2--2	chr3:119112527	C	NA	49	0	49	36.939	3.992	0	0	0	48	0	ARHGAP31	intronic	NA
GBM_A_T2--3	chr3:119112527	C	NA	29	0	29	37.793	2.411	0	0	0	29	0	ARHGAP31	intronic	NA
GBM_A_T2--4	chr3:119112527	C	NA	48	0	48	37.021	3.252	0	0	0	47	0	ARHGAP31	intronic	NA
GBM_A_T2--5	chr3:119112527	C	A	13	0.231	10	36.900	1.663	3	39.000	1.732	10	3	ARHGAP31	intronic	NA
GBM_A_T2--6	chr3:119112527	C	NA	33	0	33	37.455	2.538	0	0	0	33	0	ARHGAP31	intronic	NA
GBM_A_T2--GL	chr3:119112527	C	NA	60	0	60	36.867	2.873	0	0	0	58	0	ARHGAP31	intronic	NA
GBM_A_T2--1	chr3:123419627	G	T	198	0.106	177	36.661	3.602	21	32.667	7.946	165	18	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr3:123419627	G	T	278	0.338	184	36.310	4.237	94	35.691	4.316	173	85	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr3:123419627	G	T	218	0.358	140	36.300	3.908	78	36.910	2.620	131	77	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr3:123419627	G	T	284	0.419	165	36.327	4.273	119	37.143	2.989	158	116	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr3:123419627	G	T	104	0.375	65	37.015	2.540	39	37.282	2.937	64	38	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr3:123419627	G	T	258	0.399	155	36.458	3.539	103	36.728	3.203	148	102	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr3:123419627	G	NA	300	0	300	36.307	3.555	0	0	0	287	0	MYLK	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr3:133673835	C	A	26	0.154	22	35.273	7.199	4	37.750	1.500	20	4	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr3:133673835	C	NA	33	0	33	36.909	2.754	0	0	0	33	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr3:133673835	C	NA	31	0	31	36.871	2.986	0	0	0	31	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr3:133673835	C	NA	49	0	49	36.245	4.206	0	0	0	47	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr3:133673835	C	NA	14	0	14	35.143	6.419	0	0	0	13	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr3:133673835	C	NA	36	0	36	36.278	2.992	0	0	0	35	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr3:133673835	C	NA	52	0	51	36.706	3.679	0	0	0	48	0	SLCO2A1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr3:13679191	G	A	38	0.158	32	36.531	4.536	6	35.000	2.191	31	6	FBLN2	exonic	synonymous_SNV
GBM_A_T2--2	chr3:13679191	G	A	60	0.133	52	36.538	3.202	8	36.000	4.243	51	7	FBLN2	exonic	synonymous_SNV
GBM_A_T2--3	chr3:13679191	G	A	27	0.296	19	35.579	4.439	8	35.875	2.588	16	8	FBLN2	exonic	synonymous_SNV
GBM_A_T2--4	chr3:13679191	G	A	48	0.375	30	36.867	3.569	18	32.889	6.685	29	15	FBLN2	exonic	synonymous_SNV
GBM_A_T2--5	chr3:13679191	G	A	24	0.333	15	37.267	2.187	8	34.875	5.842	15	7	FBLN2	exonic	synonymous_SNV
GBM_A_T2--6	chr3:13679191	G	A	37	0.324	25	36.840	2.764	12	37.333	2.462	25	12	FBLN2	exonic	synonymous_SNV
GBM_A_T2--GL	chr3:13679191	G	NA	74	0	74	36.568	3.429	0	0	0	70	0	FBLN2	exonic	synonymous_SNV
GBM_A_T2--1	chr3:14105600	G	NA	15	0	15	36.200	3.167	0	0	0	14	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--2	chr3:14105600	G	NA	37	0	37	37.486	2.959	0	0	0	36	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--3	chr3:14105600	G	NA	25	0	25	37.920	2.581	0	0	0	25	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--4	chr3:14105600	G	NA	38	0	38	36.737	5.908	0	0	0	36	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--5	chr3:14105600	G	A	17	0.176	14	37.714	2.463	3	38.000	1.732	14	3	TPRXL	ncRNA_exonic	NA
GBM_A_T2--6	chr3:14105600	G	NA	39	0	38	35.816	5.872	0	0	0	36	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--GL	chr3:14105600	G	NA	45	0	45	36.956	4.632	0	0	0	42	0	TPRXL	ncRNA_exonic	NA
GBM_A_T2--1	chr3:156422507	C	NA	29	0	29	37.655	4.108	0	0	0	27	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr3:156422507	C	NA	66	0	66	37.591	2.307	0	0	0	66	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr3:156422507	C	NA	38	0	37	37.108	4.937	0	0	0	34	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr3:156422507	C	NA	57	0	57	37.982	2.709	0	0	0	56	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr3:156422507	C	A	12	0.250	9	38.889	2.421	3	37.000	0.000	9	3	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr3:156422507	C	NA	42	0	42	37.048	3.741	0	0	0	40	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr3:156422507	C	NA	54	0	54	37.648	3.503	0	0	0	52	0	TIPARP	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr3:165320327	C	NA	35	0	35	38.029	2.135	0	0	0	35	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--2	chr3:165320327	C	NA	46	0	46	36.652	3.093	0	0	0	44	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--3	chr3:165320327	C	NA	32	0	32	38.188	1.768	0	0	0	32	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--4	chr3:165320327	C	NA	19	0	19	38.053	1.929	0	0	0	19	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--5	chr3:165320327	C	NA	15	0	15	37.333	1.718	0	0	0	15	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--6	chr3:165320327	C	A	13	0.231	10	38.100	2.331	3	38.000	1.732	10	3	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--GL	chr3:165320327	C	NA	38	0	38	36.947	4.210	0	0	0	37	0	SLITRK3(dist=405858),BCHE(dist=170365)	intergenic	NA
GBM_A_T2--1	chr3:166969870	T	C	26	0.231	20	38.300	1.949	6	39.500	1.225	20	6	ZBBX	intronic	NA
GBM_A_T2--2	chr3:166969870	T	C	61	0.230	47	37.426	4.558	14	37.429	3.936	45	13	ZBBX	intronic	NA
GBM_A_T2--3	chr3:166969870	T	C	37	0.595	15	37.733	1.944	22	37.364	4.006	15	20	ZBBX	intronic	NA
GBM_A_T2--4	chr3:166969870	T	C	38	0.395	23	38.348	2.208	15	37.933	2.017	23	15	ZBBX	intronic	NA
GBM_A_T2--5	chr3:166969870	T	C	13	0.462	7	36.286	2.498	6	39.000	1.549	7	6	ZBBX	intronic	NA
GBM_A_T2--6	chr3:166969870	T	C	23	0.478	12	38.500	1.567	11	38.818	2.272	12	11	ZBBX	intronic	NA
GBM_A_T2--GL	chr3:166969870	T	NA	38	0	38	38.026	2.666	0	0	0	37	0	ZBBX	intronic	NA
GBM_A_T2--1	chr3:189713346	T	G	25	0.040	21	33.476	4.926	1	37.000	0.000	17	1	LEPREL1	intronic	NA
GBM_A_T2--2	chr3:189713346	T	NA	47	0	42	33.714	6.395	0	0	0	36	0	LEPREL1	intronic	NA
GBM_A_T2--3	chr3:189713346	T	NA	35	0	32	33.000	8.112	0	0	0	26	0	LEPREL1	intronic	NA
GBM_A_T2--4	chr3:189713346	T	NA	42	0	40	33.325	7.457	0	0	0	33	0	LEPREL1	intronic	NA
GBM_A_T2--5	chr3:189713346	T	G	10	0.300	6	35.667	2.066	3	34.333	2.309	6	3	LEPREL1	intronic	NA
GBM_A_T2--6	chr3:189713346	T	NA	44	0	42	34.643	5.112	0	0	0	37	0	LEPREL1	intronic	NA
GBM_A_T2--GL	chr3:189713346	T	NA	46	0	39	35.359	3.468	0	0	0	36	0	LEPREL1	intronic	NA
GBM_A_T2--1	chr3:195426230	T	NA	33	0	8	36.375	2.326	0	0	0	8	0	MIR570	upstream	NA
GBM_A_T2--2	chr3:195426230	T	C	55	0.691	17	36.882	3.839	38	37.158	3.167	16	37	MIR570	upstream	NA
GBM_A_T2--3	chr3:195426230	T	NA	31	0	14	35.857	3.371	0	0	0	13	0	MIR570	upstream	NA
GBM_A_T2--4	chr3:195426230	T	C	54	0.759	13	36.538	3.711	41	36.341	4.408	12	39	MIR570	upstream	NA
GBM_A_T2--5	chr3:195426230	T	C	15	0.800	3	37.000	0.000	12	37.917	2.151	3	12	MIR570	upstream	NA
GBM_A_T2--6	chr3:195426230	T	C	43	0.814	8	36.250	2.964	35	36.457	4.210	8	32	MIR570	upstream	NA
GBM_A_T2--GL	chr3:195426230	T	NA	89	0	34	36.912	2.193	0	0	0	34	0	MIR570	upstream	NA
GBM_A_T2--1	chr3:195426231	G	NA	33	0	8	37.625	2.387	0	0	0	8	0	MIR570	upstream	NA
GBM_A_T2--2	chr3:195426231	G	A	55	0.691	17	37.824	2.984	38	37.711	1.985	17	38	MIR570	upstream	NA
GBM_A_T2--3	chr3:195426231	G	NA	31	0	14	37.071	2.129	0	0	0	14	0	MIR570	upstream	NA
GBM_A_T2--4	chr3:195426231	G	A	55	0.745	14	37.071	2.129	41	36.902	3.040	14	40	MIR570	upstream	NA
GBM_A_T2--5	chr3:195426231	G	A	17	0.765	4	36.750	2.872	13	37.846	2.075	4	13	MIR570	upstream	NA
GBM_A_T2--6	chr3:195426231	G	A	43	0.814	8	37.750	1.389	35	36.686	4.626	8	33	MIR570	upstream	NA
GBM_A_T2--GL	chr3:195426231	G	NA	90	0	35	36.543	2.034	0	0	0	35	0	MIR570	upstream	NA
GBM_A_T2--1	chr3:47446156	C	NA	31	0	31	36.258	2.828	0	0	0	30	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--2	chr3:47446156	C	NA	23	0	23	36.478	4.337	0	0	0	21	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--3	chr3:47446156	C	A	12	0.333	8	37.250	2.188	4	37.500	3.317	8	4	PTPN23	exonic	synonymous_SNV
GBM_A_T2--4	chr3:47446156	C	NA	33	0	33	36.000	4.062	0	0	0	29	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--5	chr3:47446156	C	NA	14	0	14	37.500	3.674	0	0	0	13	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--6	chr3:47446156	C	NA	18	0	18	35.333	7.941	0	0	0	16	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--GL	chr3:47446156	C	NA	59	0	59	36.288	4.303	0	0	0	56	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--1	chr3:47446160	C	NA	31	0	31	36.806	2.227	0	0	0	31	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--2	chr3:47446160	C	A	23	0.043	22	37.182	2.684	1	37.000	0.000	22	1	PTPN23	exonic	synonymous_SNV
GBM_A_T2--3	chr3:47446160	C	NA	13	0	13	37.615	1.981	0	0	0	13	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--4	chr3:47446160	C	NA	34	0	34	35.706	4.802	0	0	0	31	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--5	chr3:47446160	C	A	14	0.214	11	38.636	1.567	3	38.000	1.732	11	3	PTPN23	exonic	synonymous_SNV
GBM_A_T2--6	chr3:47446160	C	NA	19	0	18	36.278	3.832	0	0	0	17	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--GL	chr3:47446160	C	NA	60	0	60	35.883	4.415	0	0	0	57	0	PTPN23	exonic	synonymous_SNV
GBM_A_T2--1	chr3:49700691	C	A	34	0.059	32	36.719	3.630	2	35.000	2.828	31	2	BSN	exonic	synonymous_SNV
GBM_A_T2--2	chr3:49700691	C	NA	59	0	59	37.373	3.523	0	0	0	58	0	BSN	exonic	synonymous_SNV
GBM_A_T2--3	chr3:49700691	C	NA	28	0	28	37.107	2.558	0	0	0	28	0	BSN	exonic	synonymous_SNV
GBM_A_T2--4	chr3:49700691	C	NA	79	0	79	37.025	3.570	0	0	0	77	0	BSN	exonic	synonymous_SNV
GBM_A_T2--5	chr3:49700691	C	A	11	0.273	8	37.250	2.188	3	36.667	3.512	8	3	BSN	exonic	synonymous_SNV
GBM_A_T2--6	chr3:49700691	C	NA	72	0	72	37.625	3.350	0	0	0	71	0	BSN	exonic	synonymous_SNV
GBM_A_T2--GL	chr3:49700691	C	NA	81	0	81	36.580	4.324	0	0	0	77	0	BSN	exonic	synonymous_SNV
GBM_A_T2--1	chr3:50338388	A	NA	24	0	13	22.385	8.627	0	0	0	3	0	HYAL1	intronic	NA
GBM_A_T2--2	chr3:50338388	A	NA	45	0	34	25.059	7.491	0	0	0	11	0	HYAL1	intronic	NA
GBM_A_T2--3	chr3:50338388	A	C	19	0.316	13	24.846	7.526	6	20.167	11.514	4	1	HYAL1	intronic	NA
GBM_A_T2--4	chr3:50338388	A	C	54	0.259	39	23.564	8.741	14	21.429	8.055	9	2	HYAL1	intronic	NA
GBM_A_T2--5	chr3:50338388	A	C	14	0.143	12	24.750	9.891	2	24.000	12.728	5	1	HYAL1	intronic	NA
GBM_A_T2--6	chr3:50338388	A	C	36	0.111	32	24.844	7.436	4	20.750	11.117	9	1	HYAL1	intronic	NA
GBM_A_T2--GL	chr3:50338388	A	NA	62	0	56	24.661	8.967	0	0	0	21	0	HYAL1	intronic	NA
GBM_A_T2--1	chr4:122682724	C	A	35	0.029	34	37.529	2.643	1	37.000	0.000	33	1	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr4:122682724	C	A	49	0.020	48	37.042	2.873	1	37.000	0.000	47	1	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr4:122682724	C	A	28	0.036	27	38.111	1.476	1	40.000	0.000	27	1	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr4:122682724	C	NA	32	0	32	37.094	2.998	0	0	0	31	0	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr4:122682724	C	A	12	0.250	9	37.111	2.713	3	38.000	1.732	9	3	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr4:122682724	C	NA	25	0	25	37.680	2.512	0	0	0	25	0	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr4:122682724	C	NA	34	0	34	37.618	2.015	0	0	0	34	0	TMEM155	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr4:126411753	C	NA	56	0	56	37.000	3.185	0	0	0	53	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--2	chr4:126411753	C	NA	119	0	119	36.739	2.638	0	0	0	116	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--3	chr4:126411753	C	NA	68	0	68	36.368	2.942	0	0	0	66	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--4	chr4:126411753	C	NA	120	0	120	36.383	3.093	0	0	0	115	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--5	chr4:126411753	C	A	27	0.148	23	36.870	1.842	4	38.500	1.732	23	4	FAT4	exonic	synonymous_SNV
GBM_A_T2--6	chr4:126411753	C	NA	89	0	89	36.865	3.206	0	0	0	88	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--GL	chr4:126411753	C	NA	99	0	99	36.263	3.122	0	0	0	93	0	FAT4	exonic	synonymous_SNV
GBM_A_T2--1	chr4:185350199	C	T	84	0.190	68	37.162	2.155	16	36.000	3.162	68	15	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr4:185350199	C	T	94	0.404	56	36.679	3.203	38	35.053	4.986	54	35	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr4:185350199	C	T	75	0.347	49	35.306	4.068	26	36.269	3.014	47	25	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr4:185350199	C	T	135	0.481	70	34.186	5.221	65	35.908	4.107	59	62	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr4:185350199	C	T	27	0.148	23	36.435	3.501	4	32.500	4.123	21	3	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr4:185350199	C	T	91	0.396	55	35.836	3.579	36	35.333	4.408	50	34	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr4:185350199	C	NA	112	0	112	36.161	4.252	0	0	0	108	0	IRF2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr4:4239635	C	NA	34	0	34	38.353	1.998	0	0	0	34	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr4:4239635	C	NA	48	0	48	36.771	3.244	0	0	0	45	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr4:4239635	C	NA	38	0	38	37.368	2.006	0	0	0	38	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr4:4239635	C	NA	54	0	54	37.278	4.562	0	0	0	51	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr4:4239635	C	A	15	0.200	12	38.250	1.545	3	35.667	2.309	12	3	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr4:4239635	C	NA	34	0	34	37.882	1.387	0	0	0	34	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr4:4239635	C	NA	66	0	66	36.879	5.798	0	0	0	63	0	TMEM128	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr4:47543	G	C	48	0.021	47	37.383	2.626	1	33.000	0.000	46	1	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--2	chr4:47543	G	C	68	0.059	64	36.453	3.972	4	36.000	2.000	61	4	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--3	chr4:47543	G	C	79	0.063	74	36.405	5.596	5	37.000	0.000	72	5	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--4	chr4:47543	G	C	34	0.088	31	36.742	3.577	3	29.000	3.464	30	1	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--5	chr4:47543	G	NA	11	0	11	36.273	3.580	0	0	0	10	0	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--6	chr4:47543	G	C	30	0.233	22	35.455	7.130	7	33.714	5.499	21	6	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--GL	chr4:47543	G	NA	33	0	33	36.788	3.267	0	0	0	33	0	NONE(dist=NONE),ZNF595(dist=5636)	intergenic	NA
GBM_A_T2--1	chr4:79522754	C	NA	52	0	52	36.019	3.202	0	0	0	49	0	ANXA3	intronic	NA
GBM_A_T2--2	chr4:79522754	C	NA	70	0	70	36.686	2.852	0	0	0	69	0	ANXA3	intronic	NA
GBM_A_T2--3	chr4:79522754	C	NA	64	0	64	36.047	3.484	0	0	0	61	0	ANXA3	intronic	NA
GBM_A_T2--4	chr4:79522754	C	NA	50	0	50	37.600	2.213	0	0	0	50	0	ANXA3	intronic	NA
GBM_A_T2--5	chr4:79522754	C	A	23	0.174	18	36.722	2.697	4	36.500	4.041	18	4	ANXA3	intronic	NA
GBM_A_T2--6	chr4:79522754	C	NA	51	0	51	36.706	2.788	0	0	0	50	0	ANXA3	intronic	NA
GBM_A_T2--GL	chr4:79522754	C	NA	49	0	49	37.306	2.468	0	0	0	49	0	ANXA3	intronic	NA
GBM_A_T2--1	chr4:91832411	G	A	64	0.141	55	37.873	2.310	9	37.889	2.369	54	9	CCSER1	intronic	NA
GBM_A_T2--2	chr4:91832411	G	A	99	0.323	67	37.836	2.254	32	37.094	1.729	66	32	CCSER1	intronic	NA
GBM_A_T2--3	chr4:91832411	G	A	96	0.333	64	37.828	2.222	32	38.031	1.448	64	32	CCSER1	intronic	NA
GBM_A_T2--4	chr4:91832411	G	A	57	0.351	37	37.757	1.817	20	37.700	2.922	37	19	CCSER1	intronic	NA
GBM_A_T2--5	chr4:91832411	G	A	38	0.132	33	38.727	1.506	5	36.800	2.490	33	5	CCSER1	intronic	NA
GBM_A_T2--6	chr4:91832411	G	A	63	0.317	43	37.349	3.921	20	37.700	1.780	42	20	CCSER1	intronic	NA
GBM_A_T2--GL	chr4:91832411	G	NA	58	0	58	38.086	1.894	0	0	0	58	0	CCSER1	intronic	NA
GBM_A_T2--1	chr5:10263456	G	A	15	0.267	11	37.182	1.834	4	35.000	2.309	11	4	CCT5	intronic	NA
GBM_A_T2--2	chr5:10263456	G	NA	34	0	34	37.176	2.949	0	0	0	33	0	CCT5	intronic	NA
GBM_A_T2--3	chr5:10263456	G	NA	20	0	20	36.900	2.654	0	0	0	20	0	CCT5	intronic	NA
GBM_A_T2--4	chr5:10263456	G	NA	44	0	44	36.614	3.251	0	0	0	42	0	CCT5	intronic	NA
GBM_A_T2--5	chr5:10263456	G	NA	12	0	12	37.000	2.763	0	0	0	12	0	CCT5	intronic	NA
GBM_A_T2--6	chr5:10263456	G	NA	37	0	37	36.676	3.400	0	0	0	35	0	CCT5	intronic	NA
GBM_A_T2--GL	chr5:10263456	G	NA	56	0	56	36.839	3.241	0	0	0	55	0	CCT5	intronic	NA
GBM_A_T2--1	chr5:127684972	C	NA	33	0	33	36.758	2.488	0	0	0	33	0	FBN2	intronic	NA
GBM_A_T2--2	chr5:127684972	C	NA	63	0	63	36.302	4.445	0	0	0	59	0	FBN2	intronic	NA
GBM_A_T2--3	chr5:127684972	C	NA	35	0	35	36.171	3.356	0	0	0	34	0	FBN2	intronic	NA
GBM_A_T2--4	chr5:127684972	C	A	78	0.013	77	37.013	3.507	1	37.000	0.000	75	1	FBN2	intronic	NA
GBM_A_T2--5	chr5:127684972	C	A	20	0.200	15	37.067	2.052	4	39.250	1.500	15	4	FBN2	intronic	NA
GBM_A_T2--6	chr5:127684972	C	NA	50	0	50	36.760	3.456	0	0	0	48	0	FBN2	intronic	NA
GBM_A_T2--GL	chr5:127684972	C	NA	71	0	71	36.535	3.805	0	0	0	69	0	FBN2	intronic	NA
GBM_A_T2--1	chr5:140605321	C	NA	74	0	74	36.432	3.879	0	0	0	70	0	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr5:140605321	C	A	124	0.008	123	36.268	4.583	1	33.000	0.000	116	1	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr5:140605321	C	NA	50	0	50	36.720	3.923	0	0	0	46	0	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr5:140605321	C	NA	118	0	118	36.051	4.563	0	0	0	109	0	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr5:140605321	C	A	27	0.148	23	36.391	2.950	4	37.000	0.000	22	4	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr5:140605321	C	NA	68	0	68	36.926	4.176	0	0	0	66	0	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr5:140605321	C	NA	137	0	137	37.285	2.711	0	0	0	134	0	PCDHB14	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr5:145851085	A	NA	58	0	58	38.293	4.660	0	0	0	57	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr5:145851085	A	NA	70	0	70	38.429	1.758	0	0	0	70	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr5:145851085	A	NA	43	0	43	38.279	2.831	0	0	0	42	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr5:145851085	A	NA	61	0	61	38.279	2.596	0	0	0	60	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr5:145851085	A	G	16	0.188	13	37.769	2.555	3	39.000	1.732	13	3	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr5:145851085	A	NA	57	0	57	37.912	4.804	0	0	0	55	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr5:145851085	A	NA	58	0	58	38.241	2.697	0	0	0	56	0	TCERG1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr5:16762252	A	NA	37	0	36	38.667	2.165	0	0	0	36	0	MYO10	intronic	NA
GBM_A_T2--2	chr5:16762252	A	NA	53	0	53	37.830	3.030	0	0	0	52	0	MYO10	intronic	NA
GBM_A_T2--3	chr5:16762252	A	T	42	0.310	29	37.517	4.793	13	37.615	1.981	28	13	MYO10	intronic	NA
GBM_A_T2--4	chr5:16762252	A	NA	30	0	29	38.690	2.072	0	0	0	29	0	MYO10	intronic	NA
GBM_A_T2--5	chr5:16762252	A	NA	21	0	21	36.714	5.866	0	0	0	19	0	MYO10	intronic	NA
GBM_A_T2--6	chr5:16762252	A	T	36	0.028	35	37.743	2.737	1	40.000	0.000	35	1	MYO10	intronic	NA
GBM_A_T2--GL	chr5:16762252	A	NA	35	0	35	37.829	3.258	0	0	0	34	0	MYO10	intronic	NA
GBM_A_T2--1	chr5:21491825	G	A	17	0.118	15	37.200	2.569	2	37.000	0.000	15	2	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--2	chr5:21491825	G	A	22	0.182	18	35.667	6.362	4	38.500	1.732	16	4	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--3	chr5:21491825	G	NA	16	0	16	36.750	4.359	0	0	0	15	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--4	chr5:21491825	G	NA	25	0	25	37.400	3.342	0	0	0	24	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--5	chr5:21491825	G	A	16	0.062	15	37.467	2.295	1	37.000	0.000	15	1	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--6	chr5:21491825	G	NA	26	0	26	35.577	5.124	0	0	0	24	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--GL	chr5:21491825	G	NA	34	0	34	35.382	4.207	0	0	0	31	0	GUSBP1	ncRNA_intronic	NA
GBM_A_T2--1	chr5:23305241	C	T	135	0.178	111	36.162	3.912	24	36.375	3.062	105	23	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--2	chr5:23305241	C	T	186	0.247	140	36.571	3.374	46	35.043	5.593	134	41	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--3	chr5:23305241	C	T	142	0.246	107	36.813	3.207	35	36.857	1.912	102	35	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--4	chr5:23305241	C	T	191	0.372	120	35.775	4.143	71	36.845	3.078	112	68	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--5	chr5:23305241	C	T	71	0.296	50	36.040	5.796	21	36.238	2.773	46	20	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--6	chr5:23305241	C	T	173	0.341	114	35.921	4.182	59	36.695	2.615	107	57	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--GL	chr5:23305241	C	NA	190	0	190	36.321	4.148	0	0	0	179	0	CDH12(dist=451510),PRDM9(dist=202483)	intergenic	NA
GBM_A_T2--1	chr5:31508713	C	NA	33	0	33	36.667	3.854	0	0	0	31	0	DROSHA	intronic	NA
GBM_A_T2--2	chr5:31508713	C	A	54	0.019	53	36.887	4.255	1	37.000	0.000	51	1	DROSHA	intronic	NA
GBM_A_T2--3	chr5:31508713	C	NA	26	0	26	38.038	2.341	0	0	0	26	0	DROSHA	intronic	NA
GBM_A_T2--4	chr5:31508713	C	NA	54	0	54	36.481	4.441	0	0	0	48	0	DROSHA	intronic	NA
GBM_A_T2--5	chr5:31508713	C	A	16	0.188	13	38.538	2.184	3	38.000	1.732	13	3	DROSHA	intronic	NA
GBM_A_T2--6	chr5:31508713	C	NA	39	0	39	37.051	4.662	0	0	0	37	0	DROSHA	intronic	NA
GBM_A_T2--GL	chr5:31508713	C	NA	51	0	51	36.980	5.704	0	0	0	46	0	DROSHA	intronic	NA
GBM_A_T2--1	chr5:80503066	C	NA	13	0	13	36.923	3.252	0	0	0	12	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr5:80503066	C	NA	28	0	28	37.500	2.472	0	0	0	27	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr5:80503066	C	NA	31	0	31	36.581	3.443	0	0	0	29	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr5:80503066	C	NA	41	0	41	36.732	3.058	0	0	0	40	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr5:80503066	C	A	18	0.167	15	37.867	2.446	3	38.000	1.732	15	3	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr5:80503066	C	NA	25	0	25	36.520	3.084	0	0	0	24	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr5:80503066	C	NA	44	0	44	37.068	3.572	0	0	0	42	0	RASGRF2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr5:94046529	C	A	12	0.250	9	33.556	7.367	3	38.000	1.732	8	3	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr5:94046529	C	NA	37	0	37	36.649	2.658	0	0	0	36	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr5:94046529	C	NA	18	0	18	36.667	1.940	0	0	0	18	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr5:94046529	C	NA	42	0	42	35.548	3.717	0	0	0	39	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr5:94046529	C	NA	15	0	15	36.467	2.825	0	0	0	15	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr5:94046529	C	NA	55	0	55	36.455	2.834	0	0	0	53	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr5:94046529	C	NA	61	0	61	36.951	2.397	0	0	0	60	0	MCTP1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr6:131913486	C	NA	58	0	58	37.862	2.982	0	0	0	56	0	MED23	intronic	NA
GBM_A_T2--2	chr6:131913486	C	NA	87	0	87	38.333	3.255	0	0	0	86	0	MED23	intronic	NA
GBM_A_T2--3	chr6:131913486	C	NA	58	0	58	38.328	2.055	0	0	0	58	0	MED23	intronic	NA
GBM_A_T2--4	chr6:131913486	C	NA	85	0	85	38.424	2.222	0	0	0	85	0	MED23	intronic	NA
GBM_A_T2--5	chr6:131913486	C	A	11	0.273	8	39.625	1.061	3	39.000	1.732	8	3	MED23	intronic	NA
GBM_A_T2--6	chr6:131913486	C	A	68	0.015	67	37.373	4.082	1	40.000	0.000	64	1	MED23	intronic	NA
GBM_A_T2--GL	chr6:131913486	C	NA	120	0	120	37.283	4.846	0	0	0	113	0	MED23	intronic	NA
GBM_A_T2--1	chr6:138197273	C	NA	12	0	12	38.917	2.193	0	0	0	12	0	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr6:138197273	C	NA	48	0	48	38.438	3.897	0	0	0	47	0	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr6:138197273	C	NA	30	0	30	37.000	3.051	0	0	0	29	0	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr6:138197273	C	NA	42	0	42	38.000	2.024	0	0	0	42	0	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr6:138197273	C	A	15	0.200	12	38.000	1.477	3	37.000	0.000	12	3	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr6:138197273	C	A	42	0.024	41	37.878	2.002	1	37.000	0.000	41	1	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr6:138197273	C	NA	55	0	55	36.982	4.912	0	0	0	54	0	TNFAIP3	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr6:159190829	C	A	25	0.160	21	35.714	4.606	4	36.000	2.000	19	4	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr6:159190829	C	NA	45	0	44	36.136	4.496	0	0	0	42	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr6:159190829	C	NA	27	0	26	35.577	4.420	0	0	0	24	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr6:159190829	C	NA	58	0	58	35.879	5.474	0	0	0	54	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr6:159190829	C	NA	17	0	17	35.882	3.706	0	0	0	16	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr6:159190829	C	NA	35	0	35	36.686	4.568	0	0	0	34	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr6:159190829	C	NA	57	0	57	36.368	3.735	0	0	0	53	0	EZR	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr6:31735094	C	A	31	0.161	26	37.115	1.925	5	38.000	3.082	26	5	VWA7	intronic	NA
GBM_A_T2--2	chr6:31735094	C	NA	36	0	36	36.333	3.913	0	0	0	34	0	VWA7	intronic	NA
GBM_A_T2--3	chr6:31735094	C	NA	17	0	17	35.235	5.847	0	0	0	16	0	VWA7	intronic	NA
GBM_A_T2--4	chr6:31735094	C	NA	44	0	44	36.500	3.379	0	0	0	42	0	VWA7	intronic	NA
GBM_A_T2--5	chr6:31735094	C	NA	26	0	26	36.115	5.195	0	0	0	24	0	VWA7	intronic	NA
GBM_A_T2--6	chr6:31735094	C	NA	63	0	63	36.365	4.513	0	0	0	61	0	VWA7	intronic	NA
GBM_A_T2--GL	chr6:31735094	C	NA	69	0	69	37.580	2.494	0	0	0	68	0	VWA7	intronic	NA
GBM_A_T2--1	chr6:33232255	C	NA	27	0	27	36.778	3.105	0	0	0	26	0	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr6:33232255	C	A	40	0.050	38	35.684	4.400	2	37.000	0.000	36	2	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr6:33232255	C	NA	29	0	29	36.759	3.136	0	0	0	28	0	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr6:33232255	C	NA	53	0	53	35.849	5.450	0	0	0	48	0	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr6:33232255	C	A	14	0.214	11	38.273	2.284	3	37.000	0.000	11	3	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr6:33232255	C	NA	42	0	42	37.190	2.796	0	0	0	41	0	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr6:33232255	C	NA	62	0	62	36.790	4.733	0	0	0	60	0	VPS52	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr6:4057486	C	NA	47	0	47	37.383	5.194	0	0	0	46	0	PRPF4B	intronic	NA
GBM_A_T2--2	chr6:4057486	C	NA	68	0	68	37.882	2.680	0	0	0	67	0	PRPF4B	intronic	NA
GBM_A_T2--3	chr6:4057486	C	NA	43	0	43	38.070	2.806	0	0	0	42	0	PRPF4B	intronic	NA
GBM_A_T2--4	chr6:4057486	C	NA	65	0	65	37.462	2.834	0	0	0	64	0	PRPF4B	intronic	NA
GBM_A_T2--5	chr6:4057486	C	A	18	0.167	15	36.867	3.091	3	37.667	4.041	15	3	PRPF4B	intronic	NA
GBM_A_T2--6	chr6:4057486	C	NA	59	0	59	37.458	2.641	0	0	0	59	0	PRPF4B	intronic	NA
GBM_A_T2--GL	chr6:4057486	C	NA	66	0	66	37.167	3.242	0	0	0	64	0	PRPF4B	intronic	NA
GBM_A_T2--1	chr6:7574846	A	G	40	0.250	30	38.433	2.788	10	37.400	2.716	29	10	DSP	intronic	NA
GBM_A_T2--2	chr6:7574846	A	G	75	0.400	45	37.622	2.987	30	37.267	3.732	44	29	DSP	intronic	NA
GBM_A_T2--3	chr6:7574846	A	G	40	0.400	24	37.167	3.319	16	37.312	4.557	23	15	DSP	intronic	NA
GBM_A_T2--4	chr6:7574846	A	G	70	0.329	47	37.532	3.966	23	37.391	3.086	46	22	DSP	intronic	NA
GBM_A_T2--5	chr6:7574846	A	G	23	0.130	20	37.550	2.704	3	37.000	0.000	20	3	DSP	intronic	NA
GBM_A_T2--6	chr6:7574846	A	G	64	0.312	44	38.023	3.210	20	36.600	3.362	43	19	DSP	intronic	NA
GBM_A_T2--GL	chr6:7574846	A	NA	107	0	107	37.439	2.699	0	0	0	105	0	DSP	intronic	NA
GBM_A_T2--1	chr6:86203766	C	NA	121	0	121	37.810	2.962	0	0	0	118	0	NT5E	UTR3	NA
GBM_A_T2--2	chr6:86203766	C	A	170	0.012	168	37.536	2.899	2	37.000	0.000	163	2	NT5E	UTR3	NA
GBM_A_T2--3	chr6:86203766	C	NA	117	0	117	38.385	1.726	0	0	0	117	0	NT5E	UTR3	NA
GBM_A_T2--4	chr6:86203766	C	NA	136	0	136	38.051	2.034	0	0	0	136	0	NT5E	UTR3	NA
GBM_A_T2--5	chr6:86203766	C	A	36	0.139	31	38.548	1.524	5	38.200	1.643	31	5	NT5E	UTR3	NA
GBM_A_T2--6	chr6:86203766	C	NA	124	0	124	38.000	2.515	0	0	0	121	0	NT5E	UTR3	NA
GBM_A_T2--GL	chr6:86203766	C	NA	140	0	140	37.764	2.673	0	0	0	137	0	NT5E	UTR3	NA
GBM_A_T2--1	chr6:90371273	C	T	31	0.226	24	36.083	2.185	7	35.857	1.952	24	7	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr6:90371273	C	T	58	0.224	45	36.222	4.527	13	37.385	1.850	42	13	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr6:90371273	C	T	31	0.129	27	35.778	5.388	4	35.750	3.403	24	4	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr6:90371273	C	T	61	0.377	38	35.921	3.053	23	36.565	2.858	36	22	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr6:90371273	C	T	15	0.200	12	38.000	1.477	3	32.000	8.660	12	2	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr6:90371273	C	T	50	0.480	26	36.308	6.461	24	36.333	3.226	25	23	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr6:90371273	C	NA	58	0	58	36.828	3.067	0	0	0	56	0	MDN1	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr6:90403891	C	NA	56	0	56	37.821	4.191	0	0	0	53	0	MDN1	exonic	synonymous_SNV
GBM_A_T2--2	chr6:90403891	C	NA	94	0	94	36.691	5.275	0	0	0	88	0	MDN1	exonic	synonymous_SNV
GBM_A_T2--3	chr6:90403891	C	NA	48	0	48	37.875	2.765	0	0	0	47	0	MDN1	exonic	synonymous_SNV
GBM_A_T2--4	chr6:90403891	C	NA	98	0	98	37.959	2.071	0	0	0	98	0	MDN1	exonic	synonymous_SNV
GBM_A_T2--5	chr6:90403891	C	A	16	0.188	13	38.000	2.614	3	36.667	3.512	13	3	MDN1	exonic	synonymous_SNV
GBM_A_T2--6	chr6:90403891	C	A	85	0.012	84	37.833	2.828	1	40.000	0.000	82	1	MDN1	exonic	synonymous_SNV
GBM_A_T2--GL	chr6:90403891	C	NA	106	0	105	38.362	2.034	0	0	0	105	0	MDN1	exonic	synonymous_SNV
GBM_A_T2--1	chr7:100377173	C	T	18	0.278	13	36.846	2.035	5	34.600	2.191	13	5	ZAN	exonic	unknown
GBM_A_T2--2	chr7:100377173	C	T	78	0.218	61	36.230	4.613	17	36.588	3.447	58	16	ZAN	exonic	unknown
GBM_A_T2--3	chr7:100377173	C	T	39	0.077	36	35.917	3.644	3	29.667	12.702	34	2	ZAN	exonic	unknown
GBM_A_T2--4	chr7:100377173	C	T	88	0.227	68	36.426	2.867	20	35.950	5.236	67	19	ZAN	exonic	unknown
GBM_A_T2--5	chr7:100377173	C	T	18	0.444	10	34.600	4.993	8	36.000	1.852	9	8	ZAN	exonic	unknown
GBM_A_T2--6	chr7:100377173	C	T	70	0.271	51	35.863	4.123	19	36.105	3.125	48	18	ZAN	exonic	unknown
GBM_A_T2--GL	chr7:100377173	C	NA	83	0	83	36.747	4.507	0	0	0	80	0	ZAN	exonic	unknown
GBM_A_T2--1	chr7:100651929	C	NA	44	0	44	37.273	3.371	0	0	0	42	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:100651929	C	NA	86	0	86	36.023	4.015	0	0	0	80	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:100651929	C	NA	44	0	44	37.364	2.997	0	0	0	42	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:100651929	C	NA	77	0	76	36.855	3.683	0	0	0	72	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:100651929	C	A	18	0.167	15	37.533	1.846	3	37.667	4.041	15	3	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:100651929	C	NA	73	0	73	36.822	3.784	0	0	0	71	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:100651929	C	NA	71	0	71	37.000	3.140	0	0	0	70	0	MUC12	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr7:100685344	C	NA	29	0	29	37.345	3.638	0	0	0	27	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--2	chr7:100685344	C	NA	55	0	55	37.109	3.957	0	0	0	51	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--3	chr7:100685344	C	NA	22	0	22	38.000	3.101	0	0	0	21	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--4	chr7:100685344	C	NA	63	0	63	36.873	3.035	0	0	0	61	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--5	chr7:100685344	C	A	14	0.214	11	36.455	5.165	3	34.333	2.309	9	3	MUC17	exonic	synonymous_SNV
GBM_A_T2--6	chr7:100685344	C	NA	56	0	56	37.250	3.370	0	0	0	53	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--GL	chr7:100685344	C	NA	71	0	71	37.085	4.108	0	0	0	67	0	MUC17	exonic	synonymous_SNV
GBM_A_T2--1	chr7:128557353	G	NA	27	0	27	36.148	6.181	0	0	0	26	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--2	chr7:128557353	G	NA	49	0	49	36.224	4.506	0	0	0	46	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--3	chr7:128557353	G	T	23	0.174	19	37.316	2.358	4	36.000	2.000	19	4	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--4	chr7:128557353	G	NA	42	0	42	36.595	2.931	0	0	0	41	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--5	chr7:128557353	G	NA	15	0	15	36.733	4.652	0	0	0	13	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--6	chr7:128557353	G	NA	43	0	43	37.140	2.615	0	0	0	42	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--GL	chr7:128557353	G	NA	45	0	44	37.136	2.584	0	0	0	43	0	KCP(dist=6580),IRF5(dist=20641)	intergenic	NA
GBM_A_T2--1	chr7:150389855	C	T	66	0.303	46	35.435	5.856	20	35.850	4.682	40	18	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:150389855	C	T	108	0.287	77	37.052	3.056	31	36.419	4.925	74	29	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:150389855	C	T	106	0.377	66	36.742	4.351	40	36.375	3.499	63	38	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:150389855	C	T	114	0.325	77	36.818	4.119	37	36.054	3.636	76	34	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:150389855	C	T	51	0.216	40	36.300	3.451	11	37.545	1.214	38	11	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:150389855	C	T	108	0.296	76	36.974	2.805	32	37.250	2.079	74	32	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:150389855	C	NA	101	0	101	37.475	2.795	0	0	0	97	0	GIMAP2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr7:151199656	A	NA	47	0	47	38.638	1.699	0	0	0	47	0	RHEB	intronic	NA
GBM_A_T2--2	chr7:151199656	A	NA	73	0	73	38.151	3.108	0	0	0	71	0	RHEB	intronic	NA
GBM_A_T2--3	chr7:151199656	A	NA	49	0	49	38.571	2.151	0	0	0	49	0	RHEB	intronic	NA
GBM_A_T2--4	chr7:151199656	A	G	74	0.027	72	38.014	2.335	2	38.500	2.121	71	2	RHEB	intronic	NA
GBM_A_T2--5	chr7:151199656	A	G	12	0.250	9	38.556	2.455	3	37.667	4.041	9	3	RHEB	intronic	NA
GBM_A_T2--6	chr7:151199656	A	NA	77	0	77	38.338	2.280	0	0	0	77	0	RHEB	intronic	NA
GBM_A_T2--GL	chr7:151199656	A	NA	61	0	61	37.852	5.108	0	0	0	58	0	RHEB	intronic	NA
GBM_A_T2--1	chr7:1886850	C	NA	26	0	26	37.385	3.275	0	0	0	25	0	MAD1L1	intronic	NA
GBM_A_T2--2	chr7:1886850	C	A	32	0.031	31	37.355	3.392	1	40.000	0.000	29	1	MAD1L1	intronic	NA
GBM_A_T2--3	chr7:1886850	C	NA	28	0	28	37.393	2.998	0	0	0	27	0	MAD1L1	intronic	NA
GBM_A_T2--4	chr7:1886850	C	NA	37	0	37	38.432	2.328	0	0	0	37	0	MAD1L1	intronic	NA
GBM_A_T2--5	chr7:1886850	C	A	15	0.200	12	37.000	2.763	3	35.667	2.309	12	3	MAD1L1	intronic	NA
GBM_A_T2--6	chr7:1886850	C	NA	29	0	29	37.690	3.048	0	0	0	28	0	MAD1L1	intronic	NA
GBM_A_T2--GL	chr7:1886850	C	NA	34	0	34	37.147	2.524	0	0	0	34	0	MAD1L1	intronic	NA
GBM_A_T2--1	chr7:20042381	C	T	122	0.115	108	37.065	2.878	14	36.214	2.751	105	14	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--2	chr7:20042381	C	T	164	0.159	138	36.797	4.051	26	36.577	3.501	131	24	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--3	chr7:20042381	C	T	188	0.239	143	37.238	2.943	45	36.867	5.168	139	44	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--4	chr7:20042381	C	T	161	0.180	132	36.712	4.164	29	37.483	2.293	128	29	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--5	chr7:20042381	C	T	69	0.203	55	37.909	2.003	14	38.500	1.557	55	14	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--6	chr7:20042381	C	T	136	0.243	103	37.369	3.032	33	36.970	3.877	100	31	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--GL	chr7:20042381	C	NA	125	0	125	37.152	3.529	0	0	0	120	0	AC005062.2	ncRNA_intronic	NA
GBM_A_T2--1	chr7:32958028	C	NA	26	0	26	36.885	3.713	0	0	0	25	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--2	chr7:32958028	C	NA	38	0	38	37.105	2.618	0	0	0	37	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--3	chr7:32958028	C	NA	33	0	33	36.909	3.660	0	0	0	32	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--4	chr7:32958028	C	NA	44	0	44	36.523	2.913	0	0	0	43	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--5	chr7:32958028	C	NA	26	0	26	36.154	3.552	0	0	0	24	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--6	chr7:32958028	C	A	28	0.143	24	36.292	2.645	4	37.750	1.500	24	4	RP9P	ncRNA_intronic	NA
GBM_A_T2--GL	chr7:32958028	C	NA	50	0	50	36.300	3.699	0	0	0	46	0	RP9P	ncRNA_intronic	NA
GBM_A_T2--1	chr7:36580045	C	T	51	0.039	49	38.347	2.810	2	40.000	0.000	48	2	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:36580045	C	T	81	0.185	66	37.758	3.989	15	37.467	3.543	63	14	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:36580045	C	T	61	0.098	55	37.909	2.730	6	38.333	2.875	54	6	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:36580045	C	T	66	0.318	45	37.956	2.276	21	38.333	2.266	45	21	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:36580045	C	T	30	0.200	24	37.667	2.777	6	38.500	1.643	24	6	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:36580045	C	T	55	0.127	47	37.809	3.949	7	38.571	2.699	46	7	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:36580045	C	NA	57	0	57	38.035	2.360	0	0	0	57	0	AOAH	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr7:44796136	C	A	26	0.154	22	35.000	4.231	4	37.000	0.000	20	4	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:44796136	C	NA	42	0	42	36.167	2.594	0	0	0	41	0	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:44796136	C	NA	12	0	12	36.167	2.887	0	0	0	11	0	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:44796136	C	A	54	0.037	52	36.673	3.252	2	38.500	2.121	50	2	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:44796136	C	NA	13	0	13	36.538	2.295	0	0	0	13	0	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:44796136	C	NA	35	0	35	35.829	4.462	0	0	0	33	0	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:44796136	C	NA	67	0	67	35.239	4.613	0	0	0	62	0	ZMIZ2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr7:45124816	C	NA	24	0	24	37.000	3.426	0	0	0	23	0	NACAD	exonic	synonymous_SNV
GBM_A_T2--2	chr7:45124816	C	NA	75	0	75	36.080	3.787	0	0	0	71	0	NACAD	exonic	synonymous_SNV
GBM_A_T2--3	chr7:45124816	C	NA	37	0	37	36.730	3.115	0	0	0	36	0	NACAD	exonic	synonymous_SNV
GBM_A_T2--4	chr7:45124816	C	A	62	0.016	61	36.803	2.522	1	37.000	0.000	61	1	NACAD	exonic	synonymous_SNV
GBM_A_T2--5	chr7:45124816	C	A	12	0.250	9	38.222	2.438	3	38.000	1.732	9	3	NACAD	exonic	synonymous_SNV
GBM_A_T2--6	chr7:45124816	C	A	45	0.022	44	36.432	3.618	1	37.000	0.000	42	1	NACAD	exonic	synonymous_SNV
GBM_A_T2--GL	chr7:45124816	C	NA	45	0	45	35.533	4.093	0	0	0	39	0	NACAD	exonic	synonymous_SNV
GBM_A_T2--1	chr7:48335416	C	NA	26	0	26	35.269	3.001	0	0	0	25	0	ABCA13	exonic	synonymous_SNV
GBM_A_T2--2	chr7:48335416	C	NA	66	0	66	34.318	3.320	0	0	0	59	0	ABCA13	exonic	synonymous_SNV
GBM_A_T2--3	chr7:48335416	C	NA	31	0	30	34.900	3.231	0	0	0	28	0	ABCA13	exonic	synonymous_SNV
GBM_A_T2--4	chr7:48335416	C	NA	46	0	45	33.267	5.960	0	0	0	40	0	ABCA13	exonic	synonymous_SNV
GBM_A_T2--5	chr7:48335416	C	T	17	0.176	14	31.286	9.918	3	36.667	3.512	10	3	ABCA13	exonic	synonymous_SNV
GBM_A_T2--6	chr7:48335416	C	T	44	0.023	43	35.047	4.451	1	33.000	0.000	39	1	ABCA13	exonic	synonymous_SNV
GBM_A_T2--GL	chr7:48335416	C	NA	54	0	54	32.241	8.438	0	0	0	40	0	ABCA13	exonic	synonymous_SNV
GBM_A_T2--1	chr7:55223604	G	T	1074	0.250	806	34.984	5.183	268	34.739	5.774	704	231	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:55223604	G	T	2218	0.069	2065	34.877	5.372	152	34.211	6.433	1794	132	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:55223604	G	T	1506	0.056	1421	34.897	5.566	84	35.560	4.870	1234	77	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:55223604	G	NA	3471	0	3464	35.043	5.057	0	0	0	3038	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:55223604	G	T	1093	0.003	1090	34.991	5.273	3	35.667	2.309	945	3	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:55223604	G	NA	2598	0	2592	35.098	5.408	0	0	0	2281	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:55223604	G	NA	178	0	178	35.230	4.887	0	0	0	163	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr7:5967765	G	NA	22	0	22	36.727	4.463	0	0	0	21	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--2	chr7:5967765	G	NA	51	0	51	37.471	3.749	0	0	0	48	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--3	chr7:5967765	G	NA	21	0	21	37.048	5.766	0	0	0	20	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--4	chr7:5967765	G	NA	71	0	71	37.451	3.624	0	0	0	68	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--5	chr7:5967765	G	T	15	0.200	12	36.583	7.141	3	39.000	1.732	11	3	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--6	chr7:5967765	G	NA	54	0	54	37.037	4.975	0	0	0	53	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--GL	chr7:5967765	G	NA	88	0	88	37.670	3.728	0	0	0	86	0	RSPH10B,RSPH10B2	intronic	NA
GBM_A_T2--1	chr7:83014831	C	A	52	0.019	51	37.471	2.880	1	40.000	0.000	50	1	SEMA3E	intronic	NA
GBM_A_T2--2	chr7:83014831	C	A	84	0.024	82	37.817	4.275	2	36.500	4.950	81	2	SEMA3E	intronic	NA
GBM_A_T2--3	chr7:83014831	C	NA	75	0	75	37.560	2.484	0	0	0	74	0	SEMA3E	intronic	NA
GBM_A_T2--4	chr7:83014831	C	NA	80	0	79	37.620	2.984	0	0	0	78	0	SEMA3E	intronic	NA
GBM_A_T2--5	chr7:83014831	C	A	17	0.176	14	36.643	4.877	3	37.667	4.041	13	3	SEMA3E	intronic	NA
GBM_A_T2--6	chr7:83014831	C	NA	62	0	61	37.279	3.980	0	0	0	59	0	SEMA3E	intronic	NA
GBM_A_T2--GL	chr7:83014831	C	NA	63	0	63	37.889	2.534	0	0	0	63	0	SEMA3E	intronic	NA
GBM_A_T2--1	chr7:87092158	C	T	92	0.196	74	37.905	2.478	18	39.000	1.455	74	18	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr7:87092158	C	T	209	0.282	150	37.407	2.575	59	37.780	2.717	149	58	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr7:87092158	C	T	157	0.287	111	37.090	4.377	45	38.089	2.304	106	45	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr7:87092158	C	T	129	0.248	97	37.124	5.098	32	37.062	3.131	91	31	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr7:87092158	C	T	42	0.190	34	37.971	2.769	8	38.000	2.507	33	8	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr7:87092158	C	T	99	0.303	68	37.279	3.737	30	38.000	2.228	64	30	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr7:87092158	C	NA	100	0	100	37.890	2.361	0	0	0	100	0	ABCB4	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr8:113243917	C	NA	55	0	55	37.473	3.426	0	0	0	53	0	CSMD3	intronic	NA
GBM_A_T2--2	chr8:113243917	C	NA	80	0	80	37.712	1.943	0	0	0	80	0	CSMD3	intronic	NA
GBM_A_T2--3	chr8:113243917	C	NA	68	0	68	37.397	3.369	0	0	0	67	0	CSMD3	intronic	NA
GBM_A_T2--4	chr8:113243917	C	NA	104	0	104	37.096	3.855	0	0	0	103	0	CSMD3	intronic	NA
GBM_A_T2--5	chr8:113243917	C	A	14	0.214	11	34.364	8.274	3	38.000	1.732	9	3	CSMD3	intronic	NA
GBM_A_T2--6	chr8:113243917	C	NA	65	0	65	37.046	3.145	0	0	0	63	0	CSMD3	intronic	NA
GBM_A_T2--GL	chr8:113243917	C	NA	77	0	77	36.818	3.790	0	0	0	73	0	CSMD3	intronic	NA
GBM_A_T2--1	chr8:118535713	C	NA	34	0	34	37.382	1.652	0	0	0	34	0	MED30	intronic	NA
GBM_A_T2--2	chr8:118535713	C	NA	87	0	87	36.609	3.479	0	0	0	85	0	MED30	intronic	NA
GBM_A_T2--3	chr8:118535713	C	NA	47	0	47	36.298	4.000	0	0	0	46	0	MED30	intronic	NA
GBM_A_T2--4	chr8:118535713	C	NA	69	0	69	36.594	3.305	0	0	0	66	0	MED30	intronic	NA
GBM_A_T2--5	chr8:118535713	C	A	15	0.200	12	38.250	1.545	3	39.000	1.732	12	3	MED30	intronic	NA
GBM_A_T2--6	chr8:118535713	C	NA	66	0	66	37.333	2.433	0	0	0	65	0	MED30	intronic	NA
GBM_A_T2--GL	chr8:118535713	C	NA	72	0	72	35.889	3.706	0	0	0	68	0	MED30	intronic	NA
GBM_A_T2--1	chr8:145725590	C	NA	17	0	17	32.765	6.428	0	0	0	12	0	PPP1R16A	intronic	NA
GBM_A_T2--2	chr8:145725590	C	NA	19	0	19	34.947	4.365	0	0	0	17	0	PPP1R16A	intronic	NA
GBM_A_T2--3	chr8:145725590	C	NA	16	0	16	32.562	5.910	0	0	0	12	0	PPP1R16A	intronic	NA
GBM_A_T2--4	chr8:145725590	C	A	39	0.051	37	35.459	3.263	2	33.000	0.000	34	2	PPP1R16A	intronic	NA
GBM_A_T2--5	chr8:145725590	C	A	17	0.176	14	35.214	4.492	3	36.667	3.512	13	3	PPP1R16A	intronic	NA
GBM_A_T2--6	chr8:145725590	C	NA	27	0	27	35.556	3.755	0	0	0	25	0	PPP1R16A	intronic	NA
GBM_A_T2--GL	chr8:145725590	C	NA	59	0	59	35.254	3.876	0	0	0	55	0	PPP1R16A	intronic	NA
GBM_A_T2--1	chr8:145746372	G	A	30	0.200	24	36.458	5.056	6	37.500	1.225	23	6	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr8:145746372	G	A	83	0.337	55	36.236	3.522	28	37.536	2.117	51	28	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr8:145746372	G	A	27	0.148	23	36.652	3.128	4	38.500	1.732	22	4	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr8:145746372	G	A	84	0.393	51	37.137	2.209	33	37.152	1.986	51	33	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr8:145746372	G	A	22	0.227	17	36.529	3.659	5	38.200	1.643	16	5	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr8:145746372	G	A	86	0.477	45	37.422	2.572	41	37.415	1.975	44	41	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr8:145746372	G	NA	112	0	112	37.000	3.263	0	0	0	107	0	LRRC14	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr8:2050453	C	NA	25	0	25	36.680	2.996	0	0	0	24	0	MYOM2	intronic	NA
GBM_A_T2--2	chr8:2050453	C	NA	43	0	43	38.093	1.674	0	0	0	43	0	MYOM2	intronic	NA
GBM_A_T2--3	chr8:2050453	C	NA	18	0	18	37.722	2.244	0	0	0	18	0	MYOM2	intronic	NA
GBM_A_T2--4	chr8:2050453	C	NA	35	0	35	37.229	4.722	0	0	0	33	0	MYOM2	intronic	NA
GBM_A_T2--5	chr8:2050453	C	A	15	0.200	12	38.167	2.209	3	40.000	0.000	12	3	MYOM2	intronic	NA
GBM_A_T2--6	chr8:2050453	C	NA	25	0	25	37.640	1.977	0	0	0	25	0	MYOM2	intronic	NA
GBM_A_T2--GL	chr8:2050453	C	NA	35	0	35	37.114	3.924	0	0	0	33	0	MYOM2	intronic	NA
GBM_A_T2--1	chr8:23177435	C	NA	24	0	24	36.958	2.177	0	0	0	24	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr8:23177435	C	NA	43	0	43	35.233	5.415	0	0	0	40	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr8:23177435	C	NA	28	0	28	36.893	4.067	0	0	0	26	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr8:23177435	C	NA	31	0	31	37.161	2.051	0	0	0	31	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr8:23177435	C	A	16	0.188	13	31.692	10.185	3	36.667	3.512	10	3	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr8:23177435	C	NA	41	0	41	36.049	5.343	0	0	0	39	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr8:23177435	C	NA	49	0	49	35.143	4.093	0	0	0	42	0	LOXL2	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr8:28013466	C	NA	33	0	33	38.788	1.763	0	0	0	33	0	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr8:28013466	C	NA	67	0	67	38.149	1.964	0	0	0	67	0	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr8:28013466	C	A	26	0.154	22	37.682	2.378	4	37.750	1.500	22	4	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr8:28013466	C	NA	78	0	78	38.244	2.008	0	0	0	78	0	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr8:28013466	C	NA	36	0	36	37.806	3.293	0	0	0	34	0	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr8:28013466	C	A	71	0.014	70	38.429	2.075	1	37.000	0.000	70	1	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr8:28013466	C	NA	83	0	83	37.639	3.684	0	0	0	81	0	ELP3	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr9:124922163	C	NA	20	0	20	37.700	1.780	0	0	0	20	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--2	chr9:124922163	C	NA	46	0	46	36.457	2.631	0	0	0	44	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--3	chr9:124922163	C	NA	20	0	20	36.500	3.069	0	0	0	19	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--4	chr9:124922163	C	NA	39	0	39	35.205	4.456	0	0	0	36	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--5	chr9:124922163	C	A	11	0.273	8	35.000	5.581	3	36.667	3.512	7	3	MORN5,NDUFA8	upstream	NA
GBM_A_T2--6	chr9:124922163	C	NA	34	0	34	34.765	5.158	0	0	0	30	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--GL	chr9:124922163	C	NA	57	0	57	35.754	2.874	0	0	0	55	0	MORN5,NDUFA8	upstream	NA
GBM_A_T2--1	chr9:139094670	C	NA	23	0	23	35.957	2.804	0	0	0	22	0	LHX3	intronic	NA
GBM_A_T2--2	chr9:139094670	C	NA	42	0	42	34.500	6.744	0	0	0	37	0	LHX3	intronic	NA
GBM_A_T2--3	chr9:139094670	C	A	14	0.214	11	36.818	2.228	3	35.667	2.309	11	3	LHX3	intronic	NA
GBM_A_T2--4	chr9:139094670	C	NA	35	0	35	36.057	2.566	0	0	0	34	0	LHX3	intronic	NA
GBM_A_T2--5	chr9:139094670	C	NA	11	0	11	33.000	5.532	0	0	0	8	0	LHX3	intronic	NA
GBM_A_T2--6	chr9:139094670	C	NA	33	0	33	37.212	1.536	0	0	0	33	0	LHX3	intronic	NA
GBM_A_T2--GL	chr9:139094670	C	NA	41	0	41	36.902	2.672	0	0	0	40	0	LHX3	intronic	NA
GBM_A_T2--1	chr9:139289237	G	NA	27	0	27	36.778	3.105	0	0	0	26	0	SNAPC4	intronic	NA
GBM_A_T2--2	chr9:139289237	G	NA	33	0	33	36.212	1.980	0	0	0	33	0	SNAPC4	intronic	NA
GBM_A_T2--3	chr9:139289237	G	NA	24	0	24	36.083	3.694	0	0	0	22	0	SNAPC4	intronic	NA
GBM_A_T2--4	chr9:139289237	G	NA	30	0	30	36.867	3.235	0	0	0	28	0	SNAPC4	intronic	NA
GBM_A_T2--5	chr9:139289237	G	A	10	0.300	7	37.857	1.464	3	35.667	2.309	7	3	SNAPC4	intronic	NA
GBM_A_T2--6	chr9:139289237	G	NA	40	0	40	35.300	3.804	0	0	0	36	0	SNAPC4	intronic	NA
GBM_A_T2--GL	chr9:139289237	G	NA	36	0	36	37.028	2.021	0	0	0	36	0	SNAPC4	intronic	NA
GBM_A_T2--1	chr9:139690925	C	NA	14	0	14	32.857	8.365	0	0	0	12	0	CCDC183	intronic	NA
GBM_A_T2--2	chr9:139690925	C	NA	25	0	25	35.000	4.787	0	0	0	21	0	CCDC183	intronic	NA
GBM_A_T2--3	chr9:139690925	C	NA	12	0	12	35.250	4.808	0	0	0	11	0	CCDC183	intronic	NA
GBM_A_T2--4	chr9:139690925	C	NA	40	0	40	36.300	3.451	0	0	0	38	0	CCDC183	intronic	NA
GBM_A_T2--5	chr9:139690925	C	A	17	0.176	14	37.857	1.406	3	38.000	1.732	14	3	CCDC183	intronic	NA
GBM_A_T2--6	chr9:139690925	C	NA	41	0	41	37.390	2.132	0	0	0	41	0	CCDC183	intronic	NA
GBM_A_T2--GL	chr9:139690925	C	NA	42	0	42	35.929	4.057	0	0	0	41	0	CCDC183	intronic	NA
GBM_A_T2--1	chr9:140972569	C	NA	13	0	13	38.231	2.651	0	0	0	13	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr9:140972569	C	NA	31	0	31	37.032	2.858	0	0	0	30	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr9:140972569	C	NA	22	0	22	35.818	4.382	0	0	0	20	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr9:140972569	C	NA	33	0	33	36.303	4.883	0	0	0	31	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr9:140972569	C	A	12	0.250	9	34.667	5.500	3	36.667	3.512	8	3	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr9:140972569	C	NA	24	0	24	37.417	3.525	0	0	0	22	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr9:140972569	C	NA	43	0	43	36.488	5.221	0	0	0	42	0	CACNA1B	exonic	nonsynonymous_SNV
GBM_A_T2--1	chr9:69416279	A	G	33	0.273	24	36.958	3.581	9	36.111	3.689	23	9	ANKRD20A4	intronic	NA
GBM_A_T2--2	chr9:69416279	A	G	63	0.286	45	37.378	2.716	18	36.056	3.038	45	18	ANKRD20A4	intronic	NA
GBM_A_T2--3	chr9:69416279	A	G	36	0.333	24	38.250	2.436	12	35.417	3.147	24	12	ANKRD20A4	intronic	NA
GBM_A_T2--4	chr9:69416279	A	G	51	0.431	29	37.069	3.195	22	35.545	5.796	29	20	ANKRD20A4	intronic	NA
GBM_A_T2--5	chr9:69416279	A	G	18	0.278	13	38.692	2.658	5	35.600	4.980	13	4	ANKRD20A4	intronic	NA
GBM_A_T2--6	chr9:69416279	A	G	42	0.310	29	38.310	2.509	13	36.846	3.338	29	13	ANKRD20A4	intronic	NA
GBM_A_T2--GL	chr9:69416279	A	NA	52	0	52	37.077	2.875	0	0	0	51	0	ANKRD20A4	intronic	NA
GBM_A_T2--1	chr9:79323861	T	A	34	0.176	28	35.536	4.963	6	36.167	2.714	26	6	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--2	chr9:79323861	T	A	83	0.265	61	36.344	3.396	22	37.182	3.473	58	21	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--3	chr9:79323861	T	A	51	0.333	34	34.971	5.595	17	37.235	4.116	32	15	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--4	chr9:79323861	T	A	124	0.371	78	35.744	5.046	46	37.109	2.968	75	45	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--5	chr9:79323861	T	A	23	0.435	13	33.538	9.527	10	35.400	2.066	11	10	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--6	chr9:79323861	T	A	88	0.398	53	36.434	2.825	35	36.086	3.373	52	33	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T2--GL	chr9:79323861	T	NA	108	0	108	35.833	4.179	0	0	0	101	0	PRUNE2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr10:124183691	T	NA	53	0	52	34.846	7.025	0	0	0	45	0	PLEKHA1	intronic	NA
GBM_A_T3--2	chr10:124183691	T	C	27	0.222	21	35.190	6.194	6	37.167	3.430	18	6	PLEKHA1	intronic	NA
GBM_A_T3--3	chr10:124183691	T	C	21	0.238	16	36.312	5.082	5	29.800	13.627	14	4	PLEKHA1	intronic	NA
GBM_A_T3--4	chr10:124183691	T	NA	37	0	37	35.324	5.774	0	0	0	32	0	PLEKHA1	intronic	NA
GBM_A_T3--5	chr10:124183691	T	C	33	0.152	27	36.259	4.101	5	38.000	3.082	25	5	PLEKHA1	intronic	NA
GBM_A_T3--6	chr10:124183691	T	C	48	0.250	36	36.972	2.348	12	35.833	7.518	36	10	PLEKHA1	intronic	NA
GBM_A_T3--7	chr10:124183691	T	C	14	0.071	13	36.462	2.696	1	37.000	0.000	13	1	PLEKHA1	intronic	NA
GBM_A_T3--GL	chr10:124183691	T	NA	81	0	81	36.383	3.604	0	0	0	77	0	PLEKHA1	intronic	NA
GBM_A_T3--1	chr10:47087490	G	A	95	0.053	90	36.156	3.522	5	32.800	5.848	84	3	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr10:47087490	G	A	78	0.167	65	35.969	4.127	13	32.846	7.128	61	9	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr10:47087490	G	NA	116	0	116	35.638	4.650	0	0	0	106	0	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr10:47087490	G	A	91	0.143	78	35.244	6.056	13	36.308	2.057	70	13	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr10:47087490	G	A	62	0.113	55	34.873	6.498	7	39.143	1.464	49	7	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr10:47087490	G	NA	110	0	110	35.491	5.396	0	0	0	99	0	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr10:47087490	G	NA	138	0	138	35.964	3.893	0	0	0	129	0	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr10:47087490	G	NA	56	0	56	35.464	5.288	0	0	0	50	0	LOC100996758,NPY4R	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr10:61829929	C	NA	70	0	69	34.942	6.238	0	0	0	61	0	ANK3	exonic	synonymous_SNV
GBM_A_T3--2	chr10:61829929	C	NA	51	0	51	35.529	5.266	0	0	0	44	0	ANK3	exonic	synonymous_SNV
GBM_A_T3--3	chr10:61829929	C	T	25	0.040	24	35.875	4.317	1	37.000	0.000	22	1	ANK3	exonic	synonymous_SNV
GBM_A_T3--4	chr10:61829929	C	NA	55	0	55	36.545	2.930	0	0	0	54	0	ANK3	exonic	synonymous_SNV
GBM_A_T3--5	chr10:61829929	C	NA	47	0	46	35.435	4.183	0	0	0	40	0	ANK3	exonic	synonymous_SNV
GBM_A_T3--6	chr10:61829929	C	T	63	0.016	62	35.903	3.602	1	40.000	0.000	57	1	ANK3	exonic	synonymous_SNV
GBM_A_T3--7	chr10:61829929	C	T	47	0.213	37	36.730	2.715	10	36.500	2.068	36	10	ANK3	exonic	synonymous_SNV
GBM_A_T3--GL	chr10:61829929	C	NA	77	0	77	36.130	4.115	0	0	0	72	0	ANK3	exonic	synonymous_SNV
GBM_A_T3--1	chr1:112318775	G	NA	151	0	151	32.656	6.819	0	0	0	115	0	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr1:112318775	G	NA	116	0	116	31.578	7.874	0	0	0	82	0	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr1:112318775	G	A	158	0.038	152	31.684	6.988	6	33.833	6.014	108	5	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr1:112318775	G	NA	169	0	168	32.952	6.854	0	0	0	127	0	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr1:112318775	G	NA	125	0	125	31.672	6.692	0	0	0	87	0	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr1:112318775	G	A	164	0.055	155	32.168	6.477	9	31.667	6.384	108	6	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr1:112318775	G	A	163	0.160	137	32.861	6.647	26	34.192	5.299	101	21	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr1:112318775	G	NA	133	0	133	32.023	8.180	0	0	0	94	0	KCND3	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr11:20939819	C	NA	27	0	27	37.444	2.764	0	0	0	27	0	NELL1	intronic	NA
GBM_A_T3--2	chr11:20939819	C	A	16	0.188	13	37.077	3.451	3	38.000	1.732	13	3	NELL1	intronic	NA
GBM_A_T3--3	chr11:20939819	C	NA	11	0	11	36.364	2.942	0	0	0	11	0	NELL1	intronic	NA
GBM_A_T3--4	chr11:20939819	C	NA	30	0	30	37.167	3.281	0	0	0	29	0	NELL1	intronic	NA
GBM_A_T3--5	chr11:20939819	C	NA	17	0	17	37.294	2.801	0	0	0	17	0	NELL1	intronic	NA
GBM_A_T3--6	chr11:20939819	C	NA	28	0	28	36.500	3.657	0	0	0	27	0	NELL1	intronic	NA
GBM_A_T3--7	chr11:20939819	C	NA	13	0	13	37.077	3.662	0	0	0	12	0	NELL1	intronic	NA
GBM_A_T3--GL	chr11:20939819	C	NA	33	0	33	36.515	3.734	0	0	0	30	0	NELL1	intronic	NA
GBM_A_T3--1	chr1:157718712	G	C	44	0.273	32	35.656	3.874	12	34.500	6.908	30	11	FCRL2	exonic	stopgain_SNV
GBM_A_T3--2	chr1:157718712	G	C	32	0.188	26	38.346	1.853	6	39.000	1.549	26	6	FCRL2	exonic	stopgain_SNV
GBM_A_T3--3	chr1:157718712	G	C	16	0.438	9	36.556	1.333	7	35.286	5.964	9	6	FCRL2	exonic	stopgain_SNV
GBM_A_T3--4	chr1:157718712	G	C	41	0.244	31	36.355	3.903	10	37.600	1.265	28	10	FCRL2	exonic	stopgain_SNV
GBM_A_T3--5	chr1:157718712	G	C	34	0.206	27	35.704	7.081	7	36.286	2.498	24	7	FCRL2	exonic	stopgain_SNV
GBM_A_T3--6	chr1:157718712	G	C	55	0.236	42	37.190	3.141	13	37.846	2.075	41	13	FCRL2	exonic	stopgain_SNV
GBM_A_T3--7	chr1:157718712	G	C	23	0.304	16	35.938	4.892	7	38.571	2.699	14	7	FCRL2	exonic	stopgain_SNV
GBM_A_T3--GL	chr1:157718712	G	NA	39	0	39	37.051	3.524	0	0	0	38	0	FCRL2	exonic	stopgain_SNV
GBM_A_T3--1	chr11:57971456	T	NA	139	0	139	36.964	3.821	0	0	0	132	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr11:57971456	T	C	81	0.074	75	37.387	2.193	6	37.000	0.000	75	6	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr11:57971456	T	C	60	0.167	50	37.140	3.731	10	37.300	0.949	49	10	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr11:57971456	T	C	156	0.013	154	36.805	4.005	2	37.000	0.000	143	2	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr11:57971456	T	C	111	0.018	109	36.725	4.420	2	37.000	0.000	103	2	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr11:57971456	T	NA	122	0	122	36.803	4.296	0	0	0	115	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr11:57971456	T	C	87	0.034	84	36.619	4.953	3	37.000	0.000	80	3	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr11:57971456	T	NA	78	0	78	36.897	3.588	0	0	0	76	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr11:57971457	A	NA	139	0	139	36.583	5.072	0	0	0	133	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr11:57971457	A	G	83	0.072	77	37.052	3.232	6	36.333	1.633	74	6	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr11:57971457	A	G	60	0.167	50	37.420	2.572	10	37.300	0.949	49	10	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr11:57971457	A	G	155	0.013	153	36.830	3.762	2	37.000	0.000	144	2	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr11:57971457	A	G	111	0.018	109	37.174	3.147	2	37.000	0.000	107	2	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr11:57971457	A	NA	123	0	123	36.585	4.441	0	0	0	115	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr11:57971457	A	G	87	0.034	84	37.333	2.416	3	37.000	0.000	83	3	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr11:57971457	A	NA	77	0	77	36.974	2.786	0	0	0	75	0	OR1S2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr11:57982413	C	T	152	0.007	151	36.305	4.632	1	37.000	0.000	142	1	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr11:57982413	C	NA	98	0	98	36.112	5.664	0	0	0	93	0	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr11:57982413	C	T	74	0.135	64	36.828	4.304	10	36.900	1.663	61	10	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr11:57982413	C	NA	148	0	147	37.048	3.236	0	0	0	141	0	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr11:57982413	C	T	105	0.038	100	36.690	3.614	4	37.000	0.000	94	4	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr11:57982413	C	NA	149	0	148	37.061	3.431	0	0	0	142	0	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr11:57982413	C	NA	88	0	88	36.682	3.816	0	0	0	84	0	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr11:57982413	C	NA	112	0	112	37.036	3.096	0	0	0	108	0	OR1S1	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr11:57982414	G	A	151	0.007	150	35.953	4.718	1	37.000	0.000	142	1	OR1S1	exonic	synonymous_SNV
GBM_A_T3--2	chr11:57982414	G	NA	96	0	95	36.116	5.381	0	0	0	89	0	OR1S1	exonic	synonymous_SNV
GBM_A_T3--3	chr11:57982414	G	A	72	0.139	61	37.131	2.540	10	36.900	1.663	61	10	OR1S1	exonic	synonymous_SNV
GBM_A_T3--4	chr11:57982414	G	NA	148	0	148	37.068	3.489	0	0	0	142	0	OR1S1	exonic	synonymous_SNV
GBM_A_T3--5	chr11:57982414	G	A	105	0.038	101	36.386	4.186	4	34.500	5.000	97	3	OR1S1	exonic	synonymous_SNV
GBM_A_T3--6	chr11:57982414	G	NA	146	0	146	37.075	3.518	0	0	0	143	0	OR1S1	exonic	synonymous_SNV
GBM_A_T3--7	chr11:57982414	G	NA	88	0	88	36.898	2.998	0	0	0	85	0	OR1S1	exonic	synonymous_SNV
GBM_A_T3--GL	chr11:57982414	G	NA	112	0	112	37.179	2.494	0	0	0	111	0	OR1S1	exonic	synonymous_SNV
GBM_A_T3--1	chr1:160181465	C	NA	43	0	43	34.651	4.755	0	0	0	38	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr1:160181465	C	A	25	0.160	21	36.143	3.167	4	35.250	5.679	20	3	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr1:160181465	C	NA	35	0	35	35.914	4.780	0	0	0	33	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr1:160181465	C	A	44	0.023	43	34.558	4.484	1	33.000	0.000	39	1	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr1:160181465	C	NA	35	0	35	34.686	4.078	0	0	0	31	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr1:160181465	C	NA	48	0	48	34.479	6.046	0	0	0	43	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr1:160181465	C	NA	40	0	40	34.200	7.054	0	0	0	33	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr1:160181465	C	NA	48	0	48	35.438	4.780	0	0	0	44	0	PEA15	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr1:183176986	G	T	94	0.170	75	21.973	11.154	16	30.875	9.885	20	14	LAMC2	intronic	NA
GBM_A_T3--2	chr1:183176986	G	T	50	0.160	41	22.927	10.253	8	25.500	14.041	13	5	LAMC2	intronic	NA
GBM_A_T3--3	chr1:183176986	G	T	71	0.183	57	21.632	11.106	13	29.000	11.740	16	10	LAMC2	intronic	NA
GBM_A_T3--4	chr1:183176986	G	T	99	0.172	79	21.646	10.778	17	26.941	14.029	25	12	LAMC2	intronic	NA
GBM_A_T3--5	chr1:183176986	G	T	64	0.156	51	19.549	10.333	10	28.100	12.485	11	7	LAMC2	intronic	NA
GBM_A_T3--6	chr1:183176986	G	T	69	0.174	55	22.145	10.617	12	24.083	15.963	14	7	LAMC2	intronic	NA
GBM_A_T3--7	chr1:183176986	G	T	64	0.156	54	23.481	10.392	10	29.200	12.372	15	8	LAMC2	intronic	NA
GBM_A_T3--GL	chr1:183176986	G	NA	52	0	49	24.531	11.424	0	0	0	19	0	LAMC2	intronic	NA
GBM_A_T3--1	chr11:86168801	C	A	29	0.034	28	32.036	7.026	1	37.000	0.000	20	1	ME3	intronic	NA
GBM_A_T3--2	chr11:86168801	C	NA	18	0	18	34.611	2.973	0	0	0	17	0	ME3	intronic	NA
GBM_A_T3--3	chr11:86168801	C	A	23	0.174	19	34.842	2.316	4	35.000	2.309	19	4	ME3	intronic	NA
GBM_A_T3--4	chr11:86168801	C	NA	29	0	29	31.621	6.837	0	0	0	19	0	ME3	intronic	NA
GBM_A_T3--5	chr11:86168801	C	NA	17	0	17	34.647	5.612	0	0	0	16	0	ME3	intronic	NA
GBM_A_T3--6	chr11:86168801	C	NA	34	0	34	33.059	7.075	0	0	0	29	0	ME3	intronic	NA
GBM_A_T3--7	chr11:86168801	C	NA	27	0	27	34.630	5.422	0	0	0	23	0	ME3	intronic	NA
GBM_A_T3--GL	chr11:86168801	C	NA	43	0	43	31.605	6.536	0	0	0	28	0	ME3	intronic	NA
GBM_A_T3--1	chr1:21083727	G	A	66	0.318	45	36.778	2.373	21	37.429	2.315	45	21	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--2	chr1:21083727	G	A	36	0.306	25	35.800	4.153	11	36.909	1.578	23	11	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--3	chr1:21083727	G	A	45	0.333	30	36.567	3.892	15	35.067	6.088	28	14	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--4	chr1:21083727	G	A	60	0.283	43	36.000	4.884	17	37.941	2.358	40	17	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--5	chr1:21083727	G	A	70	0.186	57	35.842	3.545	13	37.000	2.646	54	13	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--6	chr1:21083727	G	A	61	0.311	41	36.268	4.319	19	37.737	1.821	40	19	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--7	chr1:21083727	G	A	53	0.377	33	36.909	2.854	20	36.550	2.685	32	20	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--GL	chr1:21083727	G	NA	65	0	65	35.508	3.945	0	0	0	57	0	HP1BP3	exonic	synonymous_SNV
GBM_A_T3--1	chr12:109702186	A	G	43	0.302	30	36.033	5.366	13	35.538	3.045	27	13	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr12:109702186	A	G	26	0.269	19	35.842	7.625	7	35.714	2.752	18	7	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr12:109702186	A	G	46	0.413	27	36.519	4.023	19	34.684	5.926	26	16	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr12:109702186	A	G	37	0.405	22	38.227	1.510	15	36.133	4.357	22	13	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr12:109702186	A	G	30	0.367	19	36.842	2.035	11	36.091	4.182	19	10	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr12:109702186	A	G	37	0.162	31	36.903	3.477	6	36.833	2.229	29	6	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr12:109702186	A	G	43	0.419	25	36.280	2.909	18	35.944	4.893	24	16	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr12:109702186	A	NA	35	0	35	36.029	5.300	0	0	0	32	0	ACACB	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr12:110238470	C	G	99	0.091	90	35.033	4.784	9	35.556	5.480	82	8	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr12:110238470	C	NA	58	0	58	35.603	4.138	0	0	0	54	0	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr12:110238470	C	G	111	0.351	72	35.931	3.573	39	35.667	3.351	68	37	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr12:110238470	C	G	62	0.097	56	35.750	3.370	6	35.667	2.066	53	6	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr12:110238470	C	NA	57	0	57	34.842	5.710	0	0	0	51	0	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr12:110238470	C	G	81	0.185	66	35.939	4.224	15	34.933	4.832	62	13	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr12:110238470	C	G	90	0.233	69	36.203	3.042	21	35.190	4.643	66	18	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr12:110238470	C	NA	63	0	63	36.730	3.337	0	0	0	62	0	TRPV4	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr1:24125152	C	T	83	0.301	58	35.569	5.992	25	37.360	5.122	53	24	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr1:24125152	C	T	57	0.211	44	36.091	4.398	12	32.167	9.796	42	9	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr1:24125152	C	T	126	0.373	79	36.101	5.358	47	33.957	9.217	73	37	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr1:24125152	C	T	73	0.425	42	35.667	6.179	31	35.677	5.134	38	27	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr1:24125152	C	T	80	0.250	60	37.050	4.260	20	33.700	7.841	57	16	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr1:24125152	C	T	86	0.349	56	35.018	6.317	30	38.400	2.283	48	30	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr1:24125152	C	T	111	0.387	68	37.074	3.426	43	35.674	6.948	64	38	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr1:24125152	C	NA	50	0	50	36.320	3.862	0	0	0	46	0	GALE	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr12:42858084	T	NA	67	0	67	37.657	2.129	0	0	0	67	0	PRICKLE1	intronic	NA
GBM_A_T3--2	chr12:42858084	T	A	42	0.024	41	37.634	2.624	1	37.000	0.000	40	1	PRICKLE1	intronic	NA
GBM_A_T3--3	chr12:42858084	T	A	65	0.185	53	37.057	3.302	12	36.667	1.155	50	12	PRICKLE1	intronic	NA
GBM_A_T3--4	chr12:42858084	T	A	56	0.054	53	37.906	2.347	3	37.000	0.000	52	3	PRICKLE1	intronic	NA
GBM_A_T3--5	chr12:42858084	T	A	42	0.024	41	36.610	4.477	1	37.000	0.000	37	1	PRICKLE1	intronic	NA
GBM_A_T3--6	chr12:42858084	T	A	64	0.047	61	37.607	3.770	3	35.667	2.309	59	3	PRICKLE1	intronic	NA
GBM_A_T3--7	chr12:42858084	T	A	69	0.087	63	37.429	3.905	6	37.000	0.000	61	6	PRICKLE1	intronic	NA
GBM_A_T3--GL	chr12:42858084	T	NA	44	0	44	37.659	2.477	0	0	0	44	0	PRICKLE1	intronic	NA
GBM_A_T3--1	chr1:32265734	C	T	59	0.254	44	36.682	3.633	15	35.667	3.331	41	14	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--2	chr1:32265734	C	T	62	0.161	52	36.904	2.717	10	34.700	3.653	52	9	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--3	chr1:32265734	C	T	81	0.346	53	35.887	6.801	28	34.321	6.254	49	25	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--4	chr1:32265734	C	T	85	0.294	60	35.917	5.053	25	35.000	4.628	58	23	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--5	chr1:32265734	C	T	68	0.250	51	35.961	5.340	17	35.647	2.783	47	17	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--6	chr1:32265734	C	T	70	0.186	57	36.667	4.282	13	35.769	3.492	54	12	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--7	chr1:32265734	C	T	82	0.280	59	34.085	7.925	23	35.696	3.747	49	22	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--GL	chr1:32265734	C	NA	60	0	60	36.233	3.605	0	0	0	56	0	SPOCD1	exonic	synonymous_SNV
GBM_A_T3--1	chr13:49039094	C	T	38	0.184	28	34.393	10.333	7	27.286	6.726	24	3	RB1	intronic	NA
GBM_A_T3--2	chr13:49039094	C	T	20	0.200	16	35.188	8.991	4	25.500	7.550	14	1	RB1	intronic	NA
GBM_A_T3--3	chr13:49039094	C	T	27	0.222	21	37.571	2.378	6	32.667	3.204	21	5	RB1	intronic	NA
GBM_A_T3--4	chr13:49039094	C	NA	32	0	29	37.276	2.902	0	0	0	28	0	RB1	intronic	NA
GBM_A_T3--5	chr13:49039094	C	NA	25	0	21	36.952	3.248	0	0	0	20	0	RB1	intronic	NA
GBM_A_T3--6	chr13:49039094	C	T	35	0.229	27	36.593	7.110	8	24.625	10.239	25	4	RB1	intronic	NA
GBM_A_T3--7	chr13:49039094	C	NA	13	0	9	37.778	2.991	0	0	0	9	0	RB1	intronic	NA
GBM_A_T3--GL	chr13:49039094	C	NA	68	0	55	36.945	5.191	0	0	0	53	0	RB1	intronic	NA
GBM_A_T3--1	chr14:19890123	G	A	107	0.084	97	35.093	4.841	9	35.111	7.865	88	8	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--2	chr14:19890123	G	A	71	0.155	60	33.233	5.372	11	33.091	6.488	50	10	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--3	chr14:19890123	G	A	92	0.196	74	33.892	5.785	18	32.500	7.649	64	13	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--4	chr14:19890123	G	A	74	0.162	62	34.500	5.117	12	35.250	2.491	55	12	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--5	chr14:19890123	G	A	71	0.099	64	35.016	4.142	7	32.143	7.819	59	6	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--6	chr14:19890123	G	A	90	0.100	81	34.037	6.541	9	32.000	8.789	68	6	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--7	chr14:19890123	G	A	86	0.279	62	34.871	3.932	24	35.250	4.386	56	21	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--GL	chr14:19890123	G	NA	100	0	100	34.950	4.293	0	0	0	92	0	DUXAP10	ncRNA_intronic	NA
GBM_A_T3--1	chr14:50788213	C	NA	43	0	43	35.814	5.351	0	0	0	39	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr14:50788213	C	NA	21	0	21	35.381	5.064	0	0	0	18	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr14:50788213	C	NA	24	0	24	35.417	4.772	0	0	0	21	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr14:50788213	C	NA	28	0	28	37.393	3.478	0	0	0	27	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr14:50788213	C	T	26	0.154	22	37.773	2.671	4	36.000	2.000	22	4	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr14:50788213	C	NA	31	0	31	35.484	4.358	0	0	0	28	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr14:50788213	C	T	25	0.080	23	33.957	7.087	2	40.000	0.000	19	2	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr14:50788213	C	NA	37	0	37	37.865	2.238	0	0	0	37	0	ATP5S	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr14:64685822	G	NA	59	0	41	35.537	6.622	0	0	0	36	0	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--2	chr14:64685822	G	T	43	0.442	23	35.304	4.567	19	36.684	4.922	20	17	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--3	chr14:64685822	G	T	46	0.152	39	36.590	5.780	7	37.286	2.360	37	7	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--4	chr14:64685822	G	T	48	0.250	34	36.412	3.577	12	36.250	3.720	33	11	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--5	chr14:64685822	G	T	44	0.295	29	34.897	5.334	13	35.615	5.606	25	11	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--6	chr14:64685822	G	T	52	0.212	40	36.725	4.267	11	37.091	4.011	39	10	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--7	chr14:64685822	G	T	41	0.195	33	37.061	3.913	8	37.125	2.900	31	8	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--GL	chr14:64685822	G	NA	80	0	39	35.000	5.605	0	0	0	35	0	MIR548AZ	ncRNA_intronic	NA
GBM_A_T3--1	chr14:81646730	C	NA	46	0	46	37.478	5.460	0	0	0	43	0	GTF2A1	intronic	NA
GBM_A_T3--2	chr14:81646730	C	NA	24	0	24	37.375	4.052	0	0	0	23	0	GTF2A1	intronic	NA
GBM_A_T3--3	chr14:81646730	C	NA	13	0	13	36.769	2.488	0	0	0	13	0	GTF2A1	intronic	NA
GBM_A_T3--4	chr14:81646730	C	NA	33	0	33	37.576	3.000	0	0	0	32	0	GTF2A1	intronic	NA
GBM_A_T3--5	chr14:81646730	C	NA	33	0	33	35.909	7.580	0	0	0	30	0	GTF2A1	intronic	NA
GBM_A_T3--6	chr14:81646730	C	NA	42	0	42	38.048	3.131	0	0	0	40	0	GTF2A1	intronic	NA
GBM_A_T3--7	chr14:81646730	C	A	12	0.250	9	37.556	2.242	3	36.667	3.512	9	3	GTF2A1	intronic	NA
GBM_A_T3--GL	chr14:81646730	C	NA	74	0	74	37.757	3.756	0	0	0	72	0	GTF2A1	intronic	NA
GBM_A_T3--1	chr14:92537388	T	C	39	0.256	29	35.483	8.650	10	35.400	2.066	26	10	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr14:92537388	T	NA	16	0	15	36.733	2.658	0	0	0	15	0	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr14:92537388	T	C	15	0.267	11	34.091	5.683	4	34.000	2.000	9	4	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr14:92537388	T	C	27	0.296	18	35.833	3.276	8	34.250	3.536	17	7	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr14:92537388	T	C	30	0.200	24	36.417	3.463	6	33.667	1.633	23	6	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr14:92537388	T	C	24	0.292	16	36.312	2.575	7	35.286	2.138	16	7	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr14:92537388	T	C	19	0.316	13	34.692	6.651	6	35.000	2.191	12	6	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr14:92537388	T	NA	38	0	37	35.486	4.286	0	0	0	36	0	ATXN3	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr15:49088492	C	T	92	0.174	75	37.000	3.308	16	38.312	1.537	72	16	CEP152	intronic	NA
GBM_A_T3--2	chr15:49088492	C	T	72	0.139	62	36.726	3.685	10	36.100	4.095	58	9	CEP152	intronic	NA
GBM_A_T3--3	chr15:49088492	C	T	54	0.278	38	36.526	5.530	15	35.933	8.405	37	14	CEP152	intronic	NA
GBM_A_T3--4	chr15:49088492	C	T	87	0.161	71	36.042	4.062	14	38.214	2.119	65	14	CEP152	intronic	NA
GBM_A_T3--5	chr15:49088492	C	T	51	0.176	41	36.171	4.207	9	36.667	3.041	38	9	CEP152	intronic	NA
GBM_A_T3--6	chr15:49088492	C	T	69	0.116	60	36.950	2.696	8	37.250	2.188	59	8	CEP152	intronic	NA
GBM_A_T3--7	chr15:49088492	C	T	20	0.100	18	37.556	2.175	2	40.000	0.000	18	2	CEP152	intronic	NA
GBM_A_T3--GL	chr15:49088492	C	NA	34	0	33	35.879	4.846	0	0	0	31	0	CEP152	intronic	NA
GBM_A_T3--1	chr15:50902123	C	NA	23	0	23	37.478	3.953	0	0	0	21	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr15:50902123	C	NA	19	0	19	37.947	2.592	0	0	0	19	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr15:50902123	C	A	11	0.273	8	38.000	2.507	3	37.000	0.000	8	3	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr15:50902123	C	NA	26	0	26	37.115	4.311	0	0	0	24	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr15:50902123	C	NA	17	0	17	37.706	2.640	0	0	0	17	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr15:50902123	C	NA	33	0	33	38.182	2.200	0	0	0	33	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr15:50902123	C	A	14	0.071	13	38.308	2.175	1	40.000	0.000	13	1	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr15:50902123	C	NA	40	0	40	37.225	3.445	0	0	0	39	0	TRPM7	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr16:46694828	T	NA	44	0	44	36.955	3.065	0	0	0	43	0	VPS35	intronic	NA
GBM_A_T3--2	chr16:46694828	T	NA	23	0	23	37.391	3.086	0	0	0	22	0	VPS35	intronic	NA
GBM_A_T3--3	chr16:46694828	T	C	32	0.188	26	35.308	7.064	6	37.000	0.000	23	6	VPS35	intronic	NA
GBM_A_T3--4	chr16:46694828	T	NA	45	0	45	37.333	2.992	0	0	0	44	0	VPS35	intronic	NA
GBM_A_T3--5	chr16:46694828	T	C	33	0.030	32	35.875	4.904	1	37.000	0.000	29	1	VPS35	intronic	NA
GBM_A_T3--6	chr16:46694828	T	C	33	0.061	31	36.742	3.162	2	29.500	10.607	30	1	VPS35	intronic	NA
GBM_A_T3--7	chr16:46694828	T	C	40	0.075	37	37.351	2.771	3	37.000	0.000	36	3	VPS35	intronic	NA
GBM_A_T3--GL	chr16:46694828	T	NA	47	0	47	36.468	5.721	0	0	0	44	0	VPS35	intronic	NA
GBM_A_T3--1	chr16:46694829	G	NA	43	0	43	36.698	3.808	0	0	0	41	0	VPS35	intronic	NA
GBM_A_T3--2	chr16:46694829	G	NA	23	0	23	37.435	2.889	0	0	0	22	0	VPS35	intronic	NA
GBM_A_T3--3	chr16:46694829	G	A	32	0.188	26	35.500	7.458	6	37.000	0.000	23	6	VPS35	intronic	NA
GBM_A_T3--4	chr16:46694829	G	NA	44	0	44	37.500	2.977	0	0	0	43	0	VPS35	intronic	NA
GBM_A_T3--5	chr16:46694829	G	A	33	0.030	32	35.750	4.704	1	37.000	0.000	28	1	VPS35	intronic	NA
GBM_A_T3--6	chr16:46694829	G	A	34	0.059	32	36.500	4.621	2	37.000	0.000	31	2	VPS35	intronic	NA
GBM_A_T3--7	chr16:46694829	G	A	40	0.075	37	36.351	3.615	3	35.667	2.309	34	3	VPS35	intronic	NA
GBM_A_T3--GL	chr16:46694829	G	NA	47	0	47	37.553	3.393	0	0	0	46	0	VPS35	intronic	NA
GBM_A_T3--1	chr16:4835793	A	G	42	0.262	31	32.871	5.903	11	28.727	11.942	28	7	SEPT12	intronic	NA
GBM_A_T3--2	chr16:4835793	A	NA	38	0	35	33.514	6.432	0	0	0	28	0	SEPT12	intronic	NA
GBM_A_T3--3	chr16:4835793	A	G	52	0.058	48	33.062	4.733	3	25.667	6.351	38	1	SEPT12	intronic	NA
GBM_A_T3--4	chr16:4835793	A	G	34	0.059	32	32.312	4.028	2	24.000	12.728	24	1	SEPT12	intronic	NA
GBM_A_T3--5	chr16:4835793	A	NA	33	0	32	32.438	5.267	0	0	0	24	0	SEPT12	intronic	NA
GBM_A_T3--6	chr16:4835793	A	NA	40	0	38	33.289	5.177	0	0	0	33	0	SEPT12	intronic	NA
GBM_A_T3--7	chr16:4835793	A	NA	36	0	36	32.472	7.625	0	0	0	29	0	SEPT12	intronic	NA
GBM_A_T3--GL	chr16:4835793	A	NA	55	0	53	33.151	6.209	0	0	0	46	0	SEPT12	intronic	NA
GBM_A_T3--1	chr16:77228768	G	NA	58	0	58	36.552	3.885	0	0	0	55	0	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr16:77228768	G	NA	34	0	34	35.882	3.574	0	0	0	33	0	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr16:77228768	G	T	73	0.055	69	34.797	4.966	4	26.750	14.614	61	2	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr16:77228768	G	NA	51	0	51	36.392	3.341	0	0	0	48	0	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr16:77228768	G	NA	53	0	53	35.528	5.703	0	0	0	47	0	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr16:77228768	G	T	77	0.091	70	34.771	6.910	7	33.857	5.490	61	5	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr16:77228768	G	T	82	0.159	69	36.159	4.711	13	33.462	8.442	63	11	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr16:77228768	G	NA	44	0	44	33.909	6.812	0	0	0	38	0	MON1B	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr16:84488676	A	NA	38	0	38	24.026	10.941	0	0	0	14	0	ATP2C2	intronic	NA
GBM_A_T3--2	chr16:84488676	A	NA	26	0	26	27.654	10.016	0	0	0	14	0	ATP2C2	intronic	NA
GBM_A_T3--3	chr16:84488676	A	NA	32	0	32	26.875	9.520	0	0	0	13	0	ATP2C2	intronic	NA
GBM_A_T3--4	chr16:84488676	A	G	62	0.242	47	28.319	8.194	15	35.000	2.928	26	14	ATP2C2	intronic	NA
GBM_A_T3--5	chr16:84488676	A	NA	31	0	29	26.448	10.193	0	0	0	15	0	ATP2C2	intronic	NA
GBM_A_T3--6	chr16:84488676	A	NA	32	0	30	26.800	10.260	0	0	0	14	0	ATP2C2	intronic	NA
GBM_A_T3--7	chr16:84488676	A	NA	50	0	49	27.265	10.041	0	0	0	26	0	ATP2C2	intronic	NA
GBM_A_T3--GL	chr16:84488676	A	NA	38	0	38	25.368	10.312	0	0	0	17	0	ATP2C2	intronic	NA
GBM_A_T3--1	chr17:11550419	C	A	52	0.135	45	36.000	5.649	7	35.143	2.854	41	7	DNAH9	exonic	stopgain_SNV
GBM_A_T3--2	chr17:11550419	C	A	23	0.087	21	36.143	4.498	2	26.000	15.556	18	1	DNAH9	exonic	stopgain_SNV
GBM_A_T3--3	chr17:11550419	C	A	22	0.364	14	34.929	5.298	8	35.125	4.016	12	7	DNAH9	exonic	stopgain_SNV
GBM_A_T3--4	chr17:11550419	C	A	31	0.387	19	35.632	4.597	12	36.500	2.393	18	12	DNAH9	exonic	stopgain_SNV
GBM_A_T3--5	chr17:11550419	C	A	40	0.225	31	36.645	2.497	9	35.000	3.464	31	8	DNAH9	exonic	stopgain_SNV
GBM_A_T3--6	chr17:11550419	C	A	49	0.327	33	35.667	4.233	16	34.250	6.298	31	14	DNAH9	exonic	stopgain_SNV
GBM_A_T3--7	chr17:11550419	C	A	30	0.667	10	34.300	7.088	20	34.800	5.709	9	18	DNAH9	exonic	stopgain_SNV
GBM_A_T3--GL	chr17:11550419	C	NA	48	0	48	36.500	3.115	0	0	0	46	0	DNAH9	exonic	stopgain_SNV
GBM_A_T3--1	chr17:16725441	G	A	222	0.180	182	36.412	3.986	40	36.650	5.596	172	38	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--2	chr17:16725441	G	A	163	0.135	141	36.929	3.683	22	36.273	4.495	138	20	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--3	chr17:16725441	G	A	283	0.269	207	36.174	4.579	76	35.816	4.615	192	69	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--4	chr17:16725441	G	A	217	0.221	169	36.237	4.448	48	36.167	4.991	158	46	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--5	chr17:16725441	G	A	147	0.184	120	35.842	5.013	27	36.111	3.166	110	26	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--6	chr17:16725441	G	A	191	0.162	160	36.875	3.485	31	35.452	5.359	155	27	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--7	chr17:16725441	G	A	283	0.318	193	36.155	4.681	90	35.722	5.300	178	84	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--GL	chr17:16725441	G	NA	122	0	122	36.975	3.468	0	0	0	120	0	USP32P1(dist=17622),KRT16P2(dist=8356)	intergenic	NA
GBM_A_T3--1	chr17:47688885	C	NA	49	0	48	35.833	6.755	0	0	0	45	0	SPOP	intronic	NA
GBM_A_T3--2	chr17:47688885	C	NA	30	0	29	37.448	3.135	0	0	0	28	0	SPOP	intronic	NA
GBM_A_T3--3	chr17:47688885	C	NA	24	0	24	36.667	3.060	0	0	0	23	0	SPOP	intronic	NA
GBM_A_T3--4	chr17:47688885	C	NA	48	0	48	36.646	2.740	0	0	0	47	0	SPOP	intronic	NA
GBM_A_T3--5	chr17:47688885	C	NA	28	0	28	37.464	2.531	0	0	0	28	0	SPOP	intronic	NA
GBM_A_T3--6	chr17:47688885	C	G	41	0.195	32	37.906	2.977	8	33.000	0.000	31	8	SPOP	intronic	NA
GBM_A_T3--7	chr17:47688885	C	NA	32	0	32	37.719	2.303	0	0	0	32	0	SPOP	intronic	NA
GBM_A_T3--GL	chr17:47688885	C	NA	54	0	54	36.278	4.200	0	0	0	50	0	SPOP	intronic	NA
GBM_A_T3--1	chr1:76384771	C	G	81	0.123	71	36.676	4.825	10	39.400	1.265	68	10	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr1:76384771	C	G	31	0.161	26	37.192	3.020	5	36.200	5.357	25	4	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr1:76384771	C	G	37	0.270	27	36.481	6.154	10	37.800	2.251	24	10	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr1:76384771	C	G	86	0.326	58	37.690	2.356	28	36.786	6.356	58	27	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr1:76384771	C	G	55	0.109	49	37.224	4.497	6	37.833	2.787	45	6	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr1:76384771	C	G	100	0.260	74	35.730	6.240	26	36.115	4.502	68	24	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr1:76384771	C	G	33	0.182	27	37.370	2.529	6	33.667	6.314	27	5	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr1:76384771	C	NA	127	0	127	37.772	3.559	0	0	0	122	0	ASB17	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr17:74288421	A	NA	279	0	146	35.336	5.575	0	0	0	136	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr17:74288421	A	G	238	0.315	149	35.235	5.139	75	35.173	6.697	136	67	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr17:74288421	A	NA	479	0	269	34.911	5.135	0	0	0	237	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr17:74288421	A	NA	265	0	162	35.407	5.051	0	0	0	148	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr17:74288421	A	NA	219	0	114	34.518	5.866	0	0	0	98	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr17:74288421	A	NA	221	0	124	35.452	4.158	0	0	0	116	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr17:74288421	A	NA	514	0	303	35.165	5.145	0	0	0	271	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr17:74288421	A	NA	68	0	41	36.171	3.308	0	0	0	39	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr17:74288422	T	NA	276	0	144	34.056	5.878	0	0	0	123	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr17:74288422	T	C	237	0.380	147	33.401	6.841	90	34.933	5.508	121	79	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr17:74288422	T	NA	476	0	265	33.309	6.971	0	0	0	220	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr17:74288422	T	NA	265	0	161	34.099	5.761	0	0	0	136	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr17:74288422	T	NA	218	0	112	34.116	4.880	0	0	0	96	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr17:74288422	T	NA	220	0	123	34.016	5.739	0	0	0	106	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr17:74288422	T	NA	512	0	298	33.487	7.224	0	0	0	248	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr17:74288422	T	NA	68	0	41	34.463	3.742	0	0	0	37	0	QRICH2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr18:19148056	C	NA	19	0	19	35.737	2.884	0	0	0	19	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--2	chr18:19148056	C	NA	18	0	18	38.444	2.007	0	0	0	18	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--3	chr18:19148056	C	A	19	0.053	18	37.722	2.244	1	37.000	0.000	18	1	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--4	chr18:19148056	C	NA	27	0	27	35.370	6.698	0	0	0	24	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--5	chr18:19148056	C	NA	25	0	25	37.480	3.002	0	0	0	24	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--6	chr18:19148056	C	NA	33	0	33	37.455	3.103	0	0	0	32	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--7	chr18:19148056	C	A	17	0.235	13	37.846	2.075	4	38.500	1.732	13	4	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--GL	chr18:19148056	C	NA	34	0	34	36.706	4.616	0	0	0	32	0	ESCO1(NM_052911:exon6:c.1531-1G>T)	splicing	NA
GBM_A_T3--1	chr18:9887429	C	T	158	0.019	107	35.570	5.735	3	23.333	15.822	95	1	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr18:9887429	C	T	111	0.261	82	35.500	5.401	29	31.379	8.542	74	21	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr18:9887429	C	T	187	0.027	125	35.536	5.906	5	33.200	15.205	110	4	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr18:9887429	C	T	163	0.018	111	35.505	6.337	3	33.000	0.000	101	3	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr18:9887429	C	NA	141	0	105	34.781	7.918	0	0	0	89	0	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr18:9887429	C	NA	184	0	110	34.845	6.769	0	0	0	96	0	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr18:9887429	C	T	223	0.004	154	36.006	5.852	1	33.000	0.000	137	1	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr18:9887429	C	NA	92	0	67	35.119	6.561	0	0	0	57	0	TXNDC2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr18:9887433	A	G	155	0.019	104	36.183	4.114	3	23.333	15.822	98	1	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--2	chr18:9887433	A	G	113	0.257	84	35.536	5.900	29	30.966	9.522	75	21	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--3	chr18:9887433	A	G	190	0.011	131	35.435	5.795	2	40.000	0.000	118	2	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--4	chr18:9887433	A	G	164	0.018	112	35.420	5.109	3	27.000	10.392	102	2	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--5	chr18:9887433	A	NA	142	0	106	35.585	5.675	0	0	0	96	0	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--6	chr18:9887433	A	NA	183	0	109	34.394	7.075	0	0	0	92	0	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--7	chr18:9887433	A	G	231	0.004	162	36.278	5.054	1	33.000	0.000	152	1	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--GL	chr18:9887433	A	NA	93	0	68	36.044	4.912	0	0	0	65	0	TXNDC2	exonic	synonymous_SNV
GBM_A_T3--1	chr20:62839589	G	A	88	0.250	66	36.045	5.581	22	35.455	5.974	61	20	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr20:62839589	G	A	77	0.260	57	34.877	6.083	20	35.200	3.088	49	19	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr20:62839589	G	A	127	0.386	78	34.756	4.960	49	36.082	4.252	68	47	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr20:62839589	G	A	85	0.400	51	35.314	6.754	34	35.971	6.464	45	32	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr20:62839589	G	A	73	0.247	55	35.691	4.891	18	35.500	5.783	50	17	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr20:62839589	G	A	101	0.277	73	35.479	4.842	28	34.286	3.343	68	26	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr20:62839589	G	A	118	0.373	74	36.689	3.958	44	37.159	3.457	70	43	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr20:62839589	G	NA	60	0	59	37.169	3.001	0	0	0	58	0	MYT1	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr2:109104431	C	T	49	0.041	47	35.340	4.783	2	37.000	0.000	43	2	GCC2	intronic	NA
GBM_A_T3--2	chr2:109104431	C	NA	20	0	20	33.600	7.619	0	0	0	17	0	GCC2	intronic	NA
GBM_A_T3--3	chr2:109104431	C	T	20	0.300	14	34.571	5.880	6	37.000	0.000	13	6	GCC2	intronic	NA
GBM_A_T3--4	chr2:109104431	C	T	29	0.103	26	35.385	5.536	3	37.000	0.000	24	3	GCC2	intronic	NA
GBM_A_T3--5	chr2:109104431	C	NA	30	0	30	36.367	2.697	0	0	0	30	0	GCC2	intronic	NA
GBM_A_T3--6	chr2:109104431	C	NA	38	0	38	35.316	5.955	0	0	0	34	0	GCC2	intronic	NA
GBM_A_T3--7	chr2:109104431	C	T	21	0.095	19	36.158	2.911	2	37.000	0.000	18	2	GCC2	intronic	NA
GBM_A_T3--GL	chr2:109104431	C	NA	37	0	37	36.432	5.824	0	0	0	35	0	GCC2	intronic	NA
GBM_A_T3--1	chr2:109104432	A	G	49	0.041	47	34.915	4.685	2	37.000	0.000	41	2	GCC2	intronic	NA
GBM_A_T3--2	chr2:109104432	A	NA	20	0	20	35.700	3.496	0	0	0	18	0	GCC2	intronic	NA
GBM_A_T3--3	chr2:109104432	A	G	20	0.300	14	34.714	3.667	6	36.333	1.633	12	6	GCC2	intronic	NA
GBM_A_T3--4	chr2:109104432	A	G	29	0.103	26	35.154	5.073	3	33.667	5.774	24	2	GCC2	intronic	NA
GBM_A_T3--5	chr2:109104432	A	NA	30	0	30	35.667	3.772	0	0	0	27	0	GCC2	intronic	NA
GBM_A_T3--6	chr2:109104432	A	NA	38	0	38	35.921	3.475	0	0	0	35	0	GCC2	intronic	NA
GBM_A_T3--7	chr2:109104432	A	G	21	0.095	19	35.263	3.314	2	35.000	2.828	18	2	GCC2	intronic	NA
GBM_A_T3--GL	chr2:109104432	A	NA	38	0	38	36.395	3.789	0	0	0	35	0	GCC2	intronic	NA
GBM_A_T3--1	chr21:44488755	G	NA	54	0	53	29.849	7.217	0	0	0	31	0	CBS	intronic	NA
GBM_A_T3--2	chr21:44488755	G	NA	48	0	45	31.311	6.277	0	0	0	32	0	CBS	intronic	NA
GBM_A_T3--3	chr21:44488755	G	NA	80	0	79	29.367	8.336	0	0	0	47	0	CBS	intronic	NA
GBM_A_T3--4	chr21:44488755	G	NA	65	0	65	29.400	8.202	0	0	0	42	0	CBS	intronic	NA
GBM_A_T3--5	chr21:44488755	G	NA	42	0	42	30.071	7.333	0	0	0	25	0	CBS	intronic	NA
GBM_A_T3--6	chr21:44488755	G	NA	65	0	61	29.492	8.656	0	0	0	37	0	CBS	intronic	NA
GBM_A_T3--7	chr21:44488755	G	A	73	0.219	57	31.053	6.704	16	36.250	1.612	38	16	CBS	intronic	NA
GBM_A_T3--GL	chr21:44488755	G	NA	74	0	69	29.986	6.466	0	0	0	40	0	CBS	intronic	NA
GBM_A_T3--1	chr21:47860641	G	C	56	0.214	43	35.930	5.994	12	33.000	0.000	39	12	PCNT	intronic	NA
GBM_A_T3--2	chr21:47860641	G	NA	32	0	32	35.875	5.173	0	0	0	29	0	PCNT	intronic	NA
GBM_A_T3--3	chr21:47860641	G	NA	60	0	60	37.417	3.552	0	0	0	58	0	PCNT	intronic	NA
GBM_A_T3--4	chr21:47860641	G	NA	70	0	70	36.671	4.815	0	0	0	64	0	PCNT	intronic	NA
GBM_A_T3--5	chr21:47860641	G	NA	39	0	39	35.333	8.102	0	0	0	36	0	PCNT	intronic	NA
GBM_A_T3--6	chr21:47860641	G	NA	61	0	61	36.902	3.859	0	0	0	57	0	PCNT	intronic	NA
GBM_A_T3--7	chr21:47860641	G	NA	59	0	59	36.068	6.258	0	0	0	53	0	PCNT	intronic	NA
GBM_A_T3--GL	chr21:47860641	G	NA	56	0	56	36.196	5.217	0	0	0	52	0	PCNT	intronic	NA
GBM_A_T3--1	chr2:179470222	C	T	39	0.231	30	36.933	3.814	9	38.222	2.438	28	9	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr2:179470222	C	T	18	0.500	9	38.667	1.581	9	34.556	4.953	9	7	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr2:179470222	C	NA	10	0	10	36.800	2.348	0	0	0	10	0	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr2:179470222	C	T	30	0.300	21	37.095	3.315	9	35.222	5.263	20	8	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr2:179470222	C	T	28	0.214	22	35.545	7.321	6	37.333	2.582	20	6	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr2:179470222	C	T	37	0.297	26	35.962	4.238	11	34.727	9.603	23	10	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr2:179470222	C	NA	11	0	10	37.500	2.121	0	0	0	10	0	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr2:179470222	C	NA	41	0	41	37.244	2.973	0	0	0	40	0	TTN	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr2:179547860	A	NA	41	0	41	38.073	2.317	0	0	0	40	0	TTN	intronic	NA
GBM_A_T3--2	chr2:179547860	A	NA	29	0	29	37.552	3.611	0	0	0	28	0	TTN	intronic	NA
GBM_A_T3--3	chr2:179547860	A	G	24	0.167	20	37.650	3.150	4	37.500	3.317	19	4	TTN	intronic	NA
GBM_A_T3--4	chr2:179547860	A	NA	58	0	58	37.707	2.256	0	0	0	58	0	TTN	intronic	NA
GBM_A_T3--5	chr2:179547860	A	NA	37	0	37	37.162	5.800	0	0	0	36	0	TTN	intronic	NA
GBM_A_T3--6	chr2:179547860	A	NA	49	0	49	36.939	3.381	0	0	0	46	0	TTN	intronic	NA
GBM_A_T3--7	chr2:179547860	A	NA	10	0	10	38.200	1.549	0	0	0	10	0	TTN	intronic	NA
GBM_A_T3--GL	chr2:179547860	A	NA	52	0	52	37.423	2.803	0	0	0	50	0	TTN	intronic	NA
GBM_A_T3--1	chr2:179632931	G	T	186	0.296	131	38.252	3.254	55	37.709	2.923	128	53	TTN	intronic	NA
GBM_A_T3--2	chr2:179632931	G	T	110	0.382	68	38.382	3.698	42	38.643	2.612	66	41	TTN	intronic	NA
GBM_A_T3--3	chr2:179632931	G	T	106	0.453	58	37.845	3.865	48	37.646	5.341	57	46	TTN	intronic	NA
GBM_A_T3--4	chr2:179632931	G	T	148	0.338	98	37.643	3.883	50	37.960	2.740	95	49	TTN	intronic	NA
GBM_A_T3--5	chr2:179632931	G	T	135	0.244	102	38.461	2.496	33	38.030	1.960	100	33	TTN	intronic	NA
GBM_A_T3--6	chr2:179632931	G	T	176	0.318	120	37.275	4.863	56	37.982	4.818	118	55	TTN	intronic	NA
GBM_A_T3--7	chr2:179632931	G	T	133	0.218	104	38.010	4.073	29	37.828	2.804	100	29	TTN	intronic	NA
GBM_A_T3--GL	chr2:179632931	G	NA	114	0	113	38.018	3.698	0	0	0	109	0	TTN	intronic	NA
GBM_A_T3--1	chr21:9826228	G	NA	42	0	42	32.357	7.493	0	0	0	32	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--2	chr21:9826228	G	A	20	0.200	15	33.133	5.718	4	30.000	3.464	11	2	MIR3687	ncRNA_exonic	NA
GBM_A_T3--3	chr21:9826228	G	NA	55	0	55	34.455	4.446	0	0	0	49	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--4	chr21:9826228	G	NA	47	0	47	34.319	5.013	0	0	0	41	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--5	chr21:9826228	G	NA	40	0	40	34.800	4.810	0	0	0	36	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--6	chr21:9826228	G	NA	43	0	43	34.977	2.907	0	0	0	41	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--7	chr21:9826228	G	NA	53	0	53	35.019	4.144	0	0	0	49	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--GL	chr21:9826228	G	NA	64	0	64	32.625	6.980	0	0	0	51	0	MIR3687	ncRNA_exonic	NA
GBM_A_T3--1	chr2:198353763	C	T	135	0.304	94	37.638	2.635	41	37.220	3.468	94	39	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr2:198353763	C	T	68	0.235	52	37.596	3.626	16	38.188	2.455	50	16	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr2:198353763	C	T	79	0.430	44	38.864	1.863	34	35.824	6.379	44	31	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr2:198353763	C	T	102	0.255	76	36.829	6.323	26	38.308	3.461	72	25	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr2:198353763	C	T	105	0.229	80	36.550	5.630	24	37.333	4.188	74	23	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr2:198353763	C	T	104	0.337	68	37.015	5.573	35	37.657	2.807	63	34	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr2:198353763	C	T	83	0.265	61	37.918	2.629	22	37.455	2.807	60	22	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr2:198353763	C	NA	125	0	125	37.344	3.974	0	0	0	119	0	HSPD1	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr22:30223626	C	NA	25	0	25	36.760	5.356	0	0	0	23	0	ASCC2	intronic	NA
GBM_A_T3--2	chr22:30223626	C	NA	15	0	15	36.533	3.681	0	0	0	14	0	ASCC2	intronic	NA
GBM_A_T3--3	chr22:30223626	C	NA	24	0	24	36.833	2.959	0	0	0	23	0	ASCC2	intronic	NA
GBM_A_T3--4	chr22:30223626	C	NA	28	0	28	36.286	3.710	0	0	0	25	0	ASCC2	intronic	NA
GBM_A_T3--5	chr22:30223626	C	A	26	0.154	22	35.773	3.504	4	36.750	2.872	20	4	ASCC2	intronic	NA
GBM_A_T3--6	chr22:30223626	C	NA	28	0	28	36.964	2.009	0	0	0	28	0	ASCC2	intronic	NA
GBM_A_T3--7	chr22:30223626	C	NA	28	0	28	36.607	2.753	0	0	0	27	0	ASCC2	intronic	NA
GBM_A_T3--GL	chr22:30223626	C	NA	33	0	33	36.545	3.073	0	0	0	32	0	ASCC2	intronic	NA
GBM_A_T3--1	chr2:26694031	C	G	86	0.326	58	37.241	3.729	28	37.321	3.400	55	26	OTOF	intronic	NA
GBM_A_T3--2	chr2:26694031	C	G	58	0.259	43	35.884	4.124	15	37.133	3.114	39	14	OTOF	intronic	NA
GBM_A_T3--3	chr2:26694031	C	G	98	0.449	54	36.481	5.801	44	36.545	4.123	49	40	OTOF	intronic	NA
GBM_A_T3--4	chr2:26694031	C	G	91	0.297	64	35.969	4.915	27	37.407	4.060	58	25	OTOF	intronic	NA
GBM_A_T3--5	chr2:26694031	C	G	63	0.254	46	36.543	4.319	16	37.562	2.658	42	16	OTOF	intronic	NA
GBM_A_T3--6	chr2:26694031	C	G	82	0.439	46	36.739	4.809	36	36.194	5.187	42	32	OTOF	intronic	NA
GBM_A_T3--7	chr2:26694031	C	G	81	0.321	54	36.407	3.854	26	36.346	2.545	49	26	OTOF	intronic	NA
GBM_A_T3--GL	chr2:26694031	C	NA	46	0	46	36.457	5.315	0	0	0	42	0	OTOF	intronic	NA
GBM_A_T3--1	chr3:1369255	G	NA	58	0	58	36.914	3.368	0	0	0	57	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr3:1369255	G	NA	34	0	34	37.176	2.949	0	0	0	33	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr3:1369255	G	C	18	0.222	14	35.571	3.435	4	35.250	5.679	13	3	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr3:1369255	G	NA	56	0	55	36.182	3.438	0	0	0	52	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr3:1369255	G	NA	43	0	43	36.302	4.318	0	0	0	40	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr3:1369255	G	NA	71	0	71	37.183	4.287	0	0	0	70	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr3:1369255	G	NA	21	0	21	35.571	5.819	0	0	0	18	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr3:1369255	G	NA	54	0	54	37.389	2.406	0	0	0	54	0	CNTN6	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr3:164760856	G	A	118	0.186	96	36.312	3.052	22	37.818	2.423	94	22	SI	exonic	synonymous_SNV
GBM_A_T3--2	chr3:164760856	G	NA	51	0	51	36.745	3.440	0	0	0	50	0	SI	exonic	synonymous_SNV
GBM_A_T3--3	chr3:164760856	G	A	31	0.226	24	35.667	3.931	7	34.143	8.764	23	6	SI	exonic	synonymous_SNV
GBM_A_T3--4	chr3:164760856	G	A	91	0.154	77	35.844	4.221	14	37.500	2.378	73	14	SI	exonic	synonymous_SNV
GBM_A_T3--5	chr3:164760856	G	A	75	0.067	70	36.500	4.471	5	38.800	1.643	69	5	SI	exonic	synonymous_SNV
GBM_A_T3--6	chr3:164760856	G	A	118	0.263	87	36.414	3.887	31	37.000	4.494	84	30	SI	exonic	synonymous_SNV
GBM_A_T3--7	chr3:164760856	G	A	31	0.387	19	35.158	4.868	12	36.333	4.579	17	10	SI	exonic	synonymous_SNV
GBM_A_T3--GL	chr3:164760856	G	NA	147	0	147	36.571	3.154	0	0	0	143	0	SI	exonic	synonymous_SNV
GBM_A_T3--1	chr4:114135113	T	A	43	0.256	32	36.906	2.388	11	34.273	3.133	31	10	ANK2	intronic	NA
GBM_A_T3--2	chr4:114135113	T	NA	28	0	28	36.679	3.465	0	0	0	27	0	ANK2	intronic	NA
GBM_A_T3--3	chr4:114135113	T	A	32	0.281	23	36.565	2.858	9	36.111	1.764	22	9	ANK2	intronic	NA
GBM_A_T3--4	chr4:114135113	T	NA	41	0	41	35.829	3.626	0	0	0	38	0	ANK2	intronic	NA
GBM_A_T3--5	chr4:114135113	T	NA	37	0	37	35.811	3.455	0	0	0	34	0	ANK2	intronic	NA
GBM_A_T3--6	chr4:114135113	T	A	37	0.162	31	36.871	2.473	6	35.667	2.066	31	6	ANK2	intronic	NA
GBM_A_T3--7	chr4:114135113	T	NA	43	0	43	36.512	3.334	0	0	0	41	0	ANK2	intronic	NA
GBM_A_T3--GL	chr4:114135113	T	NA	40	0	39	36.615	3.944	0	0	0	36	0	ANK2	intronic	NA
GBM_A_T3--1	chr4:88536899	A	G	165	0.691	51	31.745	8.966	114	36.026	5.077	33	105	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr4:88536899	A	G	111	0.622	42	35.000	6.481	69	35.710	5.539	35	61	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr4:88536899	A	NA	184	0	183	34.989	6.499	0	0	0	156	0	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr4:88536899	A	G	139	0.683	44	32.909	8.810	95	35.989	6.078	35	86	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr4:88536899	A	G	177	0.028	172	34.349	7.808	5	23.000	12.981	145	1	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr4:88536899	A	G	159	0.654	54	34.556	6.914	104	36.894	4.308	46	97	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr4:88536899	A	G	154	0.688	48	33.792	7.360	106	35.613	5.563	37	95	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr4:88536899	A	NA	116	0	116	35.457	6.419	0	0	0	100	0	DSPP	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr5:16762252	A	NA	20	0	20	36.900	3.523	0	0	0	19	0	MYO10	intronic	NA
GBM_A_T3--2	chr5:16762252	A	NA	21	0	21	36.714	2.723	0	0	0	21	0	MYO10	intronic	NA
GBM_A_T3--3	chr5:16762252	A	T	13	0.308	9	37.111	2.713	4	33.000	12.083	9	3	MYO10	intronic	NA
GBM_A_T3--4	chr5:16762252	A	T	15	0.133	13	37.538	2.470	2	38.500	2.121	13	2	MYO10	intronic	NA
GBM_A_T3--5	chr5:16762252	A	NA	12	0	12	36.000	5.274	0	0	0	11	0	MYO10	intronic	NA
GBM_A_T3--6	chr5:16762252	A	T	25	0.200	20	36.750	3.447	5	30.000	11.158	19	3	MYO10	intronic	NA
GBM_A_T3--7	chr5:16762252	A	T	15	0.133	13	34.231	5.262	2	33.500	9.192	11	1	MYO10	intronic	NA
GBM_A_T3--GL	chr5:16762252	A	NA	36	0	36	37.028	6.026	0	0	0	34	0	MYO10	intronic	NA
GBM_A_T3--1	chr5:180473072	C	NA	38	0	38	28.474	8.965	0	0	0	20	0	BTNL9	intronic	NA
GBM_A_T3--2	chr5:180473072	C	T	36	0.222	28	30.000	7.916	8	33.875	5.718	18	7	BTNL9	intronic	NA
GBM_A_T3--3	chr5:180473072	C	T	68	0.059	64	30.250	8.246	4	25.750	13.793	40	2	BTNL9	intronic	NA
GBM_A_T3--4	chr5:180473072	C	NA	58	0	54	29.907	8.625	0	0	0	34	0	BTNL9	intronic	NA
GBM_A_T3--5	chr5:180473072	C	T	50	0.060	47	32.404	6.516	3	24.667	11.240	34	1	BTNL9	intronic	NA
GBM_A_T3--6	chr5:180473072	C	T	54	0.019	53	27.509	9.154	1	37.000	0.000	25	1	BTNL9	intronic	NA
GBM_A_T3--7	chr5:180473072	C	T	116	0.095	105	29.114	9.361	11	29.273	10.669	64	6	BTNL9	intronic	NA
GBM_A_T3--GL	chr5:180473072	C	NA	34	0	34	29.088	6.757	0	0	0	19	0	BTNL9	intronic	NA
GBM_A_T3--1	chr5:49405744	A	T	19	0.105	16	36.750	2.569	2	38.500	2.121	16	2	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--2	chr5:49405744	A	T	21	0.095	19	36.737	4.782	2	38.500	2.121	17	2	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--3	chr5:49405744	A	T	19	0.053	16	36.125	2.391	1	40.000	0.000	16	1	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--4	chr5:49405744	A	T	41	0.098	37	36.730	3.115	4	37.750	1.500	36	4	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--5	chr5:49405744	A	T	18	0.056	17	36.471	3.105	1	37.000	0.000	16	1	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--6	chr5:49405744	A	T	25	0.280	18	36.611	3.346	7	34.143	8.764	17	6	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--7	chr5:49405744	A	T	26	0.192	21	35.619	5.643	5	38.800	1.643	19	5	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--GL	chr5:49405744	A	NA	34	0	34	35.706	4.239	0	0	0	31	0	NONE(dist=NONE),EMB(dist=286287)	intergenic	NA
GBM_A_T3--1	chr6:170627650	C	T	162	0.185	130	34.185	6.553	30	34.400	7.266	110	28	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr6:170627650	C	T	113	0.177	93	35.140	4.907	20	35.750	5.674	85	19	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr6:170627650	C	T	123	0.008	122	33.951	6.924	1	40.000	0.000	104	1	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr6:170627650	C	NA	137	0	136	34.360	5.758	0	0	0	114	0	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr6:170627650	C	T	106	0.245	79	34.228	5.879	26	36.769	3.050	69	26	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr6:170627650	C	NA	120	0	117	33.615	7.151	0	0	0	95	0	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr6:170627650	C	NA	130	0	130	34.231	6.309	0	0	0	112	0	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr6:170627650	C	NA	58	0	58	33.638	6.823	0	0	0	47	0	FAM120B	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr6:54805192	C	NA	73	0	73	37.123	3.046	0	0	0	70	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr6:54805192	C	NA	46	0	46	36.130	5.252	0	0	0	40	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr6:54805192	C	A	18	0.167	15	35.867	4.422	3	38.000	1.732	13	3	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr6:54805192	C	NA	61	0	61	37.426	2.980	0	0	0	60	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr6:54805192	C	NA	51	0	51	36.902	4.239	0	0	0	50	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr6:54805192	C	NA	62	0	61	36.836	4.933	0	0	0	59	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr6:54805192	C	NA	33	0	33	36.818	2.698	0	0	0	33	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr6:54805192	C	NA	51	0	51	36.824	4.938	0	0	0	47	0	FAM83B	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr7:38301835	C	NA	32	0	32	36.219	5.166	0	0	0	29	0	TARP	intronic	NA
GBM_A_T3--2	chr7:38301835	C	NA	22	0	22	36.682	5.393	0	0	0	21	0	TARP	intronic	NA
GBM_A_T3--3	chr7:38301835	C	A	16	0.188	13	36.231	3.833	3	36.667	3.512	12	3	TARP	intronic	NA
GBM_A_T3--4	chr7:38301835	C	NA	28	0	28	37.643	3.498	0	0	0	26	0	TARP	intronic	NA
GBM_A_T3--5	chr7:38301835	C	NA	10	0	10	35.400	3.950	0	0	0	9	0	TARP	intronic	NA
GBM_A_T3--6	chr7:38301835	C	NA	33	0	33	35.970	6.302	0	0	0	31	0	TARP	intronic	NA
GBM_A_T3--7	chr7:38301835	C	NA	13	0	13	39.538	1.127	0	0	0	13	0	TARP	intronic	NA
GBM_A_T3--GL	chr7:38301835	C	NA	39	0	39	37.051	5.956	0	0	0	36	0	TARP	intronic	NA
GBM_A_T3--1	chr7:50663280	T	NA	114	0	56	34.464	7.019	0	0	0	50	0	GRB10	intronic	NA
GBM_A_T3--2	chr7:50663280	T	NA	93	0	55	34.073	7.589	0	0	0	47	0	GRB10	intronic	NA
GBM_A_T3--3	chr7:50663280	T	A	100	0.150	38	33.342	8.118	15	35.333	3.773	30	13	GRB10	intronic	NA
GBM_A_T3--4	chr7:50663280	T	A	85	0.024	33	31.667	9.040	2	35.000	2.828	24	2	GRB10	intronic	NA
GBM_A_T3--5	chr7:50663280	T	A	101	0.010	38	33.263	7.012	1	33.000	0.000	30	1	GRB10	intronic	NA
GBM_A_T3--6	chr7:50663280	T	NA	125	0	55	31.764	9.830	0	0	0	44	0	GRB10	intronic	NA
GBM_A_T3--7	chr7:50663280	T	A	89	0.011	41	34.976	5.017	1	37.000	0.000	35	1	GRB10	intronic	NA
GBM_A_T3--GL	chr7:50663280	T	NA	89	0	51	35.137	6.381	0	0	0	46	0	GRB10	intronic	NA
GBM_A_T3--1	chr7:55268958	C	G	1072	0.021	1049	36.213	4.626	23	32.391	4.530	975	20	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr7:55268958	C	G	150	0.220	116	36.293	5.158	33	33.606	1.456	108	33	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr7:55268958	C	NA	2387	0	2383	36.248	4.584	0	0	0	2231	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr7:55268958	C	G	964	0.037	925	36.215	4.903	36	32.667	3.869	859	32	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr7:55268958	C	G	527	0.049	501	36.283	4.645	26	34.115	3.154	470	25	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr7:55268958	C	G	1817	0.001	1812	35.949	5.012	1	33.000	0.000	1670	1	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr7:55268958	C	NA	2227	0	2222	36.194	4.504	0	0	0	2062	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr7:55268958	C	NA	77	0	77	37.247	2.880	0	0	0	76	0	EGFR	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr8:75515733	G	A	71	0.099	64	36.234	5.822	7	37.286	4.751	58	6	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--2	chr8:75515733	G	A	49	0.327	33	38.273	3.651	16	38.438	2.065	32	16	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--3	chr8:75515733	G	A	83	0.024	81	37.407	3.817	2	40.000	0.000	77	2	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--4	chr8:75515733	G	A	80	0.138	67	37.761	2.663	11	37.636	4.178	66	10	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--5	chr8:75515733	G	A	61	0.115	53	37.887	4.051	7	34.000	8.944	50	6	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--6	chr8:75515733	G	A	62	0.016	61	36.770	5.393	1	37.000	0.000	58	1	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--7	chr8:75515733	G	A	98	0.010	97	37.763	3.466	1	37.000	0.000	95	1	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--GL	chr8:75515733	G	NA	54	0	54	38.370	2.810	0	0	0	53	0	FLJ39080	ncRNA_intronic	NA
GBM_A_T3--1	chr9:135772999	T	A	30	0.100	27	24.852	11.644	3	33.000	0.000	14	3	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--2	chr9:135772999	T	A	23	0.130	19	24.053	13.394	3	34.333	2.309	9	3	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--3	chr9:135772999	T	A	35	0.057	33	25.576	11.407	2	33.000	0.000	16	2	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--4	chr9:135772999	T	A	35	0.171	29	25.241	9.771	6	36.333	1.633	10	6	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--5	chr9:135772999	T	NA	25	0	25	26.040	11.070	0	0	0	10	0	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--6	chr9:135772999	T	A	54	0.204	42	26.048	10.847	11	35.182	2.089	21	11	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--7	chr9:135772999	T	A	37	0.243	26	29.462	8.505	9	34.333	2.000	13	9	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--GL	chr9:135772999	T	NA	59	0	58	26.293	10.590	0	0	0	28	0	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
GBM_A_T3--1	chr9:2161764	A	G	57	0.158	48	36.292	3.402	9	35.889	2.977	45	9	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr9:2161764	A	G	40	0.225	31	35.387	4.022	9	37.444	2.877	27	9	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr9:2161764	A	G	19	0.263	14	37.786	2.007	5	37.400	2.881	14	5	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr9:2161764	A	G	52	0.327	35	37.143	3.031	17	35.765	3.364	34	16	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr9:2161764	A	G	55	0.273	40	36.725	2.727	15	32.533	11.230	39	12	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr9:2161764	A	G	58	0.207	46	36.174	2.783	12	37.333	2.462	45	12	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr9:2161764	A	G	35	0.171	29	36.379	2.583	6	34.667	4.082	29	5	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr9:2161764	A	NA	83	0	83	36.639	3.875	0	0	0	79	0	SMARCA2	exonic	nonsynonymous_SNV
GBM_A_T3--1	chr9:68357664	A	G	87	0.149	74	36.189	4.813	13	33.385	6.801	70	10	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--2	chr9:68357664	A	G	57	0.333	38	36.947	3.377	19	34.316	3.591	36	18	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--3	chr9:68357664	A	G	58	0.224	45	37.200	2.936	13	35.231	3.320	44	12	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--4	chr9:68357664	A	G	83	0.169	69	36.377	4.091	14	34.857	4.092	64	12	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--5	chr9:68357664	A	G	59	0.186	47	36.915	3.476	11	34.818	4.792	45	10	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--6	chr9:68357664	A	G	88	0.136	76	35.461	5.660	12	36.500	2.393	67	12	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--7	chr9:68357664	A	G	76	0.158	63	36.556	3.212	12	33.750	4.575	61	9	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--GL	chr9:68357664	A	NA	47	0	47	35.830	4.532	0	0	0	44	0	ANKRD20A3(dist=387371),LOC642236(dist=70119)	intergenic	NA
GBM_A_T3--1	chr9:85863303	T	C	156	0.218	122	36.049	4.242	34	33.971	7.485	114	29	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--2	chr9:85863303	T	C	97	0.227	75	35.267	5.166	22	34.864	6.527	68	18	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--3	chr9:85863303	T	C	66	0.439	37	36.486	3.042	29	35.000	6.319	35	27	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--4	chr9:85863303	T	C	136	0.324	92	35.652	4.918	44	35.705	4.078	86	42	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--5	chr9:85863303	T	C	125	0.264	91	36.209	3.920	33	35.697	5.318	83	30	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--6	chr9:85863303	T	C	156	0.276	113	35.646	3.696	43	35.512	5.926	103	40	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--7	chr9:85863303	T	C	69	0.319	47	35.298	4.112	22	35.455	4.068	42	19	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--GL	chr9:85863303	T	NA	105	0	105	36.324	3.488	0	0	0	98	0	FRMD3	exonic	nonsynonymous_SNV
GBM_A_T3--1	chrY:28817910	C	A	50	0.220	36	37.667	2.530	11	38.364	1.567	36	11	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--2	chrY:28817910	C	A	50	0.080	46	37.435	3.229	4	36.500	4.041	43	4	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--3	chrY:28817910	C	A	54	0.074	48	36.708	5.473	4	38.500	1.732	45	4	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--4	chrY:28817910	C	A	65	0.062	55	37.818	2.951	4	35.250	5.679	53	3	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--5	chrY:28817910	C	A	40	0.100	32	37.469	3.152	4	40.000	0.000	31	4	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--6	chrY:28817910	C	A	50	0.160	40	36.650	4.394	8	38.125	1.553	36	8	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--7	chrY:28817910	C	A	68	0.074	61	36.721	4.561	5	36.200	5.357	57	4	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T3--GL	chrY:28817910	C	NA	37	0	37	37.081	4.252	0	0	0	34	0	TTTY3B(dist=938375),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--1	chr11:111741106	A	C	87	0.103	72	30.583	10.302	9	33.444	13.201	51	7	ALG9	intronic	NA
GBM_A_T4--2	chr11:111741106	A	C	101	0.158	78	31.897	8.090	16	30.500	11.094	56	11	ALG9	intronic	NA
GBM_A_T4--3	chr11:111741106	A	C	112	0.134	91	29.330	10.354	15	36.067	8.565	59	14	ALG9	intronic	NA
GBM_A_T4--4	chr11:111741106	A	C	96	0.083	84	32.083	9.557	8	39.250	1.389	63	8	ALG9	intronic	NA
GBM_A_T4--5	chr11:111741106	A	C	80	0.125	65	30.477	10.733	10	29.900	13.237	44	7	ALG9	intronic	NA
GBM_A_T4--6	chr11:111741106	A	C	85	0.129	70	30.143	11.078	11	31.182	11.686	46	8	ALG9	intronic	NA
GBM_A_T4--7	chr11:111741106	A	C	112	0.125	89	31.337	10.485	14	33.714	10.269	65	12	ALG9	intronic	NA
GBM_A_T4--8	chr11:111741106	A	C	86	0.186	65	28.877	11.696	16	32.750	12.168	41	13	ALG9	intronic	NA
GBM_A_T4--GL	chr11:111741106	A	NA	89	0	81	32.222	9.101	0	0	0	59	0	ALG9	intronic	NA
GBM_A_T4--1	chr11:120348148	C	T	44	0.023	42	34.452	6.932	1	33.000	0.000	38	1	ARHGEF12	intronic	NA
GBM_A_T4--2	chr11:120348148	C	T	51	0.118	45	34.111	6.699	6	21.667	14.334	39	3	ARHGEF12	intronic	NA
GBM_A_T4--3	chr11:120348148	C	T	67	0.194	54	33.537	6.971	13	34.692	6.102	46	12	ARHGEF12	intronic	NA
GBM_A_T4--4	chr11:120348148	C	T	35	0.143	30	33.100	8.551	5	36.200	1.789	26	5	ARHGEF12	intronic	NA
GBM_A_T4--5	chr11:120348148	C	T	37	0.081	33	30.788	9.246	3	28.333	11.719	25	2	ARHGEF12	intronic	NA
GBM_A_T4--6	chr11:120348148	C	T	38	0.184	31	33.484	7.979	7	30.857	11.142	27	6	ARHGEF12	intronic	NA
GBM_A_T4--7	chr11:120348148	C	T	46	0.152	39	34.872	3.473	7	36.429	1.512	35	7	ARHGEF12	intronic	NA
GBM_A_T4--8	chr11:120348148	C	T	48	0.188	39	32.872	7.328	9	29.778	11.311	33	7	ARHGEF12	intronic	NA
GBM_A_T4--GL	chr11:120348148	C	NA	40	0	39	34.744	5.656	0	0	0	36	0	ARHGEF12	intronic	NA
GBM_A_T4--1	chr11:1267348	C	NA	27	0	27	34.926	4.875	0	0	0	22	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr11:1267348	C	NA	74	0	74	36.662	2.990	0	0	0	72	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr11:1267348	C	NA	41	0	41	37.146	3.119	0	0	0	39	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr11:1267348	C	NA	27	0	27	36.852	1.955	0	0	0	27	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr11:1267348	C	A	16	0.188	13	37.000	2.646	3	37.000	0.000	13	3	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr11:1267348	C	NA	27	0	27	36.778	4.098	0	0	0	25	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr11:1267348	C	NA	28	0	28	36.179	3.963	0	0	0	26	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr11:1267348	C	NA	59	0	59	35.864	5.211	0	0	0	51	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr11:1267348	C	NA	40	0	40	35.425	4.690	0	0	0	37	0	MUC5B	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr11:46703628	C	NA	24	0	24	33.417	5.800	0	0	0	18	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr11:46703628	C	NA	54	0	54	35.630	3.200	0	0	0	51	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr11:46703628	C	A	54	0.019	53	36.113	3.446	1	33.000	0.000	49	1	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr11:46703628	C	NA	24	0	24	36.875	2.771	0	0	0	23	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr11:46703628	C	NA	17	0	17	34.824	4.275	0	0	0	15	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr11:46703628	C	A	27	0.148	23	35.043	4.364	4	37.750	1.500	20	4	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr11:46703628	C	NA	53	0	53	35.151	4.035	0	0	0	48	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr11:46703628	C	NA	36	0	36	33.861	7.732	0	0	0	29	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr11:46703628	C	NA	40	0	40	35.900	5.073	0	0	0	38	0	ARHGAP1	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr1:152975594	T	A	88	0.614	34	36.471	5.017	54	36.519	4.219	31	51	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr1:152975594	T	A	114	0.675	37	36.054	3.299	77	35.727	5.062	34	70	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr1:152975594	T	A	149	0.530	70	36.486	4.548	79	35.266	5.950	63	70	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr1:152975594	T	A	85	0.659	28	36.786	3.047	56	36.107	4.942	27	53	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr1:152975594	T	A	113	0.575	48	35.854	3.989	65	36.477	2.646	42	63	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr1:152975594	T	A	91	0.626	34	35.441	4.692	57	35.123	5.106	30	48	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr1:152975594	T	A	117	0.547	53	36.245	5.269	64	36.594	3.064	50	62	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr1:152975594	T	A	141	0.617	54	34.519	7.301	87	35.931	4.635	46	80	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr1:152975594	T	NA	104	0	103	36.718	3.321	0	0	0	99	0	SPRR3	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr1:158450438	G	A	35	0.486	18	35.556	4.829	17	37.647	3.121	16	16	OR10R2	exonic	synonymous_SNV
GBM_A_T4--2	chr1:158450438	G	A	66	0.515	32	36.875	3.900	34	36.471	4.187	30	31	OR10R2	exonic	synonymous_SNV
GBM_A_T4--3	chr1:158450438	G	A	97	0.660	33	36.061	5.500	64	35.906	5.264	30	60	OR10R2	exonic	synonymous_SNV
GBM_A_T4--4	chr1:158450438	G	A	36	0.722	10	36.800	4.104	26	37.231	2.847	9	25	OR10R2	exonic	synonymous_SNV
GBM_A_T4--5	chr1:158450438	G	A	24	0.542	11	36.364	2.942	13	35.308	4.820	11	12	OR10R2	exonic	synonymous_SNV
GBM_A_T4--6	chr1:158450438	G	A	44	0.545	20	34.250	9.216	24	38.083	2.796	17	23	OR10R2	exonic	synonymous_SNV
GBM_A_T4--7	chr1:158450438	G	A	38	0.842	5	38.800	1.643	32	36.062	4.111	5	29	OR10R2	exonic	synonymous_SNV
GBM_A_T4--8	chr1:158450438	G	A	73	0.616	28	37.214	6.460	45	36.111	6.110	27	40	OR10R2	exonic	synonymous_SNV
GBM_A_T4--GL	chr1:158450438	G	NA	39	0	39	36.795	3.578	0	0	0	37	0	OR10R2	exonic	synonymous_SNV
GBM_A_T4--1	chr1:209880509	A	NA	63	0	21	35.238	5.205	0	0	0	20	0	HSD11B1	intronic	NA
GBM_A_T4--2	chr1:209880509	A	NA	99	0	34	35.147	4.513	0	0	0	31	0	HSD11B1	intronic	NA
GBM_A_T4--3	chr1:209880509	A	NA	138	0	35	34.743	3.372	0	0	0	34	0	HSD11B1	intronic	NA
GBM_A_T4--4	chr1:209880509	A	NA	85	0	20	36.000	2.753	0	0	0	20	0	HSD11B1	intronic	NA
GBM_A_T4--5	chr1:209880509	A	NA	76	0	25	36.400	3.640	0	0	0	23	0	HSD11B1	intronic	NA
GBM_A_T4--6	chr1:209880509	A	NA	91	0	35	35.200	4.928	0	0	0	33	0	HSD11B1	intronic	NA
GBM_A_T4--7	chr1:209880509	A	G	97	0.062	19	34.895	5.343	6	31.167	4.491	18	5	HSD11B1	intronic	NA
GBM_A_T4--8	chr1:209880509	A	NA	102	0	23	35.087	5.359	0	0	0	21	0	HSD11B1	intronic	NA
GBM_A_T4--GL	chr1:209880509	A	NA	82	0	41	35.268	4.422	0	0	0	38	0	HSD11B1	intronic	NA
GBM_A_T4--1	chr1:212532125	C	NA	45	0	45	36.956	2.225	0	0	0	45	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr1:212532125	C	NA	53	0	53	36.434	2.886	0	0	0	51	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr1:212532125	C	A	62	0.016	61	36.443	3.801	1	37.000	0.000	59	1	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr1:212532125	C	A	36	0.139	31	36.516	3.265	5	36.800	2.490	29	5	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr1:212532125	C	NA	38	0	38	35.553	6.079	0	0	0	34	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr1:212532125	C	NA	40	0	40	37.125	2.830	0	0	0	39	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr1:212532125	C	NA	61	0	61	36.689	3.133	0	0	0	59	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr1:212532125	C	NA	46	0	46	35.717	6.188	0	0	0	42	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr1:212532125	C	NA	49	0	49	36.367	3.352	0	0	0	47	0	PPP2R5A	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr12:3948745	G	A	31	0.194	25	38.400	2.784	6	36.833	2.229	24	6	PARP11	intronic	NA
GBM_A_T4--2	chr12:3948745	G	A	88	0.068	82	36.793	4.700	6	37.500	1.225	76	6	PARP11	intronic	NA
GBM_A_T4--3	chr12:3948745	G	A	87	0.023	85	36.976	4.761	2	27.500	7.778	80	1	PARP11	intronic	NA
GBM_A_T4--4	chr12:3948745	G	A	50	0.100	45	35.911	7.019	5	36.200	1.789	41	5	PARP11	intronic	NA
GBM_A_T4--5	chr12:3948745	G	A	47	0.170	39	35.974	4.528	8	36.000	4.243	35	7	PARP11	intronic	NA
GBM_A_T4--6	chr12:3948745	G	A	62	0.097	56	36.214	6.175	6	32.000	8.556	50	5	PARP11	intronic	NA
GBM_A_T4--7	chr12:3948745	G	A	45	0.333	30	37.833	3.291	15	36.600	2.131	28	15	PARP11	intronic	NA
GBM_A_T4--8	chr12:3948745	G	A	86	0.058	81	35.802	5.651	5	29.400	10.550	72	3	PARP11	intronic	NA
GBM_A_T4--GL	chr12:3948745	G	NA	55	0	55	36.673	4.761	0	0	0	49	0	PARP11	intronic	NA
GBM_A_T4--1	chr12:7926369	C	T	29	0.069	27	34.296	7.508	2	37.000	0.000	22	2	NANOGNB	intronic	NA
GBM_A_T4--2	chr12:7926369	C	NA	38	0	38	34.368	8.512	0	0	0	32	0	NANOGNB	intronic	NA
GBM_A_T4--3	chr12:7926369	C	T	48	0.083	44	35.386	8.130	4	20.500	16.823	39	2	NANOGNB	intronic	NA
GBM_A_T4--4	chr12:7926369	C	T	31	0.258	23	37.522	3.132	8	36.000	1.852	22	8	NANOGNB	intronic	NA
GBM_A_T4--5	chr12:7926369	C	T	36	0.083	32	35.312	6.250	3	33.000	0.000	30	3	NANOGNB	intronic	NA
GBM_A_T4--6	chr12:7926369	C	T	22	0.136	19	33.789	9.028	3	37.000	0.000	16	3	NANOGNB	intronic	NA
GBM_A_T4--7	chr12:7926369	C	T	43	0.070	40	37.475	3.427	3	34.333	2.309	39	3	NANOGNB	intronic	NA
GBM_A_T4--8	chr12:7926369	C	T	25	0.080	23	34.478	6.653	2	32.000	7.071	18	1	NANOGNB	intronic	NA
GBM_A_T4--GL	chr12:7926369	C	NA	41	0	37	35.595	7.826	0	0	0	34	0	NANOGNB	intronic	NA
GBM_A_T4--1	chr12:94818791	A	G	49	0.224	38	32.395	8.281	11	34.273	3.133	30	10	CCDC41	intronic	NA
GBM_A_T4--2	chr12:94818791	A	NA	59	0	59	34.068	7.379	0	0	0	49	0	CCDC41	intronic	NA
GBM_A_T4--3	chr12:94818791	A	G	61	0.033	59	34.610	6.515	2	35.000	2.828	48	2	CCDC41	intronic	NA
GBM_A_T4--4	chr12:94818791	A	NA	37	0	37	34.216	6.750	0	0	0	31	0	CCDC41	intronic	NA
GBM_A_T4--5	chr12:94818791	A	NA	45	0	45	34.800	6.203	0	0	0	39	0	CCDC41	intronic	NA
GBM_A_T4--6	chr12:94818791	A	NA	50	0	50	32.900	7.407	0	0	0	36	0	CCDC41	intronic	NA
GBM_A_T4--7	chr12:94818791	A	NA	59	0	59	34.881	6.542	0	0	0	52	0	CCDC41	intronic	NA
GBM_A_T4--8	chr12:94818791	A	G	45	0.022	44	34.909	5.582	1	33.000	0.000	40	1	CCDC41	intronic	NA
GBM_A_T4--GL	chr12:94818791	A	NA	41	0	41	33.171	7.235	0	0	0	30	0	CCDC41	intronic	NA
GBM_A_T4--1	chr13:101192088	A	T	34	0.206	27	30.296	9.012	7	35.857	1.952	19	7	GGACT	intronic	NA
GBM_A_T4--2	chr13:101192088	A	T	28	0.179	23	30.348	8.419	5	35.400	2.191	13	5	GGACT	intronic	NA
GBM_A_T4--3	chr13:101192088	A	T	44	0.205	34	30.088	8.826	9	33.556	4.773	20	8	GGACT	intronic	NA
GBM_A_T4--4	chr13:101192088	A	T	34	0.118	29	32.103	7.447	4	29.500	9.849	22	3	GGACT	intronic	NA
GBM_A_T4--5	chr13:101192088	A	T	43	0.186	35	32.371	6.562	8	34.250	3.536	25	7	GGACT	intronic	NA
GBM_A_T4--6	chr13:101192088	A	T	47	0.043	45	29.022	9.946	2	37.000	0.000	26	2	GGACT	intronic	NA
GBM_A_T4--7	chr13:101192088	A	T	37	0.081	34	27.882	7.995	3	32.000	8.660	13	2	GGACT	intronic	NA
GBM_A_T4--8	chr13:101192088	A	T	31	0.097	28	27.643	10.812	3	35.667	2.309	15	3	GGACT	intronic	NA
GBM_A_T4--GL	chr13:101192088	A	NA	38	0	38	30.737	8.507	0	0	0	25	0	GGACT	intronic	NA
GBM_A_T4--1	chr13:111145427	T	NA	58	0	29	34.862	3.148	0	0	0	27	0	COL4A2	intronic	NA
GBM_A_T4--2	chr13:111145427	T	NA	93	0	68	33.544	5.645	0	0	0	58	0	COL4A2	intronic	NA
GBM_A_T4--3	chr13:111145427	T	C	67	0.254	50	33.520	3.770	17	37.059	1.919	42	17	COL4A2	intronic	NA
GBM_A_T4--4	chr13:111145427	T	NA	42	0	26	34.654	3.111	0	0	0	24	0	COL4A2	intronic	NA
GBM_A_T4--5	chr13:111145427	T	NA	52	0	29	33.241	6.209	0	0	0	23	0	COL4A2	intronic	NA
GBM_A_T4--6	chr13:111145427	T	NA	57	0	33	33.485	6.428	0	0	0	28	0	COL4A2	intronic	NA
GBM_A_T4--7	chr13:111145427	T	NA	54	0	36	33.222	5.856	0	0	0	27	0	COL4A2	intronic	NA
GBM_A_T4--8	chr13:111145427	T	NA	63	0	34	32.706	6.590	0	0	0	29	0	COL4A2	intronic	NA
GBM_A_T4--GL	chr13:111145427	T	NA	70	0	53	33.434	7.021	0	0	0	47	0	COL4A2	intronic	NA
GBM_A_T4--1	chr13:111145428	G	NA	58	0	29	33.517	6.127	0	0	0	26	0	COL4A2	intronic	NA
GBM_A_T4--2	chr13:111145428	G	NA	93	0	68	33.706	5.055	0	0	0	61	0	COL4A2	intronic	NA
GBM_A_T4--3	chr13:111145428	G	A	67	0.254	50	33.980	2.669	17	37.059	3.172	47	16	COL4A2	intronic	NA
GBM_A_T4--4	chr13:111145428	G	NA	43	0	27	34.148	2.970	0	0	0	25	0	COL4A2	intronic	NA
GBM_A_T4--5	chr13:111145428	G	NA	52	0	29	33.103	5.101	0	0	0	23	0	COL4A2	intronic	NA
GBM_A_T4--6	chr13:111145428	G	NA	57	0	33	34.121	5.036	0	0	0	30	0	COL4A2	intronic	NA
GBM_A_T4--7	chr13:111145428	G	NA	54	0	36	34.806	3.823	0	0	0	33	0	COL4A2	intronic	NA
GBM_A_T4--8	chr13:111145428	G	NA	63	0	34	33.794	4.879	0	0	0	29	0	COL4A2	intronic	NA
GBM_A_T4--GL	chr13:111145428	G	NA	72	0	55	34.345	6.589	0	0	0	50	0	COL4A2	intronic	NA
GBM_A_T4--1	chr13:25266688	C	NA	36	0	36	36.806	3.632	0	0	0	34	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr13:25266688	C	NA	40	0	40	36.325	3.731	0	0	0	37	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr13:25266688	C	NA	45	0	45	36.667	3.337	0	0	0	43	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr13:25266688	C	NA	27	0	27	36.259	3.108	0	0	0	26	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr13:25266688	C	A	25	0.200	20	37.000	3.129	5	31.200	10.305	19	3	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr13:25266688	C	NA	28	0	27	36.593	3.434	0	0	0	25	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr13:25266688	C	NA	34	0	34	36.706	3.623	0	0	0	33	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr13:25266688	C	NA	49	0	49	35.939	4.520	0	0	0	45	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr13:25266688	C	NA	34	0	34	35.176	4.833	0	0	0	29	0	ATP12A	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr13:32340159	A	G	78	0.103	46	36.652	2.243	8	36.500	1.414	46	8	RXFP2	exonic	synonymous_SNV
GBM_A_T4--2	chr13:32340159	A	G	58	0.086	38	35.763	4.451	5	35.400	2.191	36	5	RXFP2	exonic	synonymous_SNV
GBM_A_T4--3	chr13:32340159	A	G	82	0.024	56	36.393	3.155	2	35.000	2.828	53	2	RXFP2	exonic	synonymous_SNV
GBM_A_T4--4	chr13:32340159	A	G	83	0.096	54	37.241	2.900	8	35.000	2.138	53	8	RXFP2	exonic	synonymous_SNV
GBM_A_T4--5	chr13:32340159	A	G	95	0.032	61	36.984	2.778	3	34.333	2.309	60	3	RXFP2	exonic	synonymous_SNV
GBM_A_T4--6	chr13:32340159	A	G	76	0.118	42	36.452	4.324	9	35.222	2.108	40	9	RXFP2	exonic	synonymous_SNV
GBM_A_T4--7	chr13:32340159	A	G	74	0.095	43	37.047	2.193	7	35.857	1.952	43	7	RXFP2	exonic	synonymous_SNV
GBM_A_T4--8	chr13:32340159	A	G	42	0.095	25	36.160	2.809	4	36.000	2.000	24	4	RXFP2	exonic	synonymous_SNV
GBM_A_T4--GL	chr13:32340159	A	NA	84	0	84	36.643	2.745	0	0	0	81	0	RXFP2	exonic	synonymous_SNV
GBM_A_T4--1	chr13:39598698	T	A	65	0.062	61	30.098	10.449	4	35.000	2.309	41	4	PROSER1	intronic	NA
GBM_A_T4--2	chr13:39598698	T	A	62	0.113	55	30.764	9.278	7	35.286	2.138	33	7	PROSER1	intronic	NA
GBM_A_T4--3	chr13:39598698	T	A	68	0.059	64	29.969	9.931	4	25.000	11.662	42	2	PROSER1	intronic	NA
GBM_A_T4--4	chr13:39598698	T	A	58	0.069	53	32.113	8.827	4	22.750	14.705	38	2	PROSER1	intronic	NA
GBM_A_T4--5	chr13:39598698	T	A	70	0.129	61	31.984	8.350	9	35.667	2.000	47	9	PROSER1	intronic	NA
GBM_A_T4--6	chr13:39598698	T	NA	77	0	70	30.529	9.798	0	0	0	47	0	PROSER1	intronic	NA
GBM_A_T4--7	chr13:39598698	T	NA	59	0	54	30.333	8.670	0	0	0	36	0	PROSER1	intronic	NA
GBM_A_T4--8	chr13:39598698	T	A	49	0.224	38	30.763	9.350	11	31.636	8.698	26	10	PROSER1	intronic	NA
GBM_A_T4--GL	chr13:39598698	T	NA	60	0	59	31.983	8.784	0	0	0	41	0	PROSER1	intronic	NA
GBM_A_T4--1	chr14:106090769	C	T	21	0.333	14	34.929	5.876	7	34.429	3.780	12	6	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--2	chr14:106090769	C	T	104	0.298	73	35.288	5.952	31	35.387	5.982	65	27	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--3	chr14:106090769	C	T	75	0.240	57	37.158	4.769	18	33.667	8.353	53	15	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--4	chr14:106090769	C	T	19	0.316	13	36.385	4.388	6	33.333	3.670	11	5	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--5	chr14:106090769	C	T	20	0.250	15	37.000	3.645	5	34.600	2.191	14	5	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--6	chr14:106090769	C	T	28	0.179	23	36.087	5.680	5	34.600	2.191	21	5	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--7	chr14:106090769	C	T	35	0.429	20	36.300	3.164	15	36.933	3.011	19	14	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--8	chr14:106090769	C	T	79	0.203	63	36.492	5.358	16	33.938	4.389	59	13	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--GL	chr14:106090769	C	NA	67	0	67	36.403	4.109	0	0	0	64	0	MIR8071-1(dist=3252),MIR8071-1(dist=15736)	intergenic	NA
GBM_A_T4--1	chr14:106366543	C	T	52	0.500	26	34.423	5.784	26	34.692	4.594	21	21	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--2	chr14:106366543	C	T	80	0.500	40	35.025	5.820	40	36.175	4.187	35	37	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--3	chr14:106366543	C	T	66	0.485	34	36.382	3.676	32	36.562	2.895	33	32	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--4	chr14:106366543	C	T	50	0.780	10	35.400	7.276	39	35.487	4.297	9	35	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--5	chr14:106366543	C	T	51	0.431	29	35.276	6.595	22	36.409	4.102	26	20	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--6	chr14:106366543	C	T	67	0.761	16	32.062	8.103	51	34.275	5.848	12	44	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--7	chr14:106366543	C	T	56	0.625	21	36.095	3.345	35	34.629	6.852	20	32	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--8	chr14:106366543	C	T	58	0.586	24	35.458	5.124	34	35.500	4.194	20	31	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--GL	chr14:106366543	C	NA	51	0	51	35.667	5.599	0	0	0	44	0	ELK2AP(dist=227399),KIAA0125(dist=17295)	intergenic	NA
GBM_A_T4--1	chr14:21829462	C	NA	59	0	59	37.525	3.766	0	0	0	58	0	SUPT16H	intronic	NA
GBM_A_T4--2	chr14:21829462	C	NA	46	0	46	33.130	10.066	0	0	0	39	0	SUPT16H	intronic	NA
GBM_A_T4--3	chr14:21829462	C	NA	83	0	83	35.542	6.575	0	0	0	77	0	SUPT16H	intronic	NA
GBM_A_T4--4	chr14:21829462	C	NA	56	0	56	36.500	5.500	0	0	0	53	0	SUPT16H	intronic	NA
GBM_A_T4--5	chr14:21829462	C	NA	64	0	64	36.828	3.593	0	0	0	62	0	SUPT16H	intronic	NA
GBM_A_T4--6	chr14:21829462	C	T	70	0.229	54	36.352	4.806	16	34.750	2.049	52	16	SUPT16H	intronic	NA
GBM_A_T4--7	chr14:21829462	C	NA	72	0	72	35.722	6.797	0	0	0	67	0	SUPT16H	intronic	NA
GBM_A_T4--8	chr14:21829462	C	NA	46	0	46	35.826	6.434	0	0	0	42	0	SUPT16H	intronic	NA
GBM_A_T4--GL	chr14:21829462	C	NA	65	0	65	32.631	10.444	0	0	0	54	0	SUPT16H	intronic	NA
GBM_A_T4--1	chr14:77934905	A	T	46	0.043	44	30.795	7.666	2	26.000	15.556	30	1	AHSA1	intronic	NA
GBM_A_T4--2	chr14:77934905	A	NA	52	0	51	29.039	8.307	0	0	0	29	0	AHSA1	intronic	NA
GBM_A_T4--3	chr14:77934905	A	T	87	0.103	78	29.205	8.687	9	30.333	8.411	47	6	AHSA1	intronic	NA
GBM_A_T4--4	chr14:77934905	A	NA	59	0	57	29.737	7.909	0	0	0	37	0	AHSA1	intronic	NA
GBM_A_T4--5	chr14:77934905	A	T	67	0.090	59	30.288	8.552	6	31.333	8.238	39	5	AHSA1	intronic	NA
GBM_A_T4--6	chr14:77934905	A	T	63	0.206	50	28.660	8.243	13	31.692	7.398	27	10	AHSA1	intronic	NA
GBM_A_T4--7	chr14:77934905	A	NA	57	0	57	29.316	8.346	0	0	0	33	0	AHSA1	intronic	NA
GBM_A_T4--8	chr14:77934905	A	T	46	0.196	37	29.054	8.161	9	30.333	8.888	19	7	AHSA1	intronic	NA
GBM_A_T4--GL	chr14:77934905	A	NA	59	0	58	30.034	7.929	0	0	0	35	0	AHSA1	intronic	NA
GBM_A_T4--1	chr14:96728943	C	T	29	0.034	28	34.643	7.818	1	37.000	0.000	24	1	BDKRB1	intronic	NA
GBM_A_T4--2	chr14:96728943	C	NA	34	0	34	35.147	5.924	0	0	0	32	0	BDKRB1	intronic	NA
GBM_A_T4--3	chr14:96728943	C	NA	24	0	24	35.708	4.005	0	0	0	21	0	BDKRB1	intronic	NA
GBM_A_T4--4	chr14:96728943	C	NA	33	0	33	34.303	6.507	0	0	0	26	0	BDKRB1	intronic	NA
GBM_A_T4--5	chr14:96728943	C	NA	35	0	34	34.265	8.486	0	0	0	31	0	BDKRB1	intronic	NA
GBM_A_T4--6	chr14:96728943	C	T	37	0.027	36	33.944	6.895	1	33.000	0.000	31	1	BDKRB1	intronic	NA
GBM_A_T4--7	chr14:96728943	C	NA	41	0	41	35.756	5.122	0	0	0	36	0	BDKRB1	intronic	NA
GBM_A_T4--8	chr14:96728943	C	T	24	0.458	13	34.846	5.320	11	37.636	2.693	11	11	BDKRB1	intronic	NA
GBM_A_T4--GL	chr14:96728943	C	NA	42	0	42	35.738	5.657	0	0	0	39	0	BDKRB1	intronic	NA
GBM_A_T4--1	chr14:96728944	T	NA	29	0	29	36.931	3.798	0	0	0	28	0	BDKRB1	intronic	NA
GBM_A_T4--2	chr14:96728944	T	NA	34	0	34	36.265	2.957	0	0	0	33	0	BDKRB1	intronic	NA
GBM_A_T4--3	chr14:96728944	T	NA	24	0	24	36.500	3.148	0	0	0	23	0	BDKRB1	intronic	NA
GBM_A_T4--4	chr14:96728944	T	NA	32	0	31	36.581	3.443	0	0	0	29	0	BDKRB1	intronic	NA
GBM_A_T4--5	chr14:96728944	T	NA	35	0	35	35.800	6.768	0	0	0	32	0	BDKRB1	intronic	NA
GBM_A_T4--6	chr14:96728944	T	NA	36	0	36	34.556	5.779	0	0	0	30	0	BDKRB1	intronic	NA
GBM_A_T4--7	chr14:96728944	T	NA	41	0	41	37.049	3.788	0	0	0	39	0	BDKRB1	intronic	NA
GBM_A_T4--8	chr14:96728944	T	C	24	0.458	13	36.308	3.568	11	36.545	4.927	12	9	BDKRB1	intronic	NA
GBM_A_T4--GL	chr14:96728944	T	NA	42	0	42	35.405	7.201	0	0	0	39	0	BDKRB1	intronic	NA
GBM_A_T4--1	chr14:96728945	T	NA	29	0	29	37.448	2.487	0	0	0	29	0	BDKRB1	intronic	NA
GBM_A_T4--2	chr14:96728945	T	NA	34	0	34	36.294	3.252	0	0	0	33	0	BDKRB1	intronic	NA
GBM_A_T4--3	chr14:96728945	T	NA	24	0	24	37.083	2.263	0	0	0	24	0	BDKRB1	intronic	NA
GBM_A_T4--4	chr14:96728945	T	NA	32	0	32	37.875	1.930	0	0	0	32	0	BDKRB1	intronic	NA
GBM_A_T4--5	chr14:96728945	T	NA	35	0	35	35.800	7.295	0	0	0	32	0	BDKRB1	intronic	NA
GBM_A_T4--6	chr14:96728945	T	NA	36	0	35	35.800	3.701	0	0	0	32	0	BDKRB1	intronic	NA
GBM_A_T4--7	chr14:96728945	T	NA	41	0	40	36.675	4.747	0	0	0	37	0	BDKRB1	intronic	NA
GBM_A_T4--8	chr14:96728945	T	C	24	0.458	13	36.923	3.252	11	31.091	12.700	12	9	BDKRB1	intronic	NA
GBM_A_T4--GL	chr14:96728945	T	NA	42	0	42	35.619	6.552	0	0	0	39	0	BDKRB1	intronic	NA
GBM_A_T4--1	chr15:74287109	C	NA	26	0	26	36.462	3.325	0	0	0	25	0	PML	UTR5	NA
GBM_A_T4--2	chr15:74287109	C	NA	34	0	34	34.029	7.649	0	0	0	27	0	PML	UTR5	NA
GBM_A_T4--3	chr15:74287109	C	NA	35	0	35	36.657	2.600	0	0	0	34	0	PML	UTR5	NA
GBM_A_T4--4	chr15:74287109	C	A	25	0.160	21	36.667	4.340	4	36.750	2.872	19	4	PML	UTR5	NA
GBM_A_T4--5	chr15:74287109	C	NA	23	0	23	35.174	7.371	0	0	0	20	0	PML	UTR5	NA
GBM_A_T4--6	chr15:74287109	C	NA	30	0	30	34.333	7.862	0	0	0	25	0	PML	UTR5	NA
GBM_A_T4--7	chr15:74287109	C	NA	29	0	29	37.690	2.377	0	0	0	29	0	PML	UTR5	NA
GBM_A_T4--8	chr15:74287109	C	NA	24	0	24	37.208	3.148	0	0	0	23	0	PML	UTR5	NA
GBM_A_T4--GL	chr15:74287109	C	NA	45	0	45	34.467	6.178	0	0	0	38	0	PML	UTR5	NA
GBM_A_T4--1	chr15:75977817	C	NA	17	0	17	35.294	4.269	0	0	0	15	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr15:75977817	C	NA	42	0	42	34.429	6.259	0	0	0	36	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr15:75977817	C	NA	20	0	20	36.700	2.793	0	0	0	20	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr15:75977817	C	A	18	0.222	14	34.429	6.745	4	38.500	1.732	12	4	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr15:75977817	C	NA	15	0	15	35.667	1.952	0	0	0	15	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr15:75977817	C	NA	29	0	29	34.793	4.321	0	0	0	25	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr15:75977817	C	NA	25	0	25	34.520	6.494	0	0	0	23	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr15:75977817	C	NA	28	0	28	35.786	2.973	0	0	0	27	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr15:75977817	C	NA	41	0	41	35.561	5.348	0	0	0	36	0	CSPG4	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr16:33975389	A	G	35	0.257	26	36.846	4.342	9	37.556	4.216	24	8	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--2	chr16:33975389	A	G	28	0.250	21	37.714	2.432	7	39.143	1.464	21	7	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--3	chr16:33975389	A	G	31	0.194	25	38.320	3.172	6	37.333	2.582	24	6	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--4	chr16:33975389	A	G	23	0.087	21	37.476	3.027	2	38.500	2.121	20	2	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--5	chr16:33975389	A	G	28	0.179	23	37.130	4.060	5	38.800	1.643	22	5	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--6	chr16:33975389	A	G	29	0.172	24	39.083	1.792	5	37.400	2.881	24	5	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--7	chr16:33975389	A	G	28	0.143	24	36.708	4.477	4	36.000	2.000	22	4	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--8	chr16:33975389	A	G	27	0.185	22	34.818	6.359	5	37.400	2.881	17	5	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--GL	chr16:33975389	A	NA	42	0	41	37.073	4.034	0	0	0	38	0	LINC00273(dist=12886),UBE2MP1(dist=428413)	intergenic	NA
GBM_A_T4--1	chr16:4835793	A	G	43	0.116	38	32.816	5.968	5	36.200	1.789	32	5	SEPT12	intronic	NA
GBM_A_T4--2	chr16:4835793	A	G	45	0.156	37	32.865	6.206	7	34.429	3.780	30	6	SEPT12	intronic	NA
GBM_A_T4--3	chr16:4835793	A	G	52	0.058	49	33.612	4.429	3	35.667	2.309	42	3	SEPT12	intronic	NA
GBM_A_T4--4	chr16:4835793	A	G	50	0.060	47	34.064	4.341	3	37.000	0.000	42	3	SEPT12	intronic	NA
GBM_A_T4--5	chr16:4835793	A	NA	28	0	27	34.630	3.341	0	0	0	26	0	SEPT12	intronic	NA
GBM_A_T4--6	chr16:4835793	A	G	41	0.098	37	34.838	2.723	4	35.000	2.309	35	4	SEPT12	intronic	NA
GBM_A_T4--7	chr16:4835793	A	NA	45	0	44	33.068	5.744	0	0	0	37	0	SEPT12	intronic	NA
GBM_A_T4--8	chr16:4835793	A	G	47	0.149	40	33.925	4.682	7	30.571	8.677	35	5	SEPT12	intronic	NA
GBM_A_T4--GL	chr16:4835793	A	NA	50	0	48	33.417	5.914	0	0	0	40	0	SEPT12	intronic	NA
GBM_A_T4--1	chr17:18220051	C	A	36	0.167	30	35.733	5.152	6	37.333	2.582	28	6	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr17:18220051	C	NA	113	0	112	36.312	3.870	0	0	0	105	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr17:18220051	C	NA	108	0	108	36.509	4.389	0	0	0	103	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr17:18220051	C	NA	38	0	38	35.632	4.744	0	0	0	32	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr17:18220051	C	NA	39	0	39	37.154	2.661	0	0	0	39	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr17:18220051	C	NA	40	0	40	37.075	3.452	0	0	0	38	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr17:18220051	C	NA	60	0	60	36.017	4.196	0	0	0	53	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr17:18220051	C	NA	100	0	98	36.143	5.151	0	0	0	91	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr17:18220051	C	NA	50	0	50	37.260	2.648	0	0	0	50	0	SMCR8	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr17:22247108	A	NA	13	0	13	38.308	2.175	0	0	0	13	0	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--2	chr17:22247108	A	NA	21	0	21	36.429	6.454	0	0	0	19	0	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--3	chr17:22247108	A	C	25	0.040	24	37.417	4.010	1	40.000	0.000	22	1	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--4	chr17:22247108	A	C	17	0.235	13	37.231	2.774	4	35.250	5.679	13	3	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--5	chr17:22247108	A	C	10	0.200	8	35.875	4.612	2	37.000	0.000	7	2	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--6	chr17:22247108	A	NA	11	0	11	39.455	1.214	0	0	0	11	0	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--7	chr17:22247108	A	NA	20	0	20	37.650	2.134	0	0	0	20	0	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--8	chr17:22247108	A	C	20	0.050	19	37.526	2.118	1	40.000	0.000	19	1	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--GL	chr17:22247108	A	NA	34	0	34	37.029	5.132	0	0	0	31	0	MTRNR2L1(dist=223117),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--1	chr17:22247114	A	NA	13	0	13	36.385	3.280	0	0	0	12	0	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--2	chr17:22247114	A	NA	21	0	21	36.429	6.454	0	0	0	19	0	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--3	chr17:22247114	A	G	25	0.040	24	37.875	3.167	1	37.000	0.000	23	1	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--4	chr17:22247114	A	G	17	0.235	13	38.077	2.139	4	35.750	3.403	13	4	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--5	chr17:22247114	A	G	11	0.182	9	34.222	7.823	2	37.000	0.000	8	2	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--6	chr17:22247114	A	NA	11	0	11	39.091	2.212	0	0	0	11	0	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--7	chr17:22247114	A	NA	21	0	21	37.810	2.892	0	0	0	20	0	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--8	chr17:22247114	A	G	22	0.091	20	37.850	2.961	2	35.000	2.828	19	2	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--GL	chr17:22247114	A	NA	34	0	34	38.000	2.511	0	0	0	34	0	MTRNR2L1(dist=223123),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--1	chr17:22252130	G	NA	13	0	12	38.167	2.209	0	0	0	12	0	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--2	chr17:22252130	G	NA	39	0	39	35.846	5.024	0	0	0	36	0	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--3	chr17:22252130	G	C	26	0.115	23	36.826	2.887	3	35.333	4.041	23	3	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--4	chr17:22252130	G	C	20	0.050	19	36.105	4.370	1	33.000	0.000	18	1	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--5	chr17:22252130	G	NA	18	0	18	37.500	2.503	0	0	0	18	0	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--6	chr17:22252130	G	C	14	0.286	10	36.800	4.104	4	36.750	2.872	9	4	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--7	chr17:22252130	G	C	27	0.074	25	37.960	2.354	2	38.500	2.121	25	2	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--8	chr17:22252130	G	C	30	0.067	28	35.179	6.092	2	38.500	2.121	24	2	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--GL	chr17:22252130	G	NA	41	0	39	36.718	3.839	0	0	0	37	0	MTRNR2L1(dist=228139),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--1	chr17:48245296	C	G	83	0.072	77	35.987	5.576	6	38.500	1.643	73	6	SGCA	intronic	NA
GBM_A_T4--2	chr17:48245296	C	NA	137	0	137	36.569	4.114	0	0	0	127	0	SGCA	intronic	NA
GBM_A_T4--3	chr17:48245296	C	G	130	0.008	129	36.589	4.527	1	37.000	0.000	121	1	SGCA	intronic	NA
GBM_A_T4--4	chr17:48245296	C	G	59	0.017	58	36.603	3.514	1	37.000	0.000	55	1	SGCA	intronic	NA
GBM_A_T4--5	chr17:48245296	C	G	57	0.158	48	36.583	4.766	9	33.889	7.607	44	8	SGCA	intronic	NA
GBM_A_T4--6	chr17:48245296	C	G	76	0.039	73	36.973	4.737	3	38.000	1.732	70	3	SGCA	intronic	NA
GBM_A_T4--7	chr17:48245296	C	NA	127	0	127	36.457	4.031	0	0	0	121	0	SGCA	intronic	NA
GBM_A_T4--8	chr17:48245296	C	NA	111	0	110	36.873	3.747	0	0	0	105	0	SGCA	intronic	NA
GBM_A_T4--GL	chr17:48245296	C	NA	136	0	136	36.676	4.147	0	0	0	128	0	SGCA	intronic	NA
GBM_A_T4--1	chr17:48646309	C	NA	22	0	22	33.091	6.531	0	0	0	17	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--2	chr17:48646309	C	NA	39	0	39	33.051	8.020	0	0	0	32	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--3	chr17:48646309	C	NA	40	0	40	34.275	4.956	0	0	0	33	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--4	chr17:48646309	C	NA	25	0	25	34.400	5.354	0	0	0	21	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--5	chr17:48646309	C	A	16	0.188	13	35.923	4.734	3	39.000	1.732	12	3	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--6	chr17:48646309	C	NA	20	0	20	34.600	5.698	0	0	0	18	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--7	chr17:48646309	C	A	29	0.069	27	35.370	4.789	2	38.500	2.121	23	2	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--8	chr17:48646309	C	NA	48	0	47	34.426	5.981	0	0	0	41	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--GL	chr17:48646309	C	NA	38	0	37	34.135	6.192	0	0	0	30	0	CACNA1G	exonic	synonymous_SNV
GBM_A_T4--1	chr17:7578526	C	T	38	0.658	13	36.769	2.488	25	33.440	9.125	13	20	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr17:7578526	C	T	61	0.557	27	36.593	4.971	34	35.559	5.383	25	31	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr17:7578526	C	T	66	0.545	30	37.800	3.428	36	35.361	6.397	28	33	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr17:7578526	C	T	20	0.750	5	38.200	1.643	15	36.800	2.305	5	15	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr17:7578526	C	T	29	0.414	17	35.353	5.338	12	35.250	2.491	14	12	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr17:7578526	C	T	34	0.676	11	38.000	2.236	23	35.696	5.209	11	20	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr17:7578526	C	T	32	0.625	12	35.833	6.873	20	33.900	5.955	11	16	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr17:7578526	C	T	71	0.592	29	38.379	2.077	42	35.548	5.347	29	38	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr17:7578526	C	NA	39	0	39	38.308	2.117	0	0	0	39	0	TP53	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr17:7755766	T	G	14	0.571	6	32.667	8.802	8	33.500	1.414	5	8	KDM6B	intronic	NA
GBM_A_T4--2	chr17:7755766	T	NA	88	0	39	32.692	7.057	0	0	0	29	0	KDM6B	intronic	NA
GBM_A_T4--3	chr17:7755766	T	NA	66	0	27	33.778	5.515	0	0	0	23	0	KDM6B	intronic	NA
GBM_A_T4--4	chr17:7755766	T	NA	30	0	15	35.000	3.982	0	0	0	13	0	KDM6B	intronic	NA
GBM_A_T4--5	chr17:7755766	T	G	18	0.278	13	33.538	6.463	5	35.400	2.191	11	5	KDM6B	intronic	NA
GBM_A_T4--6	chr17:7755766	T	NA	25	0	18	35.000	3.361	0	0	0	16	0	KDM6B	intronic	NA
GBM_A_T4--7	chr17:7755766	T	G	41	0.439	23	32.130	5.715	18	33.944	7.231	15	17	KDM6B	intronic	NA
GBM_A_T4--8	chr17:7755766	T	NA	72	0	45	32.067	7.417	0	0	0	32	0	KDM6B	intronic	NA
GBM_A_T4--GL	chr17:7755766	T	NA	57	0	40	33.275	5.729	0	0	0	33	0	KDM6B	intronic	NA
GBM_A_T4--1	chr18:52896164	T	C	103	0.078	94	32.894	7.595	8	35.375	5.829	76	7	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr18:52896164	T	C	165	0.006	164	33.171	6.489	1	37.000	0.000	134	1	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr18:52896164	T	C	172	0.070	158	33.918	6.085	12	35.250	2.491	134	12	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr18:52896164	T	NA	113	0	112	33.946	5.104	0	0	0	93	0	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr18:52896164	T	C	92	0.065	85	35.094	4.755	6	33.833	6.014	80	5	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr18:52896164	T	NA	130	0	129	34.085	5.537	0	0	0	111	0	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr18:52896164	T	C	117	0.034	113	34.142	5.973	4	36.750	2.872	97	4	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr18:52896164	T	C	186	0.253	138	33.188	6.818	47	35.638	4.613	114	44	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr18:52896164	T	NA	123	0	121	34.471	5.258	0	0	0	104	0	TCF4	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr19:10394309	G	NA	30	0	30	35.833	3.465	0	0	0	29	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr19:10394309	G	NA	53	0	53	35.491	5.427	0	0	0	49	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr19:10394309	G	NA	38	0	38	35.632	3.837	0	0	0	34	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr19:10394309	G	NA	25	0	25	35.440	3.787	0	0	0	24	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr19:10394309	G	A	17	0.176	14	34.143	4.222	3	38.000	1.732	13	3	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr19:10394309	G	NA	34	0	34	35.588	3.948	0	0	0	31	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr19:10394309	G	NA	39	0	39	34.667	5.023	0	0	0	35	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr19:10394309	G	NA	41	0	41	35.902	3.382	0	0	0	38	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr19:10394309	G	NA	35	0	35	34.657	6.082	0	0	0	31	0	ICAM1	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr19:48657077	T	NA	15	0	8	32.250	7.246	0	0	0	7	0	LIG1	intronic	NA
GBM_A_T4--2	chr19:48657077	T	NA	82	0	43	31.628	8.616	0	0	0	33	0	LIG1	intronic	NA
GBM_A_T4--3	chr19:48657077	T	NA	64	0	43	31.419	8.517	0	0	0	30	0	LIG1	intronic	NA
GBM_A_T4--4	chr19:48657077	T	A	16	0.250	12	35.000	4.612	4	34.000	2.000	11	4	LIG1	intronic	NA
GBM_A_T4--5	chr19:48657077	T	A	18	0.167	15	32.133	7.318	3	34.333	2.309	13	3	LIG1	intronic	NA
GBM_A_T4--6	chr19:48657077	T	A	22	0.227	16	36.250	2.864	5	34.600	2.191	16	5	LIG1	intronic	NA
GBM_A_T4--7	chr19:48657077	T	NA	24	0	9	32.889	10.458	0	0	0	8	0	LIG1	intronic	NA
GBM_A_T4--8	chr19:48657077	T	NA	70	0	36	33.333	7.103	0	0	0	29	0	LIG1	intronic	NA
GBM_A_T4--GL	chr19:48657077	T	NA	40	0	40	32.150	8.643	0	0	0	30	0	LIG1	intronic	NA
GBM_A_T4--1	chr19:50906823	C	T	43	0.047	41	34.683	5.601	2	36.500	4.950	35	2	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr19:50906823	C	T	52	0.077	48	35.479	5.554	4	34.000	2.000	44	4	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr19:50906823	C	T	59	0.017	58	35.121	4.746	1	37.000	0.000	52	1	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr19:50906823	C	NA	27	0	27	34.593	4.940	0	0	0	22	0	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr19:50906823	C	T	44	0.114	39	35.385	5.941	5	36.000	3.000	37	5	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr19:50906823	C	T	42	0.143	36	36.528	3.598	6	36.333	1.633	34	6	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr19:50906823	C	T	25	0.280	18	35.889	3.066	7	36.143	3.185	17	7	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr19:50906823	C	T	38	0.026	37	36.324	4.289	1	37.000	0.000	34	1	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr19:50906823	C	NA	44	0	44	35.932	4.380	0	0	0	42	0	POLD1	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr19:58385869	C	NA	39	0	39	34.590	6.540	0	0	0	34	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--2	chr19:58385869	C	A	112	0.009	111	37.261	3.963	1	33.000	0.000	105	1	ZNF814	exonic	stopgain_SNV
GBM_A_T4--3	chr19:58385869	C	NA	62	0	62	37.242	3.258	0	0	0	61	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--4	chr19:58385869	C	A	28	0.036	27	37.852	3.183	1	37.000	0.000	26	1	ZNF814	exonic	stopgain_SNV
GBM_A_T4--5	chr19:58385869	C	A	39	0.179	32	37.750	2.110	7	36.429	1.512	32	7	ZNF814	exonic	stopgain_SNV
GBM_A_T4--6	chr19:58385869	C	NA	41	0	41	35.805	3.703	0	0	0	38	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--7	chr19:58385869	C	NA	51	0	51	37.804	2.392	0	0	0	51	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--8	chr19:58385869	C	NA	35	0	35	34.371	8.037	0	0	0	32	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--GL	chr19:58385869	C	NA	42	0	42	36.881	3.416	0	0	0	41	0	ZNF814	exonic	stopgain_SNV
GBM_A_T4--1	chr19:6903846	C	NA	26	0	26	36.269	5.474	0	0	0	24	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--2	chr19:6903846	C	NA	61	0	61	34.475	7.860	0	0	0	52	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--3	chr19:6903846	C	NA	34	0	34	36.147	5.040	0	0	0	31	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--4	chr19:6903846	C	NA	25	0	25	35.760	7.981	0	0	0	23	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--5	chr19:6903846	C	T	18	0.167	15	36.000	5.964	3	39.000	1.732	12	3	EMR1	exonic	synonymous_SNV
GBM_A_T4--6	chr19:6903846	C	NA	27	0	27	35.593	5.116	0	0	0	25	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--7	chr19:6903846	C	NA	42	0	42	35.190	5.325	0	0	0	38	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--8	chr19:6903846	C	NA	49	0	49	35.653	6.126	0	0	0	45	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--GL	chr19:6903846	C	NA	43	0	43	35.860	6.197	0	0	0	37	0	EMR1	exonic	synonymous_SNV
GBM_A_T4--1	chr19:8000049	G	NA	29	0	29	32.207	7.650	0	0	0	24	0	TIMM44	intronic	NA
GBM_A_T4--2	chr19:8000049	G	NA	21	0	21	34.952	5.408	0	0	0	20	0	TIMM44	intronic	NA
GBM_A_T4--3	chr19:8000049	G	NA	42	0	42	32.595	7.821	0	0	0	35	0	TIMM44	intronic	NA
GBM_A_T4--4	chr19:8000049	G	NA	42	0	40	34.075	5.166	0	0	0	37	0	TIMM44	intronic	NA
GBM_A_T4--5	chr19:8000049	G	NA	40	0	40	35.350	3.278	0	0	0	37	0	TIMM44	intronic	NA
GBM_A_T4--6	chr19:8000049	G	NA	31	0	31	32.419	8.298	0	0	0	26	0	TIMM44	intronic	NA
GBM_A_T4--7	chr19:8000049	G	T	42	0.214	33	33.788	5.266	9	34.333	2.000	28	9	TIMM44	intronic	NA
GBM_A_T4--8	chr19:8000049	G	T	30	0.133	25	33.000	6.164	4	36.000	2.000	21	4	TIMM44	intronic	NA
GBM_A_T4--GL	chr19:8000049	G	NA	37	0	37	32.865	7.649	0	0	0	32	0	TIMM44	intronic	NA
GBM_A_T4--1	chr2:159530159	C	A	18	0.167	15	37.667	2.380	3	38.000	1.732	15	3	PKP4	intronic	NA
GBM_A_T4--2	chr2:159530159	C	NA	40	0	40	37.875	2.719	0	0	0	39	0	PKP4	intronic	NA
GBM_A_T4--3	chr2:159530159	C	NA	44	0	44	36.773	3.241	0	0	0	42	0	PKP4	intronic	NA
GBM_A_T4--4	chr2:159530159	C	A	25	0.040	24	36.792	3.134	1	40.000	0.000	23	1	PKP4	intronic	NA
GBM_A_T4--5	chr2:159530159	C	NA	19	0	19	36.263	4.026	0	0	0	17	0	PKP4	intronic	NA
GBM_A_T4--6	chr2:159530159	C	NA	37	0	37	37.351	3.164	0	0	0	36	0	PKP4	intronic	NA
GBM_A_T4--7	chr2:159530159	C	NA	28	0	28	38.250	1.818	0	0	0	28	0	PKP4	intronic	NA
GBM_A_T4--8	chr2:159530159	C	A	43	0.023	42	37.071	3.432	1	40.000	0.000	39	1	PKP4	intronic	NA
GBM_A_T4--GL	chr2:159530159	C	NA	33	0	33	35.242	5.690	0	0	0	27	0	PKP4	intronic	NA
GBM_A_T4--1	chr22:19163622	C	NA	24	0	24	35.750	4.326	0	0	0	21	0	SLC25A1	UTR3	NA
GBM_A_T4--2	chr22:19163622	C	NA	58	0	58	33.741	6.406	0	0	0	49	0	SLC25A1	UTR3	NA
GBM_A_T4--3	chr22:19163622	C	NA	49	0	48	34.042	4.252	0	0	0	44	0	SLC25A1	UTR3	NA
GBM_A_T4--4	chr22:19163622	C	NA	22	0	22	34.182	5.297	0	0	0	19	0	SLC25A1	UTR3	NA
GBM_A_T4--5	chr22:19163622	C	NA	13	0	13	35.077	6.525	0	0	0	12	0	SLC25A1	UTR3	NA
GBM_A_T4--6	chr22:19163622	C	NA	21	0	21	34.714	3.180	0	0	0	19	0	SLC25A1	UTR3	NA
GBM_A_T4--7	chr22:19163622	C	A	26	0.154	21	33.333	5.102	4	35.750	3.403	18	4	SLC25A1	UTR3	NA
GBM_A_T4--8	chr22:19163622	C	NA	38	0	38	34.316	5.210	0	0	0	34	0	SLC25A1	UTR3	NA
GBM_A_T4--GL	chr22:19163622	C	NA	34	0	34	34.294	4.131	0	0	0	28	0	SLC25A1	UTR3	NA
GBM_A_T4--1	chr2:231861071	T	NA	32	0	32	34.312	6.567	0	0	0	27	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--2	chr2:231861071	T	NA	28	0	28	33.429	7.485	0	0	0	21	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--3	chr2:231861071	T	NA	55	0	55	35.309	4.845	0	0	0	49	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--4	chr2:231861071	T	C	32	0.438	18	35.167	3.536	14	33.500	6.211	16	12	SPATA3	exonic	synonymous_SNV
GBM_A_T4--5	chr2:231861071	T	NA	39	0	39	35.410	4.734	0	0	0	35	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--6	chr2:231861071	T	NA	39	0	39	34.231	4.901	0	0	0	33	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--7	chr2:231861071	T	NA	41	0	41	35.951	5.249	0	0	0	37	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--8	chr2:231861071	T	NA	39	0	39	35.846	4.258	0	0	0	37	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--GL	chr2:231861071	T	NA	49	0	49	36.367	2.643	0	0	0	49	0	SPATA3	exonic	synonymous_SNV
GBM_A_T4--1	chr22:42524402	C	NA	23	0	23	36.217	3.029	0	0	0	22	0	CYP2D6	intronic	NA
GBM_A_T4--2	chr22:42524402	C	NA	71	0	71	35.817	4.832	0	0	0	68	0	CYP2D6	intronic	NA
GBM_A_T4--3	chr22:42524402	C	NA	49	0	49	35.347	5.317	0	0	0	46	0	CYP2D6	intronic	NA
GBM_A_T4--4	chr22:42524402	C	A	26	0.154	22	36.182	3.096	4	37.500	3.317	21	4	CYP2D6	intronic	NA
GBM_A_T4--5	chr22:42524402	C	NA	18	0	18	35.833	3.276	0	0	0	17	0	CYP2D6	intronic	NA
GBM_A_T4--6	chr22:42524402	C	NA	33	0	33	35.818	3.432	0	0	0	31	0	CYP2D6	intronic	NA
GBM_A_T4--7	chr22:42524402	C	NA	32	0	32	36.594	6.164	0	0	0	31	0	CYP2D6	intronic	NA
GBM_A_T4--8	chr22:42524402	C	NA	54	0	54	35.370	5.122	0	0	0	49	0	CYP2D6	intronic	NA
GBM_A_T4--GL	chr22:42524402	C	NA	46	0	46	35.652	4.795	0	0	0	42	0	CYP2D6	intronic	NA
GBM_A_T4--1	chr2:85786266	C	NA	42	0	42	36.929	2.433	0	0	0	42	0	GGCX	intronic	NA
GBM_A_T4--2	chr2:85786266	C	NA	83	0	83	35.398	3.803	0	0	0	78	0	GGCX	intronic	NA
GBM_A_T4--3	chr2:85786266	C	NA	83	0	83	36.482	3.674	0	0	0	80	0	GGCX	intronic	NA
GBM_A_T4--4	chr2:85786266	C	NA	28	0	28	37.179	2.907	0	0	0	27	0	GGCX	intronic	NA
GBM_A_T4--5	chr2:85786266	C	A	29	0.138	25	37.320	2.358	4	37.750	1.500	25	4	GGCX	intronic	NA
GBM_A_T4--6	chr2:85786266	C	NA	34	0	34	36.647	3.084	0	0	0	33	0	GGCX	intronic	NA
GBM_A_T4--7	chr2:85786266	C	NA	40	0	40	35.800	2.866	0	0	0	39	0	GGCX	intronic	NA
GBM_A_T4--8	chr2:85786266	C	NA	74	0	74	36.378	2.992	0	0	0	72	0	GGCX	intronic	NA
GBM_A_T4--GL	chr2:85786266	C	NA	50	0	50	37.160	2.113	0	0	0	50	0	GGCX	intronic	NA
GBM_A_T4--1	chr3:15563253	C	NA	18	0	18	33.611	4.742	0	0	0	14	0	COLQ	UTR5	NA
GBM_A_T4--2	chr3:15563253	C	T	69	0.058	65	33.938	8.110	4	28.250	14.953	55	3	COLQ	UTR5	NA
GBM_A_T4--3	chr3:15563253	C	T	52	0.038	48	33.542	7.287	2	32.000	7.071	38	1	COLQ	UTR5	NA
GBM_A_T4--4	chr3:15563253	C	T	27	0.444	9	30.444	11.854	12	34.667	2.060	7	12	COLQ	UTR5	NA
GBM_A_T4--5	chr3:15563253	C	T	15	0.067	14	32.929	6.754	1	37.000	0.000	10	1	COLQ	UTR5	NA
GBM_A_T4--6	chr3:15563253	C	NA	24	0	23	35.870	4.383	0	0	0	20	0	COLQ	UTR5	NA
GBM_A_T4--7	chr3:15563253	C	T	32	0.062	30	33.033	8.892	2	21.500	21.920	23	1	COLQ	UTR5	NA
GBM_A_T4--8	chr3:15563253	C	T	67	0.075	62	33.597	8.494	5	29.400	10.550	52	3	COLQ	UTR5	NA
GBM_A_T4--GL	chr3:15563253	C	NA	41	0	40	35.700	4.664	0	0	0	38	0	COLQ	UTR5	NA
GBM_A_T4--1	chr3:52676066	A	T	42	0.143	36	33.750	7.835	6	32.333	9.158	30	5	PBRM1	intronic	NA
GBM_A_T4--2	chr3:52676066	A	NA	58	0	45	35.222	4.364	0	0	0	41	0	PBRM1	intronic	NA
GBM_A_T4--3	chr3:52676066	A	NA	55	0	45	35.378	4.574	0	0	0	42	0	PBRM1	intronic	NA
GBM_A_T4--4	chr3:52676066	A	NA	45	0	38	35.579	3.929	0	0	0	35	0	PBRM1	intronic	NA
GBM_A_T4--5	chr3:52676066	A	NA	27	0	19	35.789	5.603	0	0	0	18	0	PBRM1	intronic	NA
GBM_A_T4--6	chr3:52676066	A	T	41	0.049	39	33.744	4.967	2	30.000	4.243	33	1	PBRM1	intronic	NA
GBM_A_T4--7	chr3:52676066	A	NA	53	0	36	35.722	3.335	0	0	0	33	0	PBRM1	intronic	NA
GBM_A_T4--8	chr3:52676066	A	NA	50	0	37	35.676	3.881	0	0	0	34	0	PBRM1	intronic	NA
GBM_A_T4--GL	chr3:52676066	A	NA	50	0	39	34.487	6.082	0	0	0	32	0	PBRM1	intronic	NA
GBM_A_T4--1	chr4:169837266	T	NA	21	0	17	37.647	4.499	0	0	0	16	0	PALLD	intronic	NA
GBM_A_T4--2	chr4:169837266	T	C	39	0.077	36	37.611	2.811	3	33.000	0.000	36	3	PALLD	intronic	NA
GBM_A_T4--3	chr4:169837266	T	C	48	0.062	45	38.089	2.762	3	33.000	0.000	44	3	PALLD	intronic	NA
GBM_A_T4--4	chr4:169837266	T	C	17	0.118	15	37.333	2.992	2	33.000	0.000	15	2	PALLD	intronic	NA
GBM_A_T4--5	chr4:169837266	T	NA	13	0	13	38.308	2.175	0	0	0	13	0	PALLD	intronic	NA
GBM_A_T4--6	chr4:169837266	T	C	33	0.242	25	36.280	5.496	8	33.500	1.414	23	8	PALLD	intronic	NA
GBM_A_T4--7	chr4:169837266	T	C	22	0.182	18	36.278	4.430	4	33.000	0.000	17	4	PALLD	intronic	NA
GBM_A_T4--8	chr4:169837266	T	C	28	0.250	21	36.143	7.275	7	33.000	0.000	19	7	PALLD	intronic	NA
GBM_A_T4--GL	chr4:169837266	T	NA	48	0	48	37.500	4.212	0	0	0	47	0	PALLD	intronic	NA
GBM_A_T4--1	chr4:190802498	T	C	61	0.115	54	34.426	5.462	7	33.571	8.677	46	6	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--2	chr4:190802498	T	C	75	0.133	65	34.138	6.773	10	32.600	9.663	56	9	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--3	chr4:190802498	T	C	71	0.155	60	35.517	3.994	11	36.000	4.648	54	9	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--4	chr4:190802498	T	C	68	0.206	54	33.778	7.260	14	34.786	8.666	44	13	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--5	chr4:190802498	T	C	36	0.111	32	35.844	3.655	4	29.000	15.599	30	3	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--6	chr4:190802498	T	C	54	0.204	43	34.930	6.537	11	32.455	10.377	38	8	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--7	chr4:190802498	T	C	67	0.179	55	35.109	4.917	12	28.333	10.807	46	7	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--8	chr4:190802498	T	C	59	0.220	46	34.543	5.299	13	33.231	7.496	38	10	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--GL	chr4:190802498	T	NA	38	0	38	34.079	7.419	0	0	0	33	0	LINC01060(dist=1279436),FRG1(dist=59476)	intergenic	NA
GBM_A_T4--1	chr4:40127916	C	NA	28	0	28	38.607	1.524	0	0	0	28	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--2	chr4:40127916	C	A	25	0.040	24	37.833	1.761	1	40.000	0.000	24	1	N4BP2	exonic	stopgain_SNV
GBM_A_T4--3	chr4:40127916	C	NA	35	0	35	36.743	4.468	0	0	0	33	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--4	chr4:40127916	C	NA	19	0	19	37.632	3.451	0	0	0	18	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--5	chr4:40127916	C	NA	31	0	31	38.097	2.725	0	0	0	30	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--6	chr4:40127916	C	A	18	0.167	15	35.800	8.596	3	38.000	1.732	14	3	N4BP2	exonic	stopgain_SNV
GBM_A_T4--7	chr4:40127916	C	NA	38	0	38	36.579	4.234	0	0	0	37	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--8	chr4:40127916	C	NA	16	0	16	35.875	6.500	0	0	0	14	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--GL	chr4:40127916	C	NA	43	0	43	36.488	6.300	0	0	0	41	0	N4BP2	exonic	stopgain_SNV
GBM_A_T4--1	chr5:178392742	A	C	48	0.042	46	38.087	2.958	2	35.000	2.828	45	2	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr5:178392742	A	NA	79	0	79	36.823	4.305	0	0	0	74	0	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr5:178392742	A	NA	80	0	80	37.150	4.642	0	0	0	76	0	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr5:178392742	A	NA	23	0	23	37.913	2.410	0	0	0	23	0	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr5:178392742	A	C	22	0.227	17	38.176	2.007	5	38.800	1.643	17	5	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr5:178392742	A	NA	48	0	48	37.917	3.175	0	0	0	47	0	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr5:178392742	A	C	68	0.029	66	37.606	2.789	2	38.500	2.121	65	2	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr5:178392742	A	C	54	0.037	52	37.423	4.932	2	38.500	2.121	50	2	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr5:178392742	A	NA	50	0	50	37.700	3.448	0	0	0	47	0	ZNF454	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr6:33408890	A	G	63	0.032	60	34.683	6.013	2	33.000	0.000	56	2	SYNGAP1	intronic	NA
GBM_A_T4--2	chr6:33408890	A	G	213	0.033	205	34.556	6.244	7	22.714	13.175	181	4	SYNGAP1	intronic	NA
GBM_A_T4--3	chr6:33408890	A	G	178	0.045	170	35.476	4.500	8	31.125	10.343	159	7	SYNGAP1	intronic	NA
GBM_A_T4--4	chr6:33408890	A	G	53	0.170	43	36.651	2.689	9	34.333	2.000	42	9	SYNGAP1	intronic	NA
GBM_A_T4--5	chr6:33408890	A	G	59	0.068	54	36.278	1.898	4	35.000	2.309	54	4	SYNGAP1	intronic	NA
GBM_A_T4--6	chr6:33408890	A	G	77	0.065	72	35.625	3.629	5	30.600	9.737	66	3	SYNGAP1	intronic	NA
GBM_A_T4--7	chr6:33408890	A	G	94	0.064	88	34.170	6.204	6	30.500	12.161	78	5	SYNGAP1	intronic	NA
GBM_A_T4--8	chr6:33408890	A	G	200	0.015	197	35.386	4.771	3	25.333	16.862	185	2	SYNGAP1	intronic	NA
GBM_A_T4--GL	chr6:33408890	A	NA	113	0	112	35.429	4.551	0	0	0	106	0	SYNGAP1	intronic	NA
GBM_A_T4--1	chr6:83933621	A	NA	32	0	32	37.375	2.537	0	0	0	32	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr6:83933621	A	NA	41	0	41	35.756	4.549	0	0	0	39	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr6:83933621	A	NA	42	0	42	37.095	2.487	0	0	0	41	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr6:83933621	A	T	24	0.167	20	36.550	4.347	4	37.000	0.000	17	4	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr6:83933621	A	NA	22	0	22	35.455	6.368	0	0	0	19	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr6:83933621	A	NA	25	0	25	36.240	3.700	0	0	0	23	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr6:83933621	A	NA	29	0	29	36.793	3.549	0	0	0	27	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr6:83933621	A	NA	41	0	41	36.195	3.219	0	0	0	39	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr6:83933621	A	NA	34	0	34	37.029	3.538	0	0	0	33	0	ME1	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr6:84234147	C	T	39	0.590	16	36.812	3.250	23	36.130	4.352	16	22	PRSS35	exonic	synonymous_SNV
GBM_A_T4--2	chr6:84234147	C	T	54	0.519	26	35.308	6.769	28	37.929	2.478	24	28	PRSS35	exonic	synonymous_SNV
GBM_A_T4--3	chr6:84234147	C	T	91	0.549	41	36.000	4.433	50	36.500	5.697	38	47	PRSS35	exonic	synonymous_SNV
GBM_A_T4--4	chr6:84234147	C	T	52	0.673	17	36.118	4.428	35	36.600	4.797	15	34	PRSS35	exonic	synonymous_SNV
GBM_A_T4--5	chr6:84234147	C	T	44	0.659	15	37.067	2.052	29	35.690	5.238	15	27	PRSS35	exonic	synonymous_SNV
GBM_A_T4--6	chr6:84234147	C	T	36	0.583	15	36.533	3.681	21	37.190	2.750	14	21	PRSS35	exonic	synonymous_SNV
GBM_A_T4--7	chr6:84234147	C	T	54	0.704	16	36.562	2.421	38	36.711	3.254	16	36	PRSS35	exonic	synonymous_SNV
GBM_A_T4--8	chr6:84234147	C	T	86	0.651	30	36.667	3.556	56	37.214	2.871	28	56	PRSS35	exonic	synonymous_SNV
GBM_A_T4--GL	chr6:84234147	C	NA	41	0	41	35.707	4.303	0	0	0	37	0	PRSS35	exonic	synonymous_SNV
GBM_A_T4--1	chr9:124522499	C	A	22	0.591	8	40.000	0.000	13	33.231	4.438	8	11	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr9:124522499	C	A	49	0.469	26	35.154	6.104	23	32.696	6.839	22	19	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr9:124522499	C	A	60	0.550	26	36.192	3.311	33	33.909	6.161	25	29	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr9:124522499	C	A	27	0.630	10	38.100	2.331	17	32.941	5.043	10	14	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr9:124522499	C	A	30	0.600	12	37.833	2.657	18	35.056	3.873	12	16	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr9:124522499	C	A	25	0.640	9	34.667	4.690	16	31.062	9.815	7	13	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr9:124522499	C	A	33	0.667	11	38.545	2.296	22	34.500	4.080	11	20	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr9:124522499	C	A	55	0.636	20	31.950	9.600	35	31.857	7.708	16	28	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr9:124522499	C	NA	44	0	44	35.932	5.559	0	0	0	42	0	DAB2IP	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr9:446556	C	A	24	0.042	23	33.565	8.322	1	37.000	0.000	19	1	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--2	chr9:446556	C	NA	83	0	83	35.747	3.460	0	0	0	77	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--3	chr9:446556	C	NA	69	0	69	35.420	5.200	0	0	0	62	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--4	chr9:446556	C	NA	30	0	30	36.167	3.659	0	0	0	28	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--5	chr9:446556	C	A	19	0.158	16	35.562	5.228	3	39.000	1.732	14	3	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--6	chr9:446556	C	NA	36	0	36	34.972	6.204	0	0	0	31	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--7	chr9:446556	C	NA	39	0	39	36.051	5.951	0	0	0	37	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--8	chr9:446556	C	NA	72	0	72	35.347	5.630	0	0	0	64	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--GL	chr9:446556	C	NA	53	0	52	36.269	4.183	0	0	0	49	0	DOCK8	exonic	nonsynonymous_SNV
GBM_A_T4--1	chr9:967962	T	C	167	0.126	58	35.879	4.087	21	35.048	2.291	54	21	DMRT1	intronic	NA
GBM_A_T4--2	chr9:967962	T	NA	141	0	85	36.094	4.561	0	0	0	77	0	DMRT1	intronic	NA
GBM_A_T4--3	chr9:967962	T	NA	210	0	116	36.724	4.123	0	0	0	112	0	DMRT1	intronic	NA
GBM_A_T4--4	chr9:967962	T	NA	132	0	48	35.896	5.969	0	0	0	44	0	DMRT1	intronic	NA
GBM_A_T4--5	chr9:967962	T	NA	139	0	64	37.484	3.013	0	0	0	63	0	DMRT1	intronic	NA
GBM_A_T4--6	chr9:967962	T	NA	135	0	55	36.927	3.393	0	0	0	54	0	DMRT1	intronic	NA
GBM_A_T4--7	chr9:967962	T	C	146	0.014	49	37.673	2.617	2	35.000	2.828	49	2	DMRT1	intronic	NA
GBM_A_T4--8	chr9:967962	T	C	154	0.006	67	36.925	4.639	1	40.000	0.000	65	1	DMRT1	intronic	NA
GBM_A_T4--GL	chr9:967962	T	NA	166	0	166	36.627	4.043	0	0	0	157	0	DMRT1	intronic	NA
GBM_A_T4--1	chrY:28817531	G	T	23	0.130	20	37.750	2.489	3	36.667	3.512	20	3	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--2	chrY:28817531	G	T	26	0.077	23	37.391	3.763	2	38.500	2.121	21	2	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--3	chrY:28817531	G	T	19	0.158	16	37.000	6.356	3	38.000	1.732	15	3	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--4	chrY:28817531	G	T	17	0.059	16	37.375	2.579	1	33.000	0.000	16	1	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--5	chrY:28817531	G	T	23	0.130	20	38.250	2.291	3	39.000	1.732	20	3	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--6	chrY:28817531	G	T	13	0.231	10	37.600	5.621	3	36.667	3.512	9	3	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--7	chrY:28817531	G	T	37	0.135	32	37.531	2.771	5	38.200	1.643	32	5	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--8	chrY:28817531	G	T	34	0.118	30	37.800	2.172	4	38.500	1.732	30	4	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T4--GL	chrY:28817531	G	NA	47	0	47	36.787	5.505	0	0	0	44	0	TTTY3B(dist=937996),NONE(dist=NONE)	intergenic	NA
GBM_A_T6--1	1:152691940	C	A	142	0.486	73	37.671	5.354	69	35.870	7.637	71	64	C1orf68	upstream	NA
GBM_A_T6--2	1:152691940	C	A	127	0.472	67	39.060	2.790	60	38.000	5.446	66	58	C1orf68	upstream	NA
GBM_A_T6--3	1:152691940	C	A	109	0.413	64	37.828	6.443	45	37.333	3.766	62	43	C1orf68	upstream	NA
GBM_A_T6--GL	1:152691940	C	NA	103	0	103	38.777	3.659	0	0	0	100	0	C1orf68	upstream	NA
GBM_A_T6--1	12:53126272	G	A	140	0.407	83	35.614	7.477	57	34.912	9.566	79	51	KRT77(dist=29025),KRT76(dist=35667)	intergenic	NA
GBM_A_T6--2	12:53126272	G	A	192	0.458	104	36.769	5.261	88	36.261	7.239	98	83	KRT77(dist=29025),KRT76(dist=35667)	intergenic	NA
GBM_A_T6--3	12:53126272	G	A	183	0.437	103	37.485	5.617	80	37.450	4.717	98	77	KRT77(dist=29025),KRT76(dist=35667)	intergenic	NA
GBM_A_T6--GL	12:53126272	G	NA	145	0	145	38.007	4.393	0	0	0	140	0	KRT77(dist=29025),KRT76(dist=35667)	intergenic	NA
GBM_A_T6--1	14:19606173	T	A	72	0.264	52	37.250	6.006	19	39.368	2.608	48	19	POTEG(dist=21231),DUXAP10(dist=43859)	intergenic	NA
GBM_A_T6--2	14:19606173	T	A	54	0.370	34	38.676	6.664	20	39.150	2.889	33	20	POTEG(dist=21231),DUXAP10(dist=43859)	intergenic	NA
GBM_A_T6--3	14:19606173	T	A	36	0.361	22	36.409	8.472	13	38.231	3.166	20	13	POTEG(dist=21231),DUXAP10(dist=43859)	intergenic	NA
GBM_A_T6--GL	14:19606173	T	NA	51	0	50	38.480	5.471	0	0	0	48	0	POTEG(dist=21231),DUXAP10(dist=43859)	intergenic	NA
GBM_A_T6--1	14:24531921	C	T	90	0.456	49	34.184	9.365	41	35.537	6.477	44	38	LRRC16B	exonic	nonsynonymous_SNV
GBM_A_T6--2	14:24531921	C	T	90	0.544	41	37.610	3.754	49	36.816	5.999	40	47	LRRC16B	exonic	nonsynonymous_SNV
GBM_A_T6--3	14:24531921	C	T	106	0.434	60	35.267	8.830	46	36.522	6.324	53	43	LRRC16B	exonic	nonsynonymous_SNV
GBM_A_T6--GL	14:24531921	C	NA	73	0	73	35.726	7.008	0	0	0	66	0	LRRC16B	exonic	nonsynonymous_SNV
GBM_A_T6--1	15:56385946	T	C	316	0.449	174	37.408	6.217	142	38.303	4.291	165	139	RFX7	exonic	nonsynonymous_SNV
GBM_A_T6--2	15:56385946	T	C	461	0.449	252	37.980	5.445	207	38.382	4.197	241	198	RFX7	exonic	nonsynonymous_SNV
GBM_A_T6--3	15:56385946	T	C	402	0.440	224	38.170	3.999	177	38.401	5.096	220	171	RFX7	exonic	nonsynonymous_SNV
GBM_A_T6--GL	15:56385946	T	NA	324	0	323	38.854	3.232	0	0	0	318	0	RFX7	exonic	nonsynonymous_SNV
GBM_A_T6--1	16:46386779	G	NA	98	0	97	36.072	8.074	0	0	0	86	0	NONE(dist=NONE),ANKRD26P1(dist=116470)	intergenic	NA
GBM_A_T6--2	16:46386779	G	T	21	0.048	20	37.050	4.334	1	41.000	0.000	18	1	NONE(dist=NONE),ANKRD26P1(dist=116470)	intergenic	NA
GBM_A_T6--3	16:46386779	G	T	24	0.167	20	38.500	3.052	4	41.000	0.000	20	4	NONE(dist=NONE),ANKRD26P1(dist=116470)	intergenic	NA
GBM_A_T6--GL	16:46386779	G	NA	58	0	58	37.724	7.485	0	0	0	55	0	NONE(dist=NONE),ANKRD26P1(dist=116470)	intergenic	NA
GBM_A_T6--1	17:3417145	A	G	101	0.020	16	34.125	4.410	2	31.000	0.000	14	2	TRPV3	UTR3	NA
GBM_A_T6--2	17:3417145	A	G	101	0.020	15	36.467	2.924	2	33.000	2.828	15	2	TRPV3	UTR3	NA
GBM_A_T6--3	17:3417145	A	G	122	0.057	15	36.867	5.951	7	31.857	2.035	14	6	TRPV3	UTR3	NA
GBM_A_T6--GL	17:3417145	A	NA	81	0	36	37.722	4.287	0	0	0	34	0	TRPV3	UTR3	NA
GBM_A_T6--1	17:67170804	T	G	311	0.466	165	38.636	3.282	145	38.724	4.157	162	142	ABCA10	exonic	nonsynonymous_SNV
GBM_A_T6--2	17:67170804	T	G	293	0.410	173	38.202	4.395	120	38.792	3.103	168	118	ABCA10	exonic	nonsynonymous_SNV
GBM_A_T6--3	17:67170804	T	G	255	0.451	140	38.907	2.836	115	38.991	4.190	138	114	ABCA10	exonic	nonsynonymous_SNV
GBM_A_T6--GL	17:67170804	T	NA	241	0	241	38.967	3.632	0	0	0	237	0	ABCA10	exonic	nonsynonymous_SNV
GBM_A_T6--1	17:7578403	C	A	134	0.866	18	29.667	10.341	116	32.690	8.964	11	91	TP53	exonic	nonsynonymous_SNV
GBM_A_T6--2	17:7578403	C	A	125	0.848	18	33.833	8.333	106	32.925	9.601	16	81	TP53	exonic	nonsynonymous_SNV
GBM_A_T6--3	17:7578403	C	A	115	0.913	10	33.400	11.806	105	34.305	6.678	8	90	TP53	exonic	nonsynonymous_SNV
GBM_A_T6--GL	17:7578403	C	NA	74	0	74	35.068	6.513	0	0	0	67	0	TP53	exonic	nonsynonymous_SNV
GBM_A_T6--1	19:15565402	G	A	104	0.413	60	29.533	12.912	43	31.953	11.041	47	34	RASAL3	intronic	NA
GBM_A_T6--2	19:15565402	G	A	140	0.421	81	32.457	10.545	59	32.339	9.598	65	50	RASAL3	intronic	NA
GBM_A_T6--3	19:15565402	G	A	131	0.450	72	34.222	5.557	59	33.831	8.611	63	54	RASAL3	intronic	NA
GBM_A_T6--GL	19:15565402	G	NA	77	0	77	32.740	10.618	0	0	0	67	0	RASAL3	intronic	NA
GBM_A_T6--1	19:18897528	C	G	56	0.125	49	28.265	14.550	7	33.571	1.134	33	7	COMP	intronic	NA
GBM_A_T6--2	19:18897528	C	G	62	0.113	54	32.852	11.432	7	29.000	11.958	43	6	COMP	intronic	NA
GBM_A_T6--3	19:18897528	C	G	54	0.019	53	36.377	8.665	1	31.000	0.000	47	1	COMP	intronic	NA
GBM_A_T6--GL	19:18897528	C	NA	40	0	40	32.650	13.535	0	0	0	32	0	COMP	intronic	NA
GBM_A_T6--1	19:21817615	A	G	50	0.180	41	29.854	9.723	9	37.111	2.028	27	9	ZNF429(dist=96536),ZNF100(dist=89228)	intergenic	NA
GBM_A_T6--2	19:21817615	A	G	49	0.265	34	30.441	9.712	13	30.385	12.907	25	10	ZNF429(dist=96536),ZNF100(dist=89228)	intergenic	NA
GBM_A_T6--3	19:21817615	A	G	38	0.184	27	29.778	10.066	7	34.857	2.968	18	7	ZNF429(dist=96536),ZNF100(dist=89228)	intergenic	NA
GBM_A_T6--GL	19:21817615	A	NA	47	0	41	27.171	10.464	0	0	0	21	0	ZNF429(dist=96536),ZNF100(dist=89228)	intergenic	NA
GBM_A_T6--1	20:256493	T	G	79	0.063	34	33.412	9.407	5	33.800	2.683	28	5	C20orf96	intronic	NA
GBM_A_T6--2	20:256493	T	G	74	0.095	30	36.233	6.452	7	33.143	3.671	28	6	C20orf96	intronic	NA
GBM_A_T6--3	20:256493	T	G	68	0.029	32	33.906	9.271	2	24.500	12.021	28	1	C20orf96	intronic	NA
GBM_A_T6--GL	20:256493	T	NA	80	0	45	35.933	5.549	0	0	0	39	0	C20orf96	intronic	NA
GBM_A_T6--1	22:17619009	A	G	115	0.287	82	33.024	9.986	33	34.091	9.244	68	28	CECR5	exonic	nonsynonymous_SNV
GBM_A_T6--2	22:17619009	A	G	83	0.434	45	35.222	6.765	36	34.972	7.197	40	34	CECR5	exonic	nonsynonymous_SNV
GBM_A_T6--3	22:17619009	A	G	84	0.429	48	37.417	3.724	36	35.278	7.061	47	33	CECR5	exonic	nonsynonymous_SNV
GBM_A_T6--GL	22:17619009	A	NA	84	0	84	35.417	8.009	0	0	0	77	0	CECR5	exonic	nonsynonymous_SNV
GBM_A_T6--1	2:220497665	T	C	62	0.177	50	34.620	9.821	11	30.455	11.422	44	9	SLC4A3	exonic	nonsynonymous_SNV
GBM_A_T6--2	2:220497665	T	C	93	0.043	89	35.978	6.265	4	39.000	2.828	85	4	SLC4A3	exonic	nonsynonymous_SNV
GBM_A_T6--3	2:220497665	T	NA	79	0	79	36.544	6.320	0	0	0	75	0	SLC4A3	exonic	nonsynonymous_SNV
GBM_A_T6--GL	2:220497665	T	NA	65	0	65	35.354	6.863	0	0	0	59	0	SLC4A3	exonic	nonsynonymous_SNV
GBM_A_T6--1	2:238271744	G	A	76	0.421	44	37.795	3.400	32	35.312	7.744	42	29	COL6A3	intronic	NA
GBM_A_T6--2	2:238271744	G	A	63	0.381	39	37.179	7.089	24	35.125	8.609	37	20	COL6A3	intronic	NA
GBM_A_T6--3	2:238271744	G	A	70	0.429	40	38.275	4.397	30	36.867	5.716	39	27	COL6A3	intronic	NA
GBM_A_T6--GL	2:238271744	G	NA	55	0	55	37.618	6.273	0	0	0	51	0	COL6A3	intronic	NA
GBM_A_T6--1	22:44586384	G	A	141	0.199	113	36.938	6.061	28	36.071	6.259	107	26	PARVG	intronic	NA
GBM_A_T6--2	22:44586384	G	A	134	0.037	129	37.620	5.520	5	32.200	10.569	123	4	PARVG	intronic	NA
GBM_A_T6--3	22:44586384	G	A	155	0.026	151	38.265	5.101	4	40.250	0.500	146	4	PARVG	intronic	NA
GBM_A_T6--GL	22:44586384	G	NA	100	0	100	37.320	6.334	0	0	0	97	0	PARVG	intronic	NA
GBM_A_T6--1	2:63822517	A	G	79	0.025	77	36.844	5.309	2	39.000	2.828	69	2	MDH1	intronic	NA
GBM_A_T6--2	2:63822517	A	G	89	0.067	83	38.120	5.255	6	37.500	3.937	80	6	MDH1	intronic	NA
GBM_A_T6--3	2:63822517	A	G	82	0.146	70	38.371	4.371	12	38.417	2.875	69	12	MDH1	intronic	NA
GBM_A_T6--GL	2:63822517	A	NA	70	0	70	38.514	5.283	0	0	0	69	0	MDH1	intronic	NA
GBM_A_T6--1	3:100349558	G	C	110	0.373	69	38.710	5.502	41	38.488	4.136	66	39	GPR128	exonic	nonsynonymous_SNV
GBM_A_T6--2	3:100349558	G	C	93	0.473	48	37.896	6.312	44	38.818	2.847	46	44	GPR128	exonic	nonsynonymous_SNV
GBM_A_T6--3	3:100349558	G	C	68	0.382	42	39.810	1.550	26	38.577	3.349	42	25	GPR128	exonic	nonsynonymous_SNV
GBM_A_T6--GL	3:100349558	G	NA	85	0	84	39.274	2.906	0	0	0	83	0	GPR128	exonic	nonsynonymous_SNV
GBM_A_T6--1	3:125195665	C	T	84	0.345	55	37.218	5.855	29	36.345	4.237	53	27	SNX4	intronic	NA
GBM_A_T6--2	3:125195665	C	T	80	0.450	44	36.841	6.654	36	35.778	7.552	42	33	SNX4	intronic	NA
GBM_A_T6--3	3:125195665	C	T	67	0.403	40	38.150	6.569	27	37.296	5.419	38	25	SNX4	intronic	NA
GBM_A_T6--GL	3:125195665	C	NA	74	0	74	39.297	2.386	0	0	0	74	0	SNX4	intronic	NA
GBM_A_T6--1	5:1057463	G	A	42	0.167	34	34.588	6.291	7	36.000	4.041	31	7	SLC12A7	intronic	NA
GBM_A_T6--2	5:1057463	G	A	51	0.020	50	34.020	8.821	1	38.000	0.000	45	1	SLC12A7	intronic	NA
GBM_A_T6--3	5:1057463	G	A	37	0.027	36	37.167	3.858	1	34.000	0.000	34	1	SLC12A7	intronic	NA
GBM_A_T6--GL	5:1057463	G	NA	44	0	44	37.295	5.684	0	0	0	43	0	SLC12A7	intronic	NA
GBM_A_T6--1	7:40221586	T	G	120	0.417	70	35.671	8.337	50	33.980	10.318	61	44	SUGCT	exonic	stopgain_SNV
GBM_A_T6--2	7:40221586	T	G	93	0.387	57	36.544	8.031	36	37.056	3.756	54	34	SUGCT	exonic	stopgain_SNV
GBM_A_T6--3	7:40221586	T	G	83	0.434	46	36.609	8.125	36	38.194	3.354	42	35	SUGCT	exonic	stopgain_SNV
GBM_A_T6--GL	7:40221586	T	NA	97	0	96	36.927	7.006	0	0	0	90	0	SUGCT	exonic	stopgain_SNV
GBM_A_T6R1--GL	10:106026035	A	NA	63	0	63	38.286	2.808	0	0	0	62	0	GSTO1	intronic	NA
GBM_A_T6R1--R1a	10:106026035	A	NA	55	0	55	36.636	4.923	0	0	0	54	0	GSTO1	intronic	NA
GBM_A_T6R1--R1b	10:106026035	A	G	58	0.224	44	36.432	7.076	13	38.077	2.842	40	13	GSTO1	intronic	NA
GBM_A_T6R1--R1c	10:106026035	A	NA	77	0	77	36.039	5.977	0	0	0	71	0	GSTO1	intronic	NA
GBM_A_T6R1--R1d	10:106026035	A	G	54	0.222	42	36.571	6.685	12	37.833	4.282	40	10	GSTO1	intronic	NA
GBM_A_T6R1--GL	10:116606174	G	NA	52	0	52	38.327	2.706	0	0	0	52	0	FAM160B1	intronic	NA
GBM_A_T6R1--R1a	10:116606174	G	T	50	0.180	41	37.341	5.237	9	31.778	11.606	38	8	FAM160B1	intronic	NA
GBM_A_T6R1--R1b	10:116606174	G	T	25	0.120	22	38.000	3.222	3	36.000	1.732	21	3	FAM160B1	intronic	NA
GBM_A_T6R1--R1c	10:116606174	G	T	32	0.031	31	37.097	4.036	1	37.000	0.000	30	1	FAM160B1	intronic	NA
GBM_A_T6R1--R1d	10:116606174	G	T	22	0.091	20	38.400	3.267	2	37.000	0.000	19	2	FAM160B1	intronic	NA
GBM_A_T6R1--GL	10:134752008	C	NA	68	0	39	36.821	3.025	0	0	0	39	0	TTC40	intronic	NA
GBM_A_T6R1--R1a	10:134752008	C	T	37	0.027	9	30.000	10.198	1	34.000	0.000	7	1	TTC40	intronic	NA
GBM_A_T6R1--R1b	10:134752008	C	T	50	0.020	13	35.154	10.270	1	31.000	0.000	12	1	TTC40	intronic	NA
GBM_A_T6R1--R1c	10:134752008	C	T	70	0.014	31	33.581	9.657	1	34.000	0.000	27	1	TTC40	intronic	NA
GBM_A_T6R1--R1d	10:134752008	C	T	55	0.091	10	34.600	3.864	5	34.000	0.000	10	5	TTC40	intronic	NA
GBM_A_T6R1--GL	10:3124526	G	NA	45	0	45	37.000	6.484	0	0	0	43	0	PFKP	intronic	NA
GBM_A_T6R1--R1a	10:3124526	G	C	49	0.224	38	33.711	10.765	11	34.273	11.046	30	10	PFKP	intronic	NA
GBM_A_T6R1--R1b	10:3124526	G	C	64	0.250	48	38.542	2.736	16	38.250	3.256	47	16	PFKP	intronic	NA
GBM_A_T6R1--R1c	10:3124526	G	C	44	0.318	30	36.600	7.537	14	33.500	10.697	28	10	PFKP	intronic	NA
GBM_A_T6R1--R1d	10:3124526	G	C	36	0.278	26	38.346	2.190	10	37.200	4.077	26	9	PFKP	intronic	NA
GBM_A_T6R1--GL	1:114445217	A	NA	68	0	68	38.838	3.179	0	0	0	67	0	AP4B1	intronic	NA
GBM_A_T6R1--R1a	1:114445217	A	G	98	0.173	81	35.778	7.785	17	38.941	2.536	73	17	AP4B1	intronic	NA
GBM_A_T6R1--R1b	1:114445217	A	NA	76	0	76	35.947	6.645	0	0	0	68	0	AP4B1	intronic	NA
GBM_A_T6R1--R1c	1:114445217	A	G	67	0.104	60	36.383	6.725	7	38.143	2.340	53	7	AP4B1	intronic	NA
GBM_A_T6R1--R1d	1:114445217	A	NA	65	0	65	37.923	2.986	0	0	0	64	0	AP4B1	intronic	NA
GBM_A_T6R1--GL	11:48285984	T	NA	99	0	63	37.381	5.228	0	0	0	62	0	OR4X1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	11:48285984	T	NA	65	0	19	35.368	5.418	0	0	0	18	0	OR4X1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	11:48285984	T	C	110	0.073	20	35.150	8.786	8	33.000	2.204	18	7	OR4X1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	11:48285984	T	C	82	0.061	17	35.412	8.980	5	33.600	2.881	16	5	OR4X1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	11:48285984	T	C	61	0.033	10	34.600	6.637	2	32.500	2.121	9	2	OR4X1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	1:15695820	T	NA	52	0	52	39.269	2.386	0	0	0	52	0	FHAD1	intronic	NA
GBM_A_T6R1--R1a	1:15695820	T	C	86	0.372	54	37.537	4.087	32	37.594	4.242	50	30	FHAD1	intronic	NA
GBM_A_T6R1--R1b	1:15695820	T	C	60	0.417	35	37.457	5.782	25	37.440	2.902	33	25	FHAD1	intronic	NA
GBM_A_T6R1--R1c	1:15695820	T	C	45	0.311	31	36.032	9.171	14	38.143	3.759	28	14	FHAD1	intronic	NA
GBM_A_T6R1--R1d	1:15695820	T	C	53	0.415	31	38.355	2.811	22	37.682	4.202	30	21	FHAD1	intronic	NA
GBM_A_T6R1--GL	11:62951251	T	NA	193	0	192	38.693	3.738	0	0	0	189	0	SLC22A25	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	11:62951251	T	C	382	0.285	271	37.207	5.367	109	37.596	5.678	253	106	SLC22A25	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	11:62951251	T	C	325	0.326	219	36.566	5.922	106	37.057	5.888	204	100	SLC22A25	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	11:62951251	T	C	315	0.298	220	37.114	5.946	94	37.521	5.176	204	91	SLC22A25	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	11:62951251	T	C	333	0.288	237	37.059	6.013	96	38.698	2.870	222	95	SLC22A25	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	1:170521320	T	NA	124	0	123	32.463	9.553	0	0	0	90	0	GORAB	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	1:170521320	T	NA	195	0	190	32.632	8.306	0	0	0	145	0	GORAB	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	1:170521320	T	C	159	0.214	125	31.272	9.334	34	33.324	8.658	92	27	GORAB	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	1:170521320	T	NA	194	0	193	31.503	9.206	0	0	0	141	0	GORAB	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	1:170521320	T	C	168	0.286	118	31.661	9.849	48	35.271	8.015	89	43	GORAB	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	11:89943710	A	NA	78	0	78	34.654	7.709	0	0	0	66	0	CHORDC1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	11:89943710	A	C	187	0.310	128	33.875	8.244	58	34.621	8.818	103	51	CHORDC1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	11:89943710	A	C	71	0.324	48	36.271	7.759	23	34.826	9.218	45	19	CHORDC1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	11:89943710	A	C	68	0.279	49	31.694	7.933	19	31.895	10.984	35	15	CHORDC1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	11:89943710	A	C	60	0.200	48	34.104	8.728	12	38.500	2.611	42	12	CHORDC1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	1:223831918	C	NA	234	0	234	39.530	2.483	0	0	0	232	0	CAPN8	intronic	NA
GBM_A_T6R1--R1a	1:223831918	C	T	308	0.393	185	38.659	4.187	121	37.917	4.835	180	117	CAPN8	intronic	NA
GBM_A_T6R1--R1b	1:223831918	C	T	246	0.346	161	37.534	6.227	85	38.659	3.304	152	81	CAPN8	intronic	NA
GBM_A_T6R1--R1c	1:223831918	C	T	196	0.408	116	37.664	6.557	80	37.788	4.463	108	72	CAPN8	intronic	NA
GBM_A_T6R1--R1d	1:223831918	C	T	207	0.420	120	38.558	4.367	87	38.759	4.727	118	84	CAPN8	intronic	NA
GBM_A_T6R1--GL	1:228434300	A	NA	133	0	124	34.129	9.726	0	0	0	106	0	OBSCN	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	1:228434300	A	NA	139	0	134	35.328	7.091	0	0	0	122	0	OBSCN	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	1:228434300	A	G	217	0.267	127	30.378	12.642	58	26.155	15.067	98	34	OBSCN	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	1:228434300	A	NA	190	0	157	29.771	13.029	0	0	0	116	0	OBSCN	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	1:228434300	A	G	238	0.248	142	30.183	13.671	59	28.034	14.113	109	39	OBSCN	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	12:32861097	A	NA	79	0	79	37.797	5.021	0	0	0	75	0	DNM1L	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	12:32861097	A	NA	98	0	97	37.052	4.629	0	0	0	91	0	DNM1L	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	12:32861097	A	G	63	0.222	49	35.490	7.226	14	37.214	5.605	44	12	DNM1L	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	12:32861097	A	NA	38	0	38	35.421	6.911	0	0	0	33	0	DNM1L	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	12:32861097	A	G	49	0.184	40	37.625	6.838	9	38.556	3.167	38	9	DNM1L	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	1:232941658	T	NA	40	0	39	32.385	6.777	0	0	0	32	0	MAP10	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	1:232941658	T	G	51	0.353	33	30.091	10.202	18	31.056	9.710	24	12	MAP10	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	1:232941658	T	G	44	0.295	31	32.935	9.747	13	33.769	6.698	26	11	MAP10	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	1:232941658	T	G	50	0.380	29	32.000	8.799	19	29.158	10.308	23	14	MAP10	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	1:232941658	T	G	25	0.480	13	30.692	10.957	12	35.583	3.919	10	11	MAP10	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	13:113889388	T	NA	112	0	112	38.795	3.417	0	0	0	110	0	CUL4A	exonic	synonymous_SNV
GBM_A_T6R1--R1a	13:113889388	T	C	158	0.165	132	37.705	5.815	26	36.192	7.741	124	23	CUL4A	exonic	synonymous_SNV
GBM_A_T6R1--R1b	13:113889388	T	NA	95	0	94	36.862	6.172	0	0	0	88	0	CUL4A	exonic	synonymous_SNV
GBM_A_T6R1--R1c	13:113889388	T	C	74	0.081	68	37.559	4.958	6	34.333	12.707	63	5	CUL4A	exonic	synonymous_SNV
GBM_A_T6R1--R1d	13:113889388	T	NA	55	0	55	38.182	6.165	0	0	0	52	0	CUL4A	exonic	synonymous_SNV
GBM_A_T6R1--GL	14:107066336	C	NA	35	0	35	35.714	7.544	0	0	0	30	0	LINC00221(dist=114807),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1a	14:107066336	C	NA	32	0	30	36.567	3.014	0	0	0	30	0	LINC00221(dist=114807),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1b	14:107066336	C	A	26	0.154	22	34.545	10.844	4	29.750	13.985	19	3	LINC00221(dist=114807),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1c	14:107066336	C	NA	39	0	39	32.462	9.695	0	0	0	30	0	LINC00221(dist=114807),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1d	14:107066336	C	A	43	0.279	31	36.677	6.193	12	32.500	6.446	29	9	LINC00221(dist=114807),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--GL	14:94395516	C	NA	49	0	49	33.041	8.483	0	0	0	40	0	FAM181A	UTR3	NA
GBM_A_T6R1--R1a	14:94395516	C	NA	58	0	58	30.155	12.191	0	0	0	40	0	FAM181A	UTR3	NA
GBM_A_T6R1--R1b	14:94395516	C	T	61	0.148	52	34.558	5.589	9	36.222	2.682	45	9	FAM181A	UTR3	NA
GBM_A_T6R1--R1c	14:94395516	C	NA	57	0	57	34.228	8.137	0	0	0	50	0	FAM181A	UTR3	NA
GBM_A_T6R1--R1d	14:94395516	C	T	51	0.255	37	32.270	11.315	13	33.923	7.610	32	11	FAM181A	UTR3	NA
GBM_A_T6R1--GL	15:48796184	G	NA	53	0	53	33.547	5.109	0	0	0	48	0	FBN1	intronic	NA
GBM_A_T6R1--R1a	15:48796184	G	A	80	0.463	42	33.738	3.053	37	33.000	3.644	40	32	FBN1	intronic	NA
GBM_A_T6R1--R1b	15:48796184	G	A	76	0.500	38	32.737	7.176	38	32.237	7.893	35	32	FBN1	intronic	NA
GBM_A_T6R1--R1c	15:48796184	G	A	66	0.348	42	32.714	6.302	23	34.870	2.943	37	22	FBN1	intronic	NA
GBM_A_T6R1--R1d	15:48796184	G	A	65	0.431	37	34.378	4.710	28	34.214	2.331	35	26	FBN1	intronic	NA
GBM_A_T6R1--GL	15:63047743	G	NA	61	0	61	35.557	9.398	0	0	0	55	0	TLN2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	15:63047743	G	NA	79	0	77	32.662	11.396	0	0	0	61	0	TLN2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	15:63047743	G	A	110	0.282	77	33.714	8.410	31	35.161	7.802	60	28	TLN2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	15:63047743	G	NA	67	0	67	34.269	10.036	0	0	0	58	0	TLN2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	15:63047743	G	A	78	0.192	63	34.175	9.845	15	36.467	5.097	54	13	TLN2	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	16:13010641	C	NA	175	0	175	38.823	3.710	0	0	0	170	0	SHISA9	exonic	synonymous_SNV
GBM_A_T6R1--R1a	16:13010641	C	T	233	0.232	178	36.764	6.046	54	36.463	4.197	169	50	SHISA9	exonic	synonymous_SNV
GBM_A_T6R1--R1b	16:13010641	C	T	179	0.229	138	37.174	5.789	41	32.488	11.190	130	31	SHISA9	exonic	synonymous_SNV
GBM_A_T6R1--R1c	16:13010641	C	T	154	0.182	125	35.888	6.830	28	36.607	7.724	113	26	SHISA9	exonic	synonymous_SNV
GBM_A_T6R1--R1d	16:13010641	C	T	150	0.227	115	37.365	5.358	34	37.235	3.924	108	32	SHISA9	exonic	synonymous_SNV
GBM_A_T6R1--GL	16:15850424	T	NA	46	0	46	34.261	8.242	0	0	0	40	0	MYH11	intronic	NA
GBM_A_T6R1--R1a	16:15850424	T	C	66	0.182	53	34.755	5.791	12	33.250	6.690	49	10	MYH11	intronic	NA
GBM_A_T6R1--R1b	16:15850424	T	NA	59	0	59	32.458	9.522	0	0	0	46	0	MYH11	intronic	NA
GBM_A_T6R1--R1c	16:15850424	T	C	68	0.103	61	32.705	9.157	7	33.857	7.581	51	6	MYH11	intronic	NA
GBM_A_T6R1--R1d	16:15850424	T	NA	56	0	55	35.073	6.930	0	0	0	47	0	MYH11	intronic	NA
GBM_A_T6R1--GL	16:32888879	C	NA	42	0	42	35.667	9.429	0	0	0	38	0	SLC6A10P	ncRNA_exonic	NA
GBM_A_T6R1--R1a	16:32888879	C	G	55	0.018	54	34.019	7.923	1	38.000	0.000	46	1	SLC6A10P	ncRNA_exonic	NA
GBM_A_T6R1--R1b	16:32888879	C	G	38	0.079	35	34.400	7.663	3	37.667	2.082	31	3	SLC6A10P	ncRNA_exonic	NA
GBM_A_T6R1--R1c	16:32888879	C	G	42	0.262	31	34.742	7.677	11	36.818	3.027	27	11	SLC6A10P	ncRNA_exonic	NA
GBM_A_T6R1--R1d	16:32888879	C	G	49	0.143	42	34.667	7.624	7	39.000	1.633	37	7	SLC6A10P	ncRNA_exonic	NA
GBM_A_T6R1--GL	16:89862354	A	NA	121	0	120	35.792	6.699	0	0	0	112	0	FANCA	exonic	synonymous_SNV
GBM_A_T6R1--R1a	16:89862354	A	NA	128	0	127	35.433	6.182	0	0	0	115	0	FANCA	exonic	synonymous_SNV
GBM_A_T6R1--R1b	16:89862354	A	G	105	0.238	79	33.671	8.577	25	36.120	4.246	67	24	FANCA	exonic	synonymous_SNV
GBM_A_T6R1--R1c	16:89862354	A	NA	106	0	106	34.387	6.589	0	0	0	93	0	FANCA	exonic	synonymous_SNV
GBM_A_T6R1--R1d	16:89862354	A	G	110	0.282	78	35.551	5.313	31	36.226	5.789	72	30	FANCA	exonic	synonymous_SNV
GBM_A_T6R1--GL	16:8988386	C	NA	37	0	36	35.694	9.471	0	0	0	32	0	USP7	intronic	NA
GBM_A_T6R1--R1a	16:8988386	C	G	69	0.072	64	35.188	9.540	5	20.600	17.038	56	3	USP7	intronic	NA
GBM_A_T6R1--R1b	16:8988386	C	G	21	0.238	16	35.062	10.036	5	34.600	2.191	14	5	USP7	intronic	NA
GBM_A_T6R1--R1c	16:8988386	C	G	19	0.053	18	29.611	11.833	1	31.000	0.000	12	1	USP7	intronic	NA
GBM_A_T6R1--R1d	16:8988386	C	G	24	0.042	23	32.217	11.078	1	35.000	0.000	18	1	USP7	intronic	NA
GBM_A_T6R1--GL	17:3417145	A	NA	81	0	36	37.722	4.287	0	0	0	34	0	TRPV3	UTR3	NA
GBM_A_T6R1--R1a	17:3417145	A	G	135	0.044	14	36.071	6.306	6	29.500	8.735	12	5	TRPV3	UTR3	NA
GBM_A_T6R1--R1b	17:3417145	A	G	80	0.013	12	35.083	3.579	1	34.000	0.000	11	1	TRPV3	UTR3	NA
GBM_A_T6R1--R1c	17:3417145	A	NA	72	0	15	36.600	2.923	0	0	0	15	0	TRPV3	UTR3	NA
GBM_A_T6R1--R1d	17:3417145	A	NA	69	0	8	32.000	9.971	0	0	0	6	0	TRPV3	UTR3	NA
GBM_A_T6R1--GL	17:59876511	T	NA	163	0	162	38.802	3.928	0	0	0	159	0	BRIP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	17:59876511	T	NA	239	0	238	38.118	4.707	0	0	0	225	0	BRIP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	17:59876511	T	C	125	0.160	105	38.257	3.428	20	39.700	1.922	102	20	BRIP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	17:59876511	T	NA	101	0	101	37.911	6.023	0	0	0	98	0	BRIP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	17:59876511	T	C	103	0.204	82	38.707	2.594	21	38.714	3.133	82	20	BRIP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	17:7578550	G	NA	44	0	44	37.318	8.421	0	0	0	41	0	TP53	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	17:7578550	G	A	63	0.810	12	35.917	6.694	51	36.157	6.531	11	46	TP53	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	17:7578550	G	A	52	0.942	3	38.333	2.517	49	36.816	5.611	3	44	TP53	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	17:7578550	G	A	50	0.820	9	33.667	10.025	41	37.683	4.569	8	38	TP53	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	17:7578550	G	A	54	0.907	5	38.000	3.082	49	36.000	7.802	5	41	TP53	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	19:41096697	G	NA	101	0	101	33.822	8.756	0	0	0	84	0	SHKBP1	exonic	synonymous_SNV
GBM_A_T6R1--R1a	19:41096697	G	A	134	0.448	73	30.123	12.770	60	33.767	8.189	57	49	SHKBP1	exonic	synonymous_SNV
GBM_A_T6R1--R1b	19:41096697	G	A	125	0.440	70	33.443	8.071	55	32.455	8.124	63	45	SHKBP1	exonic	synonymous_SNV
GBM_A_T6R1--R1c	19:41096697	G	A	116	0.422	67	33.672	7.658	49	32.449	9.323	58	42	SHKBP1	exonic	synonymous_SNV
GBM_A_T6R1--R1d	19:41096697	G	A	128	0.492	65	36.354	3.818	63	33.349	8.421	64	54	SHKBP1	exonic	synonymous_SNV
GBM_A_T6R1--GL	19:52863530	G	NA	60	0	59	35.373	6.424	0	0	0	54	0	ZNF610	intronic	NA
GBM_A_T6R1--R1a	19:52863530	G	T	96	0.260	69	31.580	10.438	25	32.920	7.053	54	19	ZNF610	intronic	NA
GBM_A_T6R1--R1b	19:52863530	G	T	57	0.105	49	35.510	6.494	6	35.000	5.099	44	5	ZNF610	intronic	NA
GBM_A_T6R1--R1c	19:52863530	G	T	37	0.135	32	35.688	7.096	5	23.000	19.378	29	3	ZNF610	intronic	NA
GBM_A_T6R1--R1d	19:52863530	G	T	48	0.188	39	36.026	7.224	9	35.333	4.031	36	8	ZNF610	intronic	NA
GBM_A_T6R1--GL	19:58152143	T	NA	137	0	137	36.964	5.811	0	0	0	126	0	ZNF211	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	19:58152143	T	C	207	0.159	174	36.534	5.358	33	35.576	6.315	160	27	ZNF211	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	19:58152143	T	NA	154	0	152	36.375	6.444	0	0	0	138	0	ZNF211	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	19:58152143	T	C	155	0.155	131	35.779	6.999	24	36.875	6.911	116	23	ZNF211	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	19:58152143	T	NA	141	0	140	36.564	5.229	0	0	0	130	0	ZNF211	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	19:58464619	C	NA	62	0	62	38.290	3.143	0	0	0	62	0	ZNF256(dist=5542),C19orf18(dist=5186)	intergenic	NA
GBM_A_T6R1--R1a	19:58464619	C	NA	83	0	83	36.060	7.912	0	0	0	75	0	ZNF256(dist=5542),C19orf18(dist=5186)	intergenic	NA
GBM_A_T6R1--R1b	19:58464619	C	T	64	0.156	54	33.704	9.368	10	33.800	9.473	44	8	ZNF256(dist=5542),C19orf18(dist=5186)	intergenic	NA
GBM_A_T6R1--R1c	19:58464619	C	NA	65	0	65	35.800	6.029	0	0	0	58	0	ZNF256(dist=5542),C19orf18(dist=5186)	intergenic	NA
GBM_A_T6R1--R1d	19:58464619	C	T	74	0.203	59	36.000	8.168	15	38.333	3.086	54	15	ZNF256(dist=5542),C19orf18(dist=5186)	intergenic	NA
GBM_A_T6R1--GL	19:735943	C	NA	109	0	109	34.716	9.590	0	0	0	94	0	PALM	intronic	NA
GBM_A_T6R1--R1a	19:735943	C	T	130	0.408	72	33.861	6.822	53	24.925	7.588	60	17	PALM	intronic	NA
GBM_A_T6R1--R1b	19:735943	C	T	157	0.420	88	35.307	8.624	66	22.500	9.549	79	23	PALM	intronic	NA
GBM_A_T6R1--R1c	19:735943	C	T	142	0.331	89	34.101	8.011	47	22.404	10.556	75	17	PALM	intronic	NA
GBM_A_T6R1--R1d	19:735943	C	T	160	0.431	90	36.533	6.676	69	26.130	8.342	83	32	PALM	intronic	NA
GBM_A_T6R1--GL	20:61513252	G	NA	192	0	192	34.896	6.891	0	0	0	176	0	DIDO1	exonic	synonymous_SNV
GBM_A_T6R1--R1a	20:61513252	G	A	233	0.433	132	31.159	10.289	101	33.129	7.866	104	84	DIDO1	exonic	synonymous_SNV
GBM_A_T6R1--R1b	20:61513252	G	A	233	0.429	131	32.336	9.531	100	32.850	8.569	108	85	DIDO1	exonic	synonymous_SNV
GBM_A_T6R1--R1c	20:61513252	G	A	238	0.349	155	33.084	6.791	83	32.157	7.687	130	63	DIDO1	exonic	synonymous_SNV
GBM_A_T6R1--R1d	20:61513252	G	A	204	0.485	105	33.933	7.698	99	35.232	6.139	93	90	DIDO1	exonic	synonymous_SNV
GBM_A_T6R1--GL	2:179641275	A	NA	207	0	207	37.068	5.238	0	0	0	196	0	TTN	exonic	synonymous_SNV
GBM_A_T6R1--R1a	2:179641275	A	NA	194	0	194	35.825	5.306	0	0	0	181	0	TTN	exonic	synonymous_SNV
GBM_A_T6R1--R1b	2:179641275	A	G	180	0.239	137	35.650	6.267	43	36.209	7.639	122	38	TTN	exonic	synonymous_SNV
GBM_A_T6R1--R1c	2:179641275	A	NA	185	0	183	35.055	6.938	0	0	0	161	0	TTN	exonic	synonymous_SNV
GBM_A_T6R1--R1d	2:179641275	A	G	165	0.273	120	36.708	5.801	45	38.222	4.045	111	42	TTN	exonic	synonymous_SNV
GBM_A_T6R1--GL	2:207621736	G	NA	159	0	158	39.139	3.616	0	0	0	154	0	MDH1B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	2:207621736	G	A	242	0.120	210	37.952	4.767	29	38.793	2.527	201	29	MDH1B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	2:207621736	G	A	127	0.094	115	37.130	5.686	12	35.333	7.152	102	10	MDH1B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	2:207621736	G	A	105	0.133	91	37.088	5.559	14	38.286	2.268	83	14	MDH1B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	2:207621736	G	A	99	0.121	87	39.138	3.005	12	39.417	2.503	85	12	MDH1B	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	22:30198032	C	NA	42	0	42	34.286	7.633	0	0	0	37	0	ASCC2	exonic	stopgain_SNV
GBM_A_T6R1--R1a	22:30198032	C	NA	51	0	51	31.961	10.833	0	0	0	42	0	ASCC2	exonic	stopgain_SNV
GBM_A_T6R1--R1b	22:30198032	C	A	54	0.130	47	32.043	11.294	7	36.286	3.592	39	7	ASCC2	exonic	stopgain_SNV
GBM_A_T6R1--R1c	22:30198032	C	NA	47	0	47	33.894	8.092	0	0	0	42	0	ASCC2	exonic	stopgain_SNV
GBM_A_T6R1--R1d	22:30198032	C	A	48	0.312	33	33.242	9.624	15	34.000	3.817	29	13	ASCC2	exonic	stopgain_SNV
GBM_A_T6R1--GL	2:54365715	T	NA	57	0	57	36.789	3.797	0	0	0	54	0	ACYP2	intronic	NA
GBM_A_T6R1--R1a	2:54365715	T	C	55	0.218	43	33.302	8.178	12	38.167	3.407	37	11	ACYP2	intronic	NA
GBM_A_T6R1--R1b	2:54365715	T	NA	39	0	39	33.641	8.318	0	0	0	31	0	ACYP2	intronic	NA
GBM_A_T6R1--R1c	2:54365715	T	C	45	0.111	40	34.625	5.128	5	37.800	4.494	34	5	ACYP2	intronic	NA
GBM_A_T6R1--R1d	2:54365715	T	NA	28	0	28	34.643	7.685	0	0	0	25	0	ACYP2	intronic	NA
GBM_A_T6R1--GL	3:108095497	A	NA	76	0	76	38.882	2.508	0	0	0	76	0	HHLA2	intronic	NA
GBM_A_T6R1--R1a	3:108095497	A	NA	70	0	70	37.743	4.113	0	0	0	68	0	HHLA2	intronic	NA
GBM_A_T6R1--R1b	3:108095497	A	T	62	0.258	46	35.957	8.927	16	38.188	3.103	41	15	HHLA2	intronic	NA
GBM_A_T6R1--R1c	3:108095497	A	NA	44	0	44	36.614	6.296	0	0	0	40	0	HHLA2	intronic	NA
GBM_A_T6R1--R1d	3:108095497	A	T	49	0.367	31	37.774	4.425	18	38.833	3.485	30	17	HHLA2	intronic	NA
GBM_A_T6R1--GL	3:119128308	T	NA	49	0	48	35.750	4.290	0	0	0	43	0	ARHGAP31	intronic	NA
GBM_A_T6R1--R1a	3:119128308	T	C	59	0.237	45	34.444	6.986	14	34.571	5.515	38	11	ARHGAP31	intronic	NA
GBM_A_T6R1--R1b	3:119128308	T	NA	35	0	35	35.600	4.766	0	0	0	30	0	ARHGAP31	intronic	NA
GBM_A_T6R1--R1c	3:119128308	T	C	35	0.171	29	33.379	9.814	6	32.667	15.069	24	5	ARHGAP31	intronic	NA
GBM_A_T6R1--R1d	3:119128308	T	NA	37	0	37	34.757	8.808	0	0	0	33	0	ARHGAP31	intronic	NA
GBM_A_T6R1--GL	3:125195665	C	NA	74	0	74	39.297	2.386	0	0	0	74	0	SNX4	intronic	NA
GBM_A_T6R1--R1a	3:125195665	C	T	85	0.294	60	38.450	3.766	25	37.760	2.847	59	25	SNX4	intronic	NA
GBM_A_T6R1--R1b	3:125195665	C	T	22	0.364	14	35.857	4.818	8	36.375	2.973	12	8	SNX4	intronic	NA
GBM_A_T6R1--R1c	3:125195665	C	T	21	0.286	15	34.800	7.053	6	36.333	2.066	13	6	SNX4	intronic	NA
GBM_A_T6R1--R1d	3:125195665	C	T	27	0.148	23	38.261	3.899	4	35.250	4.924	22	3	SNX4	intronic	NA
GBM_A_T6R1--GL	3:12779654	T	NA	49	0	48	32.375	8.840	0	0	0	37	0	TMEM40	exonic	synonymous_SNV
GBM_A_T6R1--R1a	3:12779654	T	NA	40	0	38	32.605	10.207	0	0	0	30	0	TMEM40	exonic	synonymous_SNV
GBM_A_T6R1--R1b	3:12779654	T	C	24	0.333	16	34.625	9.047	8	31.375	12.694	13	6	TMEM40	exonic	synonymous_SNV
GBM_A_T6R1--R1c	3:12779654	T	NA	25	0	25	33.960	9.181	0	0	0	20	0	TMEM40	exonic	synonymous_SNV
GBM_A_T6R1--R1d	3:12779654	T	C	21	0.333	14	36.500	3.032	7	36.143	4.845	14	6	TMEM40	exonic	synonymous_SNV
GBM_A_T6R1--GL	3:14559443	C	NA	35	0	35	36.686	4.794	0	0	0	32	0	GRIP2	intronic	NA
GBM_A_T6R1--R1a	3:14559443	C	NA	15	0	15	29.600	13.809	0	0	0	10	0	GRIP2	intronic	NA
GBM_A_T6R1--R1b	3:14559443	C	T	16	0.500	8	34.750	9.407	8	28.500	14.000	7	5	GRIP2	intronic	NA
GBM_A_T6R1--R1c	3:14559443	C	NA	18	0	18	35.056	3.888	0	0	0	17	0	GRIP2	intronic	NA
GBM_A_T6R1--R1d	3:14559443	C	T	17	0.412	10	34.100	10.279	7	34.000	6.191	8	5	GRIP2	intronic	NA
GBM_A_T6R1--GL	3:178952085	A	NA	156	0	156	38.622	3.549	0	0	0	153	0	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	3:178952085	A	G	167	0.186	135	37.541	5.563	31	36.387	6.323	124	25	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	3:178952085	A	G	121	0.355	78	36.385	7.736	43	37.628	6.726	72	40	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	3:178952085	A	G	107	0.168	88	37.352	4.495	18	35.167	12.186	81	16	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	3:178952085	A	G	101	0.277	73	38.658	3.132	28	38.821	3.378	73	27	PIK3CA	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	4:15937919	A	NA	192	0	192	38.438	3.888	0	0	0	185	0	FGFBP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	4:15937919	A	NA	226	0	225	37.138	5.671	0	0	0	210	0	FGFBP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	4:15937919	A	G	177	0.051	168	37.393	4.931	9	39.111	2.088	159	9	FGFBP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	4:15937919	A	NA	221	0	220	37.173	6.922	0	0	0	202	0	FGFBP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	4:15937919	A	G	203	0.192	164	38.146	5.683	39	37.667	5.764	157	36	FGFBP1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	4:187518024	C	NA	284	0	284	38.577	3.165	0	0	0	277	0	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	4:187518024	C	T	308	0.224	239	37.343	6.239	69	35.870	7.440	225	64	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	4:187518024	C	T	369	0.201	295	36.851	5.433	74	34.986	7.208	277	64	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	4:187518024	C	T	384	0.229	294	35.908	6.505	88	34.795	6.486	263	77	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	4:187518024	C	T	345	0.217	270	37.374	4.458	75	35.853	5.902	260	67	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	4:187531037	T	NA	247	0	246	37.915	4.296	0	0	0	239	0	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	4:187531037	T	NA	292	0	292	37.229	4.858	0	0	0	280	0	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	4:187531037	T	C	304	0.197	244	36.766	5.330	60	35.650	7.208	229	57	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	4:187531037	T	NA	296	0	294	35.221	7.596	0	0	0	260	0	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	4:187531037	T	C	325	0.231	250	37.428	4.806	75	37.000	7.160	240	70	FAT1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	4:69095151	A	NA	173	0	173	38.341	4.047	0	0	0	168	0	TMPRSS11B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	4:69095151	A	NA	240	0	240	37.688	4.994	0	0	0	230	0	TMPRSS11B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	4:69095151	A	C	157	0.217	123	37.911	4.809	34	38.765	3.016	116	34	TMPRSS11B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	4:69095151	A	NA	134	0	134	37.045	6.640	0	0	0	122	0	TMPRSS11B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	4:69095151	A	C	141	0.234	108	38.380	4.193	33	39.091	2.810	106	33	TMPRSS11B	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	4:70267900	A	NA	62	0	62	32.339	5.453	0	0	0	49	0	UGT2B28(dist=107132),UGT2B4(dist=77983)	intergenic	NA
GBM_A_T6R1--R1a	4:70267900	A	NA	87	0	86	31.570	7.171	0	0	0	65	0	UGT2B28(dist=107132),UGT2B4(dist=77983)	intergenic	NA
GBM_A_T6R1--R1b	4:70267900	A	G	64	0.172	52	29.442	8.633	11	34.455	11.049	36	10	UGT2B28(dist=107132),UGT2B4(dist=77983)	intergenic	NA
GBM_A_T6R1--R1c	4:70267900	A	NA	68	0	68	29.250	9.713	0	0	0	50	0	UGT2B28(dist=107132),UGT2B4(dist=77983)	intergenic	NA
GBM_A_T6R1--R1d	4:70267900	A	G	63	0.206	50	32.480	6.952	13	34.462	9.863	40	12	UGT2B28(dist=107132),UGT2B4(dist=77983)	intergenic	NA
GBM_A_T6R1--GL	4:7691261	G	NA	77	0	77	35.169	6.461	0	0	0	72	0	SORCS2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	4:7691261	G	NA	91	0	91	33.176	8.533	0	0	0	78	0	SORCS2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	4:7691261	G	A	110	0.291	77	35.013	7.092	32	35.469	5.003	68	28	SORCS2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	4:7691261	G	NA	100	0	100	33.890	8.653	0	0	0	87	0	SORCS2	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	4:7691261	G	A	89	0.270	65	35.785	5.907	24	34.708	8.981	61	21	SORCS2	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	5:1052258	G	NA	35	0	35	35.400	7.163	0	0	0	31	0	SLC12A7	UTR3	NA
GBM_A_T6R1--R1a	5:1052258	G	NA	47	0	47	32.532	8.809	0	0	0	37	0	SLC12A7	UTR3	NA
GBM_A_T6R1--R1b	5:1052258	G	A	43	0.233	33	33.909	8.582	10	36.700	2.869	29	10	SLC12A7	UTR3	NA
GBM_A_T6R1--R1c	5:1052258	G	NA	46	0	46	34.587	8.424	0	0	0	40	0	SLC12A7	UTR3	NA
GBM_A_T6R1--R1d	5:1052258	G	A	51	0.216	40	34.950	6.263	11	36.636	4.342	33	10	SLC12A7	UTR3	NA
GBM_A_T6R1--GL	5:32379609	G	NA	48	0	48	36.917	8.131	0	0	0	44	0	ZFR	intronic	NA
GBM_A_T6R1--R1a	5:32379609	G	NA	66	0	62	35.210	7.816	0	0	0	53	0	ZFR	intronic	NA
GBM_A_T6R1--R1b	5:32379609	G	A	24	0.125	21	34.571	8.617	3	34.667	0.577	18	3	ZFR	intronic	NA
GBM_A_T6R1--R1c	5:32379609	G	A	33	0.152	28	34.143	8.488	5	33.200	1.924	22	5	ZFR	intronic	NA
GBM_A_T6R1--R1d	5:32379609	G	A	23	0.087	21	34.714	11.172	2	32.500	2.121	19	2	ZFR	intronic	NA
GBM_A_T6R1--GL	5:35965819	C	NA	149	0	149	37.477	6.770	0	0	0	142	0	UGT3A1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	5:35965819	C	NA	194	0	194	36.814	5.257	0	0	0	182	0	UGT3A1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	5:35965819	C	A	158	0.228	122	35.656	7.086	36	34.194	8.915	109	30	UGT3A1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	5:35965819	C	NA	179	0	177	36.051	7.090	0	0	0	161	0	UGT3A1	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	5:35965819	C	A	149	0.228	115	37.304	5.498	34	36.765	3.153	109	34	UGT3A1	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	5:85583582	A	NA	269	0	268	38.493	4.234	0	0	0	260	0	NBPF22P	ncRNA_exonic	NA
GBM_A_T6R1--R1a	5:85583582	A	NA	299	0	296	37.253	5.599	0	0	0	279	0	NBPF22P	ncRNA_exonic	NA
GBM_A_T6R1--R1b	5:85583582	A	G	317	0.183	259	36.888	5.804	58	36.448	6.710	244	52	NBPF22P	ncRNA_exonic	NA
GBM_A_T6R1--R1c	5:85583582	A	NA	260	0	260	36.235	6.749	0	0	0	234	0	NBPF22P	ncRNA_exonic	NA
GBM_A_T6R1--R1d	5:85583582	A	G	314	0.217	246	37.760	5.061	68	37.632	5.154	232	62	NBPF22P	ncRNA_exonic	NA
GBM_A_T6R1--GL	6:143382254	C	NA	56	0	54	31.389	9.087	0	0	0	39	0	AIG1	intronic	NA
GBM_A_T6R1--R1a	6:143382254	C	T	45	0.156	37	31.568	11.529	7	24.571	11.267	29	3	AIG1	intronic	NA
GBM_A_T6R1--R1b	6:143382254	C	NA	27	0	25	29.480	10.635	0	0	0	17	0	AIG1	intronic	NA
GBM_A_T6R1--R1c	6:143382254	C	T	49	0.082	43	32.326	7.127	4	25.250	15.586	29	3	AIG1	intronic	NA
GBM_A_T6R1--R1d	6:143382254	C	T	43	0.186	33	27.364	12.188	8	31.750	5.418	19	6	AIG1	intronic	NA
GBM_A_T6R1--GL	6:151151933	C	NA	163	0	163	37.184	4.294	0	0	0	153	0	PLEKHG1	exonic	synonymous_SNV
GBM_A_T6R1--R1a	6:151151933	C	NA	159	0	159	36.314	5.542	0	0	0	147	0	PLEKHG1	exonic	synonymous_SNV
GBM_A_T6R1--R1b	6:151151933	C	T	208	0.005	207	35.599	7.470	1	37.000	0.000	188	1	PLEKHG1	exonic	synonymous_SNV
GBM_A_T6R1--R1c	6:151151933	C	NA	175	0	173	34.584	8.962	0	0	0	149	0	PLEKHG1	exonic	synonymous_SNV
GBM_A_T6R1--R1d	6:151151933	C	T	174	0.236	133	36.632	6.269	41	36.561	4.843	125	39	PLEKHG1	exonic	synonymous_SNV
GBM_A_T6R1--GL	6:29693891	C	NA	127	0	127	32.992	8.150	0	0	0	104	0	HLA-F	intronic	NA
GBM_A_T6R1--R1a	6:29693891	C	A	169	0.396	102	29.255	11.584	67	31.672	11.140	65	49	HLA-F	intronic	NA
GBM_A_T6R1--R1b	6:29693891	C	A	173	0.445	96	32.510	7.835	77	31.091	10.306	72	53	HLA-F	intronic	NA
GBM_A_T6R1--R1c	6:29693891	C	A	160	0.356	103	30.835	8.652	57	31.509	9.218	74	43	HLA-F	intronic	NA
GBM_A_T6R1--R1d	6:29693891	C	A	157	0.490	80	31.975	8.623	77	33.987	7.784	59	66	HLA-F	intronic	NA
GBM_A_T6R1--GL	6:31378747	A	NA	58	0	58	35.534	7.593	0	0	0	53	0	MICA	intronic	NA
GBM_A_T6R1--R1a	6:31378747	A	NA	64	0	62	35.016	7.558	0	0	0	58	0	MICA	intronic	NA
GBM_A_T6R1--R1b	6:31378747	A	G	88	0.136	76	35.263	7.439	12	33.250	10.881	68	10	MICA	intronic	NA
GBM_A_T6R1--R1c	6:31378747	A	NA	83	0	83	33.795	8.152	0	0	0	72	0	MICA	intronic	NA
GBM_A_T6R1--R1d	6:31378747	A	G	93	0.280	67	34.478	7.012	26	36.577	3.911	59	25	MICA	intronic	NA
GBM_A_T6R1--GL	6:31503371	C	NA	35	0	35	38.829	2.584	0	0	0	35	0	ATP6V1G2-DDX39B	ncRNA_intronic	NA
GBM_A_T6R1--R1a	6:31503371	C	NA	36	0	36	37.167	4.837	0	0	0	34	0	ATP6V1G2-DDX39B	ncRNA_intronic	NA
GBM_A_T6R1--R1b	6:31503371	C	T	49	0.265	36	35.083	8.230	13	37.769	5.918	32	12	ATP6V1G2-DDX39B	ncRNA_intronic	NA
GBM_A_T6R1--R1c	6:31503371	C	NA	61	0	61	37.361	4.957	0	0	0	57	0	ATP6V1G2-DDX39B	ncRNA_intronic	NA
GBM_A_T6R1--R1d	6:31503371	C	T	44	0.227	34	38.088	3.864	10	36.500	4.428	33	9	ATP6V1G2-DDX39B	ncRNA_intronic	NA
GBM_A_T6R1--GL	6:4133876	C	NA	201	0	201	38.532	4.174	0	0	0	195	0	ECI2	exonic	synonymous_SNV
GBM_A_T6R1--R1a	6:4133876	C	NA	268	0	267	38.483	4.104	0	0	0	258	0	ECI2	exonic	synonymous_SNV
GBM_A_T6R1--R1b	6:4133876	C	T	221	0.167	183	37.803	4.032	37	38.270	5.470	174	36	ECI2	exonic	synonymous_SNV
GBM_A_T6R1--R1c	6:4133876	C	NA	198	0	198	37.096	5.727	0	0	0	185	0	ECI2	exonic	synonymous_SNV
GBM_A_T6R1--R1d	6:4133876	C	T	163	0.184	133	38.677	3.390	30	38.400	7.142	129	29	ECI2	exonic	synonymous_SNV
GBM_A_T6R1--GL	6:44122598	T	NA	67	0	66	35.576	6.005	0	0	0	59	0	TMEM63B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	6:44122598	T	C	92	0.359	59	34.814	7.457	33	36.182	5.725	53	29	TMEM63B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	6:44122598	T	C	73	0.452	40	33.650	10.939	33	34.909	8.567	35	30	TMEM63B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	6:44122598	T	C	62	0.387	38	31.921	11.080	24	34.208	7.289	29	20	TMEM63B	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	6:44122598	T	C	70	0.486	36	34.556	8.990	34	33.500	8.767	31	28	TMEM63B	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	7:104308757	A	NA	135	0	134	38.784	2.877	0	0	0	131	0	LHFPL3	intronic	NA
GBM_A_T6R1--R1a	7:104308757	A	G	190	0.168	158	36.354	7.231	32	36.500	4.551	143	30	LHFPL3	intronic	NA
GBM_A_T6R1--R1b	7:104308757	A	NA	198	0	194	36.345	6.716	0	0	0	181	0	LHFPL3	intronic	NA
GBM_A_T6R1--R1c	7:104308757	A	G	166	0.102	149	36.570	6.685	17	34.059	7.267	134	14	LHFPL3	intronic	NA
GBM_A_T6R1--R1d	7:104308757	A	NA	181	0	181	37.597	5.883	0	0	0	171	0	LHFPL3	intronic	NA
GBM_A_T6R1--GL	7:105662691	G	NA	340	0	340	39.041	3.797	0	0	0	335	0	CDHR3	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1a	7:105662691	G	A	385	0.169	319	37.690	5.174	65	37.938	4.042	307	62	CDHR3	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1b	7:105662691	G	A	531	0.241	403	37.449	4.919	128	36.789	5.769	387	118	CDHR3	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1c	7:105662691	G	A	581	0.170	481	36.676	6.080	99	35.848	5.941	448	88	CDHR3	exonic	nonsynonymous_SNV
GBM_A_T6R1--R1d	7:105662691	G	A	541	0.213	426	37.897	4.490	115	38.617	2.928	408	114	CDHR3	exonic	nonsynonymous_SNV
GBM_A_T6R1--GL	7:123517035	A	NA	194	0	194	38.108	4.359	0	0	0	185	0	HYAL4	exonic	synonymous_SNV
GBM_A_T6R1--R1a	7:123517035	A	T	279	0.179	226	36.832	6.084	50	37.940	4.905	210	49	HYAL4	exonic	synonymous_SNV
GBM_A_T6R1--R1b	7:123517035	A	NA	194	0	193	36.943	5.597	0	0	0	180	0	HYAL4	exonic	synonymous_SNV
GBM_A_T6R1--R1c	7:123517035	A	T	220	0.141	189	35.333	7.881	31	35.903	5.381	166	26	HYAL4	exonic	synonymous_SNV
GBM_A_T6R1--R1d	7:123517035	A	NA	197	0	197	37.142	6.150	0	0	0	184	0	HYAL4	exonic	synonymous_SNV
GBM_A_T6R1--GL	7:127229116	C	NA	88	0	88	35.284	7.750	0	0	0	81	0	ARF5	intronic	NA
GBM_A_T6R1--R1a	7:127229116	C	NA	96	0	96	36.094	6.130	0	0	0	91	0	ARF5	intronic	NA
GBM_A_T6R1--R1b	7:127229116	C	T	102	0.235	78	35.577	6.835	24	36.875	3.916	71	23	ARF5	intronic	NA
GBM_A_T6R1--R1c	7:127229116	C	NA	83	0	83	35.482	6.619	0	0	0	75	0	ARF5	intronic	NA
GBM_A_T6R1--R1d	7:127229116	C	T	114	0.202	91	36.956	5.159	23	34.348	7.854	87	21	ARF5	intronic	NA
GBM_A_T6R1--GL	7:138373858	C	NA	188	0	188	39.128	3.344	0	0	0	186	0	SVOPL(dist=10068),ATP6V0A4(dist=17181)	intergenic	NA
GBM_A_T6R1--R1a	7:138373858	C	T	241	0.382	149	37.087	6.157	92	38.109	3.621	139	89	SVOPL(dist=10068),ATP6V0A4(dist=17181)	intergenic	NA
GBM_A_T6R1--R1b	7:138373858	C	T	231	0.338	152	38.388	3.367	78	37.910	5.548	149	75	SVOPL(dist=10068),ATP6V0A4(dist=17181)	intergenic	NA
GBM_A_T6R1--R1c	7:138373858	C	T	188	0.367	119	37.395	5.470	69	37.145	5.391	112	64	SVOPL(dist=10068),ATP6V0A4(dist=17181)	intergenic	NA
GBM_A_T6R1--R1d	7:138373858	C	T	235	0.417	137	38.328	5.116	98	37.633	5.312	129	92	SVOPL(dist=10068),ATP6V0A4(dist=17181)	intergenic	NA
GBM_A_T6R1--GL	7:158534163	T	NA	56	0	56	23.607	9.545	0	0	0	15	0	ESYT2	intronic	NA
GBM_A_T6R1--R1a	7:158534163	T	G	83	0.096	72	22.611	10.562	8	28.000	11.796	24	5	ESYT2	intronic	NA
GBM_A_T6R1--R1b	7:158534163	T	G	64	0.172	52	24.346	9.128	11	25.909	14.391	16	8	ESYT2	intronic	NA
GBM_A_T6R1--R1c	7:158534163	T	NA	44	0	42	20.571	11.190	0	0	0	11	0	ESYT2	intronic	NA
GBM_A_T6R1--R1d	7:158534163	T	G	55	0.055	50	23.560	10.168	3	23.667	14.012	19	1	ESYT2	intronic	NA
GBM_A_T6R1--GL	8:125035635	C	NA	127	0	126	38.730	2.824	0	0	0	126	0	FER1L6-AS1	ncRNA_intronic	NA
GBM_A_T6R1--R1a	8:125035635	C	A	191	0.209	149	37.423	6.257	40	37.125	3.878	140	38	FER1L6-AS1	ncRNA_intronic	NA
GBM_A_T6R1--R1b	8:125035635	C	A	171	0.234	130	37.646	4.754	40	36.050	7.961	124	36	FER1L6-AS1	ncRNA_intronic	NA
GBM_A_T6R1--R1c	8:125035635	C	A	125	0.216	98	37.010	6.299	27	36.519	7.382	93	26	FER1L6-AS1	ncRNA_intronic	NA
GBM_A_T6R1--R1d	8:125035635	C	A	174	0.264	128	37.625	6.008	46	37.761	3.962	120	44	FER1L6-AS1	ncRNA_intronic	NA
GBM_A_T6R1--GL	8:70673959	A	NA	71	0	71	39.085	2.812	0	0	0	69	0	SLCO5A1	intronic	NA
GBM_A_T6R1--R1a	8:70673959	A	G	110	0.445	61	37.000	6.726	49	37.694	4.379	57	48	SLCO5A1	intronic	NA
GBM_A_T6R1--R1b	8:70673959	A	G	94	0.511	46	37.152	3.682	48	37.188	5.350	44	45	SLCO5A1	intronic	NA
GBM_A_T6R1--R1c	8:70673959	A	G	98	0.418	57	36.895	5.098	41	36.683	6.784	51	38	SLCO5A1	intronic	NA
GBM_A_T6R1--R1d	8:70673959	A	G	76	0.513	37	36.973	5.150	39	37.795	3.854	31	37	SLCO5A1	intronic	NA
GBM_A_T6R1--GL	9:35752614	C	NA	277	0	277	39.264	4.060	0	0	0	268	0	RGP1	intronic	NA
GBM_A_T6R1--R1a	9:35752614	C	T	278	0.191	224	38.357	5.152	53	39.642	2.254	216	53	RGP1	intronic	NA
GBM_A_T6R1--R1b	9:35752614	C	T	320	0.194	258	37.512	5.711	62	37.984	6.208	240	59	RGP1	intronic	NA
GBM_A_T6R1--R1c	9:35752614	C	T	328	0.201	262	38.156	5.287	66	38.348	5.734	249	64	RGP1	intronic	NA
GBM_A_T6R1--R1d	9:35752614	C	T	348	0.181	285	38.432	4.751	63	39.111	4.498	275	62	RGP1	intronic	NA
GBM_A_T6R1--GL	GL000224.1:3479	G	NA	50	0	50	35.020	8.277	0	0	0	44	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1a	GL000224.1:3479	G	C	52	0.019	48	31.229	11.858	1	35.000	0.000	36	1	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1b	GL000224.1:3479	G	C	14	0.071	13	30.462	10.461	1	35.000	0.000	10	1	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1c	GL000224.1:3479	G	C	28	0.071	26	32.654	9.073	2	39.500	2.121	19	2	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T6R1--R1d	GL000224.1:3479	G	C	26	0.154	22	33.045	10.943	4	38.250	3.500	19	4	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T7--1	10:3151403	C	T	46	0.239	35	35.171	7.548	11	37.545	4.480	32	10	PFKP	intronic	NA
GBM_A_T7--2	10:3151403	C	NA	52	0	52	36.692	6.345	0	0	0	47	0	PFKP	intronic	NA
GBM_A_T7--3	10:3151403	C	T	63	0.302	44	33.727	9.500	19	36.000	9.315	37	17	PFKP	intronic	NA
GBM_A_T7--4	10:3151403	C	T	88	0.284	63	37.302	5.488	25	38.240	2.990	56	25	PFKP	intronic	NA
GBM_A_T7--GL	10:3151403	C	NA	51	0	51	38.000	4.089	0	0	0	48	0	PFKP	intronic	NA
GBM_A_T7--1	10:5437475	A	T	91	0.341	59	34.119	7.003	31	34.065	7.629	50	27	TUBAL3	intronic	NA
GBM_A_T7--2	10:5437475	A	T	130	0.008	129	34.876	8.517	1	35.000	0.000	117	1	TUBAL3	intronic	NA
GBM_A_T7--3	10:5437475	A	T	189	0.291	134	36.007	4.819	55	35.055	6.270	128	51	TUBAL3	intronic	NA
GBM_A_T7--4	10:5437475	A	T	238	0.252	178	35.320	6.860	60	35.683	6.177	162	56	TUBAL3	intronic	NA
GBM_A_T7--GL	10:5437475	A	NA	115	0	115	36.113	6.475	0	0	0	106	0	TUBAL3	intronic	NA
GBM_A_T7--1	10:95097607	C	T	148	0.297	102	38.588	3.782	44	38.318	3.516	101	42	MYOF	exonic	nonsynonymous_SNV
GBM_A_T7--2	10:95097607	C	T	170	0.359	108	38.611	4.493	61	38.557	3.762	104	58	MYOF	exonic	nonsynonymous_SNV
GBM_A_T7--3	10:95097607	C	T	237	0.392	144	37.486	5.885	93	38.462	4.280	136	89	MYOF	exonic	nonsynonymous_SNV
GBM_A_T7--4	10:95097607	C	T	219	0.329	147	37.088	7.179	72	38.208	4.447	138	70	MYOF	exonic	nonsynonymous_SNV
GBM_A_T7--GL	10:95097607	C	NA	232	0	232	39.293	3.169	0	0	0	229	0	MYOF	exonic	nonsynonymous_SNV
GBM_A_T7--1	11:124386545	G	T	57	0.263	42	34.738	6.641	15	35.200	3.570	38	14	OR8B8(dist=75564),OR8B12(dist=26073)	intergenic	NA
GBM_A_T7--2	11:124386545	G	NA	30	0	30	36.700	3.789	0	0	0	28	0	OR8B8(dist=75564),OR8B12(dist=26073)	intergenic	NA
GBM_A_T7--3	11:124386545	G	T	41	0.463	22	37.364	3.064	19	37.947	3.894	22	19	OR8B8(dist=75564),OR8B12(dist=26073)	intergenic	NA
GBM_A_T7--4	11:124386545	G	T	42	0.286	30	36.133	4.058	12	36.750	3.361	28	12	OR8B8(dist=75564),OR8B12(dist=26073)	intergenic	NA
GBM_A_T7--GL	11:124386545	G	NA	52	0	52	35.308	8.422	0	0	0	47	0	OR8B8(dist=75564),OR8B12(dist=26073)	intergenic	NA
GBM_A_T7--1	11:130066665	G	A	105	0.514	51	36.490	6.448	54	37.185	5.776	47	51	ST14	intronic	NA
GBM_A_T7--2	11:130066665	G	A	112	0.009	110	36.527	5.218	1	41.000	0.000	100	1	ST14	intronic	NA
GBM_A_T7--3	11:130066665	G	A	162	0.543	74	37.919	3.483	88	36.795	5.198	73	84	ST14	intronic	NA
GBM_A_T7--4	11:130066665	G	A	188	0.489	96	37.667	3.914	92	37.391	6.501	94	87	ST14	intronic	NA
GBM_A_T7--GL	11:130066665	G	NA	80	0	80	38.350	5.482	0	0	0	77	0	ST14	intronic	NA
GBM_A_T7--1	11:48923208	G	NA	63	0	63	33.556	8.960	0	0	0	51	0	OR4A47(dist=411934),TRIM49B(dist=129944)	intergenic	NA
GBM_A_T7--2	11:48923208	G	A	53	0.151	44	35.023	7.277	8	34.250	8.242	39	7	OR4A47(dist=411934),TRIM49B(dist=129944)	intergenic	NA
GBM_A_T7--3	11:48923208	G	NA	65	0	65	35.123	8.576	0	0	0	58	0	OR4A47(dist=411934),TRIM49B(dist=129944)	intergenic	NA
GBM_A_T7--4	11:48923208	G	NA	50	0	50	35.180	7.278	0	0	0	43	0	OR4A47(dist=411934),TRIM49B(dist=129944)	intergenic	NA
GBM_A_T7--GL	11:48923208	G	NA	62	0	62	36.677	6.290	0	0	0	58	0	OR4A47(dist=411934),TRIM49B(dist=129944)	intergenic	NA
GBM_A_T7--1	1:149045633	C	A	79	0.380	48	38.438	4.232	30	35.700	9.945	47	27	NBPF25P	ncRNA_intronic	NA
GBM_A_T7--2	1:149045633	C	NA	60	0	59	36.949	7.101	0	0	0	53	0	NBPF25P	ncRNA_intronic	NA
GBM_A_T7--3	1:149045633	C	A	72	0.347	47	35.362	9.870	25	38.640	2.841	42	25	NBPF25P	ncRNA_intronic	NA
GBM_A_T7--4	1:149045633	C	A	75	0.347	49	37.061	7.096	26	37.192	7.462	45	25	NBPF25P	ncRNA_intronic	NA
GBM_A_T7--GL	1:149045633	C	NA	101	0	101	38.901	3.170	0	0	0	99	0	NBPF25P	ncRNA_intronic	NA
GBM_A_T7--1	11:55563678	T	C	231	0.450	127	37.669	5.027	104	38.019	4.821	121	101	OR5D14	exonic	nonsynonymous_SNV
GBM_A_T7--2	11:55563678	T	C	336	0.307	232	36.784	6.308	103	38.204	3.740	217	98	OR5D14	exonic	nonsynonymous_SNV
GBM_A_T7--3	11:55563678	T	C	382	0.421	221	36.611	5.999	161	37.658	4.782	205	152	OR5D14	exonic	nonsynonymous_SNV
GBM_A_T7--4	11:55563678	T	C	468	0.329	313	36.674	5.889	154	37.565	4.883	288	147	OR5D14	exonic	nonsynonymous_SNV
GBM_A_T7--GL	11:55563678	T	NA	252	0	252	37.988	4.157	0	0	0	240	0	OR5D14	exonic	nonsynonymous_SNV
GBM_A_T7--1	1:157736959	C	T	93	0.204	74	35.986	7.029	19	37.053	4.790	67	17	FCRL2	intronic	NA
GBM_A_T7--2	1:157736959	C	NA	94	0	93	37.656	4.412	0	0	0	91	0	FCRL2	intronic	NA
GBM_A_T7--3	1:157736959	C	T	134	0.291	95	36.663	6.386	39	38.000	3.112	88	38	FCRL2	intronic	NA
GBM_A_T7--4	1:157736959	C	T	161	0.342	106	37.255	4.152	55	35.727	6.953	101	47	FCRL2	intronic	NA
GBM_A_T7--GL	1:157736959	C	NA	92	0	92	38.239	3.433	0	0	0	88	0	FCRL2	intronic	NA
GBM_A_T7--1	1:158435335	T	A	84	0.238	64	36.859	5.962	20	34.800	8.358	59	19	OR10K1	upstream	NA
GBM_A_T7--2	1:158435335	T	NA	54	0	54	38.593	3.099	0	0	0	54	0	OR10K1	upstream	NA
GBM_A_T7--3	1:158435335	T	A	102	0.059	96	38.104	4.414	6	38.833	1.722	93	6	OR10K1	upstream	NA
GBM_A_T7--4	1:158435335	T	A	91	0.209	72	37.000	8.117	19	37.842	2.754	67	19	OR10K1	upstream	NA
GBM_A_T7--GL	1:158435335	T	NA	65	0	65	39.062	3.381	0	0	0	63	0	OR10K1	upstream	NA
GBM_A_T7--1	11:63141048	C	NA	52	0	52	36.462	7.752	0	0	0	48	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
GBM_A_T7--2	11:63141048	C	T	51	0.314	35	37.771	7.021	16	37.125	5.886	33	15	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
GBM_A_T7--3	11:63141048	C	NA	66	0	64	38.047	3.149	0	0	0	63	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
GBM_A_T7--4	11:63141048	C	NA	42	0	42	38.476	4.180	0	0	0	41	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
GBM_A_T7--GL	11:63141048	C	NA	54	0	54	38.241	3.083	0	0	0	53	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
GBM_A_T7--1	11:64034035	C	NA	59	0	59	30.780	10.937	0	0	0	44	0	PLCB3	intronic	NA
GBM_A_T7--2	11:64034035	C	T	73	0.164	61	34.738	6.658	12	35.333	3.627	53	11	PLCB3	intronic	NA
GBM_A_T7--3	11:64034035	C	NA	97	0	97	34.948	7.082	0	0	0	89	0	PLCB3	intronic	NA
GBM_A_T7--4	11:64034035	C	NA	87	0	86	34.058	6.539	0	0	0	76	0	PLCB3	intronic	NA
GBM_A_T7--GL	11:64034035	C	NA	83	0	83	35.241	7.142	0	0	0	76	0	PLCB3	intronic	NA
GBM_A_T7--1	1:170135792	G	NA	208	0	208	37.519	5.139	0	0	0	198	0	METTL11B	exonic	synonymous_SNV
GBM_A_T7--2	1:170135792	G	A	279	0.351	181	38.215	4.146	98	37.327	5.460	178	93	METTL11B	exonic	synonymous_SNV
GBM_A_T7--3	1:170135792	G	A	319	0.006	317	37.937	4.050	2	34.000	2.828	310	2	METTL11B	exonic	synonymous_SNV
GBM_A_T7--4	1:170135792	G	NA	394	0	393	37.313	5.645	0	0	0	373	0	METTL11B	exonic	synonymous_SNV
GBM_A_T7--GL	1:170135792	G	NA	240	0	240	38.671	4.626	0	0	0	234	0	METTL11B	exonic	synonymous_SNV
GBM_A_T7--1	11:86806280	A	C	137	0.036	53	37.830	4.415	5	32.600	3.130	51	4	TMEM135	intronic	NA
GBM_A_T7--2	11:86806280	A	C	77	0.026	45	38.044	6.075	2	38.000	1.414	44	2	TMEM135	intronic	NA
GBM_A_T7--3	11:86806280	A	NA	88	0	35	36.514	4.755	0	0	0	31	0	TMEM135	intronic	NA
GBM_A_T7--4	11:86806280	A	C	114	0.053	30	38.767	3.093	6	38.667	2.422	29	6	TMEM135	intronic	NA
GBM_A_T7--GL	11:86806280	A	NA	84	0	38	39.289	2.588	0	0	0	38	0	TMEM135	intronic	NA
GBM_A_T7--1	1:192769757	G	A	64	0.234	49	26.184	16.750	15	27.200	12.394	32	10	RGS13(dist=140317),RGS2(dist=8412)	intergenic	NA
GBM_A_T7--2	1:192769757	G	NA	46	0	45	31.800	12.573	0	0	0	38	0	RGS13(dist=140317),RGS2(dist=8412)	intergenic	NA
GBM_A_T7--3	1:192769757	G	A	42	0.238	32	29.594	14.828	10	25.800	16.652	23	7	RGS13(dist=140317),RGS2(dist=8412)	intergenic	NA
GBM_A_T7--4	1:192769757	G	A	46	0.174	38	27.447	16.021	8	36.375	4.241	26	8	RGS13(dist=140317),RGS2(dist=8412)	intergenic	NA
GBM_A_T7--GL	1:192769757	G	NA	46	0	45	36.178	6.965	0	0	0	41	0	RGS13(dist=140317),RGS2(dist=8412)	intergenic	NA
GBM_A_T7--1	1:216166513	A	C	172	0.291	122	37.623	5.388	50	37.660	4.039	117	47	USH2A	intronic	NA
GBM_A_T7--2	1:216166513	A	NA	249	0	249	37.129	6.862	0	0	0	233	0	USH2A	intronic	NA
GBM_A_T7--3	1:216166513	A	C	267	0.150	227	38.211	4.242	40	37.375	6.539	221	37	USH2A	intronic	NA
GBM_A_T7--4	1:216166513	A	C	293	0.283	210	36.814	6.685	83	37.169	4.881	194	78	USH2A	intronic	NA
GBM_A_T7--GL	1:216166513	A	NA	210	0	210	39.071	3.070	0	0	0	207	0	USH2A	intronic	NA
GBM_A_T7--1	1:224592332	G	NA	88	0	88	38.784	3.518	0	0	0	87	0	WDR26	intronic	NA
GBM_A_T7--2	1:224592332	G	C	80	0.150	68	38.471	3.585	12	38.500	2.431	66	12	WDR26	intronic	NA
GBM_A_T7--3	1:224592332	G	NA	66	0	65	38.892	3.052	0	0	0	64	0	WDR26	intronic	NA
GBM_A_T7--4	1:224592332	G	NA	60	0	60	37.300	6.347	0	0	0	57	0	WDR26	intronic	NA
GBM_A_T7--GL	1:224592332	G	NA	74	0	74	39.676	2.094	0	0	0	74	0	WDR26	intronic	NA
GBM_A_T7--1	12:50387942	G	A	151	0.358	97	38.196	4.210	54	38.370	2.735	93	54	RACGAP1	exonic	synonymous_SNV
GBM_A_T7--2	12:50387942	G	A	139	0.158	117	38.085	5.051	22	38.864	2.436	113	22	RACGAP1	exonic	synonymous_SNV
GBM_A_T7--3	12:50387942	G	A	197	0.391	120	38.375	4.225	77	37.597	6.122	114	74	RACGAP1	exonic	synonymous_SNV
GBM_A_T7--4	12:50387942	G	A	175	0.320	119	38.395	5.151	56	37.536	3.954	113	55	RACGAP1	exonic	synonymous_SNV
GBM_A_T7--GL	12:50387942	G	NA	223	0	223	39.677	3.764	0	0	0	218	0	RACGAP1	exonic	synonymous_SNV
GBM_A_T7--1	12:54350163	A	G	159	0.321	108	35.296	6.832	51	37.373	3.298	100	50	HOXC12	exonic	nonsynonymous_SNV
GBM_A_T7--2	12:54350163	A	G	158	0.253	118	35.373	6.260	40	34.200	8.762	108	35	HOXC12	exonic	nonsynonymous_SNV
GBM_A_T7--3	12:54350163	A	G	208	0.423	120	34.575	8.263	88	36.091	6.593	107	83	HOXC12	exonic	nonsynonymous_SNV
GBM_A_T7--4	12:54350163	A	G	233	0.309	161	35.683	6.206	72	36.917	5.336	144	70	HOXC12	exonic	nonsynonymous_SNV
GBM_A_T7--GL	12:54350163	A	NA	216	0	216	36.963	5.537	0	0	0	207	0	HOXC12	exonic	nonsynonymous_SNV
GBM_A_T7--1	12:6464120	A	T	48	0.479	25	31.480	7.042	23	33.652	6.012	19	18	SCNN1A	intronic	NA
GBM_A_T7--2	12:6464120	A	NA	53	0	53	32.396	7.507	0	0	0	43	0	SCNN1A	intronic	NA
GBM_A_T7--3	12:6464120	A	T	62	0.371	39	32.410	6.931	23	29.043	12.047	34	17	SCNN1A	intronic	NA
GBM_A_T7--4	12:6464120	A	T	62	0.403	35	32.914	6.523	25	34.000	8.206	27	21	SCNN1A	intronic	NA
GBM_A_T7--GL	12:6464120	A	NA	53	0	52	33.750	6.302	0	0	0	46	0	SCNN1A	intronic	NA
GBM_A_T7--1	12:8242941	T	C	124	0.323	82	37.817	3.791	40	37.000	4.489	79	36	NECAP1	intronic	NA
GBM_A_T7--2	12:8242941	T	NA	96	0	96	38.073	3.055	0	0	0	95	0	NECAP1	intronic	NA
GBM_A_T7--3	12:8242941	T	C	108	0.463	58	38.586	2.902	50	37.700	4.491	58	46	NECAP1	intronic	NA
GBM_A_T7--4	12:8242941	T	C	116	0.336	77	37.935	3.760	39	35.256	7.738	75	32	NECAP1	intronic	NA
GBM_A_T7--GL	12:8242941	T	NA	119	0	119	38.361	5.275	0	0	0	115	0	NECAP1	intronic	NA
GBM_A_T7--1	13:25171409	A	C	75	0.387	46	37.196	4.792	29	38.103	2.410	43	29	TPTE2P6	ncRNA_exonic	NA
GBM_A_T7--2	13:25171409	A	C	49	0.245	37	36.595	5.535	12	36.250	4.267	36	11	TPTE2P6	ncRNA_exonic	NA
GBM_A_T7--3	13:25171409	A	C	68	0.456	37	37.135	4.620	31	37.194	2.937	34	31	TPTE2P6	ncRNA_exonic	NA
GBM_A_T7--4	13:25171409	A	C	68	0.221	53	37.170	3.730	15	33.867	11.951	52	13	TPTE2P6	ncRNA_exonic	NA
GBM_A_T7--GL	13:25171409	A	NA	65	0	65	37.292	4.795	0	0	0	61	0	TPTE2P6	ncRNA_exonic	NA
GBM_A_T7--1	13:77738584	C	G	103	0.320	69	36.696	7.464	33	38.182	3.441	64	32	MYCBP2	intronic	NA
GBM_A_T7--2	13:77738584	C	G	61	0.213	48	38.000	6.230	13	38.538	3.526	46	13	MYCBP2	intronic	NA
GBM_A_T7--3	13:77738584	C	G	53	0.377	32	37.000	7.535	20	38.950	2.164	30	20	MYCBP2	intronic	NA
GBM_A_T7--4	13:77738584	C	G	76	0.368	48	38.458	3.358	28	38.714	2.637	46	28	MYCBP2	intronic	NA
GBM_A_T7--GL	13:77738584	C	NA	97	0	97	38.732	4.959	0	0	0	94	0	MYCBP2	intronic	NA
GBM_A_T7--1	13:89622698	C	A	57	0.368	36	36.694	6.969	21	34.952	9.195	33	17	LINC00433(dist=424934),LINC00353(dist=578350)	intergenic	NA
GBM_A_T7--2	13:89622698	C	NA	38	0	38	37.237	5.567	0	0	0	37	0	LINC00433(dist=424934),LINC00353(dist=578350)	intergenic	NA
GBM_A_T7--3	13:89622698	C	A	46	0.239	35	39.114	2.698	11	37.091	7.035	35	10	LINC00433(dist=424934),LINC00353(dist=578350)	intergenic	NA
GBM_A_T7--4	13:89622698	C	A	44	0.386	27	38.185	6.800	17	37.353	3.141	26	17	LINC00433(dist=424934),LINC00353(dist=578350)	intergenic	NA
GBM_A_T7--GL	13:89622698	C	NA	54	0	54	37.685	4.613	0	0	0	50	0	LINC00433(dist=424934),LINC00353(dist=578350)	intergenic	NA
GBM_A_T7--1	13:96264498	T	A	51	0.510	25	35.480	6.192	26	33.615	9.200	21	23	DZIP1	intronic	NA
GBM_A_T7--2	13:96264498	T	A	43	0.023	42	37.357	4.648	1	40.000	0.000	39	1	DZIP1	intronic	NA
GBM_A_T7--3	13:96264498	T	A	49	0.347	32	37.938	3.426	17	37.059	3.211	31	16	DZIP1	intronic	NA
GBM_A_T7--4	13:96264498	T	A	56	0.339	37	38.081	3.095	19	34.842	5.367	37	15	DZIP1	intronic	NA
GBM_A_T7--GL	13:96264498	T	NA	68	0	68	38.368	5.209	0	0	0	67	0	DZIP1	intronic	NA
GBM_A_T7--1	13:97638894	A	NA	50	0	50	37.920	3.757	0	0	0	48	0	OXGR1	UTR3	NA
GBM_A_T7--2	13:97638894	A	NA	59	0	59	38.661	3.309	0	0	0	58	0	OXGR1	UTR3	NA
GBM_A_T7--3	13:97638894	A	T	50	0.160	42	38.310	3.287	8	39.250	1.909	41	8	OXGR1	UTR3	NA
GBM_A_T7--4	13:97638894	A	T	66	0.045	63	38.016	3.554	3	40.000	1.000	63	3	OXGR1	UTR3	NA
GBM_A_T7--GL	13:97638894	A	NA	43	0	43	38.116	5.691	0	0	0	42	0	OXGR1	UTR3	NA
GBM_A_T7--1	14:22038246	A	G	136	0.353	88	36.080	6.661	48	37.708	3.747	79	47	OR10G3	exonic	synonymous_SNV
GBM_A_T7--2	14:22038246	A	G	231	0.307	160	37.106	5.663	71	36.845	6.591	153	66	OR10G3	exonic	synonymous_SNV
GBM_A_T7--3	14:22038246	A	G	252	0.381	156	35.750	6.871	96	37.062	6.239	139	91	OR10G3	exonic	synonymous_SNV
GBM_A_T7--4	14:22038246	A	G	296	0.358	189	36.757	5.511	106	36.708	6.052	175	100	OR10G3	exonic	synonymous_SNV
GBM_A_T7--GL	14:22038246	A	NA	195	0	195	38.374	3.204	0	0	0	190	0	OR10G3	exonic	synonymous_SNV
GBM_A_T7--1	14:24795233	A	C	44	0.136	15	33.267	9.838	6	34.000	1.095	13	6	ADCY4	intronic	NA
GBM_A_T7--2	14:24795233	A	C	50	0.020	29	36.552	6.478	1	35.000	0.000	26	1	ADCY4	intronic	NA
GBM_A_T7--3	14:24795233	A	C	55	0.036	28	35.036	6.107	2	35.000	0.000	25	2	ADCY4	intronic	NA
GBM_A_T7--4	14:24795233	A	C	63	0.079	32	34.875	6.843	5	25.600	13.885	31	3	ADCY4	intronic	NA
GBM_A_T7--GL	14:24795233	A	NA	52	0	34	37.500	3.136	0	0	0	34	0	ADCY4	intronic	NA
GBM_A_T7--1	14:44589924	C	A	96	0.375	60	34.767	5.518	36	36.139	7.011	53	34	NONE(dist=NONE),FSCB(dist=383430)	intergenic	NA
GBM_A_T7--2	14:44589924	C	A	79	0.304	55	33.691	8.463	24	37.208	3.310	45	23	NONE(dist=NONE),FSCB(dist=383430)	intergenic	NA
GBM_A_T7--3	14:44589924	C	A	99	0.333	66	36.227	5.648	33	36.576	6.901	62	32	NONE(dist=NONE),FSCB(dist=383430)	intergenic	NA
GBM_A_T7--4	14:44589924	C	A	89	0.337	59	34.780	7.353	30	36.533	4.091	50	28	NONE(dist=NONE),FSCB(dist=383430)	intergenic	NA
GBM_A_T7--GL	14:44589924	C	NA	92	0	91	36.044	5.684	0	0	0	85	0	NONE(dist=NONE),FSCB(dist=383430)	intergenic	NA
GBM_A_T7--1	14:73989203	G	A	99	0.172	81	34.926	7.160	17	36.941	4.069	73	16	HEATR4	exonic	synonymous_SNV
GBM_A_T7--2	14:73989203	G	NA	102	0	102	36.373	6.823	0	0	0	97	0	HEATR4	exonic	synonymous_SNV
GBM_A_T7--3	14:73989203	G	NA	110	0	110	35.645	5.927	0	0	0	100	0	HEATR4	exonic	synonymous_SNV
GBM_A_T7--4	14:73989203	G	A	106	0.085	97	35.619	6.294	9	34.444	4.953	87	7	HEATR4	exonic	synonymous_SNV
GBM_A_T7--GL	14:73989203	G	NA	123	0	123	37.244	4.138	0	0	0	120	0	HEATR4	exonic	synonymous_SNV
GBM_A_T7--1	14:95932381	G	NA	90	0	90	33.567	9.333	0	0	0	79	0	SYNE3	exonic	synonymous_SNV
GBM_A_T7--2	14:95932381	G	T	150	0.273	109	36.798	5.542	41	36.634	3.713	101	39	SYNE3	exonic	synonymous_SNV
GBM_A_T7--3	14:95932381	G	T	143	0.014	140	36.229	6.302	2	39.000	2.828	132	2	SYNE3	exonic	synonymous_SNV
GBM_A_T7--4	14:95932381	G	T	161	0.025	155	35.890	6.830	4	37.500	2.887	143	4	SYNE3	exonic	synonymous_SNV
GBM_A_T7--GL	14:95932381	G	NA	124	0	124	36.629	6.465	0	0	0	118	0	SYNE3	exonic	synonymous_SNV
GBM_A_T7--1	1:50791981	T	NA	54	0	51	27.353	12.214	0	0	0	30	0	ELAVL4(dist=124441),DMRTA2(dist=91242)	intergenic	NA
GBM_A_T7--2	1:50791981	T	NA	57	0	56	32.339	9.374	0	0	0	44	0	ELAVL4(dist=124441),DMRTA2(dist=91242)	intergenic	NA
GBM_A_T7--3	1:50791981	T	G	74	0.135	64	26.797	10.876	10	37.400	3.596	32	10	ELAVL4(dist=124441),DMRTA2(dist=91242)	intergenic	NA
GBM_A_T7--4	1:50791981	T	NA	67	0	64	28.875	10.036	0	0	0	37	0	ELAVL4(dist=124441),DMRTA2(dist=91242)	intergenic	NA
GBM_A_T7--GL	1:50791981	T	NA	80	0	78	32.936	7.433	0	0	0	62	0	ELAVL4(dist=124441),DMRTA2(dist=91242)	intergenic	NA
GBM_A_T7--1	15:101566207	C	NA	139	0	138	33.522	7.910	0	0	0	113	0	LRRK1	exonic	nonsynonymous_SNV
GBM_A_T7--2	15:101566207	C	T	142	0.620	54	34.111	8.816	88	33.409	8.469	47	75	LRRK1	exonic	nonsynonymous_SNV
GBM_A_T7--3	15:101566207	C	T	173	0.017	169	33.663	9.234	3	38.000	4.359	148	3	LRRK1	exonic	nonsynonymous_SNV
GBM_A_T7--4	15:101566207	C	NA	164	0	163	33.337	8.710	0	0	0	137	0	LRRK1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	15:101566207	C	NA	123	0	123	35.455	8.061	0	0	0	109	0	LRRK1	exonic	nonsynonymous_SNV
GBM_A_T7--1	15:34031917	G	T	80	0.312	55	37.636	3.582	25	37.880	2.403	54	25	RYR3	intronic	NA
GBM_A_T7--2	15:34031917	G	NA	95	0	94	37.734	4.122	0	0	0	89	0	RYR3	intronic	NA
GBM_A_T7--3	15:34031917	G	T	101	0.059	95	36.811	7.244	6	36.333	4.885	89	5	RYR3	intronic	NA
GBM_A_T7--4	15:34031917	G	T	108	0.278	78	37.679	4.161	30	35.233	7.375	76	26	RYR3	intronic	NA
GBM_A_T7--GL	15:34031917	G	NA	88	0	88	38.545	4.023	0	0	0	85	0	RYR3	intronic	NA
GBM_A_T7--1	15:56968955	A	C	208	0.361	133	38.346	4.328	75	38.920	3.544	129	72	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--2	15:56968955	A	C	189	0.138	163	37.914	4.931	26	39.808	1.898	153	26	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--3	15:56968955	A	C	251	0.355	162	38.025	5.986	89	39.101	2.650	154	89	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--4	15:56968955	A	C	266	0.297	187	38.487	3.855	79	38.911	2.919	183	78	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--GL	15:56968955	A	NA	210	0	210	39.595	2.231	0	0	0	210	0	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--1	15:56969839	G	C	138	0.384	85	39.024	2.803	53	38.566	4.782	84	51	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--2	15:56969839	G	C	76	0.184	62	37.468	7.596	14	36.214	6.996	58	12	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--3	15:56969839	G	C	113	0.363	72	38.986	3.217	41	38.610	3.584	71	40	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--4	15:56969839	G	C	91	0.385	55	38.673	4.299	35	38.486	4.068	52	33	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--GL	15:56969839	G	NA	116	0	115	39.183	4.646	0	0	0	110	0	ZNF280D	exonic	nonsynonymous_SNV
GBM_A_T7--1	15:69319099	T	NA	43	0	42	35.048	6.977	0	0	0	38	0	MIR548H4	ncRNA_intronic	NA
GBM_A_T7--2	15:69319099	T	A	43	0.605	17	35.824	7.780	26	34.462	6.414	16	23	MIR548H4	ncRNA_intronic	NA
GBM_A_T7--3	15:69319099	T	NA	54	0	54	34.704	6.558	0	0	0	47	0	MIR548H4	ncRNA_intronic	NA
GBM_A_T7--4	15:69319099	T	NA	52	0	51	36.294	4.977	0	0	0	49	0	MIR548H4	ncRNA_intronic	NA
GBM_A_T7--GL	15:69319099	T	NA	56	0	56	37.143	4.765	0	0	0	54	0	MIR548H4	ncRNA_intronic	NA
GBM_A_T7--1	15:91030642	G	NA	35	0	8	27.250	15.890	0	0	0	6	0	IQGAP1	intronic	NA
GBM_A_T7--2	15:91030642	G	T	39	0.103	12	35.417	5.213	4	31.500	3.317	11	3	IQGAP1	intronic	NA
GBM_A_T7--3	15:91030642	G	T	48	0.083	14	29.000	12.083	4	32.250	2.872	9	3	IQGAP1	intronic	NA
GBM_A_T7--4	15:91030642	G	T	42	0.048	16	28.500	12.780	2	33.000	2.828	10	2	IQGAP1	intronic	NA
GBM_A_T7--GL	15:91030642	G	NA	50	0	37	36.189	4.156	0	0	0	35	0	IQGAP1	intronic	NA
GBM_A_T7--1	15:91030643	C	G	36	0.028	9	23.778	17.319	1	31.000	0.000	5	1	IQGAP1	intronic	NA
GBM_A_T7--2	15:91030643	C	G	40	0.125	11	35.727	4.027	5	32.400	1.517	11	5	IQGAP1	intronic	NA
GBM_A_T7--3	15:91030643	C	G	49	0.122	13	33.538	5.911	6	26.333	12.160	9	4	IQGAP1	intronic	NA
GBM_A_T7--4	15:91030643	C	G	43	0.093	16	30.625	12.010	4	28.750	8.655	13	3	IQGAP1	intronic	NA
GBM_A_T7--GL	15:91030643	C	NA	50	0	37	36.432	4.879	0	0	0	34	0	IQGAP1	intronic	NA
GBM_A_T7--1	16:12155360	C	NA	53	0	53	33.698	8.013	0	0	0	39	0	SNX29	intronic	NA
GBM_A_T7--2	16:12155360	C	T	52	0.269	38	37.263	4.111	14	36.143	3.110	37	14	SNX29	intronic	NA
GBM_A_T7--3	16:12155360	C	NA	64	0	64	36.312	4.985	0	0	0	60	0	SNX29	intronic	NA
GBM_A_T7--4	16:12155360	C	NA	70	0	69	36.043	7.208	0	0	0	63	0	SNX29	intronic	NA
GBM_A_T7--GL	16:12155360	C	NA	41	0	41	37.732	4.278	0	0	0	40	0	SNX29	intronic	NA
GBM_A_T7--1	16:16463099	G	A	52	0.115	45	33.578	9.304	6	36.000	3.406	40	6	MIR6511A-2	downstream	NA
GBM_A_T7--2	16:16463099	G	NA	52	0	52	34.750	7.854	0	0	0	46	0	MIR6511A-2	downstream	NA
GBM_A_T7--3	16:16463099	G	A	74	0.176	61	35.115	6.909	13	37.077	3.427	56	13	MIR6511A-2	downstream	NA
GBM_A_T7--4	16:16463099	G	A	75	0.067	70	36.714	4.226	5	37.000	3.240	65	5	MIR6511A-2	downstream	NA
GBM_A_T7--GL	16:16463099	G	NA	49	0	49	36.612	5.016	0	0	0	46	0	MIR6511A-2	downstream	NA
GBM_A_T7--1	16:20337743	A	NA	46	0	46	37.717	5.227	0	0	0	44	0	GP2	exonic	nonsynonymous_SNV
GBM_A_T7--2	16:20337743	A	NA	40	0	40	37.375	5.812	0	0	0	38	0	GP2	exonic	nonsynonymous_SNV
GBM_A_T7--3	16:20337743	A	C	42	0.190	34	38.471	4.259	8	39.250	3.808	31	8	GP2	exonic	nonsynonymous_SNV
GBM_A_T7--4	16:20337743	A	NA	55	0	55	38.091	5.471	0	0	0	53	0	GP2	exonic	nonsynonymous_SNV
GBM_A_T7--GL	16:20337743	A	NA	81	0	80	39.000	2.877	0	0	0	78	0	GP2	exonic	nonsynonymous_SNV
GBM_A_T7--1	16:24921856	T	NA	27	0	27	36.444	6.216	0	0	0	25	0	SLC5A11	intronic	NA
GBM_A_T7--2	16:24921856	T	A	23	0.217	18	35.889	5.212	5	37.200	1.789	15	5	SLC5A11	intronic	NA
GBM_A_T7--3	16:24921856	T	NA	21	0	21	38.190	4.057	0	0	0	20	0	SLC5A11	intronic	NA
GBM_A_T7--4	16:24921856	T	NA	32	0	32	36.500	3.037	0	0	0	32	0	SLC5A11	intronic	NA
GBM_A_T7--GL	16:24921856	T	NA	58	0	58	36.879	5.607	0	0	0	56	0	SLC5A11	intronic	NA
GBM_A_T7--1	16:3439953	G	T	146	0.226	113	36.442	6.150	33	36.667	5.254	104	31	ZSCAN32	intronic	NA
GBM_A_T7--2	16:3439953	G	T	186	0.220	145	37.172	6.107	41	38.585	3.413	134	40	ZSCAN32	intronic	NA
GBM_A_T7--3	16:3439953	G	T	211	0.299	148	37.439	5.168	63	36.698	6.210	139	59	ZSCAN32	intronic	NA
GBM_A_T7--4	16:3439953	G	T	241	0.303	168	37.101	5.855	73	38.014	4.071	157	72	ZSCAN32	intronic	NA
GBM_A_T7--GL	16:3439953	G	NA	168	0	168	37.827	5.211	0	0	0	161	0	ZSCAN32	intronic	NA
GBM_A_T7--1	16:48212426	G	A	65	0.385	39	34.615	8.356	25	36.240	5.570	33	22	ABCC11	intronic	NA
GBM_A_T7--2	16:48212426	G	A	125	0.016	123	35.943	6.953	2	37.500	2.121	110	2	ABCC11	intronic	NA
GBM_A_T7--3	16:48212426	G	A	95	0.368	60	35.783	7.799	35	37.600	3.950	54	33	ABCC11	intronic	NA
GBM_A_T7--4	16:48212426	G	A	123	0.358	79	36.089	7.461	44	38.000	5.435	73	43	ABCC11	intronic	NA
GBM_A_T7--GL	16:48212426	G	NA	87	0	87	37.598	5.463	0	0	0	83	0	ABCC11	intronic	NA
GBM_A_T7--1	16:56484978	C	NA	135	0	135	34.289	7.617	0	0	0	117	0	NUDT21	intronic	NA
GBM_A_T7--2	16:56484978	C	T	144	0.299	101	34.089	9.173	43	36.349	4.203	88	40	NUDT21	intronic	NA
GBM_A_T7--3	16:56484978	C	NA	185	0	184	35.000	7.185	0	0	0	166	0	NUDT21	intronic	NA
GBM_A_T7--4	16:56484978	C	NA	179	0	179	34.034	8.354	0	0	0	156	0	NUDT21	intronic	NA
GBM_A_T7--GL	16:56484978	C	NA	183	0	183	36.634	5.055	0	0	0	179	0	NUDT21	intronic	NA
GBM_A_T7--1	16:85111032	A	NA	63	0	63	33.730	6.251	0	0	0	50	0	KIAA0513	exonic	synonymous_SNV
GBM_A_T7--2	16:85111032	A	G	39	0.179	32	36.375	6.997	7	33.286	4.271	31	6	KIAA0513	exonic	synonymous_SNV
GBM_A_T7--3	16:85111032	A	NA	43	0	43	35.721	4.992	0	0	0	41	0	KIAA0513	exonic	synonymous_SNV
GBM_A_T7--4	16:85111032	A	NA	46	0	46	35.152	4.779	0	0	0	42	0	KIAA0513	exonic	synonymous_SNV
GBM_A_T7--GL	16:85111032	A	NA	66	0	66	37.955	3.462	0	0	0	65	0	KIAA0513	exonic	synonymous_SNV
GBM_A_T7--1	17:11865433	C	T	124	0.823	21	38.286	2.952	102	33.912	10.031	21	86	DNAH9	exonic	nonsynonymous_SNV
GBM_A_T7--2	17:11865433	C	T	156	0.590	64	36.750	7.597	92	35.402	8.457	60	81	DNAH9	exonic	nonsynonymous_SNV
GBM_A_T7--3	17:11865433	C	T	160	0.800	32	34.562	9.850	128	36.773	6.845	28	119	DNAH9	exonic	nonsynonymous_SNV
GBM_A_T7--4	17:11865433	C	T	174	0.661	59	36.695	7.337	115	36.061	8.066	56	103	DNAH9	exonic	nonsynonymous_SNV
GBM_A_T7--GL	17:11865433	C	NA	189	0	189	37.429	6.604	0	0	0	183	0	DNAH9	exonic	nonsynonymous_SNV
GBM_A_T7--1	17:41934406	A	G	46	0.348	29	32.000	9.385	16	36.188	5.332	21	14	CD300LG	intronic	NA
GBM_A_T7--2	17:41934406	A	G	44	0.364	28	33.750	7.183	16	34.875	9.294	22	15	CD300LG	intronic	NA
GBM_A_T7--3	17:41934406	A	G	49	0.408	29	34.345	8.973	20	35.200	9.059	27	17	CD300LG	intronic	NA
GBM_A_T7--4	17:41934406	A	G	83	0.313	57	34.789	7.821	26	35.962	7.324	51	23	CD300LG	intronic	NA
GBM_A_T7--GL	17:41934406	A	NA	62	0	60	35.633	8.074	0	0	0	54	0	CD300LG	intronic	NA
GBM_A_T7--1	1:74507485	A	NA	194	0	193	38.041	5.057	0	0	0	184	0	LRRIQ3	exonic	nonsynonymous_SNV
GBM_A_T7--2	1:74507485	A	G	157	0.287	112	37.982	5.264	45	37.489	4.703	107	41	LRRIQ3	exonic	nonsynonymous_SNV
GBM_A_T7--3	1:74507485	A	NA	222	0	222	37.779	6.501	0	0	0	209	0	LRRIQ3	exonic	nonsynonymous_SNV
GBM_A_T7--4	1:74507485	A	NA	291	0	291	38.337	4.651	0	0	0	279	0	LRRIQ3	exonic	nonsynonymous_SNV
GBM_A_T7--GL	1:74507485	A	NA	210	0	210	39.252	2.700	0	0	0	207	0	LRRIQ3	exonic	nonsynonymous_SNV
GBM_A_T7--1	17:67309286	G	T	172	0.378	107	37.822	5.425	65	37.292	6.928	103	60	ABCA5	exonic	nonsynonymous_SNV
GBM_A_T7--2	17:67309286	G	T	112	0.286	80	38.300	4.740	32	38.156	7.108	78	31	ABCA5	exonic	nonsynonymous_SNV
GBM_A_T7--3	17:67309286	G	T	135	0.333	89	39.225	3.680	45	38.756	3.024	88	45	ABCA5	exonic	nonsynonymous_SNV
GBM_A_T7--4	17:67309286	G	T	137	0.328	92	38.924	3.032	45	39.267	2.950	90	45	ABCA5	exonic	nonsynonymous_SNV
GBM_A_T7--GL	17:67309286	G	NA	180	0	180	39.100	3.353	0	0	0	176	0	ABCA5	exonic	nonsynonymous_SNV
GBM_A_T7--1	17:7577572	T	C	71	0.732	19	36.263	5.194	52	34.827	8.298	17	44	TP53	exonic	nonsynonymous_SNV
GBM_A_T7--2	17:7577572	T	C	59	0.678	19	35.526	8.579	40	36.825	6.898	18	37	TP53	exonic	nonsynonymous_SNV
GBM_A_T7--3	17:7577572	T	C	78	0.885	9	36.889	2.934	69	36.783	7.282	9	64	TP53	exonic	nonsynonymous_SNV
GBM_A_T7--4	17:7577572	T	C	83	0.795	17	38.412	2.551	66	37.197	5.794	17	62	TP53	exonic	nonsynonymous_SNV
GBM_A_T7--GL	17:7577572	T	NA	78	0	78	37.718	5.441	0	0	0	76	0	TP53	exonic	nonsynonymous_SNV
GBM_A_T7--1	18:52927147	T	NA	129	0	129	35.016	4.776	0	0	0	121	0	TCF4	intronic	NA
GBM_A_T7--2	18:52927147	T	C	116	0.241	88	33.886	3.967	28	34.643	5.704	77	26	TCF4	intronic	NA
GBM_A_T7--3	18:52927147	T	NA	113	0	113	33.823	5.544	0	0	0	99	0	TCF4	intronic	NA
GBM_A_T7--4	18:52927147	T	NA	162	0	161	34.261	6.044	0	0	0	147	0	TCF4	intronic	NA
GBM_A_T7--GL	18:52927147	T	NA	131	0	131	35.893	3.393	0	0	0	126	0	TCF4	intronic	NA
GBM_A_T7--1	18:74617418	A	T	71	0.408	42	38.000	4.478	29	38.655	3.498	40	28	ZNF236	intronic	NA
GBM_A_T7--2	18:74617418	A	T	53	0.321	35	38.029	3.714	17	39.294	2.085	34	17	ZNF236	intronic	NA
GBM_A_T7--3	18:74617418	A	T	49	0.531	23	37.652	4.618	26	38.500	2.404	20	26	ZNF236	intronic	NA
GBM_A_T7--4	18:74617418	A	T	64	0.344	42	38.786	4.297	22	37.091	8.502	41	20	ZNF236	intronic	NA
GBM_A_T7--GL	18:74617418	A	NA	69	0	69	39.246	2.470	0	0	0	69	0	ZNF236	intronic	NA
GBM_A_T7--1	19:14997752	C	G	127	0.417	74	37.608	4.040	53	37.000	4.756	73	51	OR7A17(dist=5585),OR7C2(dist=54549)	intergenic	NA
GBM_A_T7--2	19:14997752	C	G	101	0.287	72	36.500	4.624	29	36.793	4.083	68	26	OR7A17(dist=5585),OR7C2(dist=54549)	intergenic	NA
GBM_A_T7--3	19:14997752	C	G	129	0.442	72	37.306	3.877	57	37.807	3.791	70	56	OR7A17(dist=5585),OR7C2(dist=54549)	intergenic	NA
GBM_A_T7--4	19:14997752	C	G	138	0.333	92	37.359	5.018	46	36.913	3.892	89	45	OR7A17(dist=5585),OR7C2(dist=54549)	intergenic	NA
GBM_A_T7--GL	19:14997752	C	NA	124	0	124	38.016	3.178	0	0	0	122	0	OR7A17(dist=5585),OR7C2(dist=54549)	intergenic	NA
GBM_A_T7--1	1:92108210	A	NA	163	0	163	36.951	5.488	0	0	0	151	0	CDC7(dist=116889),TGFBR3(dist=37690)	intergenic	NA
GBM_A_T7--2	1:92108210	A	T	123	0.260	91	37.516	4.023	32	38.406	3.627	88	31	CDC7(dist=116889),TGFBR3(dist=37690)	intergenic	NA
GBM_A_T7--3	1:92108210	A	NA	139	0	138	37.862	5.661	0	0	0	132	0	CDC7(dist=116889),TGFBR3(dist=37690)	intergenic	NA
GBM_A_T7--4	1:92108210	A	NA	152	0	152	37.737	4.418	0	0	0	148	0	CDC7(dist=116889),TGFBR3(dist=37690)	intergenic	NA
GBM_A_T7--GL	1:92108210	A	NA	142	0	142	38.796	3.118	0	0	0	141	0	CDC7(dist=116889),TGFBR3(dist=37690)	intergenic	NA
GBM_A_T7--1	1:92710342	G	C	140	0.471	74	37.743	5.048	66	37.712	6.035	70	62	C1orf146	exonic	synonymous_SNV
GBM_A_T7--2	1:92710342	G	C	112	0.214	88	39.261	2.926	24	39.125	3.418	87	24	C1orf146	exonic	synonymous_SNV
GBM_A_T7--3	1:92710342	G	C	131	0.328	87	38.414	3.395	43	38.395	3.492	85	41	C1orf146	exonic	synonymous_SNV
GBM_A_T7--4	1:92710342	G	C	109	0.358	70	37.743	7.546	39	39.385	2.592	66	38	C1orf146	exonic	synonymous_SNV
GBM_A_T7--GL	1:92710342	G	NA	131	0	131	39.573	3.220	0	0	0	129	0	C1orf146	exonic	synonymous_SNV
GBM_A_T7--1	19:3738640	G	C	60	0.400	36	33.167	11.614	24	29.333	12.662	31	18	TJP3	exonic	nonsynonymous_SNV
GBM_A_T7--2	19:3738640	G	C	86	0.314	59	35.915	7.120	27	34.889	8.140	56	25	TJP3	exonic	nonsynonymous_SNV
GBM_A_T7--3	19:3738640	G	C	110	0.391	67	35.149	5.909	43	34.884	6.863	62	35	TJP3	exonic	nonsynonymous_SNV
GBM_A_T7--4	19:3738640	G	C	136	0.316	93	34.677	7.776	43	34.279	8.407	85	37	TJP3	exonic	nonsynonymous_SNV
GBM_A_T7--GL	19:3738640	G	NA	82	0	82	35.171	8.719	0	0	0	75	0	TJP3	exonic	nonsynonymous_SNV
GBM_A_T7--1	19:38991267	G	A	79	0.203	63	33.524	6.327	16	29.062	12.850	53	9	RYR1	exonic	nonsynonymous_SNV
GBM_A_T7--2	19:38991267	G	NA	99	0	99	32.899	7.352	0	0	0	83	0	RYR1	exonic	nonsynonymous_SNV
GBM_A_T7--3	19:38991267	G	A	93	0.129	81	34.235	6.134	12	32.167	10.530	72	10	RYR1	exonic	nonsynonymous_SNV
GBM_A_T7--4	19:38991267	G	A	108	0.259	80	34.275	7.262	28	35.679	7.144	72	24	RYR1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	19:38991267	G	NA	84	0	84	35.357	4.008	0	0	0	80	0	RYR1	exonic	nonsynonymous_SNV
GBM_A_T7--1	19:47935187	C	NA	50	0	50	37.720	3.540	0	0	0	49	0	SLC8A2	intronic	NA
GBM_A_T7--2	19:47935187	C	T	63	0.349	41	37.390	3.680	22	39.727	1.453	40	22	SLC8A2	intronic	NA
GBM_A_T7--3	19:47935187	C	NA	64	0	63	38.175	3.572	0	0	0	61	0	SLC8A2	intronic	NA
GBM_A_T7--4	19:47935187	C	NA	53	0	53	37.604	5.123	0	0	0	51	0	SLC8A2	intronic	NA
GBM_A_T7--GL	19:47935187	C	NA	55	0	55	38.800	3.648	0	0	0	52	0	SLC8A2	intronic	NA
GBM_A_T7--1	19:50100979	C	NA	34	0	34	26.441	13.482	0	0	0	21	0	PRR12	exonic	synonymous_SNV
GBM_A_T7--2	19:50100979	C	G	41	0.171	34	32.353	9.329	7	36.571	2.936	29	7	PRR12	exonic	synonymous_SNV
GBM_A_T7--3	19:50100979	C	NA	37	0	37	32.892	8.034	0	0	0	32	0	PRR12	exonic	synonymous_SNV
GBM_A_T7--4	19:50100979	C	NA	43	0	42	34.143	6.015	0	0	0	39	0	PRR12	exonic	synonymous_SNV
GBM_A_T7--GL	19:50100979	C	NA	45	0	45	33.378	8.807	0	0	0	39	0	PRR12	exonic	synonymous_SNV
GBM_A_T7--1	1:9658524	G	T	71	0.352	46	34.457	9.759	25	29.760	13.724	41	17	TMEM201	exonic	nonsynonymous_SNV
GBM_A_T7--2	1:9658524	G	T	78	0.013	77	33.416	9.053	1	40.000	0.000	66	1	TMEM201	exonic	nonsynonymous_SNV
GBM_A_T7--3	1:9658524	G	T	74	0.351	48	33.896	9.207	26	36.308	3.210	41	26	TMEM201	exonic	nonsynonymous_SNV
GBM_A_T7--4	1:9658524	G	T	122	0.262	90	34.622	7.078	32	33.688	9.519	82	26	TMEM201	exonic	nonsynonymous_SNV
GBM_A_T7--GL	1:9658524	G	NA	98	0	98	36.296	6.256	0	0	0	94	0	TMEM201	exonic	nonsynonymous_SNV
GBM_A_T7--1	20:31789403	C	T	175	0.166	146	37.555	5.470	29	35.207	5.260	138	26	BPIFA4P	ncRNA_exonic	NA
GBM_A_T7--2	20:31789403	C	NA	211	0	211	36.588	7.153	0	0	0	195	0	BPIFA4P	ncRNA_exonic	NA
GBM_A_T7--3	20:31789403	C	NA	253	0	251	36.522	7.046	0	0	0	226	0	BPIFA4P	ncRNA_exonic	NA
GBM_A_T7--4	20:31789403	C	T	305	0.118	268	36.343	7.654	36	36.806	3.471	238	36	BPIFA4P	ncRNA_exonic	NA
GBM_A_T7--GL	20:31789403	C	NA	222	0	222	38.901	3.146	0	0	0	217	0	BPIFA4P	ncRNA_exonic	NA
GBM_A_T7--1	20:55206427	C	NA	38	0	37	30.622	11.253	0	0	0	27	0	TFAP2C	exonic	nonsynonymous_SNV
GBM_A_T7--2	20:55206427	C	T	47	0.191	38	36.316	7.386	9	34.778	5.518	36	7	TFAP2C	exonic	nonsynonymous_SNV
GBM_A_T7--3	20:55206427	C	NA	42	0	42	29.643	12.281	0	0	0	28	0	TFAP2C	exonic	nonsynonymous_SNV
GBM_A_T7--4	20:55206427	C	NA	56	0	56	34.964	7.112	0	0	0	48	0	TFAP2C	exonic	nonsynonymous_SNV
GBM_A_T7--GL	20:55206427	C	NA	61	0	61	36.918	3.446	0	0	0	61	0	TFAP2C	exonic	nonsynonymous_SNV
GBM_A_T7--1	20:56179527	G	A	107	0.439	59	33.339	8.947	47	34.638	5.907	48	40	ZBP1	UTR3	NA
GBM_A_T7--2	20:56179527	G	A	104	0.404	61	35.279	7.868	42	35.857	8.360	54	39	ZBP1	UTR3	NA
GBM_A_T7--3	20:56179527	G	A	131	0.427	75	36.560	5.142	56	35.661	7.357	66	48	ZBP1	UTR3	NA
GBM_A_T7--4	20:56179527	G	A	152	0.342	99	35.404	7.714	52	36.019	6.323	87	48	ZBP1	UTR3	NA
GBM_A_T7--GL	20:56179527	G	NA	124	0	124	37.960	4.926	0	0	0	118	0	ZBP1	UTR3	NA
GBM_A_T7--1	20:858877	G	NA	60	0	59	35.712	4.839	0	0	0	52	0	ANGPT4	exonic	nonsynonymous_SNV
GBM_A_T7--2	20:858877	G	T	54	0.296	38	36.053	7.075	16	38.062	3.696	34	16	ANGPT4	exonic	nonsynonymous_SNV
GBM_A_T7--3	20:858877	G	NA	48	0	48	36.917	5.808	0	0	0	46	0	ANGPT4	exonic	nonsynonymous_SNV
GBM_A_T7--4	20:858877	G	NA	58	0	58	37.448	4.492	0	0	0	52	0	ANGPT4	exonic	nonsynonymous_SNV
GBM_A_T7--GL	20:858877	G	NA	62	0	62	38.387	2.772	0	0	0	61	0	ANGPT4	exonic	nonsynonymous_SNV
GBM_A_T7--1	21:14756952	T	A	233	0.330	156	38.840	2.438	77	38.532	3.165	155	75	ANKRD30BP2(dist=266381),MIR3156-3(dist=21753)	intergenic	NA
GBM_A_T7--2	21:14756952	T	A	342	0.216	268	37.840	4.756	74	37.676	5.070	254	70	ANKRD30BP2(dist=266381),MIR3156-3(dist=21753)	intergenic	NA
GBM_A_T7--3	21:14756952	T	A	403	0.298	283	38.307	4.473	120	38.300	3.903	275	117	ANKRD30BP2(dist=266381),MIR3156-3(dist=21753)	intergenic	NA
GBM_A_T7--4	21:14756952	T	A	488	0.277	353	38.181	4.503	135	39.074	2.445	342	134	ANKRD30BP2(dist=266381),MIR3156-3(dist=21753)	intergenic	NA
GBM_A_T7--GL	21:14756952	T	NA	367	0	367	39.360	3.034	0	0	0	364	0	ANKRD30BP2(dist=266381),MIR3156-3(dist=21753)	intergenic	NA
GBM_A_T7--1	21:19732166	A	T	189	0.413	111	37.946	6.304	78	39.590	2.382	103	77	TMPRSS15	exonic	nonsynonymous_SNV
GBM_A_T7--2	21:19732166	A	T	112	0.286	80	38.125	5.088	32	39.188	2.278	78	32	TMPRSS15	exonic	nonsynonymous_SNV
GBM_A_T7--3	21:19732166	A	T	141	0.369	89	38.899	3.415	52	38.269	4.353	86	49	TMPRSS15	exonic	nonsynonymous_SNV
GBM_A_T7--4	21:19732166	A	T	150	0.333	100	38.500	3.566	50	39.220	3.352	96	48	TMPRSS15	exonic	nonsynonymous_SNV
GBM_A_T7--GL	21:19732166	A	NA	155	0	155	39.690	2.206	0	0	0	155	0	TMPRSS15	exonic	nonsynonymous_SNV
GBM_A_T7--1	21:30359326	G	NA	43	0	43	38.116	5.319	0	0	0	42	0	LTN1	intronic	NA
GBM_A_T7--2	21:30359326	G	A	22	0.182	18	38.667	2.449	4	35.750	4.113	18	4	LTN1	intronic	NA
GBM_A_T7--3	21:30359326	G	NA	25	0	25	39.000	2.708	0	0	0	25	0	LTN1	intronic	NA
GBM_A_T7--4	21:30359326	G	NA	31	0	31	37.226	4.537	0	0	0	28	0	LTN1	intronic	NA
GBM_A_T7--GL	21:30359326	G	NA	47	0	47	38.723	3.105	0	0	0	47	0	LTN1	intronic	NA
GBM_A_T7--1	2:130785981	G	NA	196	0	196	35.852	8.008	0	0	0	179	0	FAR2P1	ncRNA_exonic	NA
GBM_A_T7--2	2:130785981	G	T	168	0.304	117	36.803	6.904	51	36.667	6.650	108	47	FAR2P1	ncRNA_exonic	NA
GBM_A_T7--3	2:130785981	G	NA	194	0	194	37.216	6.078	0	0	0	182	0	FAR2P1	ncRNA_exonic	NA
GBM_A_T7--4	2:130785981	G	NA	240	0	240	37.046	5.461	0	0	0	226	0	FAR2P1	ncRNA_exonic	NA
GBM_A_T7--GL	2:130785981	G	NA	204	0	204	38.191	4.128	0	0	0	198	0	FAR2P1	ncRNA_exonic	NA
GBM_A_T7--1	21:31989020	T	C	58	0.431	33	38.273	3.054	25	36.240	8.393	32	22	KRTAP20-1	downstream	NA
GBM_A_T7--2	21:31989020	T	C	101	0.248	76	37.737	3.587	25	38.440	3.015	73	25	KRTAP20-1	downstream	NA
GBM_A_T7--3	21:31989020	T	C	122	0.451	66	39.121	3.298	55	39.218	2.409	64	55	KRTAP20-1	downstream	NA
GBM_A_T7--4	21:31989020	T	C	134	0.269	97	37.835	5.307	36	37.639	3.885	93	35	KRTAP20-1	downstream	NA
GBM_A_T7--GL	21:31989020	T	NA	86	0	86	39.430	2.394	0	0	0	86	0	KRTAP20-1	downstream	NA
GBM_A_T7--1	2:133010882	C	A	32	0.031	31	36.839	3.848	1	36.000	0.000	30	1	ANKRD30BL	ncRNA_intronic	NA
GBM_A_T7--2	2:133010882	C	A	27	0.111	24	36.542	7.929	3	37.000	3.606	23	3	ANKRD30BL	ncRNA_intronic	NA
GBM_A_T7--3	2:133010882	C	A	46	0.152	39	35.692	7.709	7	38.286	2.360	34	7	ANKRD30BL	ncRNA_intronic	NA
GBM_A_T7--4	2:133010882	C	A	39	0.256	29	36.862	3.701	10	36.700	2.058	27	10	ANKRD30BL	ncRNA_intronic	NA
GBM_A_T7--GL	2:133010882	C	NA	41	0	41	37.732	2.674	0	0	0	41	0	ANKRD30BL	ncRNA_intronic	NA
GBM_A_T7--1	21:40578004	A	C	137	0.365	87	38.126	4.245	50	37.900	3.321	83	48	BRWD1	intronic	NA
GBM_A_T7--2	21:40578004	A	C	142	0.239	107	38.224	5.950	34	37.735	5.583	103	33	BRWD1	intronic	NA
GBM_A_T7--3	21:40578004	A	C	160	0.388	98	37.602	6.648	62	39.145	2.751	91	61	BRWD1	intronic	NA
GBM_A_T7--4	21:40578004	A	C	198	0.308	137	38.080	3.708	61	38.525	3.186	130	59	BRWD1	intronic	NA
GBM_A_T7--GL	21:40578004	A	NA	107	0	107	39.458	2.600	0	0	0	106	0	BRWD1	intronic	NA
GBM_A_T7--1	2:153527822	C	T	255	0.427	146	38.795	2.912	109	38.853	2.921	144	108	PRPF40A	exonic	nonsynonymous_SNV
GBM_A_T7--2	2:153527822	C	T	191	0.010	189	38.529	4.982	2	41.000	0.000	184	2	PRPF40A	exonic	nonsynonymous_SNV
GBM_A_T7--3	2:153527822	C	T	188	0.463	101	38.178	4.757	87	38.609	4.426	97	85	PRPF40A	exonic	nonsynonymous_SNV
GBM_A_T7--4	2:153527822	C	T	209	0.254	156	38.231	4.486	53	38.585	4.948	151	51	PRPF40A	exonic	nonsynonymous_SNV
GBM_A_T7--GL	2:153527822	C	NA	244	0	244	39.074	3.562	0	0	0	239	0	PRPF40A	exonic	nonsynonymous_SNV
GBM_A_T7--1	2:166732631	T	A	110	0.373	69	39.145	5.143	41	38.073	3.704	67	39	TTC21B	intronic	NA
GBM_A_T7--2	2:166732631	T	A	85	0.012	84	38.345	3.959	1	41.000	0.000	82	1	TTC21B	intronic	NA
GBM_A_T7--3	2:166732631	T	A	87	0.414	51	39.431	1.993	36	38.556	3.139	51	36	TTC21B	intronic	NA
GBM_A_T7--4	2:166732631	T	A	104	0.317	71	38.127	4.852	33	37.758	5.916	69	31	TTC21B	intronic	NA
GBM_A_T7--GL	2:166732631	T	NA	103	0	103	39.476	2.722	0	0	0	101	0	TTC21B	intronic	NA
GBM_A_T7--1	2:202154667	A	T	35	0.400	21	28.952	8.115	14	32.571	8.510	13	11	ALS2CR12	intronic	NA
GBM_A_T7--2	2:202154667	A	T	36	0.444	20	31.350	7.315	16	34.875	4.911	16	13	ALS2CR12	intronic	NA
GBM_A_T7--3	2:202154667	A	T	42	0.405	24	31.292	7.202	17	36.000	4.650	20	15	ALS2CR12	intronic	NA
GBM_A_T7--4	2:202154667	A	T	49	0.429	28	30.714	7.649	21	35.429	5.316	22	16	ALS2CR12	intronic	NA
GBM_A_T7--GL	2:202154667	A	NA	41	0	41	31.293	8.066	0	0	0	32	0	ALS2CR12	intronic	NA
GBM_A_T7--1	2:207572123	G	A	142	0.451	78	37.397	4.727	64	37.516	4.090	75	61	DYTN	exonic	stopgain_SNV
GBM_A_T7--2	2:207572123	G	A	93	0.323	63	38.333	3.570	30	37.600	5.834	61	28	DYTN	exonic	stopgain_SNV
GBM_A_T7--3	2:207572123	G	A	139	0.388	85	38.459	4.699	54	38.167	3.424	84	53	DYTN	exonic	stopgain_SNV
GBM_A_T7--4	2:207572123	G	A	130	0.400	78	38.128	3.089	52	37.635	4.252	77	49	DYTN	exonic	stopgain_SNV
GBM_A_T7--GL	2:207572123	G	NA	178	0	178	38.646	3.280	0	0	0	175	0	DYTN	exonic	stopgain_SNV
GBM_A_T7--1	2:209113112	C	T	122	0.418	70	35.271	8.629	51	35.020	6.361	60	45	IDH1	exonic	nonsynonymous_SNV
GBM_A_T7--2	2:209113112	C	T	114	0.289	81	37.012	7.038	33	37.970	2.953	74	33	IDH1	exonic	nonsynonymous_SNV
GBM_A_T7--3	2:209113112	C	T	120	0.492	61	36.262	7.804	59	35.051	10.088	54	52	IDH1	exonic	nonsynonymous_SNV
GBM_A_T7--4	2:209113112	C	T	122	0.303	84	35.905	7.345	37	37.054	5.385	73	35	IDH1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	2:209113112	C	NA	159	0	159	37.610	5.409	0	0	0	153	0	IDH1	exonic	nonsynonymous_SNV
GBM_A_T7--1	2:21230912	T	C	225	0.351	143	38.147	3.996	79	38.544	4.888	137	78	APOB	exonic	nonsynonymous_SNV
GBM_A_T7--2	2:21230912	T	C	263	0.019	258	37.857	4.857	5	36.600	3.912	248	5	APOB	exonic	nonsynonymous_SNV
GBM_A_T7--3	2:21230912	T	C	309	0.401	185	38.254	3.721	124	37.944	4.623	178	120	APOB	exonic	nonsynonymous_SNV
GBM_A_T7--4	2:21230912	T	C	354	0.353	228	38.298	4.161	125	37.784	5.282	217	118	APOB	exonic	nonsynonymous_SNV
GBM_A_T7--GL	2:21230912	T	NA	264	0	264	39.394	2.676	0	0	0	262	0	APOB	exonic	nonsynonymous_SNV
GBM_A_T7--1	22:18650764	T	A	194	0.402	115	37.878	4.931	78	36.564	5.808	112	73	USP18	exonic	synonymous_SNV
GBM_A_T7--2	22:18650764	T	A	250	0.268	183	37.115	5.032	67	37.940	4.228	170	64	USP18	exonic	synonymous_SNV
GBM_A_T7--3	22:18650764	T	A	275	0.404	164	36.927	6.090	111	36.847	4.877	153	105	USP18	exonic	synonymous_SNV
GBM_A_T7--4	22:18650764	T	A	331	0.302	231	36.519	5.921	100	37.750	5.302	211	96	USP18	exonic	synonymous_SNV
GBM_A_T7--GL	22:18650764	T	NA	260	0	260	38.969	2.688	0	0	0	258	0	USP18	exonic	synonymous_SNV
GBM_A_T7--1	2:238296060	C	T	30	0.367	19	36.158	4.549	11	35.182	4.665	18	10	COL6A3	intronic	NA
GBM_A_T7--2	2:238296060	C	NA	18	0	18	37.444	3.698	0	0	0	17	0	COL6A3	intronic	NA
GBM_A_T7--3	2:238296060	C	T	28	0.500	14	38.143	2.770	14	37.929	4.599	14	13	COL6A3	intronic	NA
GBM_A_T7--4	2:238296060	C	T	23	0.304	16	37.062	3.316	7	38.429	2.573	16	7	COL6A3	intronic	NA
GBM_A_T7--GL	2:238296060	C	NA	34	0	34	38.735	2.885	0	0	0	33	0	COL6A3	intronic	NA
GBM_A_T7--1	2:60696056	T	NA	28	0	27	37.037	6.382	0	0	0	26	0	BCL11A	intronic	NA
GBM_A_T7--2	2:60696056	T	C	26	0.308	18	39.389	1.650	8	39.000	2.507	18	8	BCL11A	intronic	NA
GBM_A_T7--3	2:60696056	T	NA	15	0	15	34.600	7.827	0	0	0	13	0	BCL11A	intronic	NA
GBM_A_T7--4	2:60696056	T	NA	22	0	22	36.591	7.545	0	0	0	19	0	BCL11A	intronic	NA
GBM_A_T7--GL	2:60696056	T	NA	39	0	39	38.872	3.310	0	0	0	38	0	BCL11A	intronic	NA
GBM_A_T7--1	2:68615438	A	NA	68	0	48	19.542	11.530	0	0	0	14	0	PLEK	intronic	NA
GBM_A_T7--2	2:68615438	A	NA	79	0	72	26.083	8.985	0	0	0	31	0	PLEK	intronic	NA
GBM_A_T7--3	2:68615438	A	G	108	0.037	103	25.369	8.170	4	21.250	11.615	37	2	PLEK	intronic	NA
GBM_A_T7--4	2:68615438	A	NA	111	0	104	26.067	8.532	0	0	0	49	0	PLEK	intronic	NA
GBM_A_T7--GL	2:68615438	A	NA	78	0	75	27.840	8.295	0	0	0	37	0	PLEK	intronic	NA
GBM_A_T7--1	2:95488817	G	T	252	0.329	169	36.473	6.506	83	38.000	6.905	155	77	ANKRD20A8P	ncRNA_exonic	NA
GBM_A_T7--2	2:95488817	G	T	180	0.228	139	37.129	6.836	41	38.024	6.605	126	39	ANKRD20A8P	ncRNA_exonic	NA
GBM_A_T7--3	2:95488817	G	T	200	0.305	139	38.403	4.891	61	39.459	2.981	136	60	ANKRD20A8P	ncRNA_exonic	NA
GBM_A_T7--4	2:95488817	G	T	246	0.264	181	38.293	3.900	65	39.369	1.949	172	65	ANKRD20A8P	ncRNA_exonic	NA
GBM_A_T7--GL	2:95488817	G	NA	266	0	265	38.838	4.157	0	0	0	256	0	ANKRD20A8P	ncRNA_exonic	NA
GBM_A_T7--1	3:109128741	T	A	78	0.295	55	36.036	5.139	23	36.217	7.839	51	22	LINC01205	upstream	NA
GBM_A_T7--2	3:109128741	T	A	62	0.355	39	36.231	6.507	22	39.091	2.524	36	22	LINC01205	upstream	NA
GBM_A_T7--3	3:109128741	T	A	60	0.283	43	34.721	7.519	17	37.059	4.905	39	15	LINC01205	upstream	NA
GBM_A_T7--4	3:109128741	T	A	85	0.294	60	35.600	6.500	25	37.520	4.273	55	22	LINC01205	upstream	NA
GBM_A_T7--GL	3:109128741	T	NA	95	0	94	36.628	4.923	0	0	0	87	0	LINC01205	upstream	NA
GBM_A_T7--1	3:112188783	C	NA	28	0	28	37.643	6.326	0	0	0	27	0	BTLA	intronic	NA
GBM_A_T7--2	3:112188783	C	T	44	0.341	29	37.517	3.031	15	36.000	5.182	29	13	BTLA	intronic	NA
GBM_A_T7--3	3:112188783	C	NA	52	0	52	37.423	6.153	0	0	0	50	0	BTLA	intronic	NA
GBM_A_T7--4	3:112188783	C	NA	54	0	54	36.981	5.019	0	0	0	53	0	BTLA	intronic	NA
GBM_A_T7--GL	3:112188783	C	NA	37	0	37	37.459	5.718	0	0	0	36	0	BTLA	intronic	NA
GBM_A_T7--1	3:119327601	T	C	147	0.293	102	37.990	5.315	43	36.186	7.857	100	39	PLA1A	intronic	NA
GBM_A_T7--2	3:119327601	T	C	157	0.287	112	38.250	4.743	45	38.089	3.315	109	45	PLA1A	intronic	NA
GBM_A_T7--3	3:119327601	T	C	174	0.397	105	37.657	6.068	69	37.739	4.245	99	66	PLA1A	intronic	NA
GBM_A_T7--4	3:119327601	T	C	189	0.233	145	38.876	4.151	44	38.864	2.378	143	44	PLA1A	intronic	NA
GBM_A_T7--GL	3:119327601	T	NA	181	0	181	39.503	3.596	0	0	0	179	0	PLA1A	intronic	NA
GBM_A_T7--1	3:122427137	G	T	83	0.518	40	37.650	6.383	43	38.419	3.534	39	42	PARP14	intronic	NA
GBM_A_T7--2	3:122427137	G	T	73	0.315	50	38.820	5.847	23	38.870	3.167	49	23	PARP14	intronic	NA
GBM_A_T7--3	3:122427137	G	T	73	0.438	41	38.171	4.571	32	39.062	2.951	39	31	PARP14	intronic	NA
GBM_A_T7--4	3:122427137	G	T	63	0.365	40	39.750	1.410	23	39.565	2.233	40	23	PARP14	intronic	NA
GBM_A_T7--GL	3:122427137	G	NA	82	0	82	38.622	4.432	0	0	0	80	0	PARP14	intronic	NA
GBM_A_T7--1	3:12645699	G	A	117	0.009	115	32.757	8.838	1	30.000	0.000	96	1	RAF1	exonic	nonsynonymous_SNV
GBM_A_T7--2	3:12645699	G	NA	107	0	106	33.632	8.225	0	0	0	85	0	RAF1	exonic	nonsynonymous_SNV
GBM_A_T7--3	3:12645699	G	A	101	0.178	83	34.072	7.195	18	34.500	4.462	73	15	RAF1	exonic	nonsynonymous_SNV
GBM_A_T7--4	3:12645699	G	NA	131	0	130	33.231	8.702	0	0	0	106	0	RAF1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	3:12645699	G	NA	154	0	154	35.455	6.795	0	0	0	138	0	RAF1	exonic	nonsynonymous_SNV
GBM_A_T7--1	3:13975909	G	A	36	0.333	23	32.957	8.249	12	35.250	5.345	18	10	FGD5P1	ncRNA_exonic	NA
GBM_A_T7--2	3:13975909	G	NA	42	0	42	34.857	8.544	0	0	0	38	0	FGD5P1	ncRNA_exonic	NA
GBM_A_T7--3	3:13975909	G	A	48	0.479	25	34.880	7.839	23	36.000	3.606	22	22	FGD5P1	ncRNA_exonic	NA
GBM_A_T7--4	3:13975909	G	A	57	0.298	40	34.625	8.643	17	32.588	8.300	36	12	FGD5P1	ncRNA_exonic	NA
GBM_A_T7--GL	3:13975909	G	NA	60	0	60	36.450	5.973	0	0	0	58	0	FGD5P1	ncRNA_exonic	NA
GBM_A_T7--1	3:149488258	G	NA	69	0	69	36.058	7.364	0	0	0	63	0	ANKUB1	intronic	NA
GBM_A_T7--2	3:149488258	G	A	48	0.250	36	37.167	6.040	12	38.667	3.367	34	12	ANKUB1	intronic	NA
GBM_A_T7--3	3:149488258	G	NA	94	0	94	37.330	5.806	0	0	0	87	0	ANKUB1	intronic	NA
GBM_A_T7--4	3:149488258	G	NA	78	0	78	37.154	5.208	0	0	0	75	0	ANKUB1	intronic	NA
GBM_A_T7--GL	3:149488258	G	NA	62	0	62	38.452	4.991	0	0	0	60	0	ANKUB1	intronic	NA
GBM_A_T7--1	3:161047106	A	C	107	0.318	72	37.847	4.527	34	36.500	7.601	71	32	NMD3(dist=77311),SPTSSB(dist=15474)	intergenic	NA
GBM_A_T7--2	3:161047106	A	NA	93	0	93	38.075	5.345	0	0	0	90	0	NMD3(dist=77311),SPTSSB(dist=15474)	intergenic	NA
GBM_A_T7--3	3:161047106	A	C	115	0.487	59	37.746	5.779	56	38.196	3.012	57	55	NMD3(dist=77311),SPTSSB(dist=15474)	intergenic	NA
GBM_A_T7--4	3:161047106	A	C	112	0.250	84	38.560	2.490	28	38.036	3.480	84	27	NMD3(dist=77311),SPTSSB(dist=15474)	intergenic	NA
GBM_A_T7--GL	3:161047106	A	NA	131	0	131	39.053	2.516	0	0	0	130	0	NMD3(dist=77311),SPTSSB(dist=15474)	intergenic	NA
GBM_A_T7--1	3:31641959	A	G	144	0.465	77	38.377	4.193	67	39.254	2.344	74	66	STT3B	intronic	NA
GBM_A_T7--2	3:31641959	A	G	93	0.247	70	39.086	3.795	23	38.565	2.873	67	23	STT3B	intronic	NA
GBM_A_T7--3	3:31641959	A	G	101	0.406	60	37.900	7.311	41	37.951	6.641	58	39	STT3B	intronic	NA
GBM_A_T7--4	3:31641959	A	G	108	0.296	76	38.645	4.068	32	39.312	2.429	71	32	STT3B	intronic	NA
GBM_A_T7--GL	3:31641959	A	NA	134	0	134	39.604	3.813	0	0	0	133	0	STT3B	intronic	NA
GBM_A_T7--1	3:58135716	C	G	190	0.326	127	36.220	4.954	62	36.032	6.065	117	57	FLNB	exonic	nonsynonymous_SNV
GBM_A_T7--2	3:58135716	C	G	266	0.226	206	36.175	6.879	60	37.017	5.700	193	57	FLNB	exonic	nonsynonymous_SNV
GBM_A_T7--3	3:58135716	C	G	297	0.350	193	36.233	6.611	104	36.298	6.244	180	98	FLNB	exonic	nonsynonymous_SNV
GBM_A_T7--4	3:58135716	C	G	342	0.292	242	36.847	5.648	100	36.450	7.102	225	92	FLNB	exonic	nonsynonymous_SNV
GBM_A_T7--GL	3:58135716	C	NA	247	0	247	38.352	3.100	0	0	0	244	0	FLNB	exonic	nonsynonymous_SNV
GBM_A_T7--1	4:10445063	T	A	179	0.168	149	38.805	3.498	30	38.333	3.575	147	29	ZNF518B	exonic	nonsynonymous_SNV
GBM_A_T7--2	4:10445063	T	NA	200	0	198	38.152	3.458	0	0	0	192	0	ZNF518B	exonic	nonsynonymous_SNV
GBM_A_T7--3	4:10445063	T	A	223	0.058	210	38.586	3.548	13	39.385	2.293	205	13	ZNF518B	exonic	nonsynonymous_SNV
GBM_A_T7--4	4:10445063	T	A	265	0.132	230	37.809	5.364	35	38.600	3.525	222	34	ZNF518B	exonic	nonsynonymous_SNV
GBM_A_T7--GL	4:10445063	T	NA	233	0	233	39.013	2.800	0	0	0	229	0	ZNF518B	exonic	nonsynonymous_SNV
GBM_A_T7--1	4:139483075	A	C	100	0.310	69	37.087	5.352	31	35.548	5.971	66	29	LINC00499(dist=137577),CCRN4L(dist=453838)	intergenic	NA
GBM_A_T7--2	4:139483075	A	NA	77	0	77	35.351	7.143	0	0	0	69	0	LINC00499(dist=137577),CCRN4L(dist=453838)	intergenic	NA
GBM_A_T7--3	4:139483075	A	C	105	0.381	65	35.462	5.075	40	34.350	8.307	60	37	LINC00499(dist=137577),CCRN4L(dist=453838)	intergenic	NA
GBM_A_T7--4	4:139483075	A	C	100	0.370	63	35.921	4.573	37	35.324	6.408	59	35	LINC00499(dist=137577),CCRN4L(dist=453838)	intergenic	NA
GBM_A_T7--GL	4:139483075	A	NA	121	0	121	36.661	6.009	0	0	0	112	0	LINC00499(dist=137577),CCRN4L(dist=453838)	intergenic	NA
GBM_A_T7--1	4:155411228	G	A	25	0.320	17	35.824	4.531	8	35.875	2.475	15	8	DCHS2	exonic	nonsynonymous_SNV
GBM_A_T7--2	4:155411228	G	A	31	0.226	24	35.083	3.821	7	35.000	5.066	21	6	DCHS2	exonic	nonsynonymous_SNV
GBM_A_T7--3	4:155411228	G	A	41	0.463	22	33.045	9.152	19	34.000	8.524	18	17	DCHS2	exonic	nonsynonymous_SNV
GBM_A_T7--4	4:155411228	G	A	40	0.275	28	33.214	7.627	11	35.000	4.899	24	9	DCHS2	exonic	nonsynonymous_SNV
GBM_A_T7--GL	4:155411228	G	NA	38	0	38	35.421	8.487	0	0	0	35	0	DCHS2	exonic	nonsynonymous_SNV
GBM_A_T7--1	4:15733231	C	T	58	0.345	38	36.184	4.865	20	35.950	4.371	36	18	BST1	intronic	NA
GBM_A_T7--2	4:15733231	C	T	63	0.016	62	36.806	4.368	1	35.000	0.000	59	1	BST1	intronic	NA
GBM_A_T7--3	4:15733231	C	T	53	0.547	24	35.333	7.998	29	38.414	2.383	22	29	BST1	intronic	NA
GBM_A_T7--4	4:15733231	C	T	69	0.304	48	37.000	5.082	21	35.333	4.247	42	19	BST1	intronic	NA
GBM_A_T7--GL	4:15733231	C	NA	62	0	62	37.065	4.148	0	0	0	60	0	BST1	intronic	NA
GBM_A_T7--1	4:174537095	C	T	101	0.446	56	37.518	4.943	45	37.022	4.669	54	42	HAND2-AS1(dist=74114),FBXO8(dist=620715)	intergenic	NA
GBM_A_T7--2	4:174537095	C	NA	86	0	86	37.453	6.102	0	0	0	81	0	HAND2-AS1(dist=74114),FBXO8(dist=620715)	intergenic	NA
GBM_A_T7--3	4:174537095	C	T	69	0.449	37	37.649	6.779	31	34.226	7.792	35	26	HAND2-AS1(dist=74114),FBXO8(dist=620715)	intergenic	NA
GBM_A_T7--4	4:174537095	C	T	91	0.363	58	37.741	5.881	33	34.636	6.968	53	28	HAND2-AS1(dist=74114),FBXO8(dist=620715)	intergenic	NA
GBM_A_T7--GL	4:174537095	C	NA	105	0	105	38.876	3.173	0	0	0	104	0	HAND2-AS1(dist=74114),FBXO8(dist=620715)	intergenic	NA
GBM_A_T7--1	4:187516856	C	A	204	0.387	125	37.928	4.654	79	38.570	3.153	118	77	FAT1	exonic	synonymous_SNV
GBM_A_T7--2	4:187516856	C	A	302	0.255	225	37.084	6.371	77	36.675	7.237	212	71	FAT1	exonic	synonymous_SNV
GBM_A_T7--3	4:187516856	C	A	382	0.435	216	37.718	5.351	166	37.440	5.436	209	159	FAT1	exonic	synonymous_SNV
GBM_A_T7--4	4:187516856	C	A	423	0.307	293	38.270	3.977	130	37.385	4.459	288	121	FAT1	exonic	synonymous_SNV
GBM_A_T7--GL	4:187516856	C	NA	278	0	277	38.964	3.446	0	0	0	273	0	FAT1	exonic	synonymous_SNV
GBM_A_T7--1	5:147692956	A	G	154	0.370	97	38.227	5.151	57	39.123	4.347	94	55	SPINK7	exonic	synonymous_SNV
GBM_A_T7--2	5:147692956	A	G	168	0.268	123	39.114	3.718	45	39.222	2.295	118	45	SPINK7	exonic	synonymous_SNV
GBM_A_T7--3	5:147692956	A	G	169	0.426	97	39.093	3.742	72	39.264	2.926	95	71	SPINK7	exonic	synonymous_SNV
GBM_A_T7--4	5:147692956	A	G	179	0.279	129	38.419	5.688	50	39.280	2.893	124	50	SPINK7	exonic	synonymous_SNV
GBM_A_T7--GL	5:147692956	A	NA	197	0	197	39.756	2.282	0	0	0	195	0	SPINK7	exonic	synonymous_SNV
GBM_A_T7--1	5:149497105	G	NA	21	0	21	23.524	14.313	0	0	0	10	0	PDGFRB	intronic	NA
GBM_A_T7--2	5:149497105	G	NA	36	0	35	28.200	10.423	0	0	0	23	0	PDGFRB	intronic	NA
GBM_A_T7--3	5:149497105	G	A	28	0.071	26	32.654	10.579	2	22.500	14.849	22	1	PDGFRB	intronic	NA
GBM_A_T7--4	5:149497105	G	A	17	0.176	14	30.000	14.310	3	38.333	2.082	11	3	PDGFRB	intronic	NA
GBM_A_T7--GL	5:149497105	G	NA	41	0	41	31.537	8.732	0	0	0	31	0	PDGFRB	intronic	NA
GBM_A_T7--1	5:160111873	T	C	168	0.315	115	36.461	5.822	53	34.774	8.639	108	48	ATP10B	intronic	NA
GBM_A_T7--2	5:160111873	T	NA	198	0	197	36.472	5.618	0	0	0	184	0	ATP10B	intronic	NA
GBM_A_T7--3	5:160111873	T	C	180	0.100	162	36.994	6.352	18	35.500	5.458	152	17	ATP10B	intronic	NA
GBM_A_T7--4	5:160111873	T	C	210	0.214	165	36.545	5.807	45	36.533	4.906	152	38	ATP10B	intronic	NA
GBM_A_T7--GL	5:160111873	T	NA	199	0	199	38.658	3.456	0	0	0	194	0	ATP10B	intronic	NA
GBM_A_T7--1	5:180687399	A	C	152	0.336	100	36.790	4.781	51	38.137	3.779	93	50	TRIM52	exonic	nonsynonymous_SNV
GBM_A_T7--2	5:180687399	A	C	284	0.324	192	37.521	4.710	92	36.576	6.360	185	87	TRIM52	exonic	nonsynonymous_SNV
GBM_A_T7--3	5:180687399	A	C	345	0.452	188	37.250	6.041	156	37.179	5.702	178	144	TRIM52	exonic	nonsynonymous_SNV
GBM_A_T7--4	5:180687399	A	C	348	0.250	260	37.335	4.908	87	36.230	6.720	252	80	TRIM52	exonic	nonsynonymous_SNV
GBM_A_T7--GL	5:180687399	A	NA	227	0	227	38.722	5.124	0	0	0	223	0	TRIM52	exonic	nonsynonymous_SNV
GBM_A_T7--1	5:180687407	T	G	152	0.309	104	37.885	4.338	47	38.660	3.583	101	45	TRIM52	exonic	synonymous_SNV
GBM_A_T7--2	5:180687407	T	G	286	0.315	196	38.184	3.718	90	37.878	5.438	189	86	TRIM52	exonic	synonymous_SNV
GBM_A_T7--3	5:180687407	T	G	354	0.466	189	37.360	5.428	165	37.964	5.013	179	157	TRIM52	exonic	synonymous_SNV
GBM_A_T7--4	5:180687407	T	G	345	0.255	257	38.128	3.740	88	37.432	5.439	252	84	TRIM52	exonic	synonymous_SNV
GBM_A_T7--GL	5:180687407	T	NA	235	0	234	38.611	5.047	0	0	0	228	0	TRIM52	exonic	synonymous_SNV
GBM_A_T7--1	5:34824590	T	C	104	0.337	68	38.206	4.013	35	36.086	7.648	65	32	RAI14	exonic	synonymous_SNV
GBM_A_T7--2	5:34824590	T	C	60	0.017	59	38.237	4.091	1	41.000	0.000	57	1	RAI14	exonic	synonymous_SNV
GBM_A_T7--3	5:34824590	T	C	47	0.468	25	35.480	9.644	22	37.318	4.179	22	21	RAI14	exonic	synonymous_SNV
GBM_A_T7--4	5:34824590	T	C	74	0.324	50	38.460	3.138	24	37.833	4.622	49	23	RAI14	exonic	synonymous_SNV
GBM_A_T7--GL	5:34824590	T	NA	110	0	110	38.936	3.446	0	0	0	108	0	RAI14	exonic	synonymous_SNV
GBM_A_T7--1	6:118791763	C	G	203	0.320	138	38.500	4.579	65	38.877	4.425	133	64	CEP85L	exonic	nonsynonymous_SNV
GBM_A_T7--2	6:118791763	C	NA	127	0	126	38.579	4.136	0	0	0	123	0	CEP85L	exonic	nonsynonymous_SNV
GBM_A_T7--3	6:118791763	C	G	133	0.286	95	38.263	3.832	38	39.474	2.202	91	38	CEP85L	exonic	nonsynonymous_SNV
GBM_A_T7--4	6:118791763	C	G	187	0.283	134	38.731	2.656	53	37.943	4.857	133	51	CEP85L	exonic	nonsynonymous_SNV
GBM_A_T7--GL	6:118791763	C	NA	179	0	179	39.480	3.269	0	0	0	177	0	CEP85L	exonic	nonsynonymous_SNV
GBM_A_T7--1	6:29604082	C	NA	192	0	191	36.942	5.135	0	0	0	179	0	GABBR1(dist=3120),MOG(dist=20676)	intergenic	NA
GBM_A_T7--2	6:29604082	C	T	285	0.298	199	36.764	5.699	85	36.129	6.688	191	80	GABBR1(dist=3120),MOG(dist=20676)	intergenic	NA
GBM_A_T7--3	6:29604082	C	T	313	0.013	308	36.468	5.547	4	39.750	1.500	282	4	GABBR1(dist=3120),MOG(dist=20676)	intergenic	NA
GBM_A_T7--4	6:29604082	C	NA	342	0	341	36.774	4.937	0	0	0	322	0	GABBR1(dist=3120),MOG(dist=20676)	intergenic	NA
GBM_A_T7--GL	6:29604082	C	NA	256	0	255	38.482	3.727	0	0	0	253	0	GABBR1(dist=3120),MOG(dist=20676)	intergenic	NA
GBM_A_T7--1	6:30882839	T	NA	148	0	147	35.721	7.307	0	0	0	132	0	VARS2	intronic	NA
GBM_A_T7--2	6:30882839	T	NA	147	0	147	36.531	6.321	0	0	0	137	0	VARS2	intronic	NA
GBM_A_T7--3	6:30882839	T	C	133	0.165	111	36.333	6.396	22	37.818	3.500	103	21	VARS2	intronic	NA
GBM_A_T7--4	6:30882839	T	C	148	0.007	147	37.197	5.570	1	40.000	0.000	140	1	VARS2	intronic	NA
GBM_A_T7--GL	6:30882839	T	NA	140	0	140	37.593	5.495	0	0	0	135	0	VARS2	intronic	NA
GBM_A_T7--1	6:32013892	C	T	50	0.320	34	34.059	10.705	16	34.375	5.439	30	13	TNXB	intronic	NA
GBM_A_T7--2	6:32013892	C	T	27	0.370	17	37.588	3.318	10	37.700	2.584	16	10	TNXB	intronic	NA
GBM_A_T7--3	6:32013892	C	T	19	0.316	13	34.231	10.426	6	38.833	2.137	12	6	TNXB	intronic	NA
GBM_A_T7--4	6:32013892	C	T	39	0.410	23	36.957	2.602	16	35.812	4.520	23	15	TNXB	intronic	NA
GBM_A_T7--GL	6:32013892	C	NA	47	0	47	37.681	4.677	0	0	0	45	0	TNXB	intronic	NA
GBM_A_T7--1	6:49045318	G	T	63	0.413	36	36.972	4.687	26	28.885	11.086	35	20	PTCHD4(dist=1008893),MUT(dist=352755)	intergenic	NA
GBM_A_T7--2	6:49045318	G	T	44	0.273	32	37.344	5.944	12	36.333	2.535	31	12	PTCHD4(dist=1008893),MUT(dist=352755)	intergenic	NA
GBM_A_T7--3	6:49045318	G	T	56	0.446	31	38.677	2.833	25	35.000	4.655	30	24	PTCHD4(dist=1008893),MUT(dist=352755)	intergenic	NA
GBM_A_T7--4	6:49045318	G	T	52	0.269	38	37.105	4.422	14	36.857	3.302	36	14	PTCHD4(dist=1008893),MUT(dist=352755)	intergenic	NA
GBM_A_T7--GL	6:49045318	G	NA	71	0	71	38.225	2.727	0	0	0	70	0	PTCHD4(dist=1008893),MUT(dist=352755)	intergenic	NA
GBM_A_T7--1	6:55198483	T	A	89	0.326	60	38.483	3.133	29	36.655	5.023	59	28	GFRAL	intronic	NA
GBM_A_T7--2	6:55198483	T	A	95	0.337	62	38.952	2.848	32	38.031	3.569	61	31	GFRAL	intronic	NA
GBM_A_T7--3	6:55198483	T	A	100	0.440	56	38.571	2.716	44	37.864	3.789	56	42	GFRAL	intronic	NA
GBM_A_T7--4	6:55198483	T	A	100	0.360	64	37.891	4.098	36	38.583	3.148	63	35	GFRAL	intronic	NA
GBM_A_T7--GL	6:55198483	T	NA	92	0	92	38.554	3.139	0	0	0	91	0	GFRAL	intronic	NA
GBM_A_T7--1	7:121513489	C	G	50	0.360	32	34.219	10.041	18	35.389	8.332	28	15	PTPRZ1	UTR5	NA
GBM_A_T7--2	7:121513489	C	G	23	0.478	12	34.583	4.776	11	33.364	11.698	11	9	PTPRZ1	UTR5	NA
GBM_A_T7--3	7:121513489	C	G	42	0.571	18	33.778	11.770	24	35.625	5.404	16	21	PTPRZ1	UTR5	NA
GBM_A_T7--4	7:121513489	C	G	40	0.275	29	36.897	4.362	11	37.364	2.501	28	11	PTPRZ1	UTR5	NA
GBM_A_T7--GL	7:121513489	C	NA	37	0	37	37.378	4.474	0	0	0	35	0	PTPRZ1	UTR5	NA
GBM_A_T7--1	7:141782423	A	NA	80	0	80	36.138	7.473	0	0	0	72	0	MGAM	intronic	NA
GBM_A_T7--2	7:141782423	A	G	68	0.338	45	37.622	4.682	23	38.348	4.438	41	21	MGAM	intronic	NA
GBM_A_T7--3	7:141782423	A	NA	85	0	85	37.600	5.621	0	0	0	81	0	MGAM	intronic	NA
GBM_A_T7--4	7:141782423	A	NA	89	0	89	37.764	5.099	0	0	0	85	0	MGAM	intronic	NA
GBM_A_T7--GL	7:141782423	A	NA	95	0	95	38.800	4.254	0	0	0	93	0	MGAM	intronic	NA
GBM_A_T7--1	7:45851867	A	G	51	0.392	31	32.323	7.489	20	33.050	7.824	25	19	SEPT7P2(dist=43250),IGFBP1(dist=76092)	intergenic	NA
GBM_A_T7--2	7:45851867	A	NA	63	0	63	33.778	9.276	0	0	0	54	0	SEPT7P2(dist=43250),IGFBP1(dist=76092)	intergenic	NA
GBM_A_T7--3	7:45851867	A	G	41	0.366	26	34.115	5.347	15	37.400	2.995	24	15	SEPT7P2(dist=43250),IGFBP1(dist=76092)	intergenic	NA
GBM_A_T7--4	7:45851867	A	G	42	0.262	31	32.323	8.901	11	36.182	4.215	26	10	SEPT7P2(dist=43250),IGFBP1(dist=76092)	intergenic	NA
GBM_A_T7--GL	7:45851867	A	NA	45	0	45	36.622	3.179	0	0	0	43	0	SEPT7P2(dist=43250),IGFBP1(dist=76092)	intergenic	NA
GBM_A_T7--1	7:50513387	T	C	231	0.390	141	38.291	4.200	90	38.156	5.094	138	86	FIGNL1	exonic	synonymous_SNV
GBM_A_T7--2	7:50513387	T	C	231	0.312	159	37.811	5.486	72	38.194	3.355	152	72	FIGNL1	exonic	synonymous_SNV
GBM_A_T7--3	7:50513387	T	C	263	0.426	149	37.711	6.506	112	37.339	5.119	141	105	FIGNL1	exonic	synonymous_SNV
GBM_A_T7--4	7:50513387	T	C	289	0.322	194	37.814	5.612	93	38.226	3.859	182	91	FIGNL1	exonic	synonymous_SNV
GBM_A_T7--GL	7:50513387	T	NA	227	0	227	38.573	3.975	0	0	0	220	0	FIGNL1	exonic	synonymous_SNV
GBM_A_T7--1	7:63033755	T	C	59	0.153	50	34.140	8.109	9	36.222	5.215	43	8	LOC100287834(dist=174336),MIR4283-1(dist=47713)	intergenic	NA
GBM_A_T7--2	7:63033755	T	C	48	0.146	40	35.550	6.373	7	29.714	13.086	36	5	LOC100287834(dist=174336),MIR4283-1(dist=47713)	intergenic	NA
GBM_A_T7--3	7:63033755	T	C	41	0.293	29	34.724	7.270	12	36.917	3.777	27	11	LOC100287834(dist=174336),MIR4283-1(dist=47713)	intergenic	NA
GBM_A_T7--4	7:63033755	T	C	51	0.098	46	34.609	7.594	5	35.000	3.808	40	5	LOC100287834(dist=174336),MIR4283-1(dist=47713)	intergenic	NA
GBM_A_T7--GL	7:63033755	T	NA	70	0	70	37.214	4.079	0	0	0	66	0	LOC100287834(dist=174336),MIR4283-1(dist=47713)	intergenic	NA
GBM_A_T7--1	7:87797757	A	C	126	0.405	75	38.360	3.319	51	37.745	4.113	74	49	ADAM22	intronic	NA
GBM_A_T7--2	7:87797757	A	C	59	0.254	44	38.477	2.663	15	37.667	3.994	44	14	ADAM22	intronic	NA
GBM_A_T7--3	7:87797757	A	C	61	0.410	36	39.417	1.948	25	37.680	4.171	36	24	ADAM22	intronic	NA
GBM_A_T7--4	7:87797757	A	C	73	0.452	40	37.950	3.486	33	38.485	3.144	40	32	ADAM22	intronic	NA
GBM_A_T7--GL	7:87797757	A	NA	108	0	108	39.269	2.501	0	0	0	108	0	ADAM22	intronic	NA
GBM_A_T7--1	8:110457191	T	NA	215	0	213	38.535	3.148	0	0	0	210	0	PKHD1L1	exonic	nonsynonymous_SNV
GBM_A_T7--2	8:110457191	T	C	390	0.277	281	37.801	5.642	108	38.472	3.086	269	106	PKHD1L1	exonic	nonsynonymous_SNV
GBM_A_T7--3	8:110457191	T	NA	431	0	430	37.828	4.950	0	0	0	406	0	PKHD1L1	exonic	nonsynonymous_SNV
GBM_A_T7--4	8:110457191	T	NA	529	0	529	37.605	4.886	0	0	0	507	0	PKHD1L1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	8:110457191	T	NA	305	0	305	39.167	3.286	0	0	0	302	0	PKHD1L1	exonic	nonsynonymous_SNV
GBM_A_T7--1	8:12237498	G	A	325	0.258	240	36.617	4.195	84	35.988	5.043	229	77	FAM66A	ncRNA_intronic	NA
GBM_A_T7--2	8:12237498	G	A	974	0.185	791	35.499	5.936	180	36.672	5.765	732	171	FAM66A	ncRNA_intronic	NA
GBM_A_T7--3	8:12237498	G	A	943	0.280	676	35.430	6.228	264	35.269	7.108	626	243	FAM66A	ncRNA_intronic	NA
GBM_A_T7--4	8:12237498	G	A	1132	0.223	879	35.205	6.392	252	35.508	6.426	794	231	FAM66A	ncRNA_intronic	NA
GBM_A_T7--GL	8:12237498	G	NA	507	0	507	37.361	3.586	0	0	0	500	0	FAM66A	ncRNA_intronic	NA
GBM_A_T7--1	8:145640321	C	NA	92	0	91	32.538	9.859	0	0	0	77	0	SLC39A4	intronic	NA
GBM_A_T7--2	8:145640321	C	T	93	0.237	71	35.127	5.971	22	32.091	10.645	66	18	SLC39A4	intronic	NA
GBM_A_T7--3	8:145640321	C	NA	91	0	91	34.527	9.052	0	0	0	82	0	SLC39A4	intronic	NA
GBM_A_T7--4	8:145640321	C	NA	98	0	98	34.592	7.848	0	0	0	85	0	SLC39A4	intronic	NA
GBM_A_T7--GL	8:145640321	C	NA	88	0	88	36.477	5.446	0	0	0	84	0	SLC39A4	intronic	NA
GBM_A_T7--1	8:17611815	C	NA	261	0	260	38.219	3.965	0	0	0	253	0	MTUS1	exonic	nonsynonymous_SNV
GBM_A_T7--2	8:17611815	C	T	353	0.334	231	37.892	4.691	118	37.856	3.776	223	114	MTUS1	exonic	nonsynonymous_SNV
GBM_A_T7--3	8:17611815	C	NA	453	0	452	37.858	4.321	0	0	0	431	0	MTUS1	exonic	nonsynonymous_SNV
GBM_A_T7--4	8:17611815	C	NA	464	0	464	37.782	4.886	0	0	0	445	0	MTUS1	exonic	nonsynonymous_SNV
GBM_A_T7--GL	8:17611815	C	NA	294	0	294	39.248	3.290	0	0	0	290	0	MTUS1	exonic	nonsynonymous_SNV
GBM_A_T7--1	8:23709991	G	A	84	0.321	57	36.912	6.780	27	38.704	2.959	51	26	STC1	intronic	NA
GBM_A_T7--2	8:23709991	G	A	93	0.011	91	37.418	5.168	1	41.000	0.000	86	1	STC1	intronic	NA
GBM_A_T7--3	8:23709991	G	A	96	0.344	61	35.902	6.675	33	37.727	4.318	56	31	STC1	intronic	NA
GBM_A_T7--4	8:23709991	G	A	89	0.348	58	37.379	6.833	31	37.516	4.073	54	29	STC1	intronic	NA
GBM_A_T7--GL	8:23709991	G	NA	96	0	96	38.229	4.811	0	0	0	92	0	STC1	intronic	NA
GBM_A_T7--1	8:91967741	A	NA	164	0	163	36.356	8.416	0	0	0	149	0	NECAB1	UTR3	NA
GBM_A_T7--2	8:91967741	A	NA	104	0	103	38.233	4.925	0	0	0	98	0	NECAB1	UTR3	NA
GBM_A_T7--3	8:91967741	A	G	106	0.217	83	38.675	3.472	23	38.391	6.913	80	22	NECAB1	UTR3	NA
GBM_A_T7--4	8:91967741	A	NA	126	0	126	38.151	5.781	0	0	0	121	0	NECAB1	UTR3	NA
GBM_A_T7--GL	8:91967741	A	NA	112	0	112	39.384	2.832	0	0	0	111	0	NECAB1	UTR3	NA
GBM_A_T7--1	9:131755524	A	T	141	0.376	87	31.862	10.369	53	35.377	5.418	65	48	NUP188	exonic	nonsynonymous_SNV
GBM_A_T7--2	9:131755524	A	NA	157	0	157	35.669	6.243	0	0	0	142	0	NUP188	exonic	nonsynonymous_SNV
GBM_A_T7--3	9:131755524	A	T	170	0.347	111	34.441	7.165	59	36.559	6.616	95	55	NUP188	exonic	nonsynonymous_SNV
GBM_A_T7--4	9:131755524	A	T	193	0.342	127	34.622	6.945	66	36.970	4.889	109	61	NUP188	exonic	nonsynonymous_SNV
GBM_A_T7--GL	9:131755524	A	NA	189	0	189	35.630	7.144	0	0	0	168	0	NUP188	exonic	nonsynonymous_SNV
GBM_A_T7--1	9:71986494	A	G	126	0.429	72	37.444	3.968	54	35.111	8.384	65	47	FAM189A2	exonic	nonsynonymous_SNV
GBM_A_T7--2	9:71986494	A	G	205	0.005	203	36.970	6.060	1	41.000	0.000	188	1	FAM189A2	exonic	nonsynonymous_SNV
GBM_A_T7--3	9:71986494	A	G	210	0.300	146	37.144	6.322	63	36.540	6.382	132	56	FAM189A2	exonic	nonsynonymous_SNV
GBM_A_T7--4	9:71986494	A	G	226	0.235	171	36.269	7.635	53	37.226	6.952	158	50	FAM189A2	exonic	nonsynonymous_SNV
GBM_A_T7--GL	9:71986494	A	NA	213	0	213	38.873	3.591	0	0	0	208	0	FAM189A2	exonic	nonsynonymous_SNV
GBM_A_T7--1	GL000211.1:103688	G	T	27	0.074	25	31.720	8.003	2	35.000	5.657	21	2	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T7--2	GL000211.1:103688	G	T	29	0.310	20	33.900	8.379	9	34.000	1.225	18	9	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T7--3	GL000211.1:103688	G	T	39	0.385	24	33.333	8.952	15	35.133	2.875	21	15	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T7--4	GL000211.1:103688	G	T	30	0.533	14	31.357	12.720	16	34.688	6.343	12	13	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_A_T7--GL	GL000211.1:103688	G	NA	55	0	55	35.436	3.207	0	0	0	54	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--10	chr10:104233726	C	NA	26	0	26	34.692	6.516	0	0	0	24	0	TMEM180	exonic	synonymous_SNV
GBM_P_T1--11	chr10:104233726	C	NA	43	0	43	35.163	3.585	0	0	0	40	0	TMEM180	exonic	synonymous_SNV
GBM_P_T1--5	chr10:104233726	C	NA	30	0	30	36.200	3.458	0	0	0	29	0	TMEM180	exonic	synonymous_SNV
GBM_P_T1--7	chr10:104233726	C	A	21	0.190	17	36.176	3.432	4	34.500	5.000	16	3	TMEM180	exonic	synonymous_SNV
GBM_P_T1--9	chr10:104233726	C	NA	40	0	40	35.850	4.276	0	0	0	38	0	TMEM180	exonic	synonymous_SNV
GBM_P_T1--GL	chr10:104233726	C	NA	36	0	36	34.972	3.917	0	0	0	34	0	TMEM180	exonic	synonymous_SNV
GBM_P_T1--10	chr10:112360315	G	T	47	0.085	43	35.628	6.040	4	33.000	0.000	40	4	SMC3	intronic	NA
GBM_P_T1--11	chr10:112360315	G	T	53	0.094	48	35.208	5.802	5	33.000	0.000	43	5	SMC3	intronic	NA
GBM_P_T1--5	chr10:112360315	G	T	38	0.079	35	34.400	5.054	3	24.000	15.588	30	2	SMC3	intronic	NA
GBM_P_T1--7	chr10:112360315	G	T	15	0.267	11	33.909	7.273	4	33.000	0.000	9	4	SMC3	intronic	NA
GBM_P_T1--9	chr10:112360315	G	T	21	0.048	19	30.526	10.844	1	37.000	0.000	14	1	SMC3	intronic	NA
GBM_P_T1--GL	chr10:112360315	G	NA	37	0	37	33.892	7.827	0	0	0	31	0	SMC3	intronic	NA
GBM_P_T1--10	chr10:135020487	C	NA	42	0	42	37.000	4.102	0	0	0	41	0	KNDC1	intronic	NA
GBM_P_T1--11	chr10:135020487	C	NA	51	0	50	37.400	3.037	0	0	0	48	0	KNDC1	intronic	NA
GBM_P_T1--5	chr10:135020487	C	NA	36	0	36	37.167	3.256	0	0	0	35	0	KNDC1	intronic	NA
GBM_P_T1--7	chr10:135020487	C	A	23	0.174	19	38.474	2.342	4	36.750	2.872	19	4	KNDC1	intronic	NA
GBM_P_T1--9	chr10:135020487	C	NA	30	0	30	38.100	2.249	0	0	0	30	0	KNDC1	intronic	NA
GBM_P_T1--GL	chr10:135020487	C	NA	54	0	54	36.685	3.244	0	0	0	51	0	KNDC1	intronic	NA
GBM_P_T1--10	chr10:135076589	C	NA	26	0	25	36.160	4.375	0	0	0	23	0	ADAM8	UTR3	NA
GBM_P_T1--11	chr10:135076589	C	NA	33	0	33	34.909	7.367	0	0	0	29	0	ADAM8	UTR3	NA
GBM_P_T1--5	chr10:135076589	C	NA	34	0	34	37.882	2.114	0	0	0	34	0	ADAM8	UTR3	NA
GBM_P_T1--7	chr10:135076589	C	A	26	0.154	22	36.955	2.278	4	36.750	2.872	22	4	ADAM8	UTR3	NA
GBM_P_T1--9	chr10:135076589	C	NA	32	0	32	37.500	3.016	0	0	0	31	0	ADAM8	UTR3	NA
GBM_P_T1--GL	chr10:135076589	C	NA	50	0	50	35.560	5.407	0	0	0	46	0	ADAM8	UTR3	NA
GBM_P_T1--10	chr10:4879770	C	NA	49	0	49	35.796	3.873	0	0	0	45	0	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr10:4879770	C	NA	31	0	31	35.742	6.361	0	0	0	29	0	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr10:4879770	C	NA	34	0	34	37.853	2.298	0	0	0	34	0	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr10:4879770	C	NA	23	0	23	37.304	2.687	0	0	0	23	0	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr10:4879770	C	A	26	0.154	22	36.273	4.131	4	35.000	2.309	19	4	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr10:4879770	C	NA	48	0	48	36.312	5.451	0	0	0	43	0	AKR1E2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr10:61835118	C	NA	70	0	70	36.043	5.457	0	0	0	64	0	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr10:61835118	C	NA	72	0	72	36.403	5.191	0	0	0	66	0	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr10:61835118	C	NA	43	0	43	37.116	4.176	0	0	0	42	0	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr10:61835118	C	A	28	0.214	22	36.909	4.011	6	37.333	2.582	20	6	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr10:61835118	C	NA	53	0	53	37.377	3.212	0	0	0	51	0	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr10:61835118	C	NA	55	0	55	37.691	2.292	0	0	0	55	0	ANK3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr10:72291067	C	NA	34	0	34	36.794	2.293	0	0	0	34	0	PALD1	exonic	synonymous_SNV
GBM_P_T1--11	chr10:72291067	C	NA	29	0	29	33.517	5.241	0	0	0	23	0	PALD1	exonic	synonymous_SNV
GBM_P_T1--5	chr10:72291067	C	NA	29	0	29	36.000	4.743	0	0	0	28	0	PALD1	exonic	synonymous_SNV
GBM_P_T1--7	chr10:72291067	C	A	18	0.167	15	35.400	4.171	3	38.000	1.732	14	3	PALD1	exonic	synonymous_SNV
GBM_P_T1--9	chr10:72291067	C	NA	32	0	32	34.406	5.054	0	0	0	26	0	PALD1	exonic	synonymous_SNV
GBM_P_T1--GL	chr10:72291067	C	NA	44	0	44	35.364	5.058	0	0	0	39	0	PALD1	exonic	synonymous_SNV
GBM_P_T1--10	chr10:75874190	T	C	42	0.190	34	37.324	2.070	8	35.000	2.138	34	8	VCL	intronic	NA
GBM_P_T1--11	chr10:75874190	T	NA	39	0	39	34.256	6.025	0	0	0	34	0	VCL	intronic	NA
GBM_P_T1--5	chr10:75874190	T	C	34	0.088	31	36.161	4.067	3	27.000	10.392	29	2	VCL	intronic	NA
GBM_P_T1--7	chr10:75874190	T	NA	18	0	18	36.944	2.532	0	0	0	18	0	VCL	intronic	NA
GBM_P_T1--9	chr10:75874190	T	NA	43	0	43	35.465	4.020	0	0	0	40	0	VCL	intronic	NA
GBM_P_T1--GL	chr10:75874190	T	NA	45	0	44	35.909	4.744	0	0	0	40	0	VCL	intronic	NA
GBM_P_T1--10	chr10:93244929	C	NA	31	0	31	36.032	6.529	0	0	0	28	0	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--11	chr10:93244929	C	NA	32	0	32	36.406	4.339	0	0	0	30	0	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--5	chr10:93244929	C	NA	35	0	35	37.743	3.600	0	0	0	34	0	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--7	chr10:93244929	C	A	13	0.231	10	39.000	2.309	3	36.667	3.512	10	3	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--9	chr10:93244929	C	NA	23	0	23	37.652	3.039	0	0	0	23	0	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--GL	chr10:93244929	C	NA	38	0	38	37.632	2.972	0	0	0	37	0	LOC100188947	ncRNA_intronic	NA
GBM_P_T1--10	chr11:102567207	T	NA	56	0	56	36.089	3.554	0	0	0	53	0	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr11:102567207	T	NA	44	0	44	36.682	3.353	0	0	0	41	0	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr11:102567207	T	NA	35	0	34	35.265	6.379	0	0	0	31	0	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr11:102567207	T	A	14	0.214	11	33.727	7.643	3	35.667	2.309	8	3	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr11:102567207	T	NA	27	0	27	36.593	3.331	0	0	0	26	0	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr11:102567207	T	NA	46	0	46	34.826	5.638	0	0	0	42	0	MMP27	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr11:113073053	G	T	41	0.073	38	36.421	5.102	3	34.333	2.309	33	3	NCAM1	intronic	NA
GBM_P_T1--11	chr11:113073053	G	T	42	0.167	34	37.382	3.668	7	35.286	2.138	33	7	NCAM1	intronic	NA
GBM_P_T1--5	chr11:113073053	G	T	30	0.100	27	36.852	3.769	3	35.667	2.309	26	3	NCAM1	intronic	NA
GBM_P_T1--7	chr11:113073053	G	NA	21	0	20	36.400	4.160	0	0	0	18	0	NCAM1	intronic	NA
GBM_P_T1--9	chr11:113073053	G	T	35	0.143	30	37.667	3.845	5	35.400	2.191	29	5	NCAM1	intronic	NA
GBM_P_T1--GL	chr11:113073053	G	NA	33	0	33	35.727	5.779	0	0	0	29	0	NCAM1	intronic	NA
GBM_P_T1--10	chr11:123811004	C	NA	50	0	50	36.460	2.573	0	0	0	50	0	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr11:123811004	C	NA	41	0	41	35.756	4.821	0	0	0	38	0	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr11:123811004	C	NA	31	0	31	36.903	2.300	0	0	0	31	0	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr11:123811004	C	A	18	0.222	14	36.786	3.683	4	38.500	1.732	13	4	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr11:123811004	C	NA	34	0	34	36.618	5.105	0	0	0	32	0	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr11:123811004	C	NA	51	0	51	35.196	6.309	0	0	0	45	0	OR4D5	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:143378242	T	C	72	0.125	63	35.857	5.855	9	36.778	4.353	59	8	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--11	chr1:143378242	T	C	61	0.197	49	36.082	4.453	12	37.167	3.512	47	11	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--5	chr1:143378242	T	C	62	0.210	49	37.020	2.933	13	37.769	2.555	48	13	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--7	chr1:143378242	T	C	38	0.079	34	36.294	4.027	3	37.667	4.041	32	3	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--9	chr1:143378242	T	C	70	0.129	61	36.820	4.284	9	37.556	2.242	57	9	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--GL	chr1:143378242	T	NA	84	0	84	35.988	4.120	0	0	0	77	0	ANKRD20A12P(dist=664637),MIR6077-1(dist=294679)	intergenic	NA
GBM_P_T1--10	chr11:46780588	C	NA	19	0	19	36.263	4.026	0	0	0	17	0	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr11:46780588	C	NA	19	0	19	36.000	4.655	0	0	0	18	0	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr11:46780588	C	NA	14	0	14	36.214	4.677	0	0	0	13	0	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr11:46780588	C	NA	11	0	11	34.727	8.296	0	0	0	9	0	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr11:46780588	C	A	16	0.188	13	37.846	2.075	3	36.667	3.512	13	3	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr11:46780588	C	NA	39	0	39	36.769	3.731	0	0	0	36	0	CKAP5	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr11:49884024	G	T	44	0.227	34	36.971	3.468	10	35.800	3.882	32	9	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--11	chr11:49884024	G	T	52	0.173	43	36.535	4.306	9	36.556	1.333	41	9	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--5	chr11:49884024	G	T	36	0.222	28	36.429	3.891	8	34.125	7.954	27	7	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--7	chr11:49884024	G	T	27	0.259	20	38.200	2.587	7	37.571	3.309	20	7	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--9	chr11:49884024	G	T	34	0.118	30	37.200	3.960	4	35.250	5.679	29	3	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--GL	chr11:49884024	G	NA	57	0	57	36.772	3.882	0	0	0	56	0	LOC440040(dist=52055),OR4C13(dist=89919)	intergenic	NA
GBM_P_T1--10	chr1:151144129	C	NA	26	0	26	36.269	5.539	0	0	0	23	0	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:151144129	C	NA	39	0	39	36.821	4.071	0	0	0	37	0	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:151144129	C	A	25	0.160	21	37.714	3.319	4	36.500	4.041	20	4	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:151144129	C	NA	22	0	22	36.591	5.679	0	0	0	20	0	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:151144129	C	NA	40	0	40	36.625	3.224	0	0	0	38	0	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:151144129	C	NA	51	0	50	35.720	4.824	0	0	0	43	0	TMOD4	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:151752594	C	NA	23	0	23	35.783	4.522	0	0	0	21	0	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:151752594	C	A	25	0.040	24	36.208	4.232	1	37.000	0.000	22	1	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:151752594	C	NA	24	0	24	34.875	5.169	0	0	0	22	0	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:151752594	C	A	21	0.190	17	37.824	1.912	4	37.750	1.500	17	4	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:151752594	C	NA	26	0	26	37.962	2.068	0	0	0	26	0	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:151752594	C	NA	35	0	35	36.143	5.632	0	0	0	34	0	TDRKH	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr11:5593198	T	C	53	0.208	42	36.071	4.661	11	36.364	2.942	40	11	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--11	chr11:5593198	T	C	31	0.387	19	36.895	2.726	12	36.750	2.598	19	12	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--5	chr11:5593198	T	C	41	0.585	17	37.765	2.306	24	38.375	1.527	17	24	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--7	chr11:5593198	T	C	16	0.438	9	36.222	5.826	7	36.000	4.123	8	6	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--9	chr11:5593198	T	C	25	0.800	5	38.800	1.643	20	38.000	1.892	5	20	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--GL	chr11:5593198	T	NA	82	0	82	37.317	3.154	0	0	0	80	0	OR52H1(dist=26445),OR52B6(dist=8909)	intergenic	NA
GBM_P_T1--10	chr1:165173141	C	NA	26	0	26	37.885	2.535	0	0	0	26	0	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:165173141	C	NA	29	0	29	37.138	4.904	0	0	0	28	0	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:165173141	C	NA	16	0	16	36.938	4.434	0	0	0	15	0	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:165173141	C	A	14	0.214	11	36.818	3.894	3	36.667	3.512	10	3	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:165173141	C	NA	23	0	23	38.391	2.872	0	0	0	22	0	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:165173141	C	NA	36	0	36	38.528	1.978	0	0	0	36	0	LMX1A	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:16558576	C	NA	21	0	21	34.476	3.894	0	0	0	19	0	RSG1	exonic	synonymous_SNV
GBM_P_T1--11	chr1:16558576	C	NA	21	0	21	33.571	6.454	0	0	0	19	0	RSG1	exonic	synonymous_SNV
GBM_P_T1--5	chr1:16558576	C	NA	30	0	30	36.200	1.627	0	0	0	30	0	RSG1	exonic	synonymous_SNV
GBM_P_T1--7	chr1:16558576	C	NA	11	0	11	31.636	8.698	0	0	0	10	0	RSG1	exonic	synonymous_SNV
GBM_P_T1--9	chr1:16558576	C	A	25	0.200	20	36.400	1.465	5	35.400	2.191	20	5	RSG1	exonic	synonymous_SNV
GBM_P_T1--GL	chr1:16558576	C	NA	35	0	35	34.800	3.270	0	0	0	33	0	RSG1	exonic	synonymous_SNV
GBM_P_T1--10	chr11:7693769	C	NA	42	0	42	35.143	4.867	0	0	0	37	0	CYB5R2	intronic	NA
GBM_P_T1--11	chr11:7693769	C	NA	46	0	46	35.739	4.155	0	0	0	42	0	CYB5R2	intronic	NA
GBM_P_T1--5	chr11:7693769	C	A	29	0.138	25	34.920	6.377	4	37.750	1.500	23	4	CYB5R2	intronic	NA
GBM_P_T1--7	chr11:7693769	C	NA	31	0	31	37.129	2.907	0	0	0	30	0	CYB5R2	intronic	NA
GBM_P_T1--9	chr11:7693769	C	NA	33	0	33	37.121	2.815	0	0	0	32	0	CYB5R2	intronic	NA
GBM_P_T1--GL	chr11:7693769	C	NA	46	0	46	34.826	6.587	0	0	0	41	0	CYB5R2	intronic	NA
GBM_P_T1--10	chr1:19584955	C	NA	41	0	41	33.537	6.660	0	0	0	33	0	MRTO4	intronic	NA
GBM_P_T1--11	chr1:19584955	C	NA	53	0	52	35.519	4.800	0	0	0	50	0	MRTO4	intronic	NA
GBM_P_T1--5	chr1:19584955	C	NA	49	0	49	35.020	6.156	0	0	0	44	0	MRTO4	intronic	NA
GBM_P_T1--7	chr1:19584955	C	A	26	0.154	22	36.818	3.096	4	36.750	2.872	21	4	MRTO4	intronic	NA
GBM_P_T1--9	chr1:19584955	C	A	51	0.020	50	35.080	4.275	1	33.000	0.000	44	1	MRTO4	intronic	NA
GBM_P_T1--GL	chr1:19584955	C	NA	53	0	53	35.189	5.874	0	0	0	49	0	MRTO4	intronic	NA
GBM_P_T1--10	chr12:109684039	G	A	43	0.302	30	36.633	3.157	13	35.923	4.734	29	12	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr12:109684039	G	A	47	0.426	27	36.370	2.498	20	36.200	4.112	27	19	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr12:109684039	G	A	34	0.618	13	37.077	2.216	21	37.762	2.143	13	21	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr12:109684039	G	A	29	0.379	18	37.333	0.970	11	38.909	1.514	18	11	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr12:109684039	G	A	38	0.658	13	36.462	2.696	25	36.200	3.227	13	24	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr12:109684039	G	NA	111	0	111	36.333	3.738	0	0	0	107	0	ACACB	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr12:109994453	T	A	98	0.531	39	36.333	4.451	52	33.865	6.231	37	42	MMAB	UTR3	NA
GBM_P_T1--11	chr12:109994453	T	A	101	0.020	52	35.558	6.375	2	35.000	2.828	49	2	MMAB	UTR3	NA
GBM_P_T1--5	chr12:109994453	T	A	93	0.022	55	34.836	6.699	2	27.500	7.778	48	1	MMAB	UTR3	NA
GBM_P_T1--7	chr12:109994453	T	NA	49	0	28	35.786	5.072	0	0	0	25	0	MMAB	UTR3	NA
GBM_P_T1--9	chr12:109994453	T	A	77	0.273	51	34.196	6.119	21	34.190	6.226	44	18	MMAB	UTR3	NA
GBM_P_T1--GL	chr12:109994453	T	NA	101	0	46	32.630	8.885	0	0	0	37	0	MMAB	UTR3	NA
GBM_P_T1--10	chr12:110765891	C	A	15	0.200	12	38.083	2.712	3	39.000	1.732	12	3	ATP2A2	intronic	NA
GBM_P_T1--11	chr12:110765891	C	NA	31	0	31	36.000	5.967	0	0	0	27	0	ATP2A2	intronic	NA
GBM_P_T1--5	chr12:110765891	C	NA	20	0	20	37.150	5.687	0	0	0	19	0	ATP2A2	intronic	NA
GBM_P_T1--7	chr12:110765891	C	NA	11	0	11	38.545	3.934	0	0	0	10	0	ATP2A2	intronic	NA
GBM_P_T1--9	chr12:110765891	C	NA	19	0	19	36.632	4.462	0	0	0	18	0	ATP2A2	intronic	NA
GBM_P_T1--GL	chr12:110765891	C	NA	41	0	41	37.537	2.637	0	0	0	41	0	ATP2A2	intronic	NA
GBM_P_T1--10	chr12:121469385	C	NA	50	0	50	35.300	3.754	0	0	0	47	0	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr12:121469385	C	NA	47	0	47	35.404	4.387	0	0	0	44	0	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr12:121469385	C	NA	46	0	46	37.587	2.655	0	0	0	46	0	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr12:121469385	C	A	36	0.139	31	36.226	3.792	5	37.600	1.342	30	5	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr12:121469385	C	NA	37	0	37	36.784	4.779	0	0	0	35	0	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr12:121469385	C	NA	61	0	61	35.344	3.987	0	0	0	55	0	OASL	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr12:16051024	A	T	55	0.036	52	37.423	3.140	2	37.000	0.000	49	2	STRAP	intronic	NA
GBM_P_T1--11	chr12:16051024	A	T	42	0.024	40	36.850	3.348	1	33.000	0.000	38	1	STRAP	intronic	NA
GBM_P_T1--5	chr12:16051024	A	NA	33	0	33	37.242	3.163	0	0	0	32	0	STRAP	intronic	NA
GBM_P_T1--7	chr12:16051024	A	T	19	0.316	13	39.000	2.121	6	37.333	2.582	13	6	STRAP	intronic	NA
GBM_P_T1--9	chr12:16051024	A	NA	32	0	31	38.097	2.006	0	0	0	31	0	STRAP	intronic	NA
GBM_P_T1--GL	chr12:16051024	A	NA	96	0	95	36.621	3.968	0	0	0	90	0	STRAP	intronic	NA
GBM_P_T1--10	chr12:23998907	C	NA	35	0	35	37.371	2.850	0	0	0	34	0	SOX5	intronic	NA
GBM_P_T1--11	chr12:23998907	C	NA	26	0	26	37.038	3.130	0	0	0	25	0	SOX5	intronic	NA
GBM_P_T1--5	chr12:23998907	C	A	29	0.034	28	36.643	6.684	1	33.000	0.000	26	1	SOX5	intronic	NA
GBM_P_T1--7	chr12:23998907	C	A	17	0.176	14	37.000	3.783	3	38.000	1.732	13	3	SOX5	intronic	NA
GBM_P_T1--9	chr12:23998907	C	NA	28	0	28	37.643	2.909	0	0	0	27	0	SOX5	intronic	NA
GBM_P_T1--GL	chr12:23998907	C	NA	55	0	55	37.473	2.937	0	0	0	53	0	SOX5	intronic	NA
GBM_P_T1--10	chr1:225341430	C	NA	77	0	77	38.325	2.830	0	0	0	76	0	DNAH14	intronic	NA
GBM_P_T1--11	chr1:225341430	C	NA	48	0	48	37.125	4.832	0	0	0	44	0	DNAH14	intronic	NA
GBM_P_T1--5	chr1:225341430	C	NA	41	0	41	39.171	1.595	0	0	0	41	0	DNAH14	intronic	NA
GBM_P_T1--7	chr1:225341430	C	A	27	0.148	23	38.739	2.200	4	38.500	1.732	23	4	DNAH14	intronic	NA
GBM_P_T1--9	chr1:225341430	C	A	54	0.037	52	38.096	2.724	2	38.500	2.121	51	2	DNAH14	intronic	NA
GBM_P_T1--GL	chr1:225341430	C	NA	50	0	49	36.510	5.339	0	0	0	43	0	DNAH14	intronic	NA
GBM_P_T1--10	chr1:233336042	C	A	46	0.065	43	36.000	5.606	3	37.667	4.041	41	3	PCNXL2	intronic	NA
GBM_P_T1--11	chr1:233336042	C	NA	30	0	30	37.067	4.378	0	0	0	29	0	PCNXL2	intronic	NA
GBM_P_T1--5	chr1:233336042	C	NA	24	0	24	38.625	1.527	0	0	0	24	0	PCNXL2	intronic	NA
GBM_P_T1--7	chr1:233336042	C	A	18	0.167	15	37.933	2.017	3	39.000	1.732	15	3	PCNXL2	intronic	NA
GBM_P_T1--9	chr1:233336042	C	NA	22	0	22	37.818	2.423	0	0	0	22	0	PCNXL2	intronic	NA
GBM_P_T1--GL	chr1:233336042	C	NA	45	0	44	36.227	6.198	0	0	0	40	0	PCNXL2	intronic	NA
GBM_P_T1--10	chr1:235955462	A	NA	76	0	75	36.560	2.672	0	0	0	72	0	LYST	intronic	NA
GBM_P_T1--11	chr1:235955462	A	T	90	0.133	78	35.487	4.186	12	35.500	4.338	73	10	LYST	intronic	NA
GBM_P_T1--5	chr1:235955462	A	NA	67	0	66	35.545	4.483	0	0	0	63	0	LYST	intronic	NA
GBM_P_T1--7	chr1:235955462	A	NA	54	0	53	36.679	2.277	0	0	0	52	0	LYST	intronic	NA
GBM_P_T1--9	chr1:235955462	A	T	68	0.103	61	36.164	3.023	7	35.714	2.752	57	7	LYST	intronic	NA
GBM_P_T1--GL	chr1:235955462	A	NA	99	0	99	35.697	4.730	0	0	0	91	0	LYST	intronic	NA
GBM_P_T1--10	chr12:57440817	C	T	299	0.258	221	36.186	4.244	77	36.740	3.837	210	75	MYO1A	intronic	NA
GBM_P_T1--11	chr12:57440817	C	T	327	0.333	218	36.560	3.241	109	37.284	3.475	213	105	MYO1A	intronic	NA
GBM_P_T1--5	chr12:57440817	C	T	345	0.441	191	36.984	2.971	152	37.408	3.391	186	150	MYO1A	intronic	NA
GBM_P_T1--7	chr12:57440817	C	T	212	0.264	153	37.275	2.599	56	37.250	3.082	149	54	MYO1A	intronic	NA
GBM_P_T1--9	chr12:57440817	C	T	334	0.365	212	36.995	3.327	122	37.402	2.445	205	120	MYO1A	intronic	NA
GBM_P_T1--GL	chr12:57440817	C	NA	201	0	201	36.114	4.434	0	0	0	193	0	MYO1A	intronic	NA
GBM_P_T1--10	chr1:26349364	A	NA	30	0	30	35.500	5.900	0	0	0	28	0	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:26349364	A	NA	39	0	39	36.077	5.710	0	0	0	37	0	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:26349364	A	NA	31	0	31	37.032	2.183	0	0	0	31	0	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:26349364	A	G	14	0.214	11	36.545	3.751	3	38.000	1.732	10	3	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:26349364	A	NA	25	0	25	36.080	4.192	0	0	0	23	0	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:26349364	A	NA	33	0	33	35.818	3.432	0	0	0	31	0	EXTL1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr12:9262584	C	A	61	0.016	60	34.850	6.178	1	37.000	0.000	52	1	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr12:9262584	C	A	43	0.023	42	35.071	4.501	1	40.000	0.000	39	1	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr12:9262584	C	NA	46	0	46	37.717	1.882	0	0	0	46	0	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr12:9262584	C	A	24	0.167	20	38.350	1.531	4	36.750	2.872	20	4	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr12:9262584	C	NA	45	0	45	37.089	3.096	0	0	0	44	0	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr12:9262584	C	NA	83	0	83	35.663	4.292	0	0	0	75	0	A2M	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr12:93155355	G	A	86	0.012	85	35.659	3.896	1	33.000	0.000	80	1	PLEKHG7	intronic	NA
GBM_P_T1--11	chr12:93155355	G	A	85	0.094	77	35.727	2.553	8	34.500	2.070	76	8	PLEKHG7	intronic	NA
GBM_P_T1--5	chr12:93155355	G	A	58	0.138	50	35.440	4.267	8	36.000	1.852	46	8	PLEKHG7	intronic	NA
GBM_P_T1--7	chr12:93155355	G	NA	47	0	46	35.630	3.447	0	0	0	43	0	PLEKHG7	intronic	NA
GBM_P_T1--9	chr12:93155355	G	A	74	0.270	54	36.481	3.284	20	35.400	2.010	51	20	PLEKHG7	intronic	NA
GBM_P_T1--GL	chr12:93155355	G	NA	45	0	45	35.489	3.565	0	0	0	42	0	PLEKHG7	intronic	NA
GBM_P_T1--10	chr13:24895566	T	C	127	0.126	110	36.945	3.293	16	37.438	3.245	104	16	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr13:24895566	T	C	112	0.134	97	37.392	3.318	15	35.800	4.601	92	13	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr13:24895566	T	C	97	0.155	82	37.646	2.782	15	35.933	4.758	79	14	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr13:24895566	T	C	58	0.103	52	38.077	2.440	6	38.000	1.549	52	6	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr13:24895566	T	C	94	0.202	75	37.560	4.476	19	36.316	7.782	73	18	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr13:24895566	T	NA	116	0	116	36.509	5.380	0	0	0	102	0	C1QTNF9	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr13:38933426	C	NA	58	0	58	36.690	3.197	0	0	0	55	0	UFM1	intronic	NA
GBM_P_T1--11	chr13:38933426	C	NA	40	0	40	36.425	3.974	0	0	0	37	0	UFM1	intronic	NA
GBM_P_T1--5	chr13:38933426	C	NA	39	0	39	37.333	2.698	0	0	0	38	0	UFM1	intronic	NA
GBM_P_T1--7	chr13:38933426	C	A	19	0.158	16	37.188	3.600	3	39.000	1.732	15	3	UFM1	intronic	NA
GBM_P_T1--9	chr13:38933426	C	NA	31	0	31	38.226	1.783	0	0	0	31	0	UFM1	intronic	NA
GBM_P_T1--GL	chr13:38933426	C	NA	43	0	43	35.930	6.660	0	0	0	38	0	UFM1	intronic	NA
GBM_P_T1--10	chr13:48893101	G	NA	34	0	34	35.676	5.730	0	0	0	33	0	RB1	intronic	NA
GBM_P_T1--11	chr13:48893101	G	NA	31	0	31	35.194	4.135	0	0	0	28	0	RB1	intronic	NA
GBM_P_T1--5	chr13:48893101	G	T	23	0.174	19	36.789	3.343	4	34.000	2.000	18	4	RB1	intronic	NA
GBM_P_T1--7	chr13:48893101	G	NA	18	0	18	38.056	2.338	0	0	0	18	0	RB1	intronic	NA
GBM_P_T1--9	chr13:48893101	G	NA	23	0	23	36.087	5.256	0	0	0	22	0	RB1	intronic	NA
GBM_P_T1--GL	chr13:48893101	G	NA	39	0	39	35.000	6.553	0	0	0	34	0	RB1	intronic	NA
GBM_P_T1--10	chr1:36644863	C	NA	51	0	51	32.039	8.131	0	0	0	37	0	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:36644863	C	NA	31	0	30	34.133	6.404	0	0	0	23	0	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:36644863	C	NA	40	0	40	32.450	8.488	0	0	0	30	0	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:36644863	C	A	25	0.160	21	35.000	7.369	4	39.250	1.500	19	4	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:36644863	C	NA	41	0	40	33.375	6.663	0	0	0	32	0	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:36644863	C	NA	46	0	45	32.867	7.357	0	0	0	35	0	MAP7D1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr13:73347846	C	NA	39	0	39	35.308	5.791	0	0	0	35	0	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr13:73347846	C	NA	52	0	52	37.000	3.254	0	0	0	50	0	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr13:73347846	C	A	27	0.148	23	36.870	2.685	4	36.750	2.872	23	4	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr13:73347846	C	NA	23	0	23	37.217	3.219	0	0	0	22	0	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr13:73347846	C	NA	51	0	51	36.902	4.473	0	0	0	49	0	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr13:73347846	C	NA	35	0	35	35.600	7.138	0	0	0	31	0	DIS3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:39799063	A	NA	39	0	23	32.391	10.883	0	0	0	17	0	MACF1	intronic	NA
GBM_P_T1--11	chr1:39799063	A	NA	39	0	38	31.000	12.346	0	0	0	26	0	MACF1	intronic	NA
GBM_P_T1--5	chr1:39799063	A	G	35	0.257	26	33.923	9.376	9	21.111	10.752	20	2	MACF1	intronic	NA
GBM_P_T1--7	chr1:39799063	A	G	19	0.211	15	32.400	10.689	4	20.250	12.093	9	1	MACF1	intronic	NA
GBM_P_T1--9	chr1:39799063	A	G	30	0.200	24	35.083	7.077	6	20.167	11.514	19	1	MACF1	intronic	NA
GBM_P_T1--GL	chr1:39799063	A	NA	44	0	43	30.512	12.205	0	0	0	29	0	MACF1	intronic	NA
GBM_P_T1--10	chr14:50641264	C	NA	61	0	61	35.820	5.328	0	0	0	57	0	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr14:50641264	C	NA	53	0	53	37.509	3.117	0	0	0	52	0	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr14:50641264	C	NA	35	0	35	37.457	2.883	0	0	0	34	0	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr14:50641264	C	A	19	0.211	15	37.267	2.187	4	37.750	1.500	15	4	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr14:50641264	C	NA	46	0	46	37.761	2.892	0	0	0	45	0	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr14:50641264	C	NA	33	0	33	37.818	2.663	0	0	0	33	0	SOS2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr14:65230456	C	NA	36	0	36	36.250	3.865	0	0	0	34	0	SPTB	intronic	NA
GBM_P_T1--11	chr14:65230456	C	NA	27	0	27	37.778	2.242	0	0	0	27	0	SPTB	intronic	NA
GBM_P_T1--5	chr14:65230456	C	NA	26	0	26	35.923	5.314	0	0	0	24	0	SPTB	intronic	NA
GBM_P_T1--7	chr14:65230456	C	NA	13	0	13	36.077	3.402	0	0	0	12	0	SPTB	intronic	NA
GBM_P_T1--9	chr14:65230456	C	A	24	0.167	20	36.350	5.556	4	34.000	2.000	19	4	SPTB	intronic	NA
GBM_P_T1--GL	chr14:65230456	C	NA	48	0	48	36.125	2.765	0	0	0	47	0	SPTB	intronic	NA
GBM_P_T1--10	chr14:69919952	C	NA	46	0	46	37.935	2.342	0	0	0	45	0	SLC39A9	intronic	NA
GBM_P_T1--11	chr14:69919952	C	NA	34	0	34	38.324	2.198	0	0	0	34	0	SLC39A9	intronic	NA
GBM_P_T1--5	chr14:69919952	C	NA	17	0	17	38.176	3.226	0	0	0	16	0	SLC39A9	intronic	NA
GBM_P_T1--7	chr14:69919952	C	NA	23	0	23	36.870	2.685	0	0	0	23	0	SLC39A9	intronic	NA
GBM_P_T1--9	chr14:69919952	C	A	27	0.148	23	38.696	1.521	4	38.500	1.732	23	4	SLC39A9	intronic	NA
GBM_P_T1--GL	chr14:69919952	C	NA	57	0	57	37.614	3.363	0	0	0	56	0	SLC39A9	intronic	NA
GBM_P_T1--10	chr14:99879378	C	NA	27	0	27	37.185	3.465	0	0	0	26	0	SETD3	exonic	synonymous_SNV
GBM_P_T1--11	chr14:99879378	C	NA	24	0	24	36.458	5.477	0	0	0	22	0	SETD3	exonic	synonymous_SNV
GBM_P_T1--5	chr14:99879378	C	NA	34	0	34	37.118	3.574	0	0	0	33	0	SETD3	exonic	synonymous_SNV
GBM_P_T1--7	chr14:99879378	C	NA	19	0	19	37.000	3.215	0	0	0	18	0	SETD3	exonic	synonymous_SNV
GBM_P_T1--9	chr14:99879378	C	A	18	0.167	15	38.800	1.521	3	37.667	4.041	15	3	SETD3	exonic	synonymous_SNV
GBM_P_T1--GL	chr14:99879378	C	NA	43	0	43	36.884	3.717	0	0	0	41	0	SETD3	exonic	synonymous_SNV
GBM_P_T1--10	chr1:50661394	C	NA	88	0	88	35.330	4.746	0	0	0	81	0	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:50661394	C	A	55	0.109	49	36.265	2.588	6	34.667	4.082	47	5	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:50661394	C	A	44	0.045	42	36.405	2.253	2	38.500	2.121	41	2	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:50661394	C	NA	43	0	43	36.279	3.788	0	0	0	42	0	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:50661394	C	A	54	0.315	37	37.027	2.115	17	35.588	3.203	36	16	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:50661394	C	NA	69	0	69	36.072	3.848	0	0	0	66	0	ELAVL4	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr15:23685009	T	NA	36	0	36	32.111	7.170	0	0	0	30	0	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--11	chr15:23685009	T	NA	52	0	52	31.750	8.510	0	0	0	39	0	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--5	chr15:23685009	T	NA	68	0	68	34.956	5.015	0	0	0	63	0	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--7	chr15:23685009	T	NA	40	0	40	35.350	4.638	0	0	0	37	0	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--9	chr15:23685009	T	A	79	0.139	68	34.706	5.306	11	34.273	6.589	62	10	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--GL	chr15:23685009	T	NA	68	0	68	32.897	5.885	0	0	0	53	0	GOLGA8S(dist=71538),MIR4508(dist=122200)	intergenic	NA
GBM_P_T1--10	chr15:90226847	C	NA	42	0	42	36.929	3.301	0	0	0	40	0	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr15:90226847	C	NA	23	0	23	37.087	2.314	0	0	0	23	0	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr15:90226847	C	NA	35	0	35	36.657	3.497	0	0	0	33	0	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr15:90226847	C	A	16	0.188	13	38.538	2.184	3	39.000	1.732	13	3	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr15:90226847	C	NA	27	0	27	36.778	3.105	0	0	0	26	0	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr15:90226847	C	NA	41	0	41	35.317	5.270	0	0	0	36	0	PEX11A	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:5969252	C	NA	77	0	77	35.662	3.976	0	0	0	71	0	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr1:5969252	C	A	50	0.020	49	34.184	4.680	1	37.000	0.000	44	1	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr1:5969252	C	NA	47	0	47	36.298	3.362	0	0	0	44	0	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr1:5969252	C	A	25	0.200	20	36.500	3.846	5	36.000	3.000	18	5	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr1:5969252	C	NA	49	0	48	36.146	3.781	0	0	0	47	0	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr1:5969252	C	NA	69	0	69	35.072	5.191	0	0	0	63	0	NPHP4	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr1:60314739	C	NA	61	0	61	37.787	2.770	0	0	0	60	0	HOOK1	intronic	NA
GBM_P_T1--11	chr1:60314739	C	NA	54	0	54	37.426	5.833	0	0	0	52	0	HOOK1	intronic	NA
GBM_P_T1--5	chr1:60314739	C	NA	24	0	24	38.000	2.396	0	0	0	24	0	HOOK1	intronic	NA
GBM_P_T1--7	chr1:60314739	C	A	27	0.148	23	38.913	1.857	4	38.500	1.732	23	4	HOOK1	intronic	NA
GBM_P_T1--9	chr1:60314739	C	NA	28	0	28	38.036	3.626	0	0	0	27	0	HOOK1	intronic	NA
GBM_P_T1--GL	chr1:60314739	C	NA	42	0	42	36.214	7.916	0	0	0	37	0	HOOK1	intronic	NA
GBM_P_T1--10	chr16:13010599	G	T	29	0.207	23	34.348	8.077	6	37.333	2.582	19	6	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr16:13010599	G	T	54	0.204	43	36.581	3.375	11	37.091	2.427	41	11	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr16:13010599	G	NA	38	0	38	37.658	3.224	0	0	0	37	0	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr16:13010599	G	T	15	0.267	11	37.182	3.683	4	36.000	6.164	10	3	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr16:13010599	G	T	37	0.351	24	37.750	3.138	13	35.615	6.627	23	12	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr16:13010599	G	NA	48	0	48	36.729	4.528	0	0	0	45	0	SHISA9	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr16:21689763	A	NA	37	0	37	35.946	5.286	0	0	0	33	0	OTOA	upstream	NA
GBM_P_T1--11	chr16:21689763	A	NA	39	0	39	36.667	2.004	0	0	0	39	0	OTOA	upstream	NA
GBM_P_T1--5	chr16:21689763	A	NA	35	0	35	37.029	4.422	0	0	0	34	0	OTOA	upstream	NA
GBM_P_T1--7	chr16:21689763	A	NA	18	0	18	36.278	3.121	0	0	0	17	0	OTOA	upstream	NA
GBM_P_T1--9	chr16:21689763	A	G	38	0.158	32	36.750	3.203	6	36.333	1.633	30	6	OTOA	upstream	NA
GBM_P_T1--GL	chr16:21689763	A	NA	39	0	39	36.179	3.531	0	0	0	37	0	OTOA	upstream	NA
GBM_P_T1--10	chr16:3594335	C	NA	40	0	40	35.400	3.733	0	0	0	37	0	NLRC3	intronic	NA
GBM_P_T1--11	chr16:3594335	C	A	27	0.148	23	34.652	4.108	4	37.500	3.317	19	4	NLRC3	intronic	NA
GBM_P_T1--5	chr16:3594335	C	NA	26	0	26	36.231	3.278	0	0	0	24	0	NLRC3	intronic	NA
GBM_P_T1--7	chr16:3594335	C	NA	24	0	24	37.042	1.601	0	0	0	24	0	NLRC3	intronic	NA
GBM_P_T1--9	chr16:3594335	C	NA	32	0	32	36.562	2.994	0	0	0	31	0	NLRC3	intronic	NA
GBM_P_T1--GL	chr16:3594335	C	NA	38	0	38	36.947	2.940	0	0	0	37	0	NLRC3	intronic	NA
GBM_P_T1--10	chr16:46421153	A	NA	10	0	10	37.800	4.050	0	0	0	9	0	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--11	chr16:46421153	A	NA	28	0	28	37.036	3.012	0	0	0	27	0	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--5	chr16:46421153	A	NA	34	0	34	37.971	3.196	0	0	0	33	0	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--7	chr16:46421153	A	G	24	0.250	18	37.833	2.618	6	39.500	1.225	18	6	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--9	chr16:46421153	A	G	51	0.039	49	37.082	3.558	2	31.000	12.728	47	1	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--GL	chr16:46421153	A	NA	38	0	37	37.135	2.417	0	0	0	37	0	NONE(dist=NONE),ANKRD26P1(dist=82096)	intergenic	NA
GBM_P_T1--10	chr16:71961525	C	NA	48	0	48	37.875	3.071	0	0	0	47	0	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr16:71961525	C	NA	39	0	39	36.359	6.289	0	0	0	36	0	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr16:71961525	C	NA	35	0	35	37.343	3.369	0	0	0	34	0	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr16:71961525	C	A	24	0.167	20	37.550	4.136	4	37.750	1.500	19	4	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr16:71961525	C	NA	56	0	55	37.873	2.625	0	0	0	54	0	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr16:71961525	C	NA	52	0	52	37.538	3.375	0	0	0	50	0	IST1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr16:74566090	A	NA	25	0	22	37.773	3.463	0	0	0	21	0	GLG1	intronic	NA
GBM_P_T1--11	chr16:74566090	A	NA	50	0	50	37.600	2.213	0	0	0	50	0	GLG1	intronic	NA
GBM_P_T1--5	chr16:74566090	A	NA	34	0	34	37.941	2.322	0	0	0	34	0	GLG1	intronic	NA
GBM_P_T1--7	chr16:74566090	A	T	32	0.406	19	38.263	1.522	13	35.462	7.007	19	11	GLG1	intronic	NA
GBM_P_T1--9	chr16:74566090	A	T	30	0.133	26	37.962	2.068	4	36.000	2.000	26	4	GLG1	intronic	NA
GBM_P_T1--GL	chr16:74566090	A	NA	44	0	43	36.419	3.923	0	0	0	41	0	GLG1	intronic	NA
GBM_P_T1--10	chr16:89653068	C	NA	25	0	25	34.320	3.945	0	0	0	22	0	CPNE7	intronic	NA
GBM_P_T1--11	chr16:89653068	C	NA	13	0	13	35.000	3.055	0	0	0	12	0	CPNE7	intronic	NA
GBM_P_T1--5	chr16:89653068	C	A	16	0.188	13	35.923	2.900	3	35.667	2.309	12	3	CPNE7	intronic	NA
GBM_P_T1--7	chr16:89653068	C	NA	13	0	13	35.308	3.038	0	0	0	12	0	CPNE7	intronic	NA
GBM_P_T1--9	chr16:89653068	C	NA	25	0	25	35.880	1.833	0	0	0	25	0	CPNE7	intronic	NA
GBM_P_T1--GL	chr16:89653068	C	NA	33	0	33	34.970	3.226	0	0	0	30	0	CPNE7	intronic	NA
GBM_P_T1--10	chr17:12899792	C	NA	32	0	32	35.219	4.233	0	0	0	28	0	ELAC2	intronic	NA
GBM_P_T1--11	chr17:12899792	C	NA	37	0	37	34.054	6.948	0	0	0	32	0	ELAC2	intronic	NA
GBM_P_T1--5	chr17:12899792	C	A	38	0.026	37	36.486	3.330	1	37.000	0.000	36	1	ELAC2	intronic	NA
GBM_P_T1--7	chr17:12899792	C	NA	18	0	18	37.278	1.565	0	0	0	18	0	ELAC2	intronic	NA
GBM_P_T1--9	chr17:12899792	C	A	35	0.143	30	36.333	4.245	5	36.200	5.357	28	4	ELAC2	intronic	NA
GBM_P_T1--GL	chr17:12899792	C	NA	44	0	44	35.250	4.047	0	0	0	39	0	ELAC2	intronic	NA
GBM_P_T1--10	chr17:17722921	C	NA	14	0	14	34.429	3.631	0	0	0	12	0	SREBF1	exonic	synonymous_SNV
GBM_P_T1--11	chr17:17722921	C	NA	36	0	36	35.472	7.101	0	0	0	33	0	SREBF1	exonic	synonymous_SNV
GBM_P_T1--5	chr17:17722921	C	A	26	0.154	22	35.045	7.332	4	36.000	2.000	19	4	SREBF1	exonic	synonymous_SNV
GBM_P_T1--7	chr17:17722921	C	NA	23	0	23	36.652	3.128	0	0	0	22	0	SREBF1	exonic	synonymous_SNV
GBM_P_T1--9	chr17:17722921	C	NA	24	0	24	36.083	3.694	0	0	0	22	0	SREBF1	exonic	synonymous_SNV
GBM_P_T1--GL	chr17:17722921	C	NA	37	0	37	36.324	2.839	0	0	0	36	0	SREBF1	exonic	synonymous_SNV
GBM_P_T1--10	chr17:18063380	C	NA	41	0	41	37.122	2.795	0	0	0	40	0	MYO15A	intronic	NA
GBM_P_T1--11	chr17:18063380	C	NA	35	0	35	36.486	3.013	0	0	0	33	0	MYO15A	intronic	NA
GBM_P_T1--5	chr17:18063380	C	NA	64	0	64	37.125	2.837	0	0	0	62	0	MYO15A	intronic	NA
GBM_P_T1--7	chr17:18063380	C	A	28	0.143	24	36.750	3.300	4	37.500	3.317	23	4	MYO15A	intronic	NA
GBM_P_T1--9	chr17:18063380	C	NA	44	0	44	36.159	5.502	0	0	0	40	0	MYO15A	intronic	NA
GBM_P_T1--GL	chr17:18063380	C	NA	66	0	66	36.439	4.229	0	0	0	61	0	MYO15A	intronic	NA
GBM_P_T1--10	chr17:27009750	C	NA	27	0	27	35.481	5.487	0	0	0	23	0	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:27009750	C	NA	24	0	24	35.167	5.662	0	0	0	21	0	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:27009750	C	NA	14	0	14	36.929	4.763	0	0	0	13	0	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:27009750	C	A	14	0.214	11	37.727	2.149	3	38.000	1.732	11	3	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:27009750	C	NA	39	0	39	36.256	5.364	0	0	0	36	0	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:27009750	C	NA	35	0	35	36.943	4.665	0	0	0	34	0	SUPT6H	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr17:27064863	G	A	32	0.062	30	34.400	4.391	2	26.000	15.556	26	1	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:27064863	G	NA	40	0	37	34.000	8.554	0	0	0	31	0	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:27064863	G	NA	42	0	39	34.308	7.575	0	0	0	34	0	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:27064863	G	A	25	0.240	19	32.316	9.753	6	26.333	11.272	15	3	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:27064863	G	NA	39	0	38	35.974	6.566	0	0	0	34	0	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:27064863	G	NA	56	0	55	33.091	7.823	0	0	0	44	0	NEK8	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr17:3819415	C	NA	31	0	31	34.290	5.832	0	0	0	27	0	P2RX1	exonic	synonymous_SNV
GBM_P_T1--11	chr17:3819415	C	NA	41	0	41	36.073	4.967	0	0	0	37	0	P2RX1	exonic	synonymous_SNV
GBM_P_T1--5	chr17:3819415	C	NA	33	0	33	37.303	2.899	0	0	0	32	0	P2RX1	exonic	synonymous_SNV
GBM_P_T1--7	chr17:3819415	C	A	19	0.158	16	37.625	2.306	3	39.000	1.732	16	3	P2RX1	exonic	synonymous_SNV
GBM_P_T1--9	chr17:3819415	C	NA	36	0	36	36.972	3.368	0	0	0	34	0	P2RX1	exonic	synonymous_SNV
GBM_P_T1--GL	chr17:3819415	C	NA	66	0	66	35.091	4.973	0	0	0	59	0	P2RX1	exonic	synonymous_SNV
GBM_P_T1--10	chr17:3945764	T	NA	40	0	40	36.125	5.814	0	0	0	37	0	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:3945764	T	NA	42	0	41	33.171	7.057	0	0	0	31	0	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:3945764	T	NA	37	0	37	37.189	3.099	0	0	0	36	0	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:3945764	T	A	36	0.139	31	36.935	3.356	5	37.400	2.881	29	5	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:3945764	T	NA	28	0	28	36.286	4.026	0	0	0	26	0	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:3945764	T	NA	53	0	53	36.094	3.686	0	0	0	50	0	ZZEF1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr17:39925152	C	A	24	0.167	20	37.300	2.296	4	37.500	3.317	20	4	JUP	intronic	NA
GBM_P_T1--11	chr17:39925152	C	NA	16	0	16	35.562	4.016	0	0	0	14	0	JUP	intronic	NA
GBM_P_T1--5	chr17:39925152	C	A	22	0.045	21	37.619	3.074	1	40.000	0.000	20	1	JUP	intronic	NA
GBM_P_T1--7	chr17:39925152	C	NA	12	0	12	37.583	2.575	0	0	0	12	0	JUP	intronic	NA
GBM_P_T1--9	chr17:39925152	C	NA	16	0	16	36.750	2.569	0	0	0	16	0	JUP	intronic	NA
GBM_P_T1--GL	chr17:39925152	C	NA	36	0	36	37.889	2.265	0	0	0	36	0	JUP	intronic	NA
GBM_P_T1--10	chr17:41352256	C	NA	30	0	30	36.167	6.508	0	0	0	28	0	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:41352256	C	NA	38	0	38	36.132	5.414	0	0	0	36	0	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:41352256	C	NA	22	0	22	36.727	3.990	0	0	0	21	0	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:41352256	C	A	26	0.154	22	38.227	2.506	4	35.750	3.403	22	4	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:41352256	C	NA	35	0	35	36.514	5.918	0	0	0	34	0	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:41352256	C	NA	48	0	48	36.229	3.302	0	0	0	46	0	NBR1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr17:55187507	C	NA	33	0	33	35.030	3.340	0	0	0	31	0	AKAP1	exonic	synonymous_SNV
GBM_P_T1--11	chr17:55187507	C	NA	46	0	46	36.348	3.093	0	0	0	44	0	AKAP1	exonic	synonymous_SNV
GBM_P_T1--5	chr17:55187507	C	A	21	0.190	17	35.706	5.807	4	35.000	2.309	16	4	AKAP1	exonic	synonymous_SNV
GBM_P_T1--7	chr17:55187507	C	NA	24	0	24	37.417	2.827	0	0	0	23	0	AKAP1	exonic	synonymous_SNV
GBM_P_T1--9	chr17:55187507	C	NA	33	0	33	37.788	2.302	0	0	0	33	0	AKAP1	exonic	synonymous_SNV
GBM_P_T1--GL	chr17:55187507	C	NA	56	0	56	36.482	2.608	0	0	0	56	0	AKAP1	exonic	synonymous_SNV
GBM_P_T1--10	chr17:61559789	C	NA	34	0	34	36.176	5.686	0	0	0	31	0	ACE	intronic	NA
GBM_P_T1--11	chr17:61559789	C	NA	36	0	36	35.278	4.450	0	0	0	31	0	ACE	intronic	NA
GBM_P_T1--5	chr17:61559789	C	A	40	0.025	39	37.308	3.188	1	37.000	0.000	38	1	ACE	intronic	NA
GBM_P_T1--7	chr17:61559789	C	A	22	0.182	18	34.111	8.116	4	37.000	0.000	15	4	ACE	intronic	NA
GBM_P_T1--9	chr17:61559789	C	NA	43	0	43	36.814	4.107	0	0	0	38	0	ACE	intronic	NA
GBM_P_T1--GL	chr17:61559789	C	NA	40	0	40	36.125	4.071	0	0	0	37	0	ACE	intronic	NA
GBM_P_T1--10	chr17:65103397	G	C	130	0.169	108	36.824	3.852	22	37.045	7.188	102	21	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:65103397	G	C	78	0.192	63	37.667	2.646	15	36.067	8.565	63	14	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:65103397	G	C	68	0.015	67	37.597	3.469	1	37.000	0.000	64	1	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:65103397	G	C	51	0.235	39	37.513	2.543	12	36.417	4.144	39	11	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:65103397	G	C	68	0.279	49	37.898	2.852	19	37.579	3.656	48	18	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:65103397	G	NA	105	0	105	36.314	5.239	0	0	0	95	0	HELZ	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr17:74077842	C	NA	22	0	22	36.136	3.270	0	0	0	21	0	EXOC7	UTR3	NA
GBM_P_T1--11	chr17:74077842	C	NA	41	0	41	35.634	5.190	0	0	0	36	0	EXOC7	UTR3	NA
GBM_P_T1--5	chr17:74077842	C	NA	24	0	24	36.708	2.881	0	0	0	23	0	EXOC7	UTR3	NA
GBM_P_T1--7	chr17:74077842	C	A	14	0.214	11	37.909	2.773	3	37.000	0.000	11	3	EXOC7	UTR3	NA
GBM_P_T1--9	chr17:74077842	C	NA	32	0	32	35.500	6.080	0	0	0	31	0	EXOC7	UTR3	NA
GBM_P_T1--GL	chr17:74077842	C	NA	37	0	37	35.378	4.669	0	0	0	34	0	EXOC7	UTR3	NA
GBM_P_T1--10	chr17:80021315	G	A	27	0.148	23	37.000	2.763	4	36.750	2.872	23	4	DUS1L	intronic	NA
GBM_P_T1--11	chr17:80021315	G	NA	57	0	57	36.351	3.497	0	0	0	55	0	DUS1L	intronic	NA
GBM_P_T1--5	chr17:80021315	G	NA	46	0	46	36.674	3.876	0	0	0	43	0	DUS1L	intronic	NA
GBM_P_T1--7	chr17:80021315	G	NA	35	0	35	36.371	4.453	0	0	0	32	0	DUS1L	intronic	NA
GBM_P_T1--9	chr17:80021315	G	NA	49	0	49	35.837	4.351	0	0	0	46	0	DUS1L	intronic	NA
GBM_P_T1--GL	chr17:80021315	G	NA	38	0	38	35.184	5.457	0	0	0	33	0	DUS1L	intronic	NA
GBM_P_T1--10	chr17:8093292	C	T	67	0.478	35	35.486	3.156	32	28.156	9.548	34	17	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr17:8093292	C	T	103	0.816	19	35.158	3.655	84	30.500	8.104	18	53	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr17:8093292	C	T	84	0.786	17	36.235	1.985	66	32.136	7.622	17	52	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr17:8093292	C	T	56	0.839	9	33.889	5.134	47	31.702	6.915	8	34	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr17:8093292	C	T	82	0.829	14	35.143	4.092	68	31.632	6.793	12	47	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr17:8093292	C	NA	82	0	81	33.926	4.144	0	0	0	70	0	C17orf59	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr18:21529572	G	NA	35	0	35	36.200	5.195	0	0	0	31	0	LAMA3	intronic	NA
GBM_P_T1--11	chr18:21529572	G	NA	30	0	30	36.233	6.606	0	0	0	28	0	LAMA3	intronic	NA
GBM_P_T1--5	chr18:21529572	G	NA	23	0	23	37.783	3.204	0	0	0	22	0	LAMA3	intronic	NA
GBM_P_T1--7	chr18:21529572	G	T	16	0.188	13	38.000	2.614	3	36.667	3.512	13	3	LAMA3	intronic	NA
GBM_P_T1--9	chr18:21529572	G	NA	21	0	21	39.000	1.449	0	0	0	21	0	LAMA3	intronic	NA
GBM_P_T1--GL	chr18:21529572	G	NA	36	0	36	36.472	4.638	0	0	0	34	0	LAMA3	intronic	NA
GBM_P_T1--10	chr19:10218424	C	NA	39	0	39	35.538	3.042	0	0	0	38	0	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--11	chr19:10218424	C	NA	67	0	67	36.418	3.381	0	0	0	64	0	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--5	chr19:10218424	C	NA	50	0	50	37.380	2.364	0	0	0	50	0	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--7	chr19:10218424	C	A	28	0.143	24	36.500	3.148	4	37.000	0.000	23	4	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--9	chr19:10218424	C	NA	53	0	53	37.019	2.445	0	0	0	53	0	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--GL	chr19:10218424	C	NA	75	0	75	36.560	3.453	0	0	0	71	0	PPAN,PPAN-P2RY11	intronic	NA
GBM_P_T1--10	chr19:16337313	C	A	27	0.148	23	33.391	8.338	4	36.750	2.872	18	4	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr19:16337313	C	NA	39	0	39	34.974	4.215	0	0	0	37	0	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr19:16337313	C	NA	29	0	29	35.517	4.733	0	0	0	27	0	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr19:16337313	C	NA	31	0	31	35.710	4.076	0	0	0	28	0	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr19:16337313	C	NA	29	0	29	34.276	7.709	0	0	0	25	0	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr19:16337313	C	NA	60	0	60	34.850	5.004	0	0	0	53	0	AP1M1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr19:16339049	C	NA	30	0	30	34.733	3.331	0	0	0	28	0	AP1M1	intronic	NA
GBM_P_T1--11	chr19:16339049	C	NA	33	0	33	34.061	5.505	0	0	0	28	0	AP1M1	intronic	NA
GBM_P_T1--5	chr19:16339049	C	NA	29	0	29	36.483	3.280	0	0	0	28	0	AP1M1	intronic	NA
GBM_P_T1--7	chr19:16339049	C	A	21	0.190	17	34.824	6.673	4	36.000	2.000	15	4	AP1M1	intronic	NA
GBM_P_T1--9	chr19:16339049	C	NA	29	0	29	35.759	5.145	0	0	0	26	0	AP1M1	intronic	NA
GBM_P_T1--GL	chr19:16339049	C	NA	35	0	35	35.543	3.760	0	0	0	33	0	AP1M1	intronic	NA
GBM_P_T1--10	chr19:17838502	C	NA	33	0	33	31.788	7.364	0	0	0	23	0	MAP1S	exonic	stopgain_SNV
GBM_P_T1--11	chr19:17838502	C	NA	38	0	38	34.105	7.263	0	0	0	32	0	MAP1S	exonic	stopgain_SNV
GBM_P_T1--5	chr19:17838502	C	NA	16	0	16	34.125	6.592	0	0	0	13	0	MAP1S	exonic	stopgain_SNV
GBM_P_T1--7	chr19:17838502	C	A	24	0.167	20	34.950	4.628	4	36.750	2.872	17	4	MAP1S	exonic	stopgain_SNV
GBM_P_T1--9	chr19:17838502	C	NA	29	0	29	35.897	3.155	0	0	0	28	0	MAP1S	exonic	stopgain_SNV
GBM_P_T1--GL	chr19:17838502	C	NA	34	0	34	32.088	7.759	0	0	0	26	0	MAP1S	exonic	stopgain_SNV
GBM_P_T1--10	chr19:31767554	T	NA	24	0	24	34.208	5.595	0	0	0	20	0	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr19:31767554	T	C	26	0.154	22	32.773	7.709	4	35.750	3.403	18	4	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr19:31767554	T	NA	30	0	30	35.700	3.495	0	0	0	29	0	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr19:31767554	T	NA	22	0	22	36.955	2.278	0	0	0	22	0	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr19:31767554	T	NA	16	0	16	35.625	4.365	0	0	0	15	0	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr19:31767554	T	NA	41	0	41	35.220	4.356	0	0	0	37	0	TSHZ3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr19:36219681	C	NA	35	0	35	35.000	4.608	0	0	0	33	0	KMT2B	exonic	synonymous_SNV
GBM_P_T1--11	chr19:36219681	C	NA	45	0	45	33.356	5.597	0	0	0	37	0	KMT2B	exonic	synonymous_SNV
GBM_P_T1--5	chr19:36219681	C	NA	41	0	41	35.585	5.744	0	0	0	39	0	KMT2B	exonic	synonymous_SNV
GBM_P_T1--7	chr19:36219681	C	A	13	0.308	9	36.778	2.489	4	34.000	2.000	9	4	KMT2B	exonic	synonymous_SNV
GBM_P_T1--9	chr19:36219681	C	NA	40	0	40	34.925	5.279	0	0	0	34	0	KMT2B	exonic	synonymous_SNV
GBM_P_T1--GL	chr19:36219681	C	NA	45	0	45	34.978	4.087	0	0	0	41	0	KMT2B	exonic	synonymous_SNV
GBM_P_T1--10	chr19:39913760	T	NA	15	0	15	35.933	1.831	0	0	0	15	0	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr19:39913760	T	NA	32	0	32	35.250	4.635	0	0	0	30	0	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr19:39913760	T	C	28	0.036	27	34.407	4.668	1	37.000	0.000	22	1	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr19:39913760	T	C	10	0.300	7	33.286	3.352	3	37.000	0.000	6	3	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr19:39913760	T	NA	23	0	23	35.130	5.268	0	0	0	21	0	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr19:39913760	T	NA	34	0	34	34.324	6.390	0	0	0	30	0	PLEKHG2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr19:55703341	T	G	15	0.067	14	35.286	4.304	1	33.000	0.000	13	1	PTPRH	intronic	NA
GBM_P_T1--11	chr19:55703341	T	G	23	0.174	19	35.895	3.857	4	33.000	0.000	18	4	PTPRH	intronic	NA
GBM_P_T1--5	chr19:55703341	T	G	25	0.200	20	35.950	2.089	5	34.600	2.191	20	5	PTPRH	intronic	NA
GBM_P_T1--7	chr19:55703341	T	NA	13	0	13	34.615	5.140	0	0	0	11	0	PTPRH	intronic	NA
GBM_P_T1--9	chr19:55703341	T	NA	23	0	23	35.217	4.776	0	0	0	20	0	PTPRH	intronic	NA
GBM_P_T1--GL	chr19:55703341	T	NA	33	0	33	31.758	6.991	0	0	0	24	0	PTPRH	intronic	NA
GBM_P_T1--10	chr19:58220317	G	A	42	0.286	29	35.138	4.068	12	34.167	3.010	26	11	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr19:58220317	G	A	55	0.345	36	32.167	7.381	19	32.947	6.851	27	15	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr19:58220317	G	A	50	0.460	27	37.444	2.100	23	37.957	2.142	27	23	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr19:58220317	G	A	37	0.324	25	36.680	2.996	12	34.750	4.575	24	10	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr19:58220317	G	A	50	0.500	25	34.800	8.276	25	36.200	3.227	22	24	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr19:58220317	G	NA	61	0	61	34.000	6.760	0	0	0	53	0	ZNF154	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr19:5832399	G	NA	22	0	22	36.045	2.011	0	0	0	22	0	FUT6	exonic	synonymous_SNV
GBM_P_T1--11	chr19:5832399	G	NA	35	0	35	35.943	3.506	0	0	0	33	0	FUT6	exonic	synonymous_SNV
GBM_P_T1--5	chr19:5832399	G	T	30	0.133	25	36.640	2.396	4	37.750	1.500	25	4	FUT6	exonic	synonymous_SNV
GBM_P_T1--7	chr19:5832399	G	NA	14	0	14	37.357	1.781	0	0	0	14	0	FUT6	exonic	synonymous_SNV
GBM_P_T1--9	chr19:5832399	G	NA	33	0	33	36.333	3.159	0	0	0	31	0	FUT6	exonic	synonymous_SNV
GBM_P_T1--GL	chr19:5832399	G	NA	43	0	43	35.837	3.352	0	0	0	41	0	FUT6	exonic	synonymous_SNV
GBM_P_T1--10	chr20:44486479	C	NA	28	0	28	36.107	1.912	0	0	0	28	0	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr20:44486479	C	NA	32	0	31	35.903	2.844	0	0	0	30	0	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr20:44486479	C	A	14	0.214	11	36.727	5.101	3	36.667	3.512	10	3	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr20:44486479	C	NA	27	0	27	36.296	2.959	0	0	0	26	0	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr20:44486479	C	NA	23	0	23	35.957	2.804	0	0	0	22	0	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr20:44486479	C	NA	42	0	42	35.571	4.025	0	0	0	37	0	ZSWIM3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr20:60990703	C	NA	29	0	29	34.897	3.579	0	0	0	26	0	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--11	chr20:60990703	C	NA	37	0	36	33.639	6.048	0	0	0	31	0	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--5	chr20:60990703	C	NA	20	0	20	36.550	2.685	0	0	0	20	0	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--7	chr20:60990703	C	A	19	0.158	16	33.688	8.236	3	39.000	1.732	14	3	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--9	chr20:60990703	C	NA	16	0	16	37.438	2.220	0	0	0	16	0	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--GL	chr20:60990703	C	NA	40	0	40	34.825	6.644	0	0	0	36	0	RBBP8NL	exonic	synonymous_SNV
GBM_P_T1--10	chr21:43802319	G	A	86	0.140	74	36.595	2.923	12	32.750	7.436	71	9	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--11	chr21:43802319	G	A	67	0.269	49	35.878	5.840	18	36.389	3.449	45	17	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--5	chr21:43802319	G	NA	62	0	62	37.532	1.647	0	0	0	62	0	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--7	chr21:43802319	G	A	36	0.194	29	37.931	2.235	7	34.143	5.900	29	6	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--9	chr21:43802319	G	A	60	0.333	39	37.128	4.444	20	37.700	1.780	37	20	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--GL	chr21:43802319	G	NA	83	0	83	36.193	4.454	0	0	0	78	0	TMPRSS3	exonic	synonymous_SNV
GBM_P_T1--10	chr21:45651331	C	NA	31	0	31	35.903	4.700	0	0	0	30	0	ICOSLG	intronic	NA
GBM_P_T1--11	chr21:45651331	C	NA	31	0	31	35.742	4.865	0	0	0	29	0	ICOSLG	intronic	NA
GBM_P_T1--5	chr21:45651331	C	NA	12	0	12	36.250	2.137	0	0	0	12	0	ICOSLG	intronic	NA
GBM_P_T1--7	chr21:45651331	C	A	14	0.214	11	37.364	2.580	3	36.667	3.512	11	3	ICOSLG	intronic	NA
GBM_P_T1--9	chr21:45651331	C	NA	16	0	16	38.000	2.422	0	0	0	16	0	ICOSLG	intronic	NA
GBM_P_T1--GL	chr21:45651331	C	NA	39	0	39	37.051	2.828	0	0	0	38	0	ICOSLG	intronic	NA
GBM_P_T1--10	chr2:170127382	C	T	98	0.082	64	35.578	4.159	8	34.000	1.852	62	8	LRP2	intronic	NA
GBM_P_T1--11	chr2:170127382	C	T	81	0.235	43	35.605	4.019	19	33.421	1.261	42	19	LRP2	intronic	NA
GBM_P_T1--5	chr2:170127382	C	T	71	0.155	39	36.000	2.724	11	31.727	5.676	38	10	LRP2	intronic	NA
GBM_P_T1--7	chr2:170127382	C	T	38	0.105	25	36.920	3.135	4	31.500	3.000	24	3	LRP2	intronic	NA
GBM_P_T1--9	chr2:170127382	C	T	63	0.095	43	36.047	2.734	6	33.000	0.000	43	6	LRP2	intronic	NA
GBM_P_T1--GL	chr2:170127382	C	NA	97	0	57	34.596	6.262	0	0	0	51	0	LRP2	intronic	NA
GBM_P_T1--10	chr2:189926229	A	T	149	0.087	66	34.227	3.961	13	32.000	6.658	58	9	COL5A2	intronic	NA
GBM_P_T1--11	chr2:189926229	A	T	106	0.094	51	34.824	6.737	10	31.200	9.508	47	8	COL5A2	intronic	NA
GBM_P_T1--5	chr2:189926229	A	NA	82	0	43	36.209	2.908	0	0	0	41	0	COL5A2	intronic	NA
GBM_P_T1--7	chr2:189926229	A	NA	78	0	37	35.865	4.917	0	0	0	35	0	COL5A2	intronic	NA
GBM_P_T1--9	chr2:189926229	A	T	62	0.065	30	36.000	3.311	4	33.500	4.726	29	3	COL5A2	intronic	NA
GBM_P_T1--GL	chr2:189926229	A	NA	118	0	56	33.821	6.147	0	0	0	49	0	COL5A2	intronic	NA
GBM_P_T1--10	chr2:219614762	C	NA	44	0	44	36.341	5.771	0	0	0	41	0	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr2:219614762	C	NA	45	0	45	36.333	4.936	0	0	0	40	0	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr2:219614762	C	NA	36	0	36	37.556	4.198	0	0	0	34	0	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr2:219614762	C	A	24	0.167	20	38.500	1.539	4	38.500	1.732	20	4	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr2:219614762	C	NA	38	0	38	37.447	3.531	0	0	0	35	0	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr2:219614762	C	NA	60	0	60	36.700	4.972	0	0	0	55	0	TTLL4	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr2:220082518	G	NA	37	0	37	35.432	5.923	0	0	0	33	0	ABCB6	exonic	synonymous_SNV
GBM_P_T1--11	chr2:220082518	G	NA	41	0	41	35.171	6.204	0	0	0	38	0	ABCB6	exonic	synonymous_SNV
GBM_P_T1--5	chr2:220082518	G	NA	48	0	48	36.854	3.661	0	0	0	46	0	ABCB6	exonic	synonymous_SNV
GBM_P_T1--7	chr2:220082518	G	A	11	0.364	7	32.143	8.840	4	34.000	2.000	5	4	ABCB6	exonic	synonymous_SNV
GBM_P_T1--9	chr2:220082518	G	NA	32	0	32	36.031	4.802	0	0	0	29	0	ABCB6	exonic	synonymous_SNV
GBM_P_T1--GL	chr2:220082518	G	NA	49	0	49	35.816	5.003	0	0	0	45	0	ABCB6	exonic	synonymous_SNV
GBM_P_T1--10	chr2:220472966	C	A	17	0.235	13	36.308	2.057	4	34.000	2.000	13	4	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr2:220472966	C	NA	34	0	34	36.676	3.444	0	0	0	32	0	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr2:220472966	C	NA	23	0	23	36.826	5.314	0	0	0	22	0	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr2:220472966	C	NA	20	0	20	36.100	3.243	0	0	0	19	0	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr2:220472966	C	NA	33	0	33	36.909	3.367	0	0	0	31	0	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr2:220472966	C	NA	36	0	36	36.111	4.490	0	0	0	35	0	STK11IP	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr22:25275509	C	NA	20	0	20	37.000	3.129	0	0	0	19	0	SGSM1	intronic	NA
GBM_P_T1--11	chr22:25275509	C	NA	23	0	23	36.043	3.097	0	0	0	22	0	SGSM1	intronic	NA
GBM_P_T1--5	chr22:25275509	C	NA	24	0	24	38.125	3.207	0	0	0	23	0	SGSM1	intronic	NA
GBM_P_T1--7	chr22:25275509	C	A	19	0.158	16	36.625	3.324	3	40.000	0.000	15	3	SGSM1	intronic	NA
GBM_P_T1--9	chr22:25275509	C	NA	18	0	18	37.000	4.116	0	0	0	16	0	SGSM1	intronic	NA
GBM_P_T1--GL	chr22:25275509	C	NA	33	0	33	37.424	2.693	0	0	0	33	0	SGSM1	intronic	NA
GBM_P_T1--10	chr2:237074609	C	NA	45	0	45	35.311	5.688	0	0	0	41	0	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr2:237074609	C	NA	43	0	43	36.907	3.578	0	0	0	42	0	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr2:237074609	C	NA	29	0	29	36.828	3.423	0	0	0	27	0	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr2:237074609	C	A	25	0.160	21	37.286	2.239	4	36.750	2.872	21	4	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr2:237074609	C	A	36	0.028	35	36.771	3.361	1	37.000	0.000	34	1	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr2:237074609	C	NA	57	0	57	36.404	4.013	0	0	0	53	0	GBX2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr22:37263365	T	NA	40	0	40	34.925	4.172	0	0	0	38	0	NCF4	intronic	NA
GBM_P_T1--11	chr22:37263365	T	NA	43	0	43	36.628	2.320	0	0	0	43	0	NCF4	intronic	NA
GBM_P_T1--5	chr22:37263365	T	NA	43	0	43	35.930	3.011	0	0	0	41	0	NCF4	intronic	NA
GBM_P_T1--7	chr22:37263365	T	C	28	0.143	24	36.125	1.941	4	38.500	1.732	24	4	NCF4	intronic	NA
GBM_P_T1--9	chr22:37263365	T	C	34	0.029	33	36.636	2.679	1	37.000	0.000	32	1	NCF4	intronic	NA
GBM_P_T1--GL	chr22:37263365	T	NA	56	0	56	36.036	2.997	0	0	0	54	0	NCF4	intronic	NA
GBM_P_T1--10	chr2:241713721	C	NA	28	0	28	33.393	8.043	0	0	0	23	0	KIF1A	intronic	NA
GBM_P_T1--11	chr2:241713721	C	NA	23	0	23	34.478	5.151	0	0	0	21	0	KIF1A	intronic	NA
GBM_P_T1--5	chr2:241713721	C	A	21	0.190	17	33.412	6.052	4	36.750	2.872	15	4	KIF1A	intronic	NA
GBM_P_T1--7	chr2:241713721	C	NA	18	0	18	33.556	6.022	0	0	0	16	0	KIF1A	intronic	NA
GBM_P_T1--9	chr2:241713721	C	NA	21	0	21	36.333	3.706	0	0	0	20	0	KIF1A	intronic	NA
GBM_P_T1--GL	chr2:241713721	C	NA	33	0	33	33.879	4.491	0	0	0	29	0	KIF1A	intronic	NA
GBM_P_T1--10	chr2:68546473	G	NA	25	0	25	36.480	3.242	0	0	0	24	0	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--11	chr2:68546473	G	NA	26	0	26	35.269	5.150	0	0	0	24	0	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--5	chr2:68546473	G	NA	32	0	32	35.969	3.980	0	0	0	30	0	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--7	chr2:68546473	G	A	22	0.182	18	36.556	3.552	4	35.000	2.309	17	4	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--9	chr2:68546473	G	NA	23	0	23	36.174	2.367	0	0	0	23	0	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--GL	chr2:68546473	G	NA	37	0	37	36.000	2.550	0	0	0	36	0	CNRIP1	exonic	synonymous_SNV
GBM_P_T1--10	chr2:7018212	C	NA	75	0	75	35.813	5.143	0	0	0	70	0	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr2:7018212	C	NA	54	0	54	34.648	5.793	0	0	0	45	0	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr2:7018212	C	NA	52	0	52	36.673	4.186	0	0	0	49	0	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr2:7018212	C	A	20	0.200	16	37.188	2.482	4	36.000	2.000	16	4	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr2:7018212	C	NA	32	0	32	37.344	2.695	0	0	0	32	0	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr2:7018212	C	NA	82	0	82	35.085	4.997	0	0	0	73	0	RSAD2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr2:98162032	C	A	39	0.026	38	37.921	2.784	1	37.000	0.000	37	1	ANKRD36B	intronic	NA
GBM_P_T1--11	chr2:98162032	C	NA	34	0	34	38.206	2.952	0	0	0	33	0	ANKRD36B	intronic	NA
GBM_P_T1--5	chr2:98162032	C	NA	38	0	38	38.000	3.255	0	0	0	36	0	ANKRD36B	intronic	NA
GBM_P_T1--7	chr2:98162032	C	A	20	0.200	16	38.500	1.549	4	38.500	1.732	16	4	ANKRD36B	intronic	NA
GBM_P_T1--9	chr2:98162032	C	NA	40	0	40	38.000	2.375	0	0	0	40	0	ANKRD36B	intronic	NA
GBM_P_T1--GL	chr2:98162032	C	NA	38	0	38	36.947	5.271	0	0	0	35	0	ANKRD36B	intronic	NA
GBM_P_T1--10	chr3:122338720	A	NA	44	0	44	36.682	3.575	0	0	0	42	0	PARP15	intronic	NA
GBM_P_T1--11	chr3:122338720	A	NA	17	0	17	36.941	2.609	0	0	0	17	0	PARP15	intronic	NA
GBM_P_T1--5	chr3:122338720	A	NA	16	0	16	37.062	4.683	0	0	0	15	0	PARP15	intronic	NA
GBM_P_T1--7	chr3:122338720	A	NA	10	0	10	36.700	2.869	0	0	0	10	0	PARP15	intronic	NA
GBM_P_T1--9	chr3:122338720	A	T	18	0.278	13	38.000	2.614	5	36.800	2.490	13	5	PARP15	intronic	NA
GBM_P_T1--GL	chr3:122338720	A	NA	37	0	37	36.946	4.109	0	0	0	34	0	PARP15	intronic	NA
GBM_P_T1--10	chr3:186952402	C	G	226	0.177	186	34.699	4.669	40	36.175	3.257	161	38	MASP1	UTR3	NA
GBM_P_T1--11	chr3:186952402	C	G	191	0.188	154	35.760	3.208	36	36.667	2.461	146	36	MASP1	UTR3	NA
GBM_P_T1--5	chr3:186952402	C	G	193	0.176	158	36.006	4.403	34	36.529	3.145	147	33	MASP1	UTR3	NA
GBM_P_T1--7	chr3:186952402	C	G	109	0.229	83	35.675	3.433	25	34.920	6.958	76	22	MASP1	UTR3	NA
GBM_P_T1--9	chr3:186952402	C	G	185	0.249	138	36.384	3.107	46	36.565	3.074	133	45	MASP1	UTR3	NA
GBM_P_T1--GL	chr3:186952402	C	NA	142	0	142	35.563	3.915	0	0	0	135	0	MASP1	UTR3	NA
GBM_P_T1--10	chr3:38401852	C	NA	30	0	30	36.067	6.470	0	0	0	28	0	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr3:38401852	C	NA	25	0	25	35.760	4.265	0	0	0	23	0	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr3:38401852	C	NA	23	0	23	36.957	3.097	0	0	0	22	0	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr3:38401852	C	A	15	0.200	12	36.500	2.393	3	35.667	2.309	12	3	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr3:38401852	C	NA	15	0	15	37.467	3.543	0	0	0	14	0	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr3:38401852	C	NA	35	0	35	36.914	2.769	0	0	0	34	0	XYLB	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr3:41759242	C	NA	52	0	52	34.962	6.190	0	0	0	46	0	ULK4	exonic	synonymous_SNV
GBM_P_T1--11	chr3:41759242	C	NA	26	0	26	37.231	2.006	0	0	0	26	0	ULK4	exonic	synonymous_SNV
GBM_P_T1--5	chr3:41759242	C	A	29	0.138	25	37.280	1.768	4	37.750	1.500	25	4	ULK4	exonic	synonymous_SNV
GBM_P_T1--7	chr3:41759242	C	NA	26	0	26	35.962	3.821	0	0	0	23	0	ULK4	exonic	synonymous_SNV
GBM_P_T1--9	chr3:41759242	C	NA	44	0	44	36.659	2.736	0	0	0	42	0	ULK4	exonic	synonymous_SNV
GBM_P_T1--GL	chr3:41759242	C	NA	64	0	64	36.281	3.088	0	0	0	60	0	ULK4	exonic	synonymous_SNV
GBM_P_T1--10	chr3:42605134	C	NA	32	0	32	35.594	3.783	0	0	0	29	0	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr3:42605134	C	NA	32	0	32	34.844	4.236	0	0	0	28	0	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr3:42605134	C	NA	23	0	23	35.087	4.348	0	0	0	19	0	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr3:42605134	C	NA	15	0	15	37.067	2.052	0	0	0	15	0	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr3:42605134	C	A	23	0.174	19	36.474	2.065	4	35.000	2.309	19	4	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr3:42605134	C	NA	55	0	55	36.218	3.309	0	0	0	52	0	SEC22C	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr3:51937348	C	NA	35	0	34	36.824	4.840	0	0	0	32	0	IQCF1	UTR5	NA
GBM_P_T1--11	chr3:51937348	C	A	18	0.167	15	36.533	3.681	3	39.000	1.732	14	3	IQCF1	UTR5	NA
GBM_P_T1--5	chr3:51937348	C	NA	13	0	13	36.846	2.035	0	0	0	13	0	IQCF1	UTR5	NA
GBM_P_T1--7	chr3:51937348	C	NA	23	0	23	36.000	5.527	0	0	0	21	0	IQCF1	UTR5	NA
GBM_P_T1--9	chr3:51937348	C	NA	32	0	32	37.938	3.272	0	0	0	31	0	IQCF1	UTR5	NA
GBM_P_T1--GL	chr3:51937348	C	NA	47	0	47	36.660	3.059	0	0	0	45	0	IQCF1	UTR5	NA
GBM_P_T1--10	chr3:53531532	C	NA	31	0	31	35.484	4.024	0	0	0	28	0	CACNA1D	intronic	NA
GBM_P_T1--11	chr3:53531532	C	NA	38	0	38	35.789	6.152	0	0	0	35	0	CACNA1D	intronic	NA
GBM_P_T1--5	chr3:53531532	C	NA	34	0	34	37.118	2.143	0	0	0	34	0	CACNA1D	intronic	NA
GBM_P_T1--7	chr3:53531532	C	A	18	0.167	15	37.133	1.552	3	39.000	1.732	15	3	CACNA1D	intronic	NA
GBM_P_T1--9	chr3:53531532	C	NA	11	0	11	38.818	2.272	0	0	0	11	0	CACNA1D	intronic	NA
GBM_P_T1--GL	chr3:53531532	C	NA	41	0	41	37.268	3.522	0	0	0	40	0	CACNA1D	intronic	NA
GBM_P_T1--10	chr3:54420721	G	NA	26	0	25	36.920	4.102	0	0	0	24	0	CACNA2D3	intronic	NA
GBM_P_T1--11	chr3:54420721	G	NA	26	0	26	37.385	3.275	0	0	0	25	0	CACNA2D3	intronic	NA
GBM_P_T1--5	chr3:54420721	G	T	17	0.235	13	38.308	2.175	4	34.000	2.000	13	4	CACNA2D3	intronic	NA
GBM_P_T1--7	chr3:54420721	G	NA	12	0	12	36.667	5.087	0	0	0	11	0	CACNA2D3	intronic	NA
GBM_P_T1--9	chr3:54420721	G	T	20	0.100	18	37.333	4.102	2	33.000	0.000	17	2	CACNA2D3	intronic	NA
GBM_P_T1--GL	chr3:54420721	G	NA	44	0	44	37.182	2.730	0	0	0	43	0	CACNA2D3	intronic	NA
GBM_P_T1--10	chr3:88199343	C	A	25	0.160	21	34.048	4.985	4	37.000	0.000	18	4	C3orf38	intronic	NA
GBM_P_T1--11	chr3:88199343	C	NA	17	0	17	32.529	6.155	0	0	0	14	0	C3orf38	intronic	NA
GBM_P_T1--5	chr3:88199343	C	NA	14	0	14	34.286	6.486	0	0	0	12	0	C3orf38	intronic	NA
GBM_P_T1--7	chr3:88199343	C	NA	12	0	12	37.333	2.462	0	0	0	12	0	C3orf38	intronic	NA
GBM_P_T1--9	chr3:88199343	C	NA	12	0	12	37.333	2.462	0	0	0	12	0	C3orf38	intronic	NA
GBM_P_T1--GL	chr3:88199343	C	NA	39	0	39	33.590	4.761	0	0	0	34	0	C3orf38	intronic	NA
GBM_P_T1--10	chr4:2306548	G	A	38	0.263	28	35.214	5.065	10	36.900	1.663	26	10	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr4:2306548	G	A	24	0.208	19	35.632	6.011	5	34.200	4.382	17	4	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr4:2306548	G	A	32	0.312	22	36.636	3.200	10	35.500	3.629	21	9	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr4:2306548	G	A	13	0.308	9	38.333	1.581	4	35.000	2.309	9	4	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr4:2306548	G	A	32	0.375	19	37.947	2.592	12	35.500	4.338	19	10	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr4:2306548	G	NA	42	0	42	35.738	4.440	0	0	0	39	0	ZFYVE28	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr4:49103506	T	G	28	0.250	21	37.524	3.473	7	37.857	1.464	20	7	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--11	chr4:49103506	T	G	25	0.120	22	36.864	4.051	3	38.000	1.732	21	3	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--5	chr4:49103506	T	G	37	0.054	35	37.800	2.435	2	38.500	2.121	35	2	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--7	chr4:49103506	T	G	35	0.029	34	38.294	2.960	1	37.000	0.000	33	1	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--9	chr4:49103506	T	G	41	0.024	40	38.300	2.514	1	40.000	0.000	39	1	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--GL	chr4:49103506	T	NA	34	0	34	37.647	3.813	0	0	0	32	0	CWH43(dist=39411),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--10	chr4:49273173	C	A	49	0.122	43	35.651	3.791	6	36.667	3.141	39	6	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--11	chr4:49273173	C	A	49	0.041	47	34.362	4.780	2	31.000	12.728	40	1	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--5	chr4:49273173	C	A	45	0.067	42	36.810	2.707	3	38.000	1.732	41	3	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--7	chr4:49273173	C	A	51	0.059	48	36.375	3.311	3	35.333	4.041	46	3	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--9	chr4:49273173	C	A	70	0.200	56	36.339	2.745	14	37.143	3.231	55	13	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--GL	chr4:49273173	C	NA	48	0	48	35.333	5.525	0	0	0	44	0	CWH43(dist=209078),NONE(dist=NONE)	intergenic	NA
GBM_P_T1--10	chr4:76474792	C	T	27	0.037	26	25.231	11.938	1	33.000	0.000	11	1	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--11	chr4:76474792	C	T	30	0.133	26	28.423	10.234	4	25.750	8.846	14	2	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--5	chr4:76474792	C	T	26	0.308	18	30.056	10.513	8	27.250	6.944	11	4	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--7	chr4:76474792	C	NA	20	0	18	32.778	8.572	0	0	0	13	0	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--9	chr4:76474792	C	NA	30	0	29	26.517	10.891	0	0	0	15	0	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--GL	chr4:76474792	C	NA	46	0	43	28.814	10.110	0	0	0	26	0	THAP6(dist=19556),C4orf26(dist=6466)	intergenic	NA
GBM_P_T1--10	chr5:140579943	C	T	169	0.195	136	35.963	4.448	33	35.424	5.922	124	29	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr5:140579943	C	T	91	0.330	61	36.508	4.166	30	34.800	4.979	58	27	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr5:140579943	C	T	108	0.417	63	37.206	3.673	45	36.844	2.421	59	45	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr5:140579943	C	T	54	0.333	36	37.389	3.857	18	36.833	3.222	34	17	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr5:140579943	C	T	93	0.387	57	37.456	2.164	36	35.917	5.028	57	34	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr5:140579943	C	NA	126	0	126	36.421	4.349	0	0	0	117	0	PCDHB11	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr5:156752581	C	NA	36	0	36	37.417	1.873	0	0	0	36	0	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--11	chr5:156752581	C	NA	42	0	42	36.667	3.660	0	0	0	40	0	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--5	chr5:156752581	C	NA	40	0	40	37.175	2.978	0	0	0	39	0	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--7	chr5:156752581	C	A	28	0.143	24	37.625	2.281	4	37.000	0.000	24	4	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--9	chr5:156752581	C	NA	36	0	36	37.778	1.838	0	0	0	36	0	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--GL	chr5:156752581	C	NA	57	0	57	36.614	3.261	0	0	0	54	0	CYFIP2	exonic	synonymous_SNV
GBM_P_T1--10	chr5:178952039	G	T	28	0.036	27	37.852	2.492	1	40.000	0.000	27	1	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--11	chr5:178952039	G	NA	28	0	28	37.214	4.802	0	0	0	27	0	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--5	chr5:178952039	G	NA	25	0	25	38.480	2.163	0	0	0	25	0	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--7	chr5:178952039	G	T	11	0.273	8	38.375	2.560	3	38.000	1.732	8	3	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--9	chr5:178952039	G	NA	22	0	22	38.955	2.193	0	0	0	22	0	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--GL	chr5:178952039	G	NA	34	0	34	36.500	6.052	0	0	0	32	0	ADAMTS2(dist=179608),RUFY1(dist=25523)	intergenic	NA
GBM_P_T1--10	chr6:10891844	C	G	29	0.931	2	27.500	7.778	27	35.704	3.268	1	25	SYCP2L	intronic	NA
GBM_P_T1--11	chr6:10891844	C	G	25	1.000	0	0.000	0.000	25	34.480	5.524	0	21	SYCP2L	intronic	NA
GBM_P_T1--5	chr6:10891844	C	G	20	0.950	1	37.000	0.000	19	32.842	8.707	1	16	SYCP2L	intronic	NA
GBM_P_T1--7	chr6:10891844	C	NA	14	0	14	31.000	11.327	0	0	0	10	0	SYCP2L	intronic	NA
GBM_P_T1--9	chr6:10891844	C	G	11	1.000	0	0.000	0.000	11	33.545	6.455	0	10	SYCP2L	intronic	NA
GBM_P_T1--GL	chr6:10891844	C	NA	43	0	43	26.163	11.838	0	0	0	22	0	SYCP2L	intronic	NA
GBM_P_T1--10	chr6:10891846	C	G	27	0.926	2	35.000	2.828	25	34.480	3.874	2	23	SYCP2L	intronic	NA
GBM_P_T1--11	chr6:10891846	C	G	24	0.958	1	27.000	0.000	23	34.522	5.501	0	20	SYCP2L	intronic	NA
GBM_P_T1--5	chr6:10891846	C	G	19	0.947	1	37.000	0.000	18	34.500	6.474	1	16	SYCP2L	intronic	NA
GBM_P_T1--7	chr6:10891846	C	NA	14	0	14	32.714	8.213	0	0	0	11	0	SYCP2L	intronic	NA
GBM_P_T1--9	chr6:10891846	C	G	11	1.000	0	0.000	0.000	11	35.000	4.539	0	9	SYCP2L	intronic	NA
GBM_P_T1--GL	chr6:10891846	C	NA	43	0	43	29.047	9.803	0	0	0	26	0	SYCP2L	intronic	NA
GBM_P_T1--10	chr6:134493814	C	NA	44	0	44	36.636	5.612	0	0	0	42	0	SGK1	exonic	synonymous_SNV
GBM_P_T1--11	chr6:134493814	C	NA	50	0	50	37.320	3.611	0	0	0	48	0	SGK1	exonic	synonymous_SNV
GBM_P_T1--5	chr6:134493814	C	NA	61	0	61	37.508	2.592	0	0	0	60	0	SGK1	exonic	synonymous_SNV
GBM_P_T1--7	chr6:134493814	C	A	26	0.154	22	38.182	1.893	4	35.750	3.403	22	4	SGK1	exonic	synonymous_SNV
GBM_P_T1--9	chr6:134493814	C	A	46	0.043	44	37.182	3.135	2	37.000	0.000	42	2	SGK1	exonic	synonymous_SNV
GBM_P_T1--GL	chr6:134493814	C	NA	33	0	33	37.091	3.449	0	0	0	31	0	SGK1	exonic	synonymous_SNV
GBM_P_T1--10	chr6:152539574	A	T	154	0.006	95	35.916	2.898	1	33.000	0.000	90	1	SYNE1	intronic	NA
GBM_P_T1--11	chr6:152539574	A	NA	164	0	95	35.968	2.841	0	0	0	90	0	SYNE1	intronic	NA
GBM_P_T1--5	chr6:152539574	A	T	97	0.258	50	36.200	2.914	25	35.120	3.321	48	24	SYNE1	intronic	NA
GBM_P_T1--7	chr6:152539574	A	NA	79	0	42	36.690	2.042	0	0	0	41	0	SYNE1	intronic	NA
GBM_P_T1--9	chr6:152539574	A	NA	120	0	70	37.229	1.635	0	0	0	70	0	SYNE1	intronic	NA
GBM_P_T1--GL	chr6:152539574	A	NA	181	0	92	36.141	3.122	0	0	0	88	0	SYNE1	intronic	NA
GBM_P_T1--10	chr6:27278134	T	C	66	0.227	50	34.660	7.058	15	35.867	4.422	43	13	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr6:27278134	T	NA	61	0	61	34.410	6.018	0	0	0	53	0	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr6:27278134	T	NA	50	0	50	35.940	2.721	0	0	0	49	0	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr6:27278134	T	C	39	0.128	34	34.794	4.842	5	34.800	5.020	30	4	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr6:27278134	T	NA	62	0	62	35.452	5.612	0	0	0	57	0	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr6:27278134	T	NA	90	0	90	34.767	5.896	0	0	0	79	0	POM121L2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr6:30859254	C	NA	25	0	25	32.320	8.445	0	0	0	20	0	DDR1	exonic	synonymous_SNV
GBM_P_T1--11	chr6:30859254	C	NA	41	0	40	34.875	6.398	0	0	0	36	0	DDR1	exonic	synonymous_SNV
GBM_P_T1--5	chr6:30859254	C	NA	42	0	42	34.548	5.343	0	0	0	36	0	DDR1	exonic	synonymous_SNV
GBM_P_T1--7	chr6:30859254	C	A	14	0.214	11	36.182	3.894	3	35.667	2.309	10	3	DDR1	exonic	synonymous_SNV
GBM_P_T1--9	chr6:30859254	C	NA	39	0	39	33.744	7.779	0	0	0	32	0	DDR1	exonic	synonymous_SNV
GBM_P_T1--GL	chr6:30859254	C	NA	54	0	54	34.000	4.899	0	0	0	46	0	DDR1	exonic	synonymous_SNV
GBM_P_T1--10	chr6:31732210	C	A	34	0.059	32	35.688	6.045	2	26.000	15.556	29	1	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--11	chr6:31732210	C	NA	38	0	38	36.053	4.753	0	0	0	35	0	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--5	chr6:31732210	C	NA	25	0	25	36.040	3.780	0	0	0	24	0	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--7	chr6:31732210	C	A	17	0.176	14	37.500	2.378	3	37.667	4.041	14	3	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--9	chr6:31732210	C	NA	39	0	39	36.410	3.431	0	0	0	36	0	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--GL	chr6:31732210	C	NA	42	0	42	35.714	4.723	0	0	0	39	0	MSH5-SAPCD1	ncRNA_intronic	NA
GBM_P_T1--10	chr6:35764556	C	NA	38	0	38	36.474	3.833	0	0	0	35	0	CLPS	intronic	NA
GBM_P_T1--11	chr6:35764556	C	NA	51	0	51	38.176	2.355	0	0	0	51	0	CLPS	intronic	NA
GBM_P_T1--5	chr6:35764556	C	A	27	0.148	23	38.957	1.461	4	37.750	1.500	23	4	CLPS	intronic	NA
GBM_P_T1--7	chr6:35764556	C	NA	20	0	20	38.300	1.949	0	0	0	20	0	CLPS	intronic	NA
GBM_P_T1--9	chr6:35764556	C	NA	25	0	25	37.960	3.129	0	0	0	24	0	CLPS	intronic	NA
GBM_P_T1--GL	chr6:35764556	C	NA	46	0	46	36.891	4.438	0	0	0	41	0	CLPS	intronic	NA
GBM_P_T1--10	chr6:49494409	A	NA	75	0	75	33.507	4.601	0	0	0	63	0	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr6:49494409	A	C	66	0.152	56	33.125	4.468	10	34.700	3.653	49	9	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr6:49494409	A	NA	66	0	63	33.190	5.518	0	0	0	54	0	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr6:49494409	A	NA	42	0	41	34.244	4.805	0	0	0	36	0	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr6:49494409	A	C	68	0.265	49	32.510	5.409	18	36.944	2.532	35	18	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr6:49494409	A	NA	75	0	74	33.135	5.266	0	0	0	64	0	GLYATL3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr6:52138679	C	NA	29	0	29	36.172	5.682	0	0	0	25	0	MCM3	exonic	synonymous_SNV
GBM_P_T1--11	chr6:52138679	C	A	28	0.036	27	37.333	3.363	1	40.000	0.000	26	1	MCM3	exonic	synonymous_SNV
GBM_P_T1--5	chr6:52138679	C	NA	26	0	26	36.846	5.379	0	0	0	24	0	MCM3	exonic	synonymous_SNV
GBM_P_T1--7	chr6:52138679	C	A	15	0.200	12	35.583	4.944	3	38.000	1.732	10	3	MCM3	exonic	synonymous_SNV
GBM_P_T1--9	chr6:52138679	C	NA	38	0	38	37.132	4.800	0	0	0	35	0	MCM3	exonic	synonymous_SNV
GBM_P_T1--GL	chr6:52138679	C	NA	35	0	35	35.943	4.765	0	0	0	32	0	MCM3	exonic	synonymous_SNV
GBM_P_T1--10	chr6:7301773	C	NA	22	0	22	36.409	5.729	0	0	0	20	0	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr6:7301773	C	NA	15	0	15	37.400	2.667	0	0	0	15	0	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr6:7301773	C	A	11	0.273	8	38.500	1.604	3	37.000	0.000	8	3	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr6:7301773	C	NA	16	0	16	37.250	2.113	0	0	0	16	0	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr6:7301773	C	NA	15	0	15	36.933	3.011	0	0	0	14	0	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr6:7301773	C	NA	33	0	33	37.121	3.333	0	0	0	31	0	SSR1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr6:7891843	C	NA	39	0	39	36.487	3.068	0	0	0	37	0	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--11	chr6:7891843	C	A	20	0.200	16	36.625	3.138	4	37.000	0.000	16	4	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--5	chr6:7891843	C	NA	23	0	23	35.739	7.527	0	0	0	20	0	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--7	chr6:7891843	C	NA	14	0	14	36.357	4.431	0	0	0	12	0	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--9	chr6:7891843	C	NA	26	0	26	35.962	4.152	0	0	0	24	0	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--GL	chr6:7891843	C	NA	55	0	55	37.218	4.144	0	0	0	52	0	BLOC1S5-TXNDC5	ncRNA_intronic	NA
GBM_P_T1--10	chr6:90415802	C	NA	31	0	31	36.548	3.558	0	0	0	29	0	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr6:90415802	C	A	22	0.045	21	36.476	4.308	1	33.000	0.000	20	1	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr6:90415802	C	NA	27	0	27	36.519	3.118	0	0	0	26	0	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr6:90415802	C	A	14	0.286	10	37.200	3.882	4	35.750	3.403	9	4	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr6:90415802	C	NA	28	0	28	35.500	3.512	0	0	0	27	0	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr6:90415802	C	NA	36	0	36	36.944	3.023	0	0	0	35	0	MDN1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr7:134849457	C	NA	30	0	30	34.800	4.429	0	0	0	26	0	TMEM140	exonic	stopgain_SNV
GBM_P_T1--11	chr7:134849457	C	NA	31	0	31	35.097	4.384	0	0	0	28	0	TMEM140	exonic	stopgain_SNV
GBM_P_T1--5	chr7:134849457	C	A	26	0.154	22	35.409	3.568	4	36.000	2.000	20	4	TMEM140	exonic	stopgain_SNV
GBM_P_T1--7	chr7:134849457	C	NA	13	0	13	33.923	9.491	0	0	0	11	0	TMEM140	exonic	stopgain_SNV
GBM_P_T1--9	chr7:134849457	C	NA	33	0	33	36.364	1.692	0	0	0	33	0	TMEM140	exonic	stopgain_SNV
GBM_P_T1--GL	chr7:134849457	C	NA	34	0	34	35.471	3.553	0	0	0	32	0	TMEM140	exonic	stopgain_SNV
GBM_P_T1--10	chr7:44571863	C	NA	25	0	25	32.320	7.669	0	0	0	18	0	NPC1L1	intronic	NA
GBM_P_T1--11	chr7:44571863	C	NA	13	0	13	33.308	7.296	0	0	0	11	0	NPC1L1	intronic	NA
GBM_P_T1--5	chr7:44571863	C	A	22	0.182	18	34.889	3.708	4	36.750	2.872	16	4	NPC1L1	intronic	NA
GBM_P_T1--7	chr7:44571863	C	NA	13	0	13	34.769	4.952	0	0	0	10	0	NPC1L1	intronic	NA
GBM_P_T1--9	chr7:44571863	C	NA	19	0	19	32.579	9.714	0	0	0	16	0	NPC1L1	intronic	NA
GBM_P_T1--GL	chr7:44571863	C	NA	35	0	35	34.629	5.494	0	0	0	31	0	NPC1L1	intronic	NA
GBM_P_T1--10	chr7:55241541	C	NA	50	0	50	35.720	3.637	0	0	0	47	0	EGFR	intronic	NA
GBM_P_T1--11	chr7:55241541	C	NA	37	0	37	34.784	6.088	0	0	0	34	0	EGFR	intronic	NA
GBM_P_T1--5	chr7:55241541	C	NA	44	0	44	36.614	3.805	0	0	0	42	0	EGFR	intronic	NA
GBM_P_T1--7	chr7:55241541	C	A	22	0.182	18	36.167	4.176	4	35.000	2.309	17	4	EGFR	intronic	NA
GBM_P_T1--9	chr7:55241541	C	NA	48	0	48	36.833	3.916	0	0	0	47	0	EGFR	intronic	NA
GBM_P_T1--GL	chr7:55241541	C	NA	51	0	51	36.588	3.061	0	0	0	49	0	EGFR	intronic	NA
GBM_P_T1--10	chr8:125577893	C	NA	47	0	47	36.489	2.702	0	0	0	47	0	MTSS1	intronic	NA
GBM_P_T1--11	chr8:125577893	C	NA	38	0	38	34.500	7.307	0	0	0	33	0	MTSS1	intronic	NA
GBM_P_T1--5	chr8:125577893	C	NA	41	0	41	36.561	3.867	0	0	0	37	0	MTSS1	intronic	NA
GBM_P_T1--7	chr8:125577893	C	A	21	0.190	17	36.765	3.545	4	37.000	0.000	16	4	MTSS1	intronic	NA
GBM_P_T1--9	chr8:125577893	C	NA	23	0	23	35.696	5.489	0	0	0	21	0	MTSS1	intronic	NA
GBM_P_T1--GL	chr8:125577893	C	NA	34	0	34	34.324	4.797	0	0	0	30	0	MTSS1	intronic	NA
GBM_P_T1--10	chr8:145626070	C	A	31	0.161	26	35.000	6.164	5	36.800	2.490	21	5	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr8:145626070	C	NA	33	0	33	36.333	4.748	0	0	0	32	0	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr8:145626070	C	NA	27	0	27	36.704	5.326	0	0	0	25	0	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr8:145626070	C	A	23	0.043	22	36.045	2.836	1	33.000	0.000	22	1	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr8:145626070	C	NA	22	0	22	36.364	3.017	0	0	0	21	0	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr8:145626070	C	NA	35	0	35	35.314	4.776	0	0	0	31	0	CPSF1	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr8:22005950	G	A	41	0.293	29	34.586	4.548	12	37.083	7.267	24	11	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr8:22005950	G	A	36	0.278	26	35.423	4.518	10	37.400	2.716	23	10	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr8:22005950	G	A	36	0.389	22	32.682	7.864	14	37.143	1.610	17	14	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr8:22005950	G	A	21	0.476	11	37.091	4.011	10	34.800	5.808	10	7	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr8:22005950	G	A	38	0.447	21	36.048	4.068	17	36.941	2.609	20	17	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr8:22005950	G	NA	42	0	42	34.738	5.075	0	0	0	38	0	LGI3	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr8:28900228	C	NA	83	0	83	35.940	4.218	0	0	0	77	0	HMBOX1	intronic	NA
GBM_P_T1--11	chr8:28900228	C	NA	65	0	65	36.092	5.468	0	0	0	61	0	HMBOX1	intronic	NA
GBM_P_T1--5	chr8:28900228	C	NA	43	0	43	36.884	3.134	0	0	0	41	0	HMBOX1	intronic	NA
GBM_P_T1--7	chr8:28900228	C	A	28	0.143	24	36.708	4.144	4	37.750	1.500	21	4	HMBOX1	intronic	NA
GBM_P_T1--9	chr8:28900228	C	NA	46	0	46	37.130	2.872	0	0	0	45	0	HMBOX1	intronic	NA
GBM_P_T1--GL	chr8:28900228	C	NA	68	0	68	35.588	5.187	0	0	0	61	0	HMBOX1	intronic	NA
GBM_P_T1--10	chr9:134002952	C	NA	30	0	30	37.233	3.002	0	0	0	29	0	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr9:134002952	C	NA	34	0	34	37.088	3.679	0	0	0	33	0	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr9:134002952	C	NA	21	0	21	36.381	7.096	0	0	0	20	0	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr9:134002952	C	A	24	0.167	20	37.200	2.821	4	36.750	2.872	20	4	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr9:134002952	C	NA	30	0	30	35.833	6.449	0	0	0	28	0	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr9:134002952	C	NA	43	0	43	36.907	3.414	0	0	0	40	0	NUP214	exonic	nonsynonymous_SNV
GBM_P_T1--10	chr9:136660880	C	NA	27	0	27	34.259	4.646	0	0	0	22	0	VAV2	intronic	NA
GBM_P_T1--11	chr9:136660880	C	NA	38	0	38	36.474	3.524	0	0	0	35	0	VAV2	intronic	NA
GBM_P_T1--5	chr9:136660880	C	A	23	0.174	19	36.316	5.706	4	36.750	2.872	18	4	VAV2	intronic	NA
GBM_P_T1--7	chr9:136660880	C	NA	12	0	12	36.917	3.397	0	0	0	11	0	VAV2	intronic	NA
GBM_P_T1--9	chr9:136660880	C	NA	22	0	22	36.818	3.096	0	0	0	21	0	VAV2	intronic	NA
GBM_P_T1--GL	chr9:136660880	C	NA	36	0	36	34.528	5.124	0	0	0	31	0	VAV2	intronic	NA
GBM_P_T1--10	chr9:140120317	C	NA	26	0	26	35.615	6.747	0	0	0	24	0	C9orf169	exonic	stopgain_SNV
GBM_P_T1--11	chr9:140120317	C	NA	32	0	32	35.062	6.763	0	0	0	28	0	C9orf169	exonic	stopgain_SNV
GBM_P_T1--5	chr9:140120317	C	NA	38	0	38	37.105	2.024	0	0	0	38	0	C9orf169	exonic	stopgain_SNV
GBM_P_T1--7	chr9:140120317	C	NA	21	0	21	38.381	1.936	0	0	0	21	0	C9orf169	exonic	stopgain_SNV
GBM_P_T1--9	chr9:140120317	C	T	26	0.154	22	37.455	1.969	4	37.750	1.500	22	4	C9orf169	exonic	stopgain_SNV
GBM_P_T1--GL	chr9:140120317	C	NA	55	0	55	35.727	3.913	0	0	0	50	0	C9orf169	exonic	stopgain_SNV
GBM_P_T1--10	chr9:34096706	C	NA	22	0	22	37.091	3.235	0	0	0	21	0	DCAF12	intronic	NA
GBM_P_T1--11	chr9:34096706	C	NA	39	0	39	37.256	2.663	0	0	0	38	0	DCAF12	intronic	NA
GBM_P_T1--5	chr9:34096706	C	A	45	0.022	44	37.659	2.477	1	37.000	0.000	44	1	DCAF12	intronic	NA
GBM_P_T1--7	chr9:34096706	C	NA	26	0	26	38.038	2.341	0	0	0	26	0	DCAF12	intronic	NA
GBM_P_T1--9	chr9:34096706	C	A	32	0.125	28	36.643	6.684	4	39.250	1.500	26	4	DCAF12	intronic	NA
GBM_P_T1--GL	chr9:34096706	C	NA	44	0	44	37.750	2.754	0	0	0	44	0	DCAF12	intronic	NA
GBM_P_T1--10	chr9:5231708	G	A	32	0.125	28	35.750	5.448	4	36.000	2.000	25	4	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--11	chr9:5231708	G	A	26	0.154	22	37.227	2.448	4	36.750	2.872	22	4	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--5	chr9:5231708	G	A	27	0.074	25	35.680	5.202	2	38.500	2.121	23	2	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--7	chr9:5231708	G	A	17	0.059	16	37.312	1.662	1	37.000	0.000	16	1	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--9	chr9:5231708	G	A	27	0.185	22	36.727	2.815	5	37.400	2.881	21	5	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chr9:5231708	G	NA	34	0	34	37.000	2.256	0	0	0	34	0	INSL4	exonic	nonsynonymous_SNV
GBM_P_T1--10	chrX:107160840	C	T	137	0.387	84	36.298	5.503	53	37.151	3.066	80	52	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--11	chrX:107160840	C	T	83	0.434	47	37.319	2.994	36	35.667	4.940	45	33	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--5	chrX:107160840	C	T	114	0.360	73	37.945	2.624	41	37.220	4.746	72	39	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--7	chrX:107160840	C	T	55	0.327	35	38.171	2.915	18	36.056	3.208	34	17	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--9	chrX:107160840	C	T	111	0.432	63	37.476	3.918	48	36.500	3.644	61	46	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chrX:107160840	C	NA	120	0	120	36.658	5.415	0	0	0	113	0	MID2	exonic	nonsynonymous_SNV
GBM_P_T1--10	chrX:140993658	G	A	155	0.135	134	37.127	3.404	21	36.524	2.839	132	21	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--11	chrX:140993658	G	A	74	0.297	52	36.981	4.617	22	33.318	8.632	49	17	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--5	chrX:140993658	G	A	94	0.436	53	37.755	4.052	41	35.878	6.173	51	36	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--7	chrX:140993658	G	A	50	0.300	35	36.286	6.061	15	36.333	4.967	32	14	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--9	chrX:140993658	G	A	99	0.394	60	37.217	3.528	39	35.949	4.877	57	34	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--GL	chrX:140993658	G	NA	142	0	142	37.197	3.205	0	0	0	139	0	MAGEC1	exonic	synonymous_SNV
GBM_P_T1--10	chrX:32503296	A	NA	59	0	59	37.644	4.114	0	0	0	53	0	DMD	intronic	NA
GBM_P_T1--11	chrX:32503296	A	NA	43	0	43	37.674	4.597	0	0	0	41	0	DMD	intronic	NA
GBM_P_T1--5	chrX:32503296	A	G	42	0.024	41	37.415	6.062	1	40.000	0.000	38	1	DMD	intronic	NA
GBM_P_T1--7	chrX:32503296	A	G	16	0.188	13	35.692	9.621	3	35.667	2.309	11	3	DMD	intronic	NA
GBM_P_T1--9	chrX:32503296	A	NA	27	0	27	38.222	3.651	0	0	0	25	0	DMD	intronic	NA
GBM_P_T1--GL	chrX:32503296	A	NA	51	0	51	37.706	3.629	0	0	0	47	0	DMD	intronic	NA
GBM_P_T1--10	chrX:41333967	C	NA	27	0	27	36.111	2.607	0	0	0	26	0	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--11	chrX:41333967	C	NA	19	0	19	33.632	4.387	0	0	0	16	0	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--5	chrX:41333967	C	NA	18	0	18	36.000	2.376	0	0	0	18	0	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--7	chrX:41333967	C	A	23	0.174	19	36.474	2.988	4	34.500	5.000	19	3	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--9	chrX:41333967	C	NA	18	0	18	34.556	6.070	0	0	0	15	0	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--GL	chrX:41333967	C	NA	53	0	53	33.358	5.962	0	0	0	44	0	NYX	exonic	nonsynonymous_SNV
GBM_P_T1--10	chrX:44919480	C	NA	25	0	25	35.920	5.330	0	0	0	23	0	KDM6A	intronic	NA
GBM_P_T1--11	chrX:44919480	C	NA	33	0	33	36.848	2.551	0	0	0	33	0	KDM6A	intronic	NA
GBM_P_T1--5	chrX:44919480	C	NA	24	0	24	36.833	5.198	0	0	0	23	0	KDM6A	intronic	NA
GBM_P_T1--7	chrX:44919480	C	A	17	0.235	13	37.000	2.646	4	37.000	0.000	13	4	KDM6A	intronic	NA
GBM_P_T1--9	chrX:44919480	C	NA	16	0	16	36.375	3.442	0	0	0	15	0	KDM6A	intronic	NA
GBM_P_T1--GL	chrX:44919480	C	NA	34	0	34	37.588	2.204	0	0	0	34	0	KDM6A	intronic	NA
GBM_P_T1--10	chrX:48374624	C	NA	17	0	17	35.706	2.519	0	0	0	17	0	PORCN	intronic	NA
GBM_P_T1--11	chrX:48374624	C	NA	20	0	20	34.500	5.880	0	0	0	18	0	PORCN	intronic	NA
GBM_P_T1--5	chrX:48374624	C	NA	16	0	16	32.250	9.154	0	0	0	13	0	PORCN	intronic	NA
GBM_P_T1--7	chrX:48374624	C	NA	12	0	12	34.500	5.143	0	0	0	10	0	PORCN	intronic	NA
GBM_P_T1--9	chrX:48374624	C	A	11	0.273	8	34.750	3.615	3	38.000	1.732	7	3	PORCN	intronic	NA
GBM_P_T1--GL	chrX:48374624	C	NA	35	0	35	33.314	7.243	0	0	0	28	0	PORCN	intronic	NA
MB_Group3_T1--1	10:112645078	C	G	24	0.917	2	39.000	2.828	22	38.000	8.541	2	20	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--2	10:112645078	C	G	39	0.205	31	38.065	7.023	8	39.125	3.091	30	8	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--3	10:112645078	C	G	19	0.579	8	34.750	13.328	11	39.364	2.420	7	11	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--4	10:112645078	C	G	12	1.000	0	0.000	0.000	12	39.250	2.301	0	12	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--5	10:112645078	C	G	15	0.400	9	37.111	1.537	6	38.167	2.858	9	6	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--6	10:112645078	C	G	11	1.000	0	0.000	0.000	11	37.091	11.700	0	10	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--7	10:112645078	C	NA	21	0	21	39.714	2.239	0	0	0	21	0	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--8	10:112645078	C	G	24	1.000	0	0.000	0.000	24	38.917	3.450	0	23	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--9	10:112645078	C	G	13	0.692	4	40.750	0.500	9	36.889	5.754	4	7	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	10:112645078	C	NA	33	0	33	38.606	4.286	0	0	0	32	0	PDCD4	exonic	nonsynonymous_SNV
MB_Group3_T1--1	10:125505174	T	NA	30	0	4	34.750	3.304	0	0	0	4	0	CPXM2	UTR3	NA
MB_Group3_T1--2	10:125505174	T	A	26	0.038	5	35.800	2.280	1	33.000	0.000	5	1	CPXM2	UTR3	NA
MB_Group3_T1--3	10:125505174	T	A	24	0.125	6	36.500	2.588	3	28.333	3.786	6	2	CPXM2	UTR3	NA
MB_Group3_T1--4	10:125505174	T	NA	18	0	3	35.000	2.646	0	0	0	3	0	CPXM2	UTR3	NA
MB_Group3_T1--5	10:125505174	T	NA	17	0	7	31.429	13.315	0	0	0	6	0	CPXM2	UTR3	NA
MB_Group3_T1--6	10:125505174	T	A	26	0.077	4	37.250	2.062	2	36.000	1.414	4	2	CPXM2	UTR3	NA
MB_Group3_T1--7	10:125505174	T	A	20	0.100	3	25.333	20.207	2	33.000	0.000	2	2	CPXM2	UTR3	NA
MB_Group3_T1--8	10:125505174	T	NA	25	0	9	35.444	1.014	0	0	0	9	0	CPXM2	UTR3	NA
MB_Group3_T1--9	10:125505174	T	NA	25	0	7	34.571	4.117	0	0	0	6	0	CPXM2	UTR3	NA
MB_Group3_T1--GL	10:125505174	T	NA	47	0	36	34.722	8.785	0	0	0	33	0	CPXM2	UTR3	NA
MB_Group3_T1--1	10:38246061	C	NA	24	0	24	39.167	2.548	0	0	0	24	0	ZNF25	intronic	NA
MB_Group3_T1--2	10:38246061	C	NA	18	0	18	39.556	2.007	0	0	0	18	0	ZNF25	intronic	NA
MB_Group3_T1--3	10:38246061	C	NA	37	0	37	38.946	3.858	0	0	0	36	0	ZNF25	intronic	NA
MB_Group3_T1--4	10:38246061	C	NA	25	0	25	38.000	4.425	0	0	0	24	0	ZNF25	intronic	NA
MB_Group3_T1--5	10:38246061	C	NA	16	0	16	38.875	2.156	0	0	0	16	0	ZNF25	intronic	NA
MB_Group3_T1--6	10:38246061	C	NA	38	0	38	39.053	3.624	0	0	0	37	0	ZNF25	intronic	NA
MB_Group3_T1--7	10:38246061	C	NA	12	0	12	39.417	1.832	0	0	0	12	0	ZNF25	intronic	NA
MB_Group3_T1--8	10:38246061	C	NA	22	0	22	39.045	3.093	0	0	0	22	0	ZNF25	intronic	NA
MB_Group3_T1--9	10:38246061	C	A	19	0.158	16	39.188	3.728	3	41.000	0.000	15	3	ZNF25	intronic	NA
MB_Group3_T1--GL	10:38246061	C	NA	72	0	72	38.347	3.357	0	0	0	71	0	ZNF25	intronic	NA
MB_Group3_T1--1	10:50918011	G	C	23	0.087	21	33.143	10.841	2	40.000	1.414	19	2	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--2	10:50918011	G	C	27	0.185	22	33.500	10.070	5	36.000	4.528	19	4	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--3	10:50918011	G	C	47	0.085	43	35.070	6.397	4	35.250	1.500	40	4	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--4	10:50918011	G	C	19	0.105	17	35.824	4.019	2	33.500	2.121	16	2	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--5	10:50918011	G	NA	25	0	22	34.864	8.002	0	0	0	20	0	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--6	10:50918011	G	C	29	0.069	27	35.704	3.550	2	38.000	1.414	25	2	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--7	10:50918011	G	C	29	0.069	27	34.667	6.457	2	31.000	11.314	23	1	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--8	10:50918011	G	C	27	0.111	24	34.917	6.858	3	36.000	5.568	21	3	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--9	10:50918011	G	C	15	0.067	14	31.286	9.864	1	37.000	0.000	10	1	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--GL	10:50918011	G	NA	62	0	62	34.532	7.472	0	0	0	56	0	C10orf53(dist=1055),OGDHL(dist=24676)	intergenic	NA
MB_Group3_T1--1	10:75889760	G	NA	59	0	58	37.276	3.689	0	0	0	56	0	AP3M1	intronic	NA
MB_Group3_T1--2	10:75889760	G	A	52	0.058	48	37.021	4.923	3	33.667	4.041	47	2	AP3M1	intronic	NA
MB_Group3_T1--3	10:75889760	G	NA	47	0	47	36.234	7.437	0	0	0	43	0	AP3M1	intronic	NA
MB_Group3_T1--4	10:75889760	G	A	47	0.043	45	35.400	6.880	2	25.000	16.971	40	1	AP3M1	intronic	NA
MB_Group3_T1--5	10:75889760	G	A	31	0.194	25	35.560	7.422	6	33.333	4.320	22	5	AP3M1	intronic	NA
MB_Group3_T1--6	10:75889760	G	A	42	0.071	39	35.051	4.524	3	35.333	1.155	34	3	AP3M1	intronic	NA
MB_Group3_T1--7	10:75889760	G	A	39	0.103	35	36.086	6.595	4	37.750	2.217	31	4	AP3M1	intronic	NA
MB_Group3_T1--8	10:75889760	G	A	43	0.093	38	35.211	8.191	4	27.750	17.173	33	3	AP3M1	intronic	NA
MB_Group3_T1--9	10:75889760	G	NA	26	0	26	37.731	3.341	0	0	0	25	0	AP3M1	intronic	NA
MB_Group3_T1--GL	10:75889760	G	NA	101	0	97	37.216	4.449	0	0	0	92	0	AP3M1	intronic	NA
MB_Group3_T1--1	1:109271234	A	NA	45	0	45	37.956	6.274	0	0	0	43	0	FNDC7	intronic	NA
MB_Group3_T1--2	1:109271234	A	T	50	0.020	49	38.102	3.324	1	41.000	0.000	48	1	FNDC7	intronic	NA
MB_Group3_T1--3	1:109271234	A	NA	44	0	44	37.568	6.582	0	0	0	41	0	FNDC7	intronic	NA
MB_Group3_T1--4	1:109271234	A	T	35	0.114	31	38.516	2.999	4	38.750	1.708	30	4	FNDC7	intronic	NA
MB_Group3_T1--5	1:109271234	A	NA	41	0	41	37.756	4.300	0	0	0	40	0	FNDC7	intronic	NA
MB_Group3_T1--6	1:109271234	A	T	40	0.325	27	38.074	2.526	13	36.231	10.592	27	12	FNDC7	intronic	NA
MB_Group3_T1--7	1:109271234	A	NA	45	0	45	37.022	6.344	0	0	0	42	0	FNDC7	intronic	NA
MB_Group3_T1--8	1:109271234	A	NA	26	0	26	38.769	3.338	0	0	0	25	0	FNDC7	intronic	NA
MB_Group3_T1--9	1:109271234	A	T	23	0.391	14	39.857	1.460	9	37.222	3.866	14	9	FNDC7	intronic	NA
MB_Group3_T1--GL	1:109271234	A	NA	47	0	47	38.426	3.406	0	0	0	45	0	FNDC7	intronic	NA
MB_Group3_T1--1	1:109818158	C	T	60	0.133	52	36.942	4.421	8	35.875	2.416	49	8	CELSR2	UTR3	NA
MB_Group3_T1--2	1:109818158	C	T	49	0.082	45	36.689	7.304	4	35.750	1.500	41	4	CELSR2	UTR3	NA
MB_Group3_T1--3	1:109818158	C	T	64	0.156	54	37.926	3.942	10	34.000	5.925	52	9	CELSR2	UTR3	NA
MB_Group3_T1--4	1:109818158	C	T	35	0.171	29	38.379	3.005	6	34.833	2.787	29	6	CELSR2	UTR3	NA
MB_Group3_T1--5	1:109818158	C	T	53	0.038	51	38.059	3.246	2	32.500	6.364	51	1	CELSR2	UTR3	NA
MB_Group3_T1--6	1:109818158	C	T	66	0.076	61	37.574	6.081	5	36.800	1.483	58	5	CELSR2	UTR3	NA
MB_Group3_T1--7	1:109818158	C	T	45	0.111	40	38.975	2.516	5	34.200	2.168	39	5	CELSR2	UTR3	NA
MB_Group3_T1--8	1:109818158	C	T	40	0.175	33	38.364	3.872	7	35.714	2.215	32	7	CELSR2	UTR3	NA
MB_Group3_T1--9	1:109818158	C	NA	34	0	34	37.971	3.973	0	0	0	33	0	CELSR2	UTR3	NA
MB_Group3_T1--GL	1:109818158	C	NA	63	0	62	37.726	5.617	0	0	0	60	0	CELSR2	UTR3	NA
MB_Group3_T1--1	11:1093295	C	NA	25	0	24	36.792	3.706	0	0	0	24	0	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--2	11:1093295	C	T	28	0.143	24	34.292	8.421	4	22.750	14.705	21	2	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--3	11:1093295	C	NA	31	0	31	31.161	13.407	0	0	0	25	0	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--4	11:1093295	C	T	17	0.059	15	33.867	6.081	1	37.000	0.000	13	1	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--5	11:1093295	C	T	21	0.095	19	36.474	4.982	2	33.000	2.828	17	2	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--6	11:1093295	C	NA	41	0	40	34.525	7.762	0	0	0	36	0	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--7	11:1093295	C	T	37	0.081	34	34.882	7.364	3	36.667	5.132	30	3	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--8	11:1093295	C	T	35	0.257	26	35.808	4.391	9	33.444	10.236	24	8	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--9	11:1093295	C	T	25	0.040	24	34.458	8.959	1	39.000	0.000	21	1	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	11:1093295	C	NA	46	0	45	34.067	8.269	0	0	0	39	0	MUC2	exonic	nonsynonymous_SNV
MB_Group3_T1--1	1:118168096	C	A	47	0.426	26	38.615	3.556	20	38.700	2.638	25	20	FAM46C	UTR3	NA
MB_Group3_T1--2	1:118168096	C	A	55	0.436	31	37.903	3.477	24	36.750	7.182	31	22	FAM46C	UTR3	NA
MB_Group3_T1--3	1:118168096	C	A	30	0.367	19	37.895	3.381	11	37.364	7.243	19	10	FAM46C	UTR3	NA
MB_Group3_T1--4	1:118168096	C	A	38	0.421	22	39.091	1.849	16	38.812	1.721	22	16	FAM46C	UTR3	NA
MB_Group3_T1--5	1:118168096	C	A	43	0.326	29	38.069	5.298	14	34.786	10.131	27	12	FAM46C	UTR3	NA
MB_Group3_T1--6	1:118168096	C	A	43	0.512	21	38.857	2.308	22	38.636	3.812	21	21	FAM46C	UTR3	NA
MB_Group3_T1--7	1:118168096	C	A	38	0.526	18	39.444	2.455	20	35.850	8.665	18	18	FAM46C	UTR3	NA
MB_Group3_T1--8	1:118168096	C	A	45	0.533	21	39.524	1.436	24	37.042	4.982	21	23	FAM46C	UTR3	NA
MB_Group3_T1--9	1:118168096	C	A	26	0.500	13	38.923	2.139	13	35.923	10.388	13	12	FAM46C	UTR3	NA
MB_Group3_T1--GL	1:118168096	C	NA	43	0	43	37.930	4.345	0	0	0	41	0	FAM46C	UTR3	NA
MB_Group3_T1--1	11:4159780	T	A	53	0.019	52	34.327	11.132	1	34.000	0.000	46	1	RRM1	UTR3	NA
MB_Group3_T1--2	11:4159780	T	A	45	0.044	43	36.023	8.755	2	32.500	2.121	39	2	RRM1	UTR3	NA
MB_Group3_T1--3	11:4159780	T	A	58	0.069	54	37.574	3.795	4	31.750	1.500	50	4	RRM1	UTR3	NA
MB_Group3_T1--4	11:4159780	T	A	44	0.068	41	36.780	5.145	3	34.000	0.000	38	3	RRM1	UTR3	NA
MB_Group3_T1--5	11:4159780	T	A	52	0.038	50	36.620	6.963	2	33.500	0.707	47	2	RRM1	UTR3	NA
MB_Group3_T1--6	11:4159780	T	A	54	0.056	51	36.471	7.880	3	32.000	1.732	47	3	RRM1	UTR3	NA
MB_Group3_T1--7	11:4159780	T	A	41	0.024	40	37.500	5.827	1	31.000	0.000	38	1	RRM1	UTR3	NA
MB_Group3_T1--8	11:4159780	T	A	43	0.023	42	38.333	2.985	1	34.000	0.000	41	1	RRM1	UTR3	NA
MB_Group3_T1--9	11:4159780	T	A	35	0.171	29	36.931	4.276	6	33.167	1.722	27	6	RRM1	UTR3	NA
MB_Group3_T1--GL	11:4159780	T	NA	68	0	68	37.147	5.597	0	0	0	65	0	RRM1	UTR3	NA
MB_Group3_T1--1	1:152882157	G	T	129	0.496	65	36.831	5.667	64	36.641	3.574	62	62	IVL	intronic	NA
MB_Group3_T1--2	1:152882157	G	T	146	0.055	138	36.116	7.125	8	38.000	3.625	124	8	IVL	intronic	NA
MB_Group3_T1--3	1:152882157	G	T	133	0.218	104	35.529	8.052	29	36.759	3.181	92	28	IVL	intronic	NA
MB_Group3_T1--4	1:152882157	G	T	91	0.418	53	35.132	8.314	38	36.711	4.948	45	37	IVL	intronic	NA
MB_Group3_T1--5	1:152882157	G	T	109	0.092	98	37.500	4.258	10	37.900	3.814	91	10	IVL	intronic	NA
MB_Group3_T1--6	1:152882157	G	T	126	0.476	66	36.091	8.188	60	37.583	3.929	62	56	IVL	intronic	NA
MB_Group3_T1--7	1:152882157	G	NA	110	0	110	37.427	6.392	0	0	0	106	0	IVL	intronic	NA
MB_Group3_T1--8	1:152882157	G	T	118	0.441	66	36.909	7.022	52	36.923	5.701	62	51	IVL	intronic	NA
MB_Group3_T1--9	1:152882157	G	T	82	0.354	53	37.736	4.297	29	37.172	3.013	51	29	IVL	intronic	NA
MB_Group3_T1--GL	1:152882157	G	NA	131	0	130	37.369	5.496	0	0	0	126	0	IVL	intronic	NA
MB_Group3_T1--1	1:154554965	G	NA	26	0	26	32.346	10.075	0	0	0	20	0	ADAR	UTR3	NA
MB_Group3_T1--2	1:154554965	G	A	44	0.136	38	34.947	6.889	6	29.500	13.472	35	5	ADAR	UTR3	NA
MB_Group3_T1--3	1:154554965	G	NA	44	0	42	34.595	7.385	0	0	0	38	0	ADAR	UTR3	NA
MB_Group3_T1--4	1:154554965	G	A	47	0.043	45	32.600	8.055	2	35.000	0.000	36	2	ADAR	UTR3	NA
MB_Group3_T1--5	1:154554965	G	A	26	0.154	22	33.636	5.132	4	33.500	2.380	18	4	ADAR	UTR3	NA
MB_Group3_T1--6	1:154554965	G	A	22	0.136	19	36.000	2.981	3	30.667	5.859	19	2	ADAR	UTR3	NA
MB_Group3_T1--7	1:154554965	G	A	28	0.143	24	34.333	5.858	4	33.250	2.872	22	3	ADAR	UTR3	NA
MB_Group3_T1--8	1:154554965	G	A	43	0.140	37	34.838	6.427	6	34.667	0.816	33	6	ADAR	UTR3	NA
MB_Group3_T1--9	1:154554965	G	A	22	0.182	18	32.444	11.372	4	33.250	1.708	16	4	ADAR	UTR3	NA
MB_Group3_T1--GL	1:154554965	G	NA	48	0	48	33.854	7.973	0	0	0	43	0	ADAR	UTR3	NA
MB_Group3_T1--1	1:159175008	T	C	19	0.053	18	34.167	9.313	1	34.000	0.000	15	1	DARC	intronic	NA
MB_Group3_T1--2	1:159175008	T	C	19	0.105	17	36.294	9.259	2	37.000	4.243	16	2	DARC	intronic	NA
MB_Group3_T1--3	1:159175008	T	C	28	0.107	25	35.080	8.636	3	32.333	8.963	23	2	DARC	intronic	NA
MB_Group3_T1--4	1:159175008	T	NA	27	0	27	35.407	6.247	0	0	0	23	0	DARC	intronic	NA
MB_Group3_T1--5	1:159175008	T	C	28	0.071	26	37.192	3.622	2	35.000	1.414	25	2	DARC	intronic	NA
MB_Group3_T1--6	1:159175008	T	C	23	0.217	18	39.333	2.849	5	33.800	4.438	18	4	DARC	intronic	NA
MB_Group3_T1--7	1:159175008	T	C	18	0.056	17	35.412	8.209	1	37.000	0.000	15	1	DARC	intronic	NA
MB_Group3_T1--8	1:159175008	T	C	23	0.087	21	37.095	3.859	2	35.500	2.121	20	2	DARC	intronic	NA
MB_Group3_T1--9	1:159175008	T	C	14	0.071	13	33.077	6.714	1	37.000	0.000	9	1	DARC	intronic	NA
MB_Group3_T1--GL	1:159175008	T	NA	35	0	35	37.171	4.624	0	0	0	33	0	DARC	intronic	NA
MB_Group3_T1--1	1:203744527	A	C	25	0.280	18	29.944	14.330	7	35.000	1.414	12	7	LAX1	UTR3	NA
MB_Group3_T1--2	1:203744527	A	C	12	0.083	11	37.455	2.945	1	37.000	0.000	11	1	LAX1	UTR3	NA
MB_Group3_T1--3	1:203744527	A	C	27	0.148	23	36.304	8.031	4	35.750	1.500	22	4	LAX1	UTR3	NA
MB_Group3_T1--4	1:203744527	A	NA	18	0	18	38.056	3.244	0	0	0	18	0	LAX1	UTR3	NA
MB_Group3_T1--5	1:203744527	A	C	13	0.154	11	37.818	3.488	2	34.000	0.000	11	2	LAX1	UTR3	NA
MB_Group3_T1--6	1:203744527	A	C	26	0.115	23	37.957	3.496	3	33.000	3.464	22	3	LAX1	UTR3	NA
MB_Group3_T1--7	1:203744527	A	C	26	0.192	21	35.667	8.381	5	30.800	8.468	19	4	LAX1	UTR3	NA
MB_Group3_T1--8	1:203744527	A	NA	20	0	20	39.200	2.016	0	0	0	20	0	LAX1	UTR3	NA
MB_Group3_T1--9	1:203744527	A	NA	21	0	20	36.250	8.559	0	0	0	19	0	LAX1	UTR3	NA
MB_Group3_T1--GL	1:203744527	A	NA	43	0	43	37.256	6.122	0	0	0	42	0	LAX1	UTR3	NA
MB_Group3_T1--1	12:105198124	T	A	46	0.130	40	37.825	3.829	6	33.500	3.209	39	6	SLC41A2	UTR3	NA
MB_Group3_T1--2	12:105198124	T	A	58	0.086	53	35.698	7.582	5	25.400	13.315	46	3	SLC41A2	UTR3	NA
MB_Group3_T1--3	12:105198124	T	A	39	0.051	37	36.297	5.695	2	36.000	4.243	32	2	SLC41A2	UTR3	NA
MB_Group3_T1--4	12:105198124	T	A	35	0.171	29	39.103	3.040	6	20.833	15.817	28	2	SLC41A2	UTR3	NA
MB_Group3_T1--5	12:105198124	T	A	26	0.077	24	36.417	4.671	2	37.000	0.000	22	2	SLC41A2	UTR3	NA
MB_Group3_T1--6	12:105198124	T	A	31	0.065	29	36.931	4.511	2	38.000	1.414	27	2	SLC41A2	UTR3	NA
MB_Group3_T1--7	12:105198124	T	A	29	0.241	22	37.955	4.180	7	30.286	2.928	21	4	SLC41A2	UTR3	NA
MB_Group3_T1--8	12:105198124	T	A	51	0.059	48	38.292	2.484	3	39.000	0.000	48	3	SLC41A2	UTR3	NA
MB_Group3_T1--9	12:105198124	T	A	30	0.033	29	35.345	8.905	1	35.000	0.000	25	1	SLC41A2	UTR3	NA
MB_Group3_T1--GL	12:105198124	T	NA	54	0	53	37.057	6.068	0	0	0	50	0	SLC41A2	UTR3	NA
MB_Group3_T1--1	12:123832714	A	G	49	0.122	43	37.860	3.752	6	35.000	1.673	42	6	SBNO1	intronic	NA
MB_Group3_T1--2	12:123832714	A	G	37	0.054	35	38.514	3.776	2	29.500	10.607	33	1	SBNO1	intronic	NA
MB_Group3_T1--3	12:123832714	A	G	69	0.014	68	37.941	5.316	1	34.000	0.000	65	1	SBNO1	intronic	NA
MB_Group3_T1--4	12:123832714	A	G	45	0.111	40	37.950	6.775	5	34.600	1.342	37	5	SBNO1	intronic	NA
MB_Group3_T1--5	12:123832714	A	G	31	0.032	30	38.700	4.928	1	37.000	0.000	29	1	SBNO1	intronic	NA
MB_Group3_T1--6	12:123832714	A	G	59	0.051	56	39.339	2.510	3	34.000	3.000	55	3	SBNO1	intronic	NA
MB_Group3_T1--7	12:123832714	A	G	59	0.102	53	38.528	6.053	6	34.667	2.658	50	6	SBNO1	intronic	NA
MB_Group3_T1--8	12:123832714	A	G	68	0.191	55	39.018	3.112	13	34.000	1.225	54	13	SBNO1	intronic	NA
MB_Group3_T1--9	12:123832714	A	G	32	0.125	28	37.643	7.757	4	32.000	4.690	26	3	SBNO1	intronic	NA
MB_Group3_T1--GL	12:123832714	A	NA	80	0	80	39.625	1.753	0	0	0	80	0	SBNO1	intronic	NA
MB_Group3_T1--1	12:1675852	C	NA	138	0	137	35.248	5.308	0	0	0	124	0	FBXL14	UTR3	NA
MB_Group3_T1--2	12:1675852	C	T	99	0.101	89	34.202	7.759	10	34.000	4.830	76	8	FBXL14	UTR3	NA
MB_Group3_T1--3	12:1675852	C	T	141	0.092	127	34.228	8.842	13	27.231	9.364	110	7	FBXL14	UTR3	NA
MB_Group3_T1--4	12:1675852	C	T	108	0.046	100	35.700	6.395	5	30.000	15.764	92	4	FBXL14	UTR3	NA
MB_Group3_T1--5	12:1675852	C	NA	50	0	49	34.531	7.652	0	0	0	45	0	FBXL14	UTR3	NA
MB_Group3_T1--6	12:1675852	C	NA	117	0	117	35.761	6.676	0	0	0	109	0	FBXL14	UTR3	NA
MB_Group3_T1--7	12:1675852	C	T	88	0.557	38	36.342	4.564	49	28.163	10.288	35	33	FBXL14	UTR3	NA
MB_Group3_T1--8	12:1675852	C	NA	101	0	101	35.406	6.334	0	0	0	93	0	FBXL14	UTR3	NA
MB_Group3_T1--9	12:1675852	C	NA	67	0	67	35.478	5.891	0	0	0	61	0	FBXL14	UTR3	NA
MB_Group3_T1--GL	12:1675852	C	NA	150	0	150	33.347	9.341	0	0	0	128	0	FBXL14	UTR3	NA
MB_Group3_T1--1	14:65542840	G	NA	44	0	44	36.523	4.737	0	0	0	40	0	MAX	UTR3	NA
MB_Group3_T1--2	14:65542840	G	A	59	0.136	51	36.961	6.390	8	36.250	2.866	48	8	MAX	UTR3	NA
MB_Group3_T1--3	14:65542840	G	NA	91	0	91	36.022	6.610	0	0	0	84	0	MAX	UTR3	NA
MB_Group3_T1--4	14:65542840	G	NA	76	0	75	35.427	5.871	0	0	0	68	0	MAX	UTR3	NA
MB_Group3_T1--5	14:65542840	G	A	41	0.098	37	34.432	8.846	4	35.750	3.594	32	4	MAX	UTR3	NA
MB_Group3_T1--6	14:65542840	G	NA	48	0	48	37.208	3.952	0	0	0	46	0	MAX	UTR3	NA
MB_Group3_T1--7	14:65542840	G	NA	48	0	46	36.761	4.347	0	0	0	43	0	MAX	UTR3	NA
MB_Group3_T1--8	14:65542840	G	NA	51	0	51	35.804	7.510	0	0	0	49	0	MAX	UTR3	NA
MB_Group3_T1--9	14:65542840	G	NA	34	0	34	35.235	9.079	0	0	0	31	0	MAX	UTR3	NA
MB_Group3_T1--GL	14:65542840	G	NA	74	0	74	33.973	9.523	0	0	0	66	0	MAX	UTR3	NA
MB_Group3_T1--1	14:88789460	C	G	36	0.556	16	35.938	3.768	20	35.000	4.472	15	17	KCNK10	UTR5	NA
MB_Group3_T1--2	14:88789460	C	G	62	0.516	30	33.667	8.880	32	32.531	7.094	24	28	KCNK10	UTR5	NA
MB_Group3_T1--3	14:88789460	C	G	52	0.423	30	29.733	12.199	22	36.500	5.143	23	20	KCNK10	UTR5	NA
MB_Group3_T1--4	14:88789460	C	G	49	0.490	25	34.760	6.722	24	33.917	4.977	23	20	KCNK10	UTR5	NA
MB_Group3_T1--5	14:88789460	C	G	39	0.436	22	37.273	4.569	17	32.706	10.403	20	13	KCNK10	UTR5	NA
MB_Group3_T1--6	14:88789460	C	G	40	0.575	17	34.882	7.769	23	35.130	4.770	16	21	KCNK10	UTR5	NA
MB_Group3_T1--7	14:88789460	C	G	40	0.625	15	33.933	10.074	25	36.760	4.371	12	24	KCNK10	UTR5	NA
MB_Group3_T1--8	14:88789460	C	G	61	0.557	27	34.481	6.459	34	35.029	7.457	24	30	KCNK10	UTR5	NA
MB_Group3_T1--9	14:88789460	C	G	28	0.536	13	37.154	3.436	15	33.667	9.348	13	14	KCNK10	UTR5	NA
MB_Group3_T1--GL	14:88789460	C	NA	49	0	49	33.980	10.276	0	0	0	44	0	KCNK10	UTR5	NA
MB_Group3_T1--1	1:6170425	G	C	30	0.100	4	38.500	3.697	3	35.333	1.528	4	3	CHD5	intronic	NA
MB_Group3_T1--2	1:6170425	G	NA	21	0	1	37.000	0.000	0	0	0	1	0	CHD5	intronic	NA
MB_Group3_T1--3	1:6170425	G	C	42	0.048	3	34.667	4.163	2	35.000	1.414	3	2	CHD5	intronic	NA
MB_Group3_T1--4	1:6170425	G	NA	17	0	1	35.000	0.000	0	0	0	1	0	CHD5	intronic	NA
MB_Group3_T1--5	1:6170425	G	NA	19	0	0	0.000	0.000	0	0	0	0	0	CHD5	intronic	NA
MB_Group3_T1--6	1:6170425	G	C	21	0.048	0	0.000	0.000	1	35.000	0.000	0	1	CHD5	intronic	NA
MB_Group3_T1--7	1:6170425	G	C	26	0.077	0	0.000	0.000	2	36.000	0.000	0	2	CHD5	intronic	NA
MB_Group3_T1--8	1:6170425	G	C	16	0.125	0	0.000	0.000	2	35.000	1.414	0	2	CHD5	intronic	NA
MB_Group3_T1--9	1:6170425	G	NA	18	0	0	0.000	0.000	0	0	0	0	0	CHD5	intronic	NA
MB_Group3_T1--GL	1:6170425	G	NA	68	0	37	36.054	8.941	0	0	0	34	0	CHD5	intronic	NA
MB_Group3_T1--1	16:88071507	C	T	38	0.474	20	37.750	3.160	18	32.667	4.393	19	14	BANP	intronic	NA
MB_Group3_T1--2	16:88071507	C	T	31	0.581	13	32.231	11.271	18	32.722	6.506	10	17	BANP	intronic	NA
MB_Group3_T1--3	16:88071507	C	T	38	0.368	24	33.833	10.205	14	32.714	7.405	20	12	BANP	intronic	NA
MB_Group3_T1--4	16:88071507	C	T	50	0.360	31	36.484	4.582	18	32.833	4.301	29	16	BANP	intronic	NA
MB_Group3_T1--5	16:88071507	C	T	28	0.464	15	36.267	4.480	13	33.231	3.655	14	11	BANP	intronic	NA
MB_Group3_T1--6	16:88071507	C	T	54	0.426	30	36.600	4.980	23	29.826	9.731	26	17	BANP	intronic	NA
MB_Group3_T1--7	16:88071507	C	T	39	0.333	26	34.192	9.704	13	32.077	4.555	23	10	BANP	intronic	NA
MB_Group3_T1--8	16:88071507	C	T	51	0.431	29	35.448	7.529	22	31.773	7.464	27	17	BANP	intronic	NA
MB_Group3_T1--9	16:88071507	C	T	20	0.700	6	31.833	14.945	14	30.500	4.433	5	9	BANP	intronic	NA
MB_Group3_T1--GL	16:88071507	C	NA	59	0	59	36.458	4.714	0	0	0	55	0	BANP	intronic	NA
MB_Group3_T1--1	16:8948868	G	C	26	0.154	22	23.000	12.608	4	34.000	0.816	10	4	CARHSP1	UTR3	NA
MB_Group3_T1--2	16:8948868	G	C	21	0.048	20	28.350	12.317	1	34.000	0.000	13	1	CARHSP1	UTR3	NA
MB_Group3_T1--3	16:8948868	G	NA	24	0	24	29.375	9.877	0	0	0	18	0	CARHSP1	UTR3	NA
MB_Group3_T1--4	16:8948868	G	NA	24	0	24	29.750	10.364	0	0	0	17	0	CARHSP1	UTR3	NA
MB_Group3_T1--5	16:8948868	G	NA	11	0	11	25.545	12.786	0	0	0	6	0	CARHSP1	UTR3	NA
MB_Group3_T1--6	16:8948868	G	NA	27	0	27	31.259	9.690	0	0	0	23	0	CARHSP1	UTR3	NA
MB_Group3_T1--7	16:8948868	G	NA	21	0	21	28.952	10.989	0	0	0	15	0	CARHSP1	UTR3	NA
MB_Group3_T1--8	16:8948868	G	NA	23	0	23	27.522	11.685	0	0	0	16	0	CARHSP1	UTR3	NA
MB_Group3_T1--9	16:8948868	G	NA	18	0	16	30.312	6.897	0	0	0	11	0	CARHSP1	UTR3	NA
MB_Group3_T1--GL	16:8948868	G	NA	45	0	45	28.244	11.556	0	0	0	31	0	CARHSP1	UTR3	NA
MB_Group3_T1--1	1:93603177	T	C	35	0.171	29	38.621	2.993	6	34.000	4.817	28	5	MTF2	UTR3	NA
MB_Group3_T1--2	1:93603177	T	C	50	0.100	45	37.978	6.188	5	36.600	3.912	44	5	MTF2	UTR3	NA
MB_Group3_T1--3	1:93603177	T	C	46	0.109	41	37.073	6.243	5	35.800	3.633	38	5	MTF2	UTR3	NA
MB_Group3_T1--4	1:93603177	T	C	39	0.205	31	37.387	7.159	8	37.750	1.165	30	8	MTF2	UTR3	NA
MB_Group3_T1--5	1:93603177	T	C	32	0.062	30	38.267	4.051	2	35.000	5.657	28	2	MTF2	UTR3	NA
MB_Group3_T1--6	1:93603177	T	C	30	0.067	28	37.679	5.578	2	35.000	5.657	25	2	MTF2	UTR3	NA
MB_Group3_T1--7	1:93603177	T	C	34	0.147	29	39.345	2.126	5	35.600	4.037	29	5	MTF2	UTR3	NA
MB_Group3_T1--8	1:93603177	T	C	26	0.192	21	38.857	2.670	5	36.200	2.387	21	5	MTF2	UTR3	NA
MB_Group3_T1--9	1:93603177	T	C	19	0.263	14	39.929	1.328	5	36.600	2.510	14	5	MTF2	UTR3	NA
MB_Group3_T1--GL	1:93603177	T	NA	33	0	33	39.121	2.497	0	0	0	33	0	MTF2	UTR3	NA
MB_Group3_T1--1	19:7680391	C	T	54	0.574	23	35.043	8.121	31	37.032	3.773	22	30	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--2	19:7680391	C	T	52	0.442	29	35.207	3.668	23	34.696	4.597	28	19	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--3	19:7680391	C	T	74	0.459	40	32.725	9.674	34	37.029	3.721	32	32	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--4	19:7680391	C	T	53	0.453	29	36.448	6.572	24	35.000	7.343	27	20	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--5	19:7680391	C	T	26	0.538	12	33.583	10.184	14	37.286	4.268	11	13	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--6	19:7680391	C	T	60	0.400	36	33.444	10.106	24	35.542	7.604	31	23	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--7	19:7680391	C	T	58	0.448	32	35.438	6.792	26	37.885	2.776	30	26	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--8	19:7680391	C	T	41	0.317	27	36.852	3.393	13	38.077	2.871	27	13	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--9	19:7680391	C	T	26	0.577	11	36.091	3.113	15	34.200	9.748	11	13	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--GL	19:7680391	C	NA	64	0	64	31.000	11.411	0	0	0	49	0	CAMSAP3	exonic	synonymous_SNV
MB_Group3_T1--1	20:41100976	C	A	145	0.428	83	36.048	6.073	62	36.645	4.794	79	58	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--2	20:41100976	C	A	184	0.516	89	35.517	5.876	95	34.400	7.022	80	80	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--3	20:41100976	C	A	175	0.514	85	34.365	8.339	90	36.011	6.495	73	84	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--4	20:41100976	C	A	115	0.461	62	33.919	8.868	53	34.981	7.727	52	50	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--5	20:41100976	C	A	97	0.515	47	36.340	6.183	50	36.040	4.823	44	46	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--6	20:41100976	C	A	103	0.534	48	36.458	6.291	55	36.055	7.314	46	52	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--7	20:41100976	C	A	108	0.509	53	35.660	7.192	55	35.745	4.975	47	49	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--8	20:41100976	C	A	122	0.516	59	35.678	7.033	63	35.143	7.304	55	57	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--9	20:41100976	C	A	98	0.429	56	36.982	3.661	42	35.667	4.852	53	38	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--GL	20:41100976	C	NA	188	0	187	35.353	6.636	0	0	0	171	0	PTPRT	exonic	synonymous_SNV
MB_Group3_T1--1	20:43343733	A	G	35	0.029	34	34.735	7.894	1	35.000	0.000	28	1	WISP2	upstream	NA
MB_Group3_T1--2	20:43343733	A	G	30	0.167	25	29.480	12.025	5	30.800	9.176	18	4	WISP2	upstream	NA
MB_Group3_T1--3	20:43343733	A	G	33	0.030	32	32.531	10.791	1	35.000	0.000	25	1	WISP2	upstream	NA
MB_Group3_T1--4	20:43343733	A	NA	26	0	26	34.808	7.813	0	0	0	22	0	WISP2	upstream	NA
MB_Group3_T1--5	20:43343733	A	G	26	0.077	24	32.458	9.381	2	36.000	1.414	20	2	WISP2	upstream	NA
MB_Group3_T1--6	20:43343733	A	G	32	0.031	31	32.968	10.127	1	37.000	0.000	24	1	WISP2	upstream	NA
MB_Group3_T1--7	20:43343733	A	NA	23	0	22	33.500	6.131	0	0	0	17	0	WISP2	upstream	NA
MB_Group3_T1--8	20:43343733	A	G	23	0.174	19	34.632	8.713	4	35.250	3.096	17	4	WISP2	upstream	NA
MB_Group3_T1--9	20:43343733	A	G	20	0.050	19	31.105	9.380	1	30.000	0.000	14	1	WISP2	upstream	NA
MB_Group3_T1--GL	20:43343733	A	NA	35	0	35	32.000	8.551	0	0	0	25	0	WISP2	upstream	NA
MB_Group3_T1--1	2:111923653	G	NA	35	0	35	34.743	8.816	0	0	0	30	0	BCL2L11	UTR3	NA
MB_Group3_T1--2	2:111923653	G	NA	38	0	38	37.500	4.434	0	0	0	35	0	BCL2L11	UTR3	NA
MB_Group3_T1--3	2:111923653	G	NA	43	0	42	37.214	6.292	0	0	0	41	0	BCL2L11	UTR3	NA
MB_Group3_T1--4	2:111923653	G	NA	31	0	31	38.161	3.377	0	0	0	31	0	BCL2L11	UTR3	NA
MB_Group3_T1--5	2:111923653	G	T	22	0.136	19	33.211	12.528	3	40.667	0.577	15	3	BCL2L11	UTR3	NA
MB_Group3_T1--6	2:111923653	G	NA	27	0	27	34.852	10.373	0	0	0	24	0	BCL2L11	UTR3	NA
MB_Group3_T1--7	2:111923653	G	NA	34	0	34	35.235	7.746	0	0	0	29	0	BCL2L11	UTR3	NA
MB_Group3_T1--8	2:111923653	G	NA	40	0	40	36.450	6.042	0	0	0	37	0	BCL2L11	UTR3	NA
MB_Group3_T1--9	2:111923653	G	NA	24	0	24	38.458	3.162	0	0	0	24	0	BCL2L11	UTR3	NA
MB_Group3_T1--GL	2:111923653	G	NA	42	0	42	34.738	9.099	0	0	0	36	0	BCL2L11	UTR3	NA
MB_Group3_T1--1	2:135703420	G	A	113	0.416	66	38.212	5.411	47	39.362	2.690	64	46	CCNT2	intronic	NA
MB_Group3_T1--2	2:135703420	G	A	85	0.529	40	38.325	6.646	45	39.222	2.255	38	45	CCNT2	intronic	NA
MB_Group3_T1--3	2:135703420	G	A	129	0.535	60	37.583	6.502	69	37.942	4.284	56	64	CCNT2	intronic	NA
MB_Group3_T1--4	2:135703420	G	A	100	0.590	41	38.073	4.132	59	39.034	2.930	39	58	CCNT2	intronic	NA
MB_Group3_T1--5	2:135703420	G	A	78	0.423	45	38.422	6.181	33	39.879	1.799	44	33	CCNT2	intronic	NA
MB_Group3_T1--6	2:135703420	G	A	90	0.533	42	38.405	3.284	48	38.667	4.931	41	47	CCNT2	intronic	NA
MB_Group3_T1--7	2:135703420	G	A	93	0.570	40	37.075	7.025	53	39.170	2.600	37	53	CCNT2	intronic	NA
MB_Group3_T1--8	2:135703420	G	A	91	0.418	53	39.075	2.674	38	38.816	3.311	53	37	CCNT2	intronic	NA
MB_Group3_T1--9	2:135703420	G	A	55	0.400	33	39.636	2.498	22	36.727	5.329	33	19	CCNT2	intronic	NA
MB_Group3_T1--GL	2:135703420	G	NA	159	0	159	38.321	5.415	0	0	0	153	0	CCNT2	intronic	NA
MB_Group3_T1--1	21:43529544	C	A	26	0.192	21	35.143	9.430	5	34.600	1.342	19	5	UMODL1	intronic	NA
MB_Group3_T1--2	21:43529544	C	A	20	0.050	19	37.474	6.859	1	37.000	0.000	18	1	UMODL1	intronic	NA
MB_Group3_T1--3	21:43529544	C	A	34	0.059	32	38.094	2.668	2	31.000	0.000	32	2	UMODL1	intronic	NA
MB_Group3_T1--4	21:43529544	C	A	30	0.200	24	34.875	8.211	6	34.167	4.665	21	5	UMODL1	intronic	NA
MB_Group3_T1--5	21:43529544	C	A	26	0.077	24	38.625	2.651	2	32.500	2.121	24	2	UMODL1	intronic	NA
MB_Group3_T1--6	21:43529544	C	A	37	0.135	32	36.656	4.708	5	33.400	1.342	30	5	UMODL1	intronic	NA
MB_Group3_T1--7	21:43529544	C	A	24	0.042	23	36.174	8.172	1	35.000	0.000	21	1	UMODL1	intronic	NA
MB_Group3_T1--8	21:43529544	C	A	33	0.182	27	35.889	7.612	6	35.500	2.510	25	6	UMODL1	intronic	NA
MB_Group3_T1--9	21:43529544	C	A	16	0.062	15	36.600	4.983	1	34.000	0.000	13	1	UMODL1	intronic	NA
MB_Group3_T1--GL	21:43529544	C	NA	35	0	35	35.857	6.925	0	0	0	34	0	UMODL1	intronic	NA
MB_Group3_T1--1	21:43693450	C	A	88	0.523	42	33.952	8.471	46	36.326	3.019	36	45	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--2	21:43693450	C	A	68	0.456	37	36.514	3.288	31	35.032	5.486	36	26	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--3	21:43693450	C	A	77	0.558	34	35.176	6.864	43	36.326	5.236	31	39	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--4	21:43693450	C	A	61	0.574	26	33.577	10.285	35	34.229	8.335	22	30	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--5	21:43693450	C	A	51	0.608	20	28.750	14.385	31	35.516	4.603	15	28	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--6	21:43693450	C	A	44	0.545	20	33.350	11.568	24	35.333	8.031	16	23	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--7	21:43693450	C	A	76	0.605	30	33.433	9.054	46	34.630	7.617	28	43	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--8	21:43693450	C	A	67	0.507	33	32.121	10.380	34	34.059	8.776	28	31	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--9	21:43693450	C	A	41	0.488	21	35.190	3.140	20	36.150	4.356	20	19	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	21:43693450	C	NA	70	0	70	34.600	7.115	0	0	0	62	0	ABCG1	exonic	nonsynonymous_SNV
MB_Group3_T1--1	2:159652123	G	C	37	0.378	23	37.870	2.651	14	36.571	10.181	23	13	DAPL1	intronic	NA
MB_Group3_T1--2	2:159652123	G	C	23	0.565	10	35.800	7.772	13	38.154	2.444	9	13	DAPL1	intronic	NA
MB_Group3_T1--3	2:159652123	G	C	39	0.333	26	38.115	3.302	13	37.231	2.976	25	13	DAPL1	intronic	NA
MB_Group3_T1--4	2:159652123	G	C	40	0.375	25	37.520	3.242	15	39.333	1.676	24	15	DAPL1	intronic	NA
MB_Group3_T1--5	2:159652123	G	C	35	0.429	20	38.150	5.860	15	38.000	2.563	19	15	DAPL1	intronic	NA
MB_Group3_T1--6	2:159652123	G	C	29	0.345	19	35.211	10.988	10	32.800	11.233	17	9	DAPL1	intronic	NA
MB_Group3_T1--7	2:159652123	G	C	24	0.458	13	38.538	4.176	11	39.455	1.753	12	11	DAPL1	intronic	NA
MB_Group3_T1--8	2:159652123	G	C	38	0.447	21	38.857	4.127	17	37.412	4.214	20	16	DAPL1	intronic	NA
MB_Group3_T1--9	2:159652123	G	C	29	0.414	17	39.176	2.351	12	36.833	4.019	17	12	DAPL1	intronic	NA
MB_Group3_T1--GL	2:159652123	G	NA	59	0	59	37.220	5.925	0	0	0	56	0	DAPL1	intronic	NA
MB_Group3_T1--1	2:202242644	G	NA	52	0	52	33.308	11.071	0	0	0	44	0	TRAK2	UTR3	NA
MB_Group3_T1--2	2:202242644	G	NA	32	0	32	35.688	9.786	0	0	0	28	0	TRAK2	UTR3	NA
MB_Group3_T1--3	2:202242644	G	NA	69	0	69	33.652	10.399	0	0	0	58	0	TRAK2	UTR3	NA
MB_Group3_T1--4	2:202242644	G	NA	42	0	42	34.429	11.204	0	0	0	37	0	TRAK2	UTR3	NA
MB_Group3_T1--5	2:202242644	G	NA	21	0	21	34.048	11.526	0	0	0	18	0	TRAK2	UTR3	NA
MB_Group3_T1--6	2:202242644	G	T	31	0.129	27	30.148	13.493	4	41.000	0.000	20	4	TRAK2	UTR3	NA
MB_Group3_T1--7	2:202242644	G	NA	29	0	29	36.207	7.794	0	0	0	26	0	TRAK2	UTR3	NA
MB_Group3_T1--8	2:202242644	G	NA	45	0	44	35.523	7.444	0	0	0	39	0	TRAK2	UTR3	NA
MB_Group3_T1--9	2:202242644	G	NA	23	0	22	34.000	11.110	0	0	0	19	0	TRAK2	UTR3	NA
MB_Group3_T1--GL	2:202242644	G	NA	39	0	38	36.368	8.946	0	0	0	35	0	TRAK2	UTR3	NA
MB_Group3_T1--1	22:23165844	T	C	58	0.121	51	37.588	5.756	7	35.714	2.563	47	7	MIR650	downstream	NA
MB_Group3_T1--2	22:23165844	T	C	47	0.106	42	36.810	3.730	5	35.200	3.834	41	5	MIR650	downstream	NA
MB_Group3_T1--3	22:23165844	T	C	58	0.086	53	39.057	2.742	5	34.400	2.881	52	5	MIR650	downstream	NA
MB_Group3_T1--4	22:23165844	T	C	45	0.156	38	36.421	6.989	7	34.286	4.461	34	6	MIR650	downstream	NA
MB_Group3_T1--5	22:23165844	T	C	26	0.115	23	39.174	2.387	3	36.000	3.000	23	3	MIR650	downstream	NA
MB_Group3_T1--6	22:23165844	T	C	36	0.167	30	38.033	6.066	6	35.000	1.549	28	6	MIR650	downstream	NA
MB_Group3_T1--7	22:23165844	T	C	29	0.069	27	34.333	11.136	2	39.000	0.000	22	2	MIR650	downstream	NA
MB_Group3_T1--8	22:23165844	T	C	49	0.082	45	37.511	4.093	4	29.500	10.376	42	3	MIR650	downstream	NA
MB_Group3_T1--9	22:23165844	T	C	25	0.040	24	38.208	5.741	1	34.000	0.000	22	1	MIR650	downstream	NA
MB_Group3_T1--GL	22:23165844	T	NA	50	0	50	38.300	3.157	0	0	0	49	0	MIR650	downstream	NA
MB_Group3_T1--1	2:239307600	A	C	81	0.543	37	39.865	1.873	44	39.136	2.593	37	44	TRAF3IP1	UTR3	NA
MB_Group3_T1--2	2:239307600	A	C	64	0.578	27	38.000	7.442	37	39.270	2.589	26	37	TRAF3IP1	UTR3	NA
MB_Group3_T1--3	2:239307600	A	C	87	0.379	54	38.630	5.874	33	39.061	2.904	52	32	TRAF3IP1	UTR3	NA
MB_Group3_T1--4	2:239307600	A	C	74	0.554	33	39.061	2.633	41	38.171	6.549	33	40	TRAF3IP1	UTR3	NA
MB_Group3_T1--5	2:239307600	A	C	49	0.367	31	38.710	3.196	18	39.667	2.223	31	18	TRAF3IP1	UTR3	NA
MB_Group3_T1--6	2:239307600	A	C	77	0.442	43	36.884	9.972	34	37.735	4.839	40	32	TRAF3IP1	UTR3	NA
MB_Group3_T1--7	2:239307600	A	C	57	0.561	25	38.520	3.525	32	38.562	3.583	25	31	TRAF3IP1	UTR3	NA
MB_Group3_T1--8	2:239307600	A	C	71	0.549	32	38.062	7.130	39	39.513	1.760	31	39	TRAF3IP1	UTR3	NA
MB_Group3_T1--9	2:239307600	A	C	61	0.541	28	39.679	2.326	33	36.970	6.222	28	32	TRAF3IP1	UTR3	NA
MB_Group3_T1--GL	2:239307600	A	NA	102	0	102	39.520	3.060	0	0	0	101	0	TRAF3IP1	UTR3	NA
MB_Group3_T1--1	22:50923826	C	NA	101	0	99	35.333	8.352	0	0	0	88	0	ADM2	UTR3	NA
MB_Group3_T1--2	22:50923826	C	NA	84	0	83	36.578	5.642	0	0	0	79	0	ADM2	UTR3	NA
MB_Group3_T1--3	22:50923826	C	A	145	0.069	135	32.970	11.279	10	32.900	11.396	112	9	ADM2	UTR3	NA
MB_Group3_T1--4	22:50923826	C	NA	114	0	114	34.404	8.846	0	0	0	97	0	ADM2	UTR3	NA
MB_Group3_T1--5	22:50923826	C	A	65	0.046	62	35.452	9.498	3	40.000	1.732	57	3	ADM2	UTR3	NA
MB_Group3_T1--6	22:50923826	C	NA	143	0	143	35.685	7.891	0	0	0	129	0	ADM2	UTR3	NA
MB_Group3_T1--7	22:50923826	C	A	127	0.354	81	35.926	7.700	45	33.667	8.135	77	38	ADM2	UTR3	NA
MB_Group3_T1--8	22:50923826	C	NA	123	0	123	34.496	9.751	0	0	0	112	0	ADM2	UTR3	NA
MB_Group3_T1--9	22:50923826	C	NA	79	0	79	33.722	10.966	0	0	0	66	0	ADM2	UTR3	NA
MB_Group3_T1--GL	22:50923826	C	NA	187	0	185	34.541	9.148	0	0	0	155	0	ADM2	UTR3	NA
MB_Group3_T1--1	2:40339798	C	A	79	0.076	73	33.699	12.381	6	24.667	17.626	60	4	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--2	2:40339798	C	A	75	0.080	69	32.304	13.832	6	29.833	13.891	53	5	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--3	2:40339798	C	A	68	0.162	57	32.877	13.943	11	34.000	2.966	46	11	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--4	2:40339798	C	A	74	0.108	66	33.333	12.641	8	31.250	11.913	54	7	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--5	2:40339798	C	NA	51	0	47	33.915	12.552	0	0	0	39	0	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--6	2:40339798	C	A	55	0.091	50	33.140	13.714	5	28.000	14.560	41	4	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--7	2:40339798	C	A	51	0.098	46	33.609	12.281	5	33.000	2.000	36	5	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--8	2:40339798	C	A	61	0.131	52	32.442	13.414	8	35.875	4.390	40	7	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--9	2:40339798	C	A	47	0.085	43	37.791	7.723	4	33.500	1.915	40	4	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--GL	2:40339798	C	NA	72	0	70	33.843	12.791	0	0	0	59	0	SLC8A1	ncRNA_UTR3	NA
MB_Group3_T1--1	2:62729746	A	G	46	0.022	45	38.378	3.459	1	37.000	0.000	44	1	TMEM17	intronic	NA
MB_Group3_T1--2	2:62729746	A	G	38	0.053	36	38.250	2.862	2	35.500	2.121	36	2	TMEM17	intronic	NA
MB_Group3_T1--3	2:62729746	A	G	49	0.020	48	39.583	2.766	1	37.000	0.000	47	1	TMEM17	intronic	NA
MB_Group3_T1--4	2:62729746	A	G	39	0.026	38	39.316	2.315	1	37.000	0.000	38	1	TMEM17	intronic	NA
MB_Group3_T1--5	2:62729746	A	NA	32	0	32	39.281	2.820	0	0	0	32	0	TMEM17	intronic	NA
MB_Group3_T1--6	2:62729746	A	G	47	0.043	45	37.711	3.597	2	35.500	2.121	44	2	TMEM17	intronic	NA
MB_Group3_T1--7	2:62729746	A	G	29	0.207	23	39.130	2.474	6	34.833	1.722	23	6	TMEM17	intronic	NA
MB_Group3_T1--8	2:62729746	A	NA	44	0	44	39.455	2.347	0	0	0	44	0	TMEM17	intronic	NA
MB_Group3_T1--9	2:62729746	A	NA	32	0	32	38.625	3.377	0	0	0	32	0	TMEM17	intronic	NA
MB_Group3_T1--GL	2:62729746	A	NA	46	0	46	39.239	3.260	0	0	0	45	0	TMEM17	intronic	NA
MB_Group3_T1--1	2:62729747	G	NA	45	0	44	37.614	6.398	0	0	0	41	0	TMEM17	intronic	NA
MB_Group3_T1--2	2:62729747	G	A	37	0.081	34	38.412	2.862	3	36.667	2.517	34	3	TMEM17	intronic	NA
MB_Group3_T1--3	2:62729747	G	NA	49	0	47	39.255	2.900	0	0	0	47	0	TMEM17	intronic	NA
MB_Group3_T1--4	2:62729747	G	NA	39	0	38	39.263	2.501	0	0	0	38	0	TMEM17	intronic	NA
MB_Group3_T1--5	2:62729747	G	NA	31	0	31	39.548	2.127	0	0	0	31	0	TMEM17	intronic	NA
MB_Group3_T1--6	2:62729747	G	A	47	0.043	44	38.023	2.799	2	35.500	2.121	44	2	TMEM17	intronic	NA
MB_Group3_T1--7	2:62729747	G	A	28	0.214	22	39.318	2.297	6	35.167	2.787	22	6	TMEM17	intronic	NA
MB_Group3_T1--8	2:62729747	G	NA	43	0	43	39.558	2.557	0	0	0	42	0	TMEM17	intronic	NA
MB_Group3_T1--9	2:62729747	G	A	32	0.031	31	38.065	4.234	1	34.000	0.000	29	1	TMEM17	intronic	NA
MB_Group3_T1--GL	2:62729747	G	NA	46	0	46	38.609	5.230	0	0	0	44	0	TMEM17	intronic	NA
MB_Group3_T1--1	3:45458815	G	A	34	0.471	18	37.667	3.865	16	39.188	2.713	18	16	LARS2	intronic	NA
MB_Group3_T1--2	3:45458815	G	A	30	0.467	16	38.875	3.074	14	36.071	10.118	16	13	LARS2	intronic	NA
MB_Group3_T1--3	3:45458815	G	A	29	0.586	12	35.250	7.641	17	39.235	2.990	10	17	LARS2	intronic	NA
MB_Group3_T1--4	3:45458815	G	A	29	0.552	13	37.615	4.407	16	35.500	9.933	12	13	LARS2	intronic	NA
MB_Group3_T1--5	3:45458815	G	A	21	0.571	9	38.111	5.110	12	37.333	5.069	8	11	LARS2	intronic	NA
MB_Group3_T1--6	3:45458815	G	A	25	0.560	11	39.455	2.339	14	38.357	4.568	11	13	LARS2	intronic	NA
MB_Group3_T1--7	3:45458815	G	A	24	0.542	11	37.636	3.233	13	39.846	2.115	11	13	LARS2	intronic	NA
MB_Group3_T1--8	3:45458815	G	A	15	0.733	4	37.750	4.717	11	39.182	1.940	4	11	LARS2	intronic	NA
MB_Group3_T1--9	3:45458815	G	A	13	0.538	6	30.500	15.083	7	35.714	3.773	4	7	LARS2	intronic	NA
MB_Group3_T1--GL	3:45458815	G	NA	49	0	49	38.714	3.736	0	0	0	47	0	LARS2	intronic	NA
MB_Group3_T1--1	4:190394513	G	T	171	0.415	100	37.800	3.957	71	37.324	4.604	97	67	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--2	4:190394513	G	T	177	0.520	85	37.635	3.829	92	36.554	5.048	82	85	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--3	4:190394513	G	T	182	0.500	91	37.363	5.436	91	36.659	6.360	82	84	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--4	4:190394513	G	T	120	0.450	65	37.985	5.467	54	36.481	7.543	62	50	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--5	4:190394513	G	T	100	0.480	52	37.962	5.964	48	37.062	6.051	50	45	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--6	4:190394513	G	T	110	0.436	62	36.161	6.792	48	37.208	4.120	57	45	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--7	4:190394513	G	T	116	0.466	62	38.113	3.422	54	36.130	8.205	61	48	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--8	4:190394513	G	T	141	0.461	76	37.921	4.698	65	37.462	7.137	72	61	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--9	4:190394513	G	T	87	0.483	45	35.156	10.473	42	38.167	3.695	39	40	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--GL	4:190394513	G	NA	159	0	159	38.006	4.878	0	0	0	149	0	LINC01060(dist=871451),FRG1(dist=467461)	intergenic	NA
MB_Group3_T1--1	4:39469359	C	T	40	0.400	24	35.042	8.995	16	38.375	2.964	21	16	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--2	4:39469359	C	T	38	0.500	19	39.368	2.266	19	38.684	3.497	19	18	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--3	4:39469359	C	T	48	0.479	25	37.560	4.797	23	37.522	5.567	23	22	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--4	4:39469359	C	T	48	0.500	24	39.083	2.412	24	37.375	3.763	24	23	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--5	4:39469359	C	T	34	0.382	21	39.143	3.941	13	39.615	1.502	20	13	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--6	4:39469359	C	T	53	0.472	28	37.714	5.449	25	37.840	7.760	25	24	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--7	4:39469359	C	T	37	0.541	17	35.941	6.240	20	37.750	4.435	15	19	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--8	4:39469359	C	T	42	0.405	25	37.920	3.785	17	38.941	2.794	24	17	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--9	4:39469359	C	T	34	0.471	18	36.556	4.566	16	38.938	2.462	17	16	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--GL	4:39469359	C	NA	67	0	67	37.373	5.797	0	0	0	63	0	MIR1273H	ncRNA_intronic	NA
MB_Group3_T1--1	4:4861836	C	G	73	0.397	44	36.159	3.227	29	35.621	3.726	42	28	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--2	4:4861836	C	G	79	0.468	42	34.976	6.411	37	36.027	2.958	39	37	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--3	4:4861836	C	G	68	0.529	31	34.161	9.227	36	33.667	8.963	28	32	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--4	4:4861836	C	G	53	0.509	26	35.077	8.094	27	33.593	7.402	23	23	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--5	4:4861836	C	G	35	0.571	15	32.867	10.521	20	34.050	8.049	13	19	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--6	4:4861836	C	G	50	0.380	31	34.806	7.521	19	33.789	8.574	28	16	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--7	4:4861836	C	G	46	0.304	32	34.562	7.474	14	35.786	4.388	29	13	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--8	4:4861836	C	G	56	0.464	30	35.433	6.912	26	33.923	9.117	29	24	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--9	4:4861836	C	G	37	0.270	27	34.444	7.552	10	37.100	3.446	24	9	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	4:4861836	C	NA	77	0	77	36.208	3.282	0	0	0	75	0	MSX1	exonic	nonsynonymous_SNV
MB_Group3_T1--1	5:140203287	C	T	106	0.443	59	31.458	11.566	47	31.851	9.313	49	38	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--2	5:140203287	C	T	77	0.494	38	34.842	7.988	38	34.789	5.200	33	34	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--3	5:140203287	C	T	112	0.402	67	33.567	8.108	45	33.978	6.631	55	36	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--4	5:140203287	C	T	74	0.554	33	30.333	12.017	41	32.561	8.143	26	35	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--5	5:140203287	C	T	63	0.413	37	31.730	10.495	26	33.769	7.474	28	24	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--6	5:140203287	C	T	86	0.442	48	33.021	6.486	38	33.184	9.617	40	32	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--7	5:140203287	C	T	58	0.466	31	29.871	11.670	27	35.000	4.019	22	25	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--8	5:140203287	C	T	76	0.513	37	33.108	8.993	39	29.179	12.645	32	29	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--9	5:140203287	C	T	45	0.444	24	33.375	9.636	20	32.600	9.167	21	17	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	5:140203287	C	NA	95	0	95	34.400	6.608	0	0	0	83	0	PCDHA5	exonic	nonsynonymous_SNV
MB_Group3_T1--1	5:179157297	T	G	26	0.192	21	39.476	3.140	5	33.600	1.673	21	5	CANX	UTR3	NA
MB_Group3_T1--2	5:179157297	T	G	12	0.167	10	39.300	1.703	2	31.000	0.000	10	2	CANX	UTR3	NA
MB_Group3_T1--3	5:179157297	T	NA	23	0	23	37.565	4.980	0	0	0	22	0	CANX	UTR3	NA
MB_Group3_T1--4	5:179157297	T	G	24	0.042	23	39.913	1.756	1	32.000	0.000	23	1	CANX	UTR3	NA
MB_Group3_T1--5	5:179157297	T	NA	13	0	13	36.385	7.388	0	0	0	10	0	CANX	UTR3	NA
MB_Group3_T1--6	5:179157297	T	NA	24	0	24	38.750	2.967	0	0	0	24	0	CANX	UTR3	NA
MB_Group3_T1--7	5:179157297	T	NA	15	0	14	37.214	4.228	0	0	0	13	0	CANX	UTR3	NA
MB_Group3_T1--8	5:179157297	T	G	14	0.071	13	38.000	3.894	1	31.000	0.000	12	1	CANX	UTR3	NA
MB_Group3_T1--9	5:179157297	T	G	16	0.062	15	36.933	10.131	1	35.000	0.000	13	1	CANX	UTR3	NA
MB_Group3_T1--GL	5:179157297	T	NA	54	0	54	38.481	3.495	0	0	0	53	0	CANX	UTR3	NA
MB_Group3_T1--1	5:179287207	C	NA	21	0	21	35.286	8.427	0	0	0	20	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--2	5:179287207	C	NA	23	0	23	36.130	5.771	0	0	0	21	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--3	5:179287207	C	T	28	0.036	26	34.577	7.849	1	33.000	0.000	24	1	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--4	5:179287207	C	NA	16	0	15	36.333	9.708	0	0	0	14	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--5	5:179287207	C	T	25	0.240	19	35.579	7.911	6	31.167	2.317	17	5	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--6	5:179287207	C	NA	19	0	19	33.632	9.014	0	0	0	16	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--7	5:179287207	C	NA	16	0	16	32.500	11.650	0	0	0	14	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--8	5:179287207	C	NA	15	0	15	34.533	6.781	0	0	0	11	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--9	5:179287207	C	NA	19	0	18	33.611	9.198	0	0	0	15	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--GL	5:179287207	C	NA	46	0	46	36.000	5.680	0	0	0	40	0	C5orf45(dist=1367),TBC1D9B(dist=1864)	intergenic	NA
MB_Group3_T1--1	6:26414294	T	NA	37	0	30	36.700	6.587	0	0	0	26	0	BTN3A1	UTR3	NA
MB_Group3_T1--2	6:26414294	T	A	47	0.021	33	36.182	9.658	1	34.000	0.000	29	1	BTN3A1	UTR3	NA
MB_Group3_T1--3	6:26414294	T	NA	44	0	35	38.543	2.914	0	0	0	35	0	BTN3A1	UTR3	NA
MB_Group3_T1--4	6:26414294	T	A	39	0.026	26	37.423	4.187	1	41.000	0.000	25	1	BTN3A1	UTR3	NA
MB_Group3_T1--5	6:26414294	T	A	29	0.034	17	35.059	12.060	1	41.000	0.000	14	1	BTN3A1	UTR3	NA
MB_Group3_T1--6	6:26414294	T	A	50	0.020	37	36.973	7.236	1	41.000	0.000	34	1	BTN3A1	UTR3	NA
MB_Group3_T1--7	6:26414294	T	A	34	0.029	28	38.679	3.232	1	35.000	0.000	27	1	BTN3A1	UTR3	NA
MB_Group3_T1--8	6:26414294	T	A	39	0.154	24	36.875	6.911	6	37.667	3.559	21	6	BTN3A1	UTR3	NA
MB_Group3_T1--9	6:26414294	T	NA	28	0	17	35.529	9.415	0	0	0	15	0	BTN3A1	UTR3	NA
MB_Group3_T1--GL	6:26414294	T	NA	51	0	33	37.909	4.111	0	0	0	31	0	BTN3A1	UTR3	NA
MB_Group3_T1--1	6:31902289	C	T	97	0.464	52	35.000	10.236	45	34.556	7.319	46	40	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--2	6:31902289	C	T	89	0.404	53	37.623	4.744	36	35.417	6.665	49	32	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--3	6:31902289	C	T	107	0.477	56	37.607	6.641	51	35.667	6.901	52	45	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--4	6:31902289	C	T	88	0.466	47	35.511	8.615	41	33.780	7.939	41	34	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--5	6:31902289	C	T	63	0.556	27	38.074	3.792	35	36.171	6.294	26	32	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--6	6:31902289	C	T	71	0.394	43	38.279	3.459	28	35.250	7.768	42	23	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--7	6:31902289	C	T	80	0.412	47	38.085	4.005	33	35.182	7.892	46	30	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--8	6:31902289	C	T	71	0.451	39	37.282	6.366	32	32.906	9.430	37	24	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--9	6:31902289	C	T	54	0.537	25	39.120	2.666	29	34.966	9.905	25	25	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--GL	6:31902289	C	NA	112	0	112	36.884	6.388	0	0	0	102	0	LOC102060414	ncRNA_exonic	NA
MB_Group3_T1--1	7:29961120	C	T	87	0.034	41	38.585	3.369	3	37.667	1.155	40	3	SCRN1	UTR3	NA
MB_Group3_T1--2	7:29961120	C	T	97	0.062	40	36.200	6.922	6	31.667	14.665	37	5	SCRN1	UTR3	NA
MB_Group3_T1--3	7:29961120	C	T	131	0.084	54	38.722	2.811	11	35.273	2.867	53	11	SCRN1	UTR3	NA
MB_Group3_T1--4	7:29961120	C	T	82	0.049	31	37.710	3.788	4	27.250	16.998	30	3	SCRN1	UTR3	NA
MB_Group3_T1--5	7:29961120	C	T	62	0.065	26	37.654	3.509	4	38.000	1.155	25	4	SCRN1	UTR3	NA
MB_Group3_T1--6	7:29961120	C	NA	73	0	32	38.531	3.519	0	0	0	30	0	SCRN1	UTR3	NA
MB_Group3_T1--7	7:29961120	C	T	76	0.053	32	37.906	4.245	4	37.250	3.500	30	4	SCRN1	UTR3	NA
MB_Group3_T1--8	7:29961120	C	T	89	0.056	36	37.889	3.778	5	38.400	1.342	35	5	SCRN1	UTR3	NA
MB_Group3_T1--9	7:29961120	C	T	51	0.059	21	38.238	2.879	3	35.333	2.517	21	3	SCRN1	UTR3	NA
MB_Group3_T1--GL	7:29961120	C	NA	76	0	44	37.364	6.413	0	0	0	41	0	SCRN1	UTR3	NA
MB_Group3_T1--1	8:121518974	C	A	102	0.265	75	39.147	2.288	27	39.074	2.510	74	27	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--2	8:121518974	C	A	136	0.007	135	38.430	4.322	1	39.000	0.000	133	1	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--3	8:121518974	C	A	114	0.096	103	38.068	6.556	11	39.000	3.225	99	11	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--4	8:121518974	C	A	109	0.248	82	38.098	4.824	27	37.185	7.845	79	25	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--5	8:121518974	C	NA	87	0	87	38.034	4.945	0	0	0	84	0	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--6	8:121518974	C	A	79	0.329	53	38.358	5.994	26	39.115	2.455	51	26	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--7	8:121518974	C	NA	108	0	108	39.454	2.163	0	0	0	108	0	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--8	8:121518974	C	A	98	0.327	66	38.515	5.444	32	37.438	6.021	62	31	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--9	8:121518974	C	A	60	0.317	41	38.634	3.819	19	37.632	5.079	40	17	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--GL	8:121518974	C	NA	70	0	68	38.853	2.627	0	0	0	68	0	MTBP	exonic	nonsynonymous_SNV
MB_Group3_T1--1	9:139998366	G	A	163	0.399	98	36.214	7.340	65	34.523	7.567	92	55	MAN1B1	intronic	NA
MB_Group3_T1--2	9:139998366	G	A	118	0.585	48	36.146	7.949	69	38.116	3.509	44	66	MAN1B1	intronic	NA
MB_Group3_T1--3	9:139998366	G	A	182	0.456	99	35.192	7.518	83	36.145	7.497	83	77	MAN1B1	intronic	NA
MB_Group3_T1--4	9:139998366	G	A	141	0.433	79	35.962	7.865	61	35.820	7.478	73	55	MAN1B1	intronic	NA
MB_Group3_T1--5	9:139998366	G	A	117	0.496	59	35.983	7.569	58	37.690	2.981	55	58	MAN1B1	intronic	NA
MB_Group3_T1--6	9:139998366	G	A	215	0.465	115	33.939	10.257	100	36.130	7.521	102	90	MAN1B1	intronic	NA
MB_Group3_T1--7	9:139998366	G	A	154	0.435	87	36.701	7.013	67	37.358	5.440	82	66	MAN1B1	intronic	NA
MB_Group3_T1--8	9:139998366	G	A	153	0.438	86	36.302	6.999	67	37.388	3.935	79	64	MAN1B1	intronic	NA
MB_Group3_T1--9	9:139998366	G	A	95	0.579	40	37.200	6.390	55	36.945	6.108	38	53	MAN1B1	intronic	NA
MB_Group3_T1--GL	9:139998366	G	NA	263	0	262	34.485	8.948	0	0	0	225	0	MAN1B1	intronic	NA
MB_Group3_T1--1	MT:8079	T	C	321	0.202	255	35.329	6.235	65	36.031	6.766	230	59	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--2	MT:8079	T	C	317	0.066	295	36.058	6.162	21	37.810	6.882	267	20	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--3	MT:8079	T	C	340	0.082	312	35.391	6.305	28	35.786	8.863	280	26	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--4	MT:8079	T	C	176	0.085	161	34.348	9.203	15	37.733	3.535	138	14	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--5	MT:8079	T	C	145	0.041	138	34.942	7.287	6	37.000	6.325	122	5	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--6	MT:8079	T	C	122	0.172	101	36.535	5.407	21	35.857	3.678	94	20	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--7	MT:8079	T	NA	208	0	207	35.570	6.363	0	0	0	184	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--8	MT:8079	T	C	216	0.199	173	36.116	5.870	43	36.233	6.210	161	40	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--9	MT:8079	T	C	145	0.028	140	36.507	5.185	4	40.750	0.500	130	4	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--GL	MT:8079	T	NA	68	0	68	36.456	5.592	0	0	0	63	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--1	MT:8115	G	A	319	0.279	230	35.565	6.829	89	35.562	8.132	207	82	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--2	MT:8115	G	A	317	0.180	260	36.435	5.829	57	37.211	3.488	243	54	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--3	MT:8115	G	A	301	0.159	252	36.341	5.635	48	35.229	7.191	232	44	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--4	MT:8115	G	A	170	0.235	130	35.392	7.454	40	35.000	6.950	117	36	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--5	MT:8115	G	A	124	0.137	107	36.486	6.564	17	36.882	2.977	97	16	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--6	MT:8115	G	A	121	0.372	75	36.613	4.441	45	35.044	6.619	71	38	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--7	MT:8115	G	NA	200	0	200	36.375	6.999	0	0	0	187	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--8	MT:8115	G	A	241	0.452	132	35.833	7.607	109	37.193	4.033	122	103	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--9	MT:8115	G	A	144	0.083	132	36.689	6.065	12	36.750	3.720	123	12	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group3_T1--GL	MT:8115	G	NA	69	0	69	36.159	6.786	0	0	0	64	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chr10:1038296	T	C	19	0.211	15	34.200	5.772	4	37.250	2.630	12	4	GTPBP4	intronic	NA
MB_Group4_T1--2	chr10:1038296	T	C	17	0.176	13	30.615	9.544	3	37.000	0.000	9	3	GTPBP4	intronic	NA
MB_Group4_T1--3	chr10:1038296	T	C	90	0.067	84	34.893	4.904	6	31.833	10.741	78	5	GTPBP4	intronic	NA
MB_Group4_T1--4	chr10:1038296	T	C	18	0.056	17	33.412	5.546	1	37.000	0.000	15	1	GTPBP4	intronic	NA
MB_Group4_T1--5	chr10:1038296	T	C	104	0.202	83	32.108	7.267	21	35.810	2.857	63	19	GTPBP4	intronic	NA
MB_Group4_T1--6	chr10:1038296	T	C	15	0.200	12	35.333	2.807	3	35.333	2.887	12	3	GTPBP4	intronic	NA
MB_Group4_T1--GL	chr10:1038296	T	NA	57	0	56	34.304	4.427	0	0	0	51	0	GTPBP4	intronic	NA
MB_Group4_T1--1	chr10:104171622	A	G	15	0.267	11	35.000	4.626	4	35.750	2.500	9	4	PSD	intronic	NA
MB_Group4_T1--2	chr10:104171622	A	G	28	0.250	21	37.190	3.894	7	36.286	1.890	20	7	PSD	intronic	NA
MB_Group4_T1--3	chr10:104171622	A	NA	97	0	97	36.361	4.750	0	0	0	93	0	PSD	intronic	NA
MB_Group4_T1--4	chr10:104171622	A	G	24	0.208	19	37.105	4.254	5	36.600	0.894	17	5	PSD	intronic	NA
MB_Group4_T1--5	chr10:104171622	A	G	99	0.091	90	36.056	5.496	9	36.778	0.667	83	9	PSD	intronic	NA
MB_Group4_T1--6	chr10:104171622	A	G	16	0.125	14	35.429	8.627	2	37.500	0.707	13	2	PSD	intronic	NA
MB_Group4_T1--GL	chr10:104171622	A	NA	56	0	56	36.732	3.835	0	0	0	54	0	PSD	intronic	NA
MB_Group4_T1--1	chr10:124746527	C	NA	21	0	21	36.000	4.648	0	0	0	19	0	PSTK	intronic	NA
MB_Group4_T1--2	chr10:124746527	C	NA	25	0	25	38.240	3.045	0	0	0	25	0	PSTK	intronic	NA
MB_Group4_T1--3	chr10:124746527	C	NA	41	0	40	37.250	3.966	0	0	0	37	0	PSTK	intronic	NA
MB_Group4_T1--4	chr10:124746527	C	NA	12	0	12	37.917	3.088	0	0	0	12	0	PSTK	intronic	NA
MB_Group4_T1--5	chr10:124746527	C	NA	19	0	19	36.737	3.462	0	0	0	18	0	PSTK	intronic	NA
MB_Group4_T1--6	chr10:124746527	C	A	13	0.231	10	39.400	1.578	3	40.667	0.577	10	3	PSTK	intronic	NA
MB_Group4_T1--GL	chr10:124746527	C	NA	67	0	66	36.439	5.660	0	0	0	62	0	PSTK	intronic	NA
MB_Group4_T1--1	chr10:129906761	A	NA	32	0	32	37.125	3.643	0	0	0	31	0	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr10:129906761	A	T	31	0.032	30	36.133	3.758	1	31.000	0.000	29	1	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr10:129906761	A	NA	118	0	118	36.729	4.274	0	0	0	114	0	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr10:129906761	A	NA	17	0	17	34.765	7.571	0	0	0	14	0	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr10:129906761	A	NA	30	0	30	36.500	3.014	0	0	0	30	0	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr10:129906761	A	T	14	0.214	11	38.364	2.767	3	38.333	2.309	11	3	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr10:129906761	A	NA	208	0	207	36.406	4.047	0	0	0	196	0	MKI67	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr10:13375957	C	NA	21	0	21	36.286	3.594	0	0	0	20	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--2	chr10:13375957	C	NA	31	0	31	35.355	5.251	0	0	0	28	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--3	chr10:13375957	C	NA	77	0	77	35.610	5.314	0	0	0	72	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--4	chr10:13375957	C	A	16	0.188	12	35.417	1.505	3	36.000	2.646	12	3	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--5	chr10:13375957	C	NA	60	0	60	35.883	3.971	0	0	0	56	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--6	chr10:13375957	C	NA	10	0	10	34.400	9.155	0	0	0	8	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr10:13375957	C	NA	47	0	47	36.021	2.715	0	0	0	46	0	SEPHS1	exonic	synonymous_SNV
MB_Group4_T1--1	chr10:13639697	T	C	32	0.219	25	38.080	3.214	7	39.571	1.618	25	7	PRPF18	intronic	NA
MB_Group4_T1--2	chr10:13639697	T	NA	33	0	33	38.939	2.645	0	0	0	33	0	PRPF18	intronic	NA
MB_Group4_T1--3	chr10:13639697	T	C	44	0.068	41	37.098	4.212	3	40.000	1.000	39	3	PRPF18	intronic	NA
MB_Group4_T1--4	chr10:13639697	T	NA	19	0	19	37.684	3.128	0	0	0	19	0	PRPF18	intronic	NA
MB_Group4_T1--5	chr10:13639697	T	NA	13	0	13	38.846	2.577	0	0	0	13	0	PRPF18	intronic	NA
MB_Group4_T1--6	chr10:13639697	T	NA	22	0	22	39.182	2.423	0	0	0	22	0	PRPF18	intronic	NA
MB_Group4_T1--GL	chr10:13639697	T	NA	79	0	79	37.861	3.822	0	0	0	77	0	PRPF18	intronic	NA
MB_Group4_T1--1	chr10:14974711	C	A	13	0.231	10	38.700	2.359	3	35.000	3.000	10	3	DCLRE1C	intronic	NA
MB_Group4_T1--2	chr10:14974711	C	NA	14	0	14	38.786	3.577	0	0	0	13	0	DCLRE1C	intronic	NA
MB_Group4_T1--3	chr10:14974711	C	NA	73	0	73	37.685	4.180	0	0	0	70	0	DCLRE1C	intronic	NA
MB_Group4_T1--4	chr10:14974711	C	NA	16	0	16	38.125	3.423	0	0	0	16	0	DCLRE1C	intronic	NA
MB_Group4_T1--5	chr10:14974711	C	NA	38	0	38	36.947	5.204	0	0	0	35	0	DCLRE1C	intronic	NA
MB_Group4_T1--6	chr10:14974711	C	NA	14	0	14	39.214	1.888	0	0	0	14	0	DCLRE1C	intronic	NA
MB_Group4_T1--GL	chr10:14974711	C	NA	62	0	62	37.823	4.018	0	0	0	59	0	DCLRE1C	intronic	NA
MB_Group4_T1--1	chr10:15058792	C	T	30	0.100	27	32.333	6.833	3	30.000	1.732	22	2	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--2	chr10:15058792	C	T	37	0.162	31	34.935	4.147	6	33.833	2.714	29	6	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--3	chr10:15058792	C	NA	116	0	116	34.345	6.343	0	0	0	100	0	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--4	chr10:15058792	C	T	20	0.150	17	34.588	6.011	3	29.333	11.590	15	2	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--5	chr10:15058792	C	T	95	0.063	89	32.629	8.229	6	36.333	1.033	72	6	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--6	chr10:15058792	C	NA	23	0	22	35.455	4.728	0	0	0	21	0	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--GL	chr10:15058792	C	NA	98	0	98	34.755	5.272	0	0	0	90	0	MEIG1(dist=43942),OLAH(dist=27103)	intergenic	NA
MB_Group4_T1--1	chr10:17165598	G	NA	51	0	50	37.980	3.390	0	0	0	49	0	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr10:17165598	G	NA	39	0	39	38.103	3.093	0	0	0	39	0	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr10:17165598	G	A	111	0.018	109	38.046	4.070	2	37.000	0.000	106	2	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr10:17165598	G	NA	31	0	31	37.645	3.272	0	0	0	30	0	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr10:17165598	G	A	35	0.171	29	37.931	2.939	6	37.000	0.000	29	6	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr10:17165598	G	NA	21	0	21	38.524	2.892	0	0	0	21	0	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr10:17165598	G	NA	124	0	124	37.427	3.589	0	0	0	121	0	CUBN	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr10:17165599	G	NA	51	0	51	37.294	4.071	0	0	0	49	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--2	chr10:17165599	G	NA	38	0	38	38.079	3.723	0	0	0	37	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--3	chr10:17165599	G	A	111	0.018	109	38.037	3.600	2	37.000	0.000	105	2	CUBN	exonic	synonymous_SNV
MB_Group4_T1--4	chr10:17165599	G	NA	31	0	31	37.839	3.277	0	0	0	30	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--5	chr10:17165599	G	A	35	0.171	29	37.552	3.933	6	37.000	0.000	28	6	CUBN	exonic	synonymous_SNV
MB_Group4_T1--6	chr10:17165599	G	NA	21	0	21	38.571	2.785	0	0	0	21	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--GL	chr10:17165599	G	NA	124	0	124	37.153	4.156	0	0	0	116	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--1	chr10:17165641	T	C	44	0.159	37	35.459	4.845	7	36.143	2.035	34	7	CUBN	exonic	synonymous_SNV
MB_Group4_T1--2	chr10:17165641	T	C	42	0.048	40	36.900	2.925	2	35.500	2.121	39	2	CUBN	exonic	synonymous_SNV
MB_Group4_T1--3	chr10:17165641	T	C	117	0.060	110	34.873	4.743	7	35.571	4.995	101	6	CUBN	exonic	synonymous_SNV
MB_Group4_T1--4	chr10:17165641	T	C	29	0.069	27	35.296	4.268	2	36.000	1.414	24	2	CUBN	exonic	synonymous_SNV
MB_Group4_T1--5	chr10:17165641	T	C	31	0.097	28	34.893	5.308	3	37.000	0.000	25	3	CUBN	exonic	synonymous_SNV
MB_Group4_T1--6	chr10:17165641	T	NA	24	0	24	35.458	2.750	0	0	0	23	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--GL	chr10:17165641	T	NA	109	0	109	34.431	5.588	0	0	0	95	0	CUBN	exonic	synonymous_SNV
MB_Group4_T1--1	chr10:21104743	G	A	15	0.067	14	38.429	2.709	1	37.000	0.000	14	1	NEBL	intronic	NA
MB_Group4_T1--2	chr10:21104743	G	A	23	0.130	20	38.200	2.966	3	34.000	7.000	20	2	NEBL	intronic	NA
MB_Group4_T1--3	chr10:21104743	G	A	60	0.083	55	37.745	4.042	5	36.400	2.408	52	5	NEBL	intronic	NA
MB_Group4_T1--4	chr10:21104743	G	NA	20	0	20	38.900	2.573	0	0	0	20	0	NEBL	intronic	NA
MB_Group4_T1--5	chr10:21104743	G	A	39	0.308	27	37.185	5.923	12	34.583	6.201	25	11	NEBL	intronic	NA
MB_Group4_T1--6	chr10:21104743	G	A	14	0.071	13	38.615	2.329	1	37.000	0.000	13	1	NEBL	intronic	NA
MB_Group4_T1--GL	chr10:21104743	G	NA	76	0	76	37.987	3.587	0	0	0	74	0	NEBL	intronic	NA
MB_Group4_T1--1	chr10:27450203	A	NA	17	0	17	37.706	4.714	0	0	0	16	0	MASTL	intronic	NA
MB_Group4_T1--2	chr10:27450203	A	G	30	0.100	27	36.815	5.512	3	37.000	0.000	25	3	MASTL	intronic	NA
MB_Group4_T1--3	chr10:27450203	A	G	68	0.059	64	37.766	5.371	4	36.250	1.500	61	4	MASTL	intronic	NA
MB_Group4_T1--4	chr10:27450203	A	G	15	0.067	13	39.615	2.256	1	35.000	0.000	13	1	MASTL	intronic	NA
MB_Group4_T1--5	chr10:27450203	A	G	55	0.200	44	37.614	5.292	11	34.364	8.103	43	10	MASTL	intronic	NA
MB_Group4_T1--6	chr10:27450203	A	G	19	0.053	18	38.333	2.828	1	35.000	0.000	18	1	MASTL	intronic	NA
MB_Group4_T1--GL	chr10:27450203	A	NA	40	0	40	37.975	4.796	0	0	0	38	0	MASTL	intronic	NA
MB_Group4_T1--1	chr10:32974893	T	NA	24	0	24	38.375	2.568	0	0	0	24	0	CCDC7	intronic	NA
MB_Group4_T1--2	chr10:32974893	T	NA	21	0	21	39.286	2.261	0	0	0	21	0	CCDC7	intronic	NA
MB_Group4_T1--3	chr10:32974893	T	NA	41	0	41	38.415	2.881	0	0	0	41	0	CCDC7	intronic	NA
MB_Group4_T1--4	chr10:32974893	T	A	19	0.158	16	39.562	2.128	3	39.333	2.082	16	3	CCDC7	intronic	NA
MB_Group4_T1--5	chr10:32974893	T	NA	10	0	10	38.900	2.183	0	0	0	10	0	CCDC7	intronic	NA
MB_Group4_T1--6	chr10:32974893	T	NA	17	0	17	39.471	2.154	0	0	0	17	0	CCDC7	intronic	NA
MB_Group4_T1--GL	chr10:32974893	T	NA	58	0	58	37.879	3.168	0	0	0	58	0	CCDC7	intronic	NA
MB_Group4_T1--1	chr10:38738047	C	T	33	0.061	31	36.065	4.024	2	33.500	2.121	29	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--2	chr10:38738047	C	T	36	0.139	31	35.710	6.056	5	36.200	1.095	29	5	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--3	chr10:38738047	C	NA	157	0	157	34.064	6.218	0	0	0	140	0	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--4	chr10:38738047	C	T	18	0.111	16	31.938	9.320	2	36.000	1.414	13	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--5	chr10:38738047	C	T	158	0.032	153	34.392	4.994	5	33.400	4.159	141	4	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--6	chr10:38738047	C	T	20	0.100	18	34.222	4.250	2	37.000	0.000	16	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--GL	chr10:38738047	C	NA	45	0	45	34.289	5.159	0	0	0	41	0	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--1	chr10:38738048	C	G	32	0.062	30	35.833	4.426	2	31.500	2.121	28	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--2	chr10:38738048	C	G	36	0.139	31	36.484	4.725	5	36.200	1.095	30	5	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--3	chr10:38738048	C	NA	154	0	154	34.370	6.010	0	0	0	137	0	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--4	chr10:38738048	C	G	18	0.111	16	34.438	3.386	2	36.000	1.414	15	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--5	chr10:38738048	C	G	156	0.032	150	34.880	4.424	5	35.400	2.608	136	5	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--6	chr10:38738048	C	G	20	0.100	18	34.333	3.646	2	35.500	2.121	17	2	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--GL	chr10:38738048	C	NA	43	0	43	35.140	3.489	0	0	0	41	0	LINC00999	ncRNA_exonic	NA
MB_Group4_T1--1	chr10:38817281	C	NA	18	0	18	38.278	4.281	0	0	0	17	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--2	chr10:38817281	C	NA	27	0	27	37.222	4.163	0	0	0	25	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--3	chr10:38817281	C	NA	34	0	34	38.176	3.451	0	0	0	33	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--4	chr10:38817281	C	NA	11	0	11	37.091	3.936	0	0	0	10	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--5	chr10:38817281	C	NA	20	0	20	37.900	2.989	0	0	0	20	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--6	chr10:38817281	C	G	10	0.300	7	36.000	7.916	3	38.333	3.786	6	3	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--GL	chr10:38817281	C	NA	43	0	43	38.977	2.283	0	0	0	43	0	LINC00999(dist=76200),ACTR3BP5(dist=172446)	intergenic	NA
MB_Group4_T1--1	chr10:39006344	G	T	45	0.378	28	37.393	4.211	17	37.765	2.796	26	17	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--2	chr10:39006344	G	T	38	0.184	31	36.935	4.396	7	38.571	2.820	29	7	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--3	chr10:39006344	G	T	96	0.396	58	37.017	4.063	38	36.947	2.950	56	38	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--4	chr10:39006344	G	NA	18	0	18	38.000	3.029	0	0	0	18	0	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--5	chr10:39006344	G	T	37	0.297	26	38.077	2.911	11	37.727	2.240	26	11	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--6	chr10:39006344	G	T	22	0.136	19	36.579	3.671	3	36.333	2.309	17	3	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--GL	chr10:39006344	G	NA	146	0	146	37.363	3.377	0	0	0	141	0	ACTR3BP5(dist=14973),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chr10:42384653	A	G	36	0.194	29	36.345	2.622	7	34.714	3.094	28	7	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--2	chr10:42384653	A	G	54	0.259	39	35.897	3.775	14	33.143	9.088	35	12	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--3	chr10:42384653	A	G	61	0.180	50	36.560	3.085	11	29.091	11.282	48	7	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--4	chr10:42384653	A	G	21	0.095	19	36.368	2.712	2	39.500	0.707	19	2	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--5	chr10:42384653	A	G	122	0.262	90	37.133	3.403	32	35.531	4.048	87	31	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--6	chr10:42384653	A	G	28	0.071	26	35.654	4.664	2	30.000	8.485	24	1	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--GL	chr10:42384653	A	NA	43	0	42	35.881	3.086	0	0	0	40	0	NONE(dist=NONE),LOC441666(dist=442661)	intergenic	NA
MB_Group4_T1--1	chr10:42647758	T	NA	25	0	25	36.440	4.925	0	0	0	24	0	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--2	chr10:42647758	T	C	55	0.055	52	37.154	4.151	3	37.667	3.512	50	3	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--3	chr10:42647758	T	C	96	0.073	89	36.742	6.293	7	32.000	8.944	82	5	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--4	chr10:42647758	T	C	20	0.350	13	38.846	2.075	7	35.857	2.193	13	7	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--5	chr10:42647758	T	C	62	0.048	59	38.119	2.422	3	38.667	3.215	59	3	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--6	chr10:42647758	T	NA	19	0	19	35.789	6.949	0	0	0	17	0	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--GL	chr10:42647758	T	NA	63	0	63	36.873	6.194	0	0	0	60	0	NONE(dist=NONE),LOC441666(dist=179556)	intergenic	NA
MB_Group4_T1--1	chr10:70231732	C	T	27	0.037	26	33.077	6.209	1	34.000	0.000	23	1	DNA2	upstream	NA
MB_Group4_T1--2	chr10:70231732	C	NA	24	0	24	34.250	2.111	0	0	0	23	0	DNA2	upstream	NA
MB_Group4_T1--3	chr10:70231732	C	T	78	0.013	76	33.803	5.514	1	34.000	0.000	61	1	DNA2	upstream	NA
MB_Group4_T1--4	chr10:70231732	C	T	13	0.231	10	36.900	2.998	3	33.333	2.082	10	3	DNA2	upstream	NA
MB_Group4_T1--5	chr10:70231732	C	NA	20	0	20	33.800	5.464	0	0	0	18	0	DNA2	upstream	NA
MB_Group4_T1--6	chr10:70231732	C	NA	17	0	17	32.941	6.768	0	0	0	14	0	DNA2	upstream	NA
MB_Group4_T1--GL	chr10:70231732	C	NA	60	0	60	34.583	4.102	0	0	0	56	0	DNA2	upstream	NA
MB_Group4_T1--1	chr10:75632841	C	T	70	0.200	56	36.911	4.772	14	36.500	2.473	52	14	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--2	chr10:75632841	C	NA	59	0	58	37.621	2.726	0	0	0	58	0	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--3	chr10:75632841	C	T	252	0.040	242	37.153	3.758	10	36.800	2.348	235	10	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--4	chr10:75632841	C	NA	39	0	39	36.923	3.064	0	0	0	38	0	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--5	chr10:75632841	C	NA	266	0	266	36.726	3.613	0	0	0	256	0	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--6	chr10:75632841	C	NA	27	0	27	37.519	4.080	0	0	0	26	0	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--GL	chr10:75632841	C	NA	105	0	105	37.019	4.363	0	0	0	100	0	CAMK2G	exonic	synonymous_SNV
MB_Group4_T1--1	chr10:86535592	T	C	18	0.278	13	36.308	3.614	5	37.200	2.490	12	5	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--2	chr10:86535592	T	C	28	0.107	25	37.760	3.562	3	38.667	2.082	24	3	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--3	chr10:86535592	T	C	25	0.040	24	37.958	2.820	1	37.000	0.000	24	1	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--4	chr10:86535592	T	C	28	0.036	26	37.038	4.591	1	37.000	0.000	25	1	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--5	chr10:86535592	T	C	60	0.033	57	37.298	4.066	2	36.500	3.536	54	2	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--6	chr10:86535592	T	NA	18	0	18	38.056	3.280	0	0	0	18	0	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--GL	chr10:86535592	T	NA	33	0	33	37.727	3.899	0	0	0	31	0	CCSER2(dist=257315),GRID1-AS1(dist=801896)	intergenic	NA
MB_Group4_T1--1	chr10:88821028	C	T	22	0.045	21	36.714	4.638	1	37.000	0.000	20	1	GLUD1	intronic	NA
MB_Group4_T1--2	chr10:88821028	C	T	17	0.294	12	37.917	4.337	5	36.400	2.608	11	5	GLUD1	intronic	NA
MB_Group4_T1--3	chr10:88821028	C	T	70	0.014	69	37.928	3.759	1	35.000	0.000	66	1	GLUD1	intronic	NA
MB_Group4_T1--4	chr10:88821028	C	NA	24	0	24	38.042	2.694	0	0	0	24	0	GLUD1	intronic	NA
MB_Group4_T1--5	chr10:88821028	C	T	57	0.035	55	38.091	3.176	2	36.000	1.414	53	2	GLUD1	intronic	NA
MB_Group4_T1--6	chr10:88821028	C	T	17	0.059	16	37.562	3.444	1	37.000	0.000	15	1	GLUD1	intronic	NA
MB_Group4_T1--GL	chr10:88821028	C	NA	87	0	86	37.151	5.103	0	0	0	80	0	GLUD1	intronic	NA
MB_Group4_T1--1	chr11:101362137	A	C	15	0.267	11	35.909	2.737	4	36.000	2.944	11	4	TRPC6	intronic	NA
MB_Group4_T1--2	chr11:101362137	A	NA	23	0	23	37.130	3.065	0	0	0	23	0	TRPC6	intronic	NA
MB_Group4_T1--3	chr11:101362137	A	C	56	0.018	54	35.815	4.872	1	39.000	0.000	50	1	TRPC6	intronic	NA
MB_Group4_T1--4	chr11:101362137	A	NA	15	0	15	34.933	3.863	0	0	0	14	0	TRPC6	intronic	NA
MB_Group4_T1--5	chr11:101362137	A	C	40	0.025	39	35.949	4.286	1	40.000	0.000	36	1	TRPC6	intronic	NA
MB_Group4_T1--6	chr11:101362137	A	NA	20	0	20	37.000	2.271	0	0	0	20	0	TRPC6	intronic	NA
MB_Group4_T1--GL	chr11:101362137	A	NA	73	0	73	36.918	4.310	0	0	0	71	0	TRPC6	intronic	NA
MB_Group4_T1--1	chr11:108121846	G	C	34	0.029	33	38.182	3.167	1	33.000	0.000	32	1	ATM	intronic	NA
MB_Group4_T1--2	chr11:108121846	G	C	32	0.156	27	38.704	2.880	5	39.000	0.000	27	5	ATM	intronic	NA
MB_Group4_T1--3	chr11:108121846	G	NA	83	0	83	37.578	4.345	0	0	0	80	0	ATM	intronic	NA
MB_Group4_T1--4	chr11:108121846	G	NA	25	0	25	39.000	2.236	0	0	0	25	0	ATM	intronic	NA
MB_Group4_T1--5	chr11:108121846	G	NA	16	0	16	38.625	2.500	0	0	0	16	0	ATM	intronic	NA
MB_Group4_T1--6	chr11:108121846	G	NA	14	0	14	37.357	2.620	0	0	0	14	0	ATM	intronic	NA
MB_Group4_T1--GL	chr11:108121846	G	NA	81	0	81	38.235	2.536	0	0	0	81	0	ATM	intronic	NA
MB_Group4_T1--1	chr11:117332175	C	A	11	0.091	10	37.900	3.143	1	38.000	0.000	10	1	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:117332175	C	NA	20	0	20	36.200	3.019	0	0	0	20	0	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:117332175	C	NA	108	0	108	36.963	2.979	0	0	0	106	0	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:117332175	C	NA	12	0	12	35.417	3.988	0	0	0	11	0	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:117332175	C	NA	40	0	40	36.650	2.878	0	0	0	40	0	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:117332175	C	A	17	0.235	13	36.923	4.406	4	36.250	0.500	12	4	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:117332175	C	NA	35	0	35	37.229	2.691	0	0	0	35	0	DSCAML1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:119156345	T	NA	19	0	19	37.158	3.270	0	0	0	19	0	CBL	intronic	NA
MB_Group4_T1--2	chr11:119156345	T	C	24	0.167	20	35.850	5.019	4	38.000	2.582	18	4	CBL	intronic	NA
MB_Group4_T1--3	chr11:119156345	T	NA	70	0	70	35.886	3.869	0	0	0	66	0	CBL	intronic	NA
MB_Group4_T1--4	chr11:119156345	T	NA	19	0	19	36.947	3.118	0	0	0	19	0	CBL	intronic	NA
MB_Group4_T1--5	chr11:119156345	T	C	36	0.056	34	35.294	5.982	2	37.000	2.828	31	2	CBL	intronic	NA
MB_Group4_T1--6	chr11:119156345	T	C	12	0.083	11	34.818	7.400	1	41.000	0.000	9	1	CBL	intronic	NA
MB_Group4_T1--GL	chr11:119156345	T	NA	69	0	68	36.044	3.088	0	0	0	65	0	CBL	intronic	NA
MB_Group4_T1--1	chr11:119988964	C	T	21	0.190	17	37.647	3.673	4	37.000	3.651	16	4	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:119988964	C	NA	18	0	18	36.333	3.343	0	0	0	18	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:119988964	C	NA	80	0	80	35.425	4.957	0	0	0	77	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:119988964	C	NA	11	0	11	36.000	5.158	0	0	0	10	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:119988964	C	NA	53	0	53	35.736	6.864	0	0	0	49	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:119988964	C	NA	11	0	11	37.636	2.767	0	0	0	11	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:119988964	C	NA	63	0	63	35.762	5.567	0	0	0	60	0	TRIM29	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:12248423	G	A	17	0.118	15	37.667	2.690	2	35.500	2.121	15	2	MICAL2	intronic	NA
MB_Group4_T1--2	chr11:12248423	G	A	15	0.067	14	37.429	3.567	1	37.000	0.000	14	1	MICAL2	intronic	NA
MB_Group4_T1--3	chr11:12248423	G	A	81	0.173	67	37.254	3.694	14	35.643	2.023	64	14	MICAL2	intronic	NA
MB_Group4_T1--4	chr11:12248423	G	NA	12	0	12	38.000	2.860	0	0	0	12	0	MICAL2	intronic	NA
MB_Group4_T1--5	chr11:12248423	G	A	50	0.320	33	37.152	3.280	16	35.125	2.391	32	16	MICAL2	intronic	NA
MB_Group4_T1--6	chr11:12248423	G	NA	13	0	13	38.385	2.567	0	0	0	13	0	MICAL2	intronic	NA
MB_Group4_T1--GL	chr11:12248423	G	NA	55	0	55	37.564	3.137	0	0	0	54	0	MICAL2	intronic	NA
MB_Group4_T1--1	chr11:12248425	T	A	17	0.118	15	37.400	2.444	2	37.000	0.000	15	2	MICAL2	intronic	NA
MB_Group4_T1--2	chr11:12248425	T	A	15	0.067	14	35.357	6.767	1	37.000	0.000	11	1	MICAL2	intronic	NA
MB_Group4_T1--3	chr11:12248425	T	A	82	0.171	68	36.985	4.138	14	36.071	2.433	66	13	MICAL2	intronic	NA
MB_Group4_T1--4	chr11:12248425	T	NA	12	0	12	37.417	3.528	0	0	0	12	0	MICAL2	intronic	NA
MB_Group4_T1--5	chr11:12248425	T	A	50	0.340	33	36.091	6.405	17	36.294	1.213	31	17	MICAL2	intronic	NA
MB_Group4_T1--6	chr11:12248425	T	NA	14	0	14	37.929	3.316	0	0	0	14	0	MICAL2	intronic	NA
MB_Group4_T1--GL	chr11:12248425	T	NA	55	0	55	37.000	4.123	0	0	0	52	0	MICAL2	intronic	NA
MB_Group4_T1--1	chr11:123900673	G	C	59	0.153	50	36.920	3.282	9	36.333	1.414	49	9	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:123900673	G	C	45	0.200	36	34.778	5.627	9	35.667	3.640	34	8	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:123900673	G	C	142	0.092	129	37.023	4.026	13	36.846	0.555	125	13	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:123900673	G	C	31	0.032	30	36.967	4.902	1	35.000	0.000	28	1	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:123900673	G	C	66	0.091	60	36.300	5.350	6	36.667	0.816	56	6	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:123900673	G	C	34	0.029	33	36.848	6.241	1	37.000	0.000	31	1	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:123900673	G	NA	65	0	65	37.123	3.895	0	0	0	64	0	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:123900674	G	A	59	0.153	49	35.980	5.911	9	35.556	2.963	46	8	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:123900674	G	A	45	0.200	36	33.944	5.275	9	36.556	0.882	31	9	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:123900674	G	A	140	0.093	127	36.701	4.299	13	36.308	1.109	120	13	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:123900674	G	A	31	0.032	30	37.000	3.523	1	35.000	0.000	29	1	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:123900674	G	A	66	0.091	59	36.271	5.232	6	35.500	3.674	56	5	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:123900674	G	A	34	0.029	33	35.636	6.818	1	37.000	0.000	30	1	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:123900674	G	NA	64	0	64	36.797	3.334	0	0	0	62	0	OR10G8	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:123901027	A	G	38	0.342	24	37.375	4.342	13	35.692	2.750	22	12	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:123901027	A	G	44	0.159	37	37.595	2.466	7	35.857	1.574	37	7	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:123901027	A	G	104	0.115	92	35.674	6.532	12	35.750	3.415	84	11	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:123901027	A	G	38	0.105	34	37.529	3.305	4	36.500	1.000	33	4	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:123901027	A	G	49	0.265	36	37.278	4.274	13	37.000	0.816	34	13	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:123901027	A	G	20	0.350	13	37.077	3.730	7	37.143	1.464	13	7	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:123901027	A	NA	59	0	59	37.407	5.311	0	0	0	56	0	OR10G8	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:123908827	T	C	35	0.229	27	38.667	3.187	8	36.500	0.926	26	8	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:123908827	T	C	21	0.333	14	36.000	6.051	7	34.429	4.237	12	6	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:123908827	T	C	79	0.253	59	38.475	3.287	20	36.950	1.234	59	20	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:123908827	T	C	23	0.130	20	37.000	7.218	3	36.333	1.155	19	3	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:123908827	T	C	32	0.188	26	35.500	6.784	6	37.333	0.816	23	6	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:123908827	T	C	11	0.273	8	37.000	4.243	3	37.000	0.000	8	3	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:123908827	T	NA	38	0	38	37.368	4.450	0	0	0	35	0	OR10G7	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:123909011	C	T	60	0.217	47	35.191	6.296	13	36.231	1.013	41	13	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:123909011	C	T	47	0.170	39	36.179	6.813	8	36.625	1.996	34	8	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:123909011	C	T	173	0.064	162	37.531	3.912	11	37.000	1.549	156	11	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:123909011	C	T	44	0.159	37	36.919	3.370	7	36.143	2.478	35	7	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:123909011	C	T	76	0.224	59	36.746	3.831	17	36.353	2.290	57	17	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:123909011	C	NA	18	0	18	37.500	3.092	0	0	0	17	0	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:123909011	C	NA	65	0	65	34.954	8.656	0	0	0	58	0	OR10G7	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:125873674	T	C	26	0.077	24	34.375	6.099	2	35.500	2.121	21	2	CDON	intronic	NA
MB_Group4_T1--2	chr11:125873674	T	C	22	0.045	21	35.905	2.998	1	39.000	0.000	21	1	CDON	intronic	NA
MB_Group4_T1--3	chr11:125873674	T	NA	49	0	49	36.122	4.096	0	0	0	48	0	CDON	intronic	NA
MB_Group4_T1--4	chr11:125873674	T	NA	24	0	24	36.208	3.623	0	0	0	23	0	CDON	intronic	NA
MB_Group4_T1--5	chr11:125873674	T	C	28	0.250	21	36.667	3.291	7	36.714	0.756	21	7	CDON	intronic	NA
MB_Group4_T1--6	chr11:125873674	T	NA	11	0	11	33.545	4.251	0	0	0	9	0	CDON	intronic	NA
MB_Group4_T1--GL	chr11:125873674	T	NA	92	0	92	35.511	4.110	0	0	0	86	0	CDON	intronic	NA
MB_Group4_T1--1	chr1:113121140	A	NA	15	0	15	36.600	4.014	0	0	0	14	0	ST7L	intronic	NA
MB_Group4_T1--2	chr1:113121140	A	NA	17	0	17	37.941	2.221	0	0	0	17	0	ST7L	intronic	NA
MB_Group4_T1--3	chr1:113121140	A	NA	32	0	32	38.406	3.057	0	0	0	32	0	ST7L	intronic	NA
MB_Group4_T1--4	chr1:113121140	A	NA	12	0	12	38.583	1.564	0	0	0	12	0	ST7L	intronic	NA
MB_Group4_T1--5	chr1:113121140	A	G	35	0.143	30	38.367	2.760	5	36.600	0.894	29	5	ST7L	intronic	NA
MB_Group4_T1--6	chr1:113121140	A	G	14	0.071	13	37.308	3.860	1	37.000	0.000	12	1	ST7L	intronic	NA
MB_Group4_T1--GL	chr1:113121140	A	NA	42	0	42	38.952	2.337	0	0	0	42	0	ST7L	intronic	NA
MB_Group4_T1--1	chr11:134118382	C	A	106	0.066	99	32.838	6.279	7	34.429	1.512	73	7	THYN1	intronic	NA
MB_Group4_T1--2	chr11:134118382	C	A	63	0.063	59	32.627	7.414	4	34.750	1.258	46	4	THYN1	intronic	NA
MB_Group4_T1--3	chr11:134118382	C	A	207	0.116	183	31.929	7.112	24	34.417	1.248	133	24	THYN1	intronic	NA
MB_Group4_T1--4	chr11:134118382	C	NA	39	0	38	32.211	7.715	0	0	0	29	0	THYN1	intronic	NA
MB_Group4_T1--5	chr11:134118382	C	A	62	0.113	55	29.673	8.859	7	33.857	1.574	36	7	THYN1	intronic	NA
MB_Group4_T1--6	chr11:134118382	C	A	39	0.179	32	34.344	4.583	7	34.000	2.769	27	6	THYN1	intronic	NA
MB_Group4_T1--GL	chr11:134118382	C	NA	162	0	159	29.975	8.498	0	0	0	105	0	THYN1	intronic	NA
MB_Group4_T1--1	chr11:1643057	C	T	24	0.083	22	34.545	5.244	2	29.000	4.243	19	1	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:1643057	C	T	20	0.200	16	33.250	6.557	4	37.000	0.000	12	4	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:1643057	C	T	97	0.041	92	34.565	4.109	4	36.500	1.000	83	4	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:1643057	C	NA	15	0	15	33.400	6.501	0	0	0	12	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:1643057	C	T	67	0.045	64	32.438	7.329	3	36.333	1.155	50	3	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:1643057	C	NA	18	0	18	32.444	7.838	0	0	0	14	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:1643057	C	NA	41	0	41	32.976	6.166	0	0	0	34	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:1643059	C	T	25	0.080	23	34.261	5.038	2	36.000	1.414	21	2	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:1643059	C	T	22	0.182	18	35.722	4.860	4	36.500	1.000	17	4	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:1643059	C	T	104	0.038	100	33.940	5.295	4	37.000	0.000	93	4	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:1643059	C	NA	15	0	15	32.867	9.187	0	0	0	13	0	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:1643059	C	T	67	0.045	64	34.078	4.691	3	35.333	2.887	57	3	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:1643059	C	NA	19	0	19	33.368	5.123	0	0	0	16	0	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:1643059	C	NA	41	0	41	33.659	4.287	0	0	0	36	0	KRTAP5-4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:1643237	C	T	40	0.125	35	32.629	6.208	5	35.200	1.095	24	5	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:1643237	C	T	28	0.071	25	33.120	6.240	2	32.000	4.243	21	1	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:1643237	C	NA	95	0	95	33.116	7.430	0	0	0	76	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:1643237	C	T	17	0.235	13	28.923	10.079	4	32.750	5.058	7	3	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:1643237	C	T	44	0.023	43	36.279	4.295	1	37.000	0.000	40	1	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:1643237	C	NA	16	0	16	32.812	8.689	0	0	0	13	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:1643237	C	NA	48	0	48	34.354	6.142	0	0	0	42	0	KRTAP5-4	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:18319383	C	T	13	0.308	9	33.444	10.175	4	30.250	13.500	8	3	HPS5	intronic	NA
MB_Group4_T1--2	chr11:18319383	C	T	10	0.200	8	34.625	2.669	2	35.000	2.828	8	2	HPS5	intronic	NA
MB_Group4_T1--3	chr11:18319383	C	T	44	0.114	39	35.923	4.463	5	35.600	3.130	37	5	HPS5	intronic	NA
MB_Group4_T1--4	chr11:18319383	C	T	11	0.091	10	34.400	3.502	1	35.000	0.000	9	1	HPS5	intronic	NA
MB_Group4_T1--5	chr11:18319383	C	T	41	0.195	33	37.000	3.354	8	35.875	3.182	32	7	HPS5	intronic	NA
MB_Group4_T1--6	chr11:18319383	C	NA	10	0	10	36.900	2.601	0	0	0	10	0	HPS5	intronic	NA
MB_Group4_T1--GL	chr11:18319383	C	NA	33	0	33	36.121	3.612	0	0	0	32	0	HPS5	intronic	NA
MB_Group4_T1--1	chr1:11852258	C	NA	24	0	24	37.458	3.401	0	0	0	23	0	MTHFR	intronic	NA
MB_Group4_T1--2	chr1:11852258	C	T	15	0.200	12	38.500	2.908	3	38.000	2.646	12	3	MTHFR	intronic	NA
MB_Group4_T1--3	chr1:11852258	C	NA	175	0	175	37.074	5.516	0	0	0	166	0	MTHFR	intronic	NA
MB_Group4_T1--4	chr1:11852258	C	NA	13	0	13	38.077	2.499	0	0	0	13	0	MTHFR	intronic	NA
MB_Group4_T1--5	chr1:11852258	C	T	93	0.011	92	37.576	4.572	1	40.000	0.000	89	1	MTHFR	intronic	NA
MB_Group4_T1--6	chr1:11852258	C	NA	12	0	12	38.417	2.811	0	0	0	12	0	MTHFR	intronic	NA
MB_Group4_T1--GL	chr1:11852258	C	NA	79	0	79	36.924	5.015	0	0	0	76	0	MTHFR	intronic	NA
MB_Group4_T1--1	chr11:31812503	C	A	26	0.154	22	35.727	5.675	4	36.500	5.745	20	3	PAX6	intronic	NA
MB_Group4_T1--2	chr11:31812503	C	NA	26	0	26	37.654	3.187	0	0	0	26	0	PAX6	intronic	NA
MB_Group4_T1--3	chr11:31812503	C	NA	91	0	91	36.429	4.308	0	0	0	83	0	PAX6	intronic	NA
MB_Group4_T1--4	chr11:31812503	C	NA	30	0	30	36.633	5.423	0	0	0	29	0	PAX6	intronic	NA
MB_Group4_T1--5	chr11:31812503	C	NA	15	0	15	35.467	4.719	0	0	0	13	0	PAX6	intronic	NA
MB_Group4_T1--6	chr11:31812503	C	NA	19	0	19	37.316	2.926	0	0	0	19	0	PAX6	intronic	NA
MB_Group4_T1--GL	chr11:31812503	C	NA	82	0	82	35.683	4.701	0	0	0	77	0	PAX6	intronic	NA
MB_Group4_T1--1	chr11:403758	C	A	52	0.327	35	35.143	4.209	17	36.353	3.790	33	16	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:403758	C	NA	32	0	32	35.219	2.446	0	0	0	31	0	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:403758	C	A	147	0.014	144	35.674	3.072	2	39.000	2.828	139	2	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:403758	C	NA	13	0	13	33.308	7.931	0	0	0	11	0	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:403758	C	NA	175	0	175	34.851	3.824	0	0	0	163	0	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:403758	C	NA	27	0	26	34.885	6.308	0	0	0	24	0	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:403758	C	NA	58	0	58	34.845	4.491	0	0	0	54	0	PKP3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:148011292	G	C	39	0.436	22	35.091	4.566	17	30.706	9.019	20	15	NBPF8	intronic	NA
MB_Group4_T1--2	chr1:148011292	G	C	43	0.023	42	34.405	7.309	1	33.000	0.000	37	1	NBPF8	intronic	NA
MB_Group4_T1--3	chr1:148011292	G	C	97	0.010	96	35.969	4.906	1	32.000	0.000	90	1	NBPF8	intronic	NA
MB_Group4_T1--4	chr1:148011292	G	NA	25	0	25	35.200	5.393	0	0	0	23	0	NBPF8	intronic	NA
MB_Group4_T1--5	chr1:148011292	G	C	45	0.267	33	36.455	3.299	12	34.417	2.644	33	12	NBPF8	intronic	NA
MB_Group4_T1--6	chr1:148011292	G	NA	21	0	21	36.810	4.355	0	0	0	19	0	NBPF8	intronic	NA
MB_Group4_T1--GL	chr1:148011292	G	NA	95	0	94	36.426	3.611	0	0	0	93	0	NBPF8	intronic	NA
MB_Group4_T1--1	chr11:48997155	C	NA	49	0	49	36.347	4.973	0	0	0	46	0	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--2	chr11:48997155	C	T	51	0.137	44	35.409	8.013	7	37.000	2.000	39	7	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--3	chr11:48997155	C	NA	157	0	157	36.675	4.891	0	0	0	147	0	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--4	chr11:48997155	C	T	49	0.020	48	36.271	3.956	1	34.000	0.000	45	1	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--5	chr11:48997155	C	NA	27	0	27	36.111	5.938	0	0	0	25	0	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--6	chr11:48997155	C	NA	22	0	21	38.476	1.965	0	0	0	21	0	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--GL	chr11:48997155	C	NA	176	0	175	36.326	4.916	0	0	0	165	0	OR4A47(dist=485881),TRIM49B(dist=55997)	intergenic	NA
MB_Group4_T1--1	chr1:149093642	A	NA	16	0	16	36.250	4.187	0	0	0	15	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--2	chr1:149093642	A	NA	11	0	11	37.545	3.560	0	0	0	11	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--3	chr1:149093642	A	NA	52	0	52	37.173	3.874	0	0	0	50	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--4	chr1:149093642	A	NA	16	0	16	36.875	3.828	0	0	0	16	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--5	chr1:149093642	A	C	15	0.200	12	38.833	2.657	3	37.333	2.517	12	3	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--6	chr1:149093642	A	NA	14	0	14	37.214	2.547	0	0	0	14	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--GL	chr1:149093642	A	NA	50	0	50	37.380	4.257	0	0	0	47	0	NBPF25P	ncRNA_intronic	NA
MB_Group4_T1--1	chr1:151317828	A	G	16	0.188	13	36.615	2.599	3	37.667	1.155	13	3	RFX5	intronic	NA
MB_Group4_T1--2	chr1:151317828	A	G	23	0.304	16	34.250	8.218	7	36.714	0.756	14	7	RFX5	intronic	NA
MB_Group4_T1--3	chr1:151317828	A	G	99	0.030	95	35.158	5.734	3	37.000	0.000	85	3	RFX5	intronic	NA
MB_Group4_T1--4	chr1:151317828	A	NA	12	0	12	35.000	6.396	0	0	0	11	0	RFX5	intronic	NA
MB_Group4_T1--5	chr1:151317828	A	G	81	0.086	74	35.635	5.433	7	37.000	0.000	68	7	RFX5	intronic	NA
MB_Group4_T1--6	chr1:151317828	A	G	18	0.222	14	35.000	6.076	4	34.000	3.559	13	4	RFX5	intronic	NA
MB_Group4_T1--GL	chr1:151317828	A	NA	41	0	40	35.475	4.132	0	0	0	38	0	RFX5	intronic	NA
MB_Group4_T1--1	chr1:151317829	C	T	16	0.250	12	38.000	2.412	4	37.250	0.500	12	4	RFX5	intronic	NA
MB_Group4_T1--2	chr1:151317829	C	T	23	0.304	16	37.375	3.810	7	37.000	0.000	15	7	RFX5	intronic	NA
MB_Group4_T1--3	chr1:151317829	C	T	99	0.040	94	36.830	4.550	4	36.500	1.000	87	4	RFX5	intronic	NA
MB_Group4_T1--4	chr1:151317829	C	NA	12	0	12	37.167	2.758	0	0	0	12	0	RFX5	intronic	NA
MB_Group4_T1--5	chr1:151317829	C	T	82	0.098	74	37.176	4.991	8	37.000	0.000	72	8	RFX5	intronic	NA
MB_Group4_T1--6	chr1:151317829	C	T	17	0.235	13	35.538	9.079	4	37.000	0.000	11	4	RFX5	intronic	NA
MB_Group4_T1--GL	chr1:151317829	C	NA	41	0	41	37.610	2.397	0	0	0	41	0	RFX5	intronic	NA
MB_Group4_T1--1	chr1:152084213	C	G	75	0.200	57	34.684	4.513	15	33.933	3.058	51	14	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:152084213	C	NA	50	0	50	33.760	5.442	0	0	0	44	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:152084213	C	NA	195	0	195	34.472	4.591	0	0	0	176	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:152084213	C	NA	20	0	20	34.950	4.989	0	0	0	19	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:152084213	C	NA	139	0	138	34.297	4.496	0	0	0	124	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:152084213	C	NA	38	0	38	34.237	5.309	0	0	0	34	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:152084213	C	NA	118	0	117	33.419	5.610	0	0	0	94	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:152084216	C	G	72	0.181	57	35.719	3.726	13	32.769	2.587	54	11	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:152084216	C	NA	44	0	44	34.091	4.604	0	0	0	39	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:152084216	C	NA	191	0	190	35.121	4.028	0	0	0	175	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:152084216	C	NA	21	0	21	34.905	4.592	0	0	0	18	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:152084216	C	NA	130	0	129	34.225	4.956	0	0	0	111	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:152084216	C	NA	35	0	35	34.457	3.649	0	0	0	32	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:152084216	C	NA	109	0	108	33.315	6.088	0	0	0	89	0	TCHH	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:152129087	T	NA	46	0	17	38.294	3.255	0	0	0	16	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:152129087	T	NA	41	0	23	37.565	3.501	0	0	0	23	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:152129087	T	NA	157	0	61	37.049	3.681	0	0	0	58	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:152129087	T	NA	31	0	20	36.900	3.243	0	0	0	20	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:152129087	T	NA	31	0	16	37.750	2.671	0	0	0	16	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:152129087	T	C	23	0.565	10	36.400	3.204	13	35.692	5.040	10	12	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:152129087	T	NA	135	0	73	36.740	4.369	0	0	0	67	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:152129094	A	NA	47	0	18	36.556	4.062	0	0	0	17	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:152129094	A	NA	41	0	23	37.130	2.651	0	0	0	23	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:152129094	A	NA	157	0	60	35.883	5.240	0	0	0	56	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:152129094	A	NA	31	0	20	35.450	4.110	0	0	0	18	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:152129094	A	NA	32	0	17	35.118	4.372	0	0	0	15	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:152129094	A	G	20	0.450	11	35.545	3.882	9	35.333	4.031	10	8	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:152129094	A	NA	131	0	69	35.464	5.389	0	0	0	59	0	RPTN	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:152777634	G	T	38	0.263	27	36.111	7.154	10	36.300	1.160	24	10	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:152777634	G	T	33	0.121	29	37.276	3.172	4	37.250	2.062	28	4	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:152777634	G	T	148	0.047	141	35.660	6.439	7	32.714	11.339	126	6	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:152777634	G	T	19	0.211	15	36.733	4.183	4	36.500	1.000	14	4	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:152777634	G	T	80	0.075	72	36.556	5.124	6	35.500	3.674	69	5	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:152777634	G	T	20	0.150	17	37.588	2.451	3	36.333	1.155	17	3	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:152777634	G	NA	39	0	39	36.513	3.060	0	0	0	38	0	LCE1C	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:152777979	A	G	66	0.061	62	37.984	3.787	4	36.750	3.686	60	4	LCE1C	intronic	NA
MB_Group4_T1--2	chr1:152777979	A	G	60	0.183	49	35.878	6.688	11	36.818	0.603	43	11	LCE1C	intronic	NA
MB_Group4_T1--3	chr1:152777979	A	G	167	0.054	158	37.316	5.201	9	36.667	3.000	149	9	LCE1C	intronic	NA
MB_Group4_T1--4	chr1:152777979	A	G	29	0.034	28	36.821	5.525	1	37.000	0.000	25	1	LCE1C	intronic	NA
MB_Group4_T1--5	chr1:152777979	A	G	114	0.096	103	37.437	4.750	11	36.455	1.293	96	11	LCE1C	intronic	NA
MB_Group4_T1--6	chr1:152777979	A	NA	28	0	28	37.393	4.211	0	0	0	26	0	LCE1C	intronic	NA
MB_Group4_T1--GL	chr1:152777979	A	NA	53	0	53	37.151	4.444	0	0	0	49	0	LCE1C	intronic	NA
MB_Group4_T1--1	chr1:152784877	A	G	55	0.055	52	36.308	3.868	3	38.667	0.577	50	3	LCE1B	UTR5	NA
MB_Group4_T1--2	chr1:152784877	A	G	39	0.205	31	37.452	2.644	8	37.875	1.458	31	8	LCE1B	UTR5	NA
MB_Group4_T1--3	chr1:152784877	A	G	159	0.025	155	36.187	4.504	4	37.500	3.000	146	4	LCE1B	UTR5	NA
MB_Group4_T1--4	chr1:152784877	A	NA	22	0	22	36.227	3.463	0	0	0	21	0	LCE1B	UTR5	NA
MB_Group4_T1--5	chr1:152784877	A	G	76	0.158	64	35.344	5.547	12	34.000	9.844	59	10	LCE1B	UTR5	NA
MB_Group4_T1--6	chr1:152784877	A	G	20	0.050	19	36.842	2.363	1	39.000	0.000	19	1	LCE1B	UTR5	NA
MB_Group4_T1--GL	chr1:152784877	A	NA	51	0	51	36.588	4.401	0	0	0	49	0	LCE1B	UTR5	NA
MB_Group4_T1--1	chr1:152785222	C	G	42	0.071	39	35.718	7.236	3	36.333	1.155	36	3	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:152785222	C	NA	47	0	46	36.326	7.140	0	0	0	41	0	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:152785222	C	G	167	0.012	164	37.287	4.331	2	40.000	1.414	159	2	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:152785222	C	G	23	0.130	20	37.500	3.818	3	37.000	0.000	19	3	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:152785222	C	G	85	0.118	73	37.411	3.833	10	36.100	3.107	70	10	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:152785222	C	G	24	0.292	17	37.235	3.192	7	36.571	3.259	17	7	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:152785222	C	NA	44	0	43	36.605	5.373	0	0	0	40	0	LCE1B	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:154988213	C	NA	42	0	42	35.619	3.131	0	0	0	41	0	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:154988213	C	A	20	0.200	16	34.812	4.215	4	37.250	2.872	14	4	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:154988213	C	A	223	0.009	221	35.389	5.222	2	33.500	0.707	203	2	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:154988213	C	NA	10	0	10	34.700	3.622	0	0	0	9	0	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:154988213	C	NA	192	0	192	35.010	5.036	0	0	0	174	0	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:154988213	C	NA	26	0	26	35.731	4.285	0	0	0	24	0	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:154988213	C	NA	59	0	59	35.492	4.309	0	0	0	57	0	ZBTB7B	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:56216888	C	T	32	0.031	31	36.806	2.762	1	37.000	0.000	31	1	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--2	chr11:56216888	C	T	25	0.320	17	35.765	4.480	8	37.000	2.138	15	8	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--3	chr11:56216888	C	T	53	0.038	50	35.980	4.779	2	36.000	1.414	44	2	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--4	chr11:56216888	C	T	20	0.150	17	36.765	2.796	3	37.000	0.000	17	3	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--5	chr11:56216888	C	T	14	0.214	11	37.727	3.663	3	35.000	2.646	10	3	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--6	chr11:56216888	C	T	25	0.080	23	35.957	6.034	2	36.500	0.707	21	2	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--GL	chr11:56216888	C	NA	46	0	46	37.587	2.671	0	0	0	46	0	OR5R1(dist=31180),OR5M9(dist=13057)	intergenic	NA
MB_Group4_T1--1	chr11:5653604	T	NA	29	0	29	37.276	4.122	0	0	0	28	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:5653604	T	NA	23	0	23	38.391	3.354	0	0	0	22	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:5653604	T	NA	89	0	89	35.978	5.429	0	0	0	83	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:5653604	T	NA	20	0	20	36.000	5.390	0	0	0	18	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:5653604	T	NA	18	0	18	36.444	4.462	0	0	0	16	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:5653604	T	C	13	0.231	10	38.000	3.944	3	33.667	2.309	10	3	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:5653604	T	NA	86	0	86	37.035	4.313	0	0	0	81	0	TRIM34,TRIM6-TRIM34	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57254561	C	NA	30	0	30	32.700	5.331	0	0	0	24	0	SLC43A1	intronic	NA
MB_Group4_T1--2	chr11:57254561	C	A	14	0.214	11	30.818	8.807	3	38.667	3.215	8	3	SLC43A1	intronic	NA
MB_Group4_T1--3	chr11:57254561	C	NA	100	0	100	32.690	6.951	0	0	0	77	0	SLC43A1	intronic	NA
MB_Group4_T1--4	chr11:57254561	C	NA	14	0	14	31.429	6.489	0	0	0	10	0	SLC43A1	intronic	NA
MB_Group4_T1--5	chr11:57254561	C	NA	47	0	47	33.681	6.311	0	0	0	41	0	SLC43A1	intronic	NA
MB_Group4_T1--6	chr11:57254561	C	NA	23	0	23	34.217	3.717	0	0	0	20	0	SLC43A1	intronic	NA
MB_Group4_T1--GL	chr11:57254561	C	NA	57	0	57	34.140	5.795	0	0	0	48	0	SLC43A1	intronic	NA
MB_Group4_T1--1	chr11:57971457	A	G	132	0.227	102	37.108	3.707	30	36.400	1.303	98	30	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57971457	A	G	107	0.318	73	37.411	2.597	34	36.000	3.247	72	33	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57971457	A	G	227	0.123	199	37.372	3.715	28	36.357	2.376	193	27	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57971457	A	G	81	0.160	68	37.265	3.322	13	36.538	0.877	66	13	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57971457	A	G	82	0.244	62	36.855	4.223	20	36.150	2.183	58	19	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57971457	A	G	43	0.256	32	36.875	3.462	11	36.636	0.809	30	11	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57971457	A	NA	132	0	131	37.366	4.299	0	0	0	125	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57971641	A	T	46	0.174	35	36.000	5.709	8	36.625	0.744	33	8	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57971641	A	T	46	0.174	35	36.000	5.709	8	36.625	0.744	33	8	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57971641	A	NA	46	0	33	36.030	5.632	0	0	0	31	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57971641	A	NA	46	0	33	36.030	5.632	0	0	0	31	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57971641	A	NA	81	0	58	36.362	2.936	0	0	0	56	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57971641	A	NA	81	0	58	36.362	2.936	0	0	0	56	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57971641	A	T	28	0.143	21	36.952	2.500	4	37.000	0.000	21	4	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57971641	A	T	28	0.143	21	36.952	2.500	4	37.000	0.000	21	4	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57971641	A	T	28	0.071	25	34.920	6.922	2	37.000	0.000	22	2	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57971641	A	T	28	0.071	25	34.920	6.922	2	37.000	0.000	22	2	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57971641	A	NA	21	0	16	36.062	4.155	0	0	0	14	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57971641	A	NA	21	0	16	36.062	4.155	0	0	0	14	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57971641	A	NA	51	0	51	36.569	4.843	0	0	0	48	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57971641	A	NA	51	0	51	36.569	4.843	0	0	0	48	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57971642	C	A	46	0.239	35	38.857	2.992	11	37.000	0.000	34	11	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57971642	C	A	46	0.261	34	38.206	2.750	12	37.000	0.000	34	12	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57971642	C	A	81	0.284	58	38.603	2.435	23	36.565	1.343	57	23	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57971642	C	A	28	0.250	21	38.333	2.352	7	36.714	0.756	21	7	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57971642	C	A	28	0.107	25	38.080	2.957	3	37.000	0.000	24	3	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57971642	C	A	21	0.238	16	37.625	3.538	5	37.000	0.000	16	5	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57971642	C	NA	51	0	51	38.490	4.451	0	0	0	49	0	OR1S2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57982228	T	G	57	0.088	52	38.212	3.298	5	37.000	0.000	51	5	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57982228	T	G	36	0.222	28	37.964	2.937	8	37.000	0.000	27	8	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57982228	T	G	99	0.101	89	38.045	2.836	10	36.800	0.632	88	10	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57982228	T	G	19	0.053	18	38.444	2.307	1	37.000	0.000	18	1	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57982228	T	G	36	0.111	32	38.469	2.032	4	37.000	0.000	32	4	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57982228	T	G	22	0.227	17	38.294	2.568	5	36.600	0.894	17	5	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57982228	T	NA	66	0	66	38.788	3.046	0	0	0	66	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57982247	G	A	69	0.101	62	38.145	3.793	7	35.857	5.113	59	6	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57982247	G	A	48	0.167	39	37.641	4.976	8	37.000	1.069	37	8	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57982247	G	A	112	0.080	103	37.990	4.460	9	36.778	0.667	98	9	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57982247	G	A	24	0.125	21	37.857	3.214	3	38.000	1.000	20	3	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57982247	G	A	44	0.091	40	38.925	2.379	4	37.000	0.000	40	4	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57982247	G	A	24	0.083	22	40.136	1.490	2	37.000	0.000	22	2	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57982247	G	NA	69	0	69	38.493	2.638	0	0	0	69	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57982266	G	A	107	0.224	83	36.855	4.085	24	36.500	1.934	79	24	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57982266	G	A	78	0.154	66	37.667	3.681	12	36.083	1.165	63	12	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57982266	G	A	139	0.129	121	37.777	3.968	18	36.500	1.098	117	18	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57982266	G	A	37	0.270	27	37.556	3.286	10	36.400	0.966	27	10	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57982266	G	A	56	0.179	46	38.391	2.871	10	36.400	0.966	46	10	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57982266	G	A	34	0.147	29	38.552	3.897	5	36.800	0.447	27	5	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57982266	G	NA	82	0	82	37.232	2.886	0	0	0	81	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57982413	C	T	124	0.129	107	37.037	3.824	16	36.562	0.814	102	16	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57982413	C	T	117	0.128	102	36.578	3.185	15	36.733	0.704	98	15	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57982413	C	T	259	0.120	226	36.801	4.671	31	36.323	1.815	212	30	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57982413	C	T	79	0.101	71	36.479	4.931	8	36.250	1.035	67	8	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57982413	C	T	94	0.160	79	36.608	4.510	15	35.933	2.154	75	15	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57982413	C	T	51	0.098	46	37.674	2.789	5	37.000	0.000	44	5	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57982413	C	NA	193	0	192	36.958	3.876	0	0	0	184	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57982414	G	A	124	0.129	108	36.565	3.644	16	36.250	1.238	102	16	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:57982414	G	A	117	0.128	102	36.696	2.489	15	35.933	3.105	100	14	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:57982414	G	A	257	0.125	225	36.711	4.328	32	36.125	2.106	215	31	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:57982414	G	A	79	0.101	71	36.099	5.023	8	35.375	1.685	66	8	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:57982414	G	A	94	0.160	79	36.316	4.570	15	36.133	1.885	74	15	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:57982414	G	A	51	0.098	46	37.761	2.469	5	37.000	0.000	46	5	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:57982414	G	NA	193	0	192	37.026	4.087	0	0	0	188	0	OR1S1	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:57982934	A	G	121	0.157	101	37.980	2.631	19	35.579	6.230	101	18	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57982934	A	G	96	0.146	82	37.659	4.278	14	37.357	1.447	78	14	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57982934	A	G	261	0.080	240	36.888	4.687	21	37.143	1.276	229	21	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57982934	A	G	90	0.089	82	37.829	4.505	8	36.625	2.504	79	8	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57982934	A	G	77	0.169	64	36.984	3.480	13	36.385	1.502	62	13	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57982934	A	G	75	0.107	66	36.939	5.392	8	36.250	2.866	60	8	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57982934	A	NA	169	0	169	37.231	3.577	0	0	0	164	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57983110	A	G	67	0.284	48	36.792	2.625	19	33.947	5.788	48	17	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:57983110	A	G	75	0.267	55	36.345	4.356	20	36.000	2.077	52	20	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:57983110	A	G	142	0.197	114	37.123	3.283	28	36.179	1.847	112	28	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:57983110	A	G	43	0.302	30	36.767	2.712	13	34.615	8.500	30	12	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:57983110	A	G	46	0.304	32	36.562	3.262	14	36.500	1.698	31	14	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:57983110	A	G	29	0.103	26	37.885	2.422	3	36.333	1.155	26	3	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:57983110	A	NA	81	0	81	36.494	4.927	0	0	0	74	0	OR1S1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:57983205	C	A	42	0.214	33	38.091	2.614	9	32.000	7.228	33	7	OR1S1	downstream	NA
MB_Group4_T1--2	chr11:57983205	C	A	39	0.308	27	36.519	4.032	12	34.917	7.657	25	11	OR1S1	downstream	NA
MB_Group4_T1--3	chr11:57983205	C	A	73	0.068	68	37.324	4.331	5	36.800	0.447	64	5	OR1S1	downstream	NA
MB_Group4_T1--4	chr11:57983205	C	A	23	0.174	19	38.158	2.853	4	37.500	2.517	19	4	OR1S1	downstream	NA
MB_Group4_T1--5	chr11:57983205	C	A	22	0.091	20	35.300	6.530	2	37.000	0.000	18	2	OR1S1	downstream	NA
MB_Group4_T1--6	chr11:57983205	C	A	17	0.176	14	35.929	5.269	3	36.333	1.155	12	3	OR1S1	downstream	NA
MB_Group4_T1--GL	chr11:57983205	C	NA	37	0	37	37.432	5.781	0	0	0	35	0	OR1S1	downstream	NA
MB_Group4_T1--1	chr1:15863399	A	G	31	0.032	30	34.967	5.411	1	37.000	0.000	26	1	DNAJC16	intronic	NA
MB_Group4_T1--2	chr1:15863399	A	G	24	0.125	21	34.000	6.693	3	37.000	1.732	17	3	DNAJC16	intronic	NA
MB_Group4_T1--3	chr1:15863399	A	NA	50	0	50	36.060	4.292	0	0	0	47	0	DNAJC16	intronic	NA
MB_Group4_T1--4	chr1:15863399	A	G	11	0.273	8	38.250	1.581	3	33.333	3.215	8	3	DNAJC16	intronic	NA
MB_Group4_T1--5	chr1:15863399	A	G	102	0.088	93	34.559	6.482	9	33.778	8.941	83	8	DNAJC16	intronic	NA
MB_Group4_T1--6	chr1:15863399	A	NA	16	0	16	35.875	3.845	0	0	0	15	0	DNAJC16	intronic	NA
MB_Group4_T1--GL	chr1:15863399	A	NA	43	0	43	34.581	6.562	0	0	0	37	0	DNAJC16	intronic	NA
MB_Group4_T1--1	chr1:159273878	T	C	68	0.147	58	38.776	2.968	10	38.700	3.057	57	10	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:159273878	T	NA	49	0	49	38.388	2.775	0	0	0	49	0	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:159273878	T	C	123	0.033	119	37.613	3.973	4	40.000	1.414	114	4	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:159273878	T	NA	49	0	49	38.469	2.873	0	0	0	48	0	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:159273878	T	NA	32	0	32	37.281	4.191	0	0	0	30	0	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:159273878	T	NA	36	0	36	38.417	2.999	0	0	0	36	0	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:159273878	T	NA	158	0	158	37.747	3.865	0	0	0	152	0	FCER1A	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:161138713	T	C	40	0.150	34	36.324	4.643	6	35.333	1.862	33	6	PPOX	intronic	NA
MB_Group4_T1--2	chr1:161138713	T	C	41	0.073	38	37.684	3.764	3	33.000	1.732	36	3	PPOX	intronic	NA
MB_Group4_T1--3	chr1:161138713	T	C	198	0.025	193	37.249	4.299	5	35.400	5.030	186	4	PPOX	intronic	NA
MB_Group4_T1--4	chr1:161138713	T	C	16	0.062	15	36.733	5.522	1	34.000	0.000	13	1	PPOX	intronic	NA
MB_Group4_T1--5	chr1:161138713	T	C	165	0.103	148	37.615	3.294	17	34.941	2.045	144	17	PPOX	intronic	NA
MB_Group4_T1--6	chr1:161138713	T	NA	21	0	21	36.333	4.923	0	0	0	19	0	PPOX	intronic	NA
MB_Group4_T1--GL	chr1:161138713	T	NA	57	0	57	37.825	3.771	0	0	0	55	0	PPOX	intronic	NA
MB_Group4_T1--1	chr11:62343056	C	NA	38	0	38	37.684	3.094	0	0	0	38	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:62343056	C	NA	32	0	32	37.000	3.312	0	0	0	32	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:62343056	C	NA	201	0	201	36.582	5.136	0	0	0	191	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:62343056	C	NA	21	0	21	35.048	4.533	0	0	0	20	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:62343056	C	NA	130	0	130	36.477	4.000	0	0	0	123	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:62343056	C	A	23	0.174	19	35.526	3.422	4	35.750	2.217	18	4	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:62343056	C	NA	78	0	77	36.117	4.286	0	0	0	72	0	TUT1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:651414	G	A	35	0.114	31	31.839	8.379	4	32.500	2.517	23	3	DEAF1	intronic	NA
MB_Group4_T1--2	chr11:651414	G	NA	17	0	17	33.059	8.474	0	0	0	13	0	DEAF1	intronic	NA
MB_Group4_T1--3	chr11:651414	G	NA	44	0	41	36.122	5.492	0	0	0	37	0	DEAF1	intronic	NA
MB_Group4_T1--4	chr11:651414	G	NA	10	0	9	35.222	6.978	0	0	0	8	0	DEAF1	intronic	NA
MB_Group4_T1--5	chr11:651414	G	A	42	0.071	38	33.921	9.499	3	33.333	2.887	31	3	DEAF1	intronic	NA
MB_Group4_T1--6	chr11:651414	G	A	16	0.250	12	34.917	7.192	4	31.750	5.252	10	3	DEAF1	intronic	NA
MB_Group4_T1--GL	chr11:651414	G	NA	37	0	37	33.486	8.949	0	0	0	29	0	DEAF1	intronic	NA
MB_Group4_T1--1	chr11:67133004	C	NA	20	0	20	35.450	4.136	0	0	0	18	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:67133004	C	NA	38	0	38	35.579	4.995	0	0	0	34	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:67133004	C	NA	139	0	139	34.935	6.258	0	0	0	128	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:67133004	C	NA	13	0	13	37.538	2.757	0	0	0	13	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:67133004	C	NA	79	0	79	34.595	5.420	0	0	0	73	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:67133004	C	A	12	0.250	9	36.778	4.324	3	31.333	7.638	8	2	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:67133004	C	NA	77	0	77	35.299	4.469	0	0	0	72	0	CLCF1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:6789862	G	A	56	0.125	49	37.429	3.403	7	33.571	2.149	48	7	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--2	chr11:6789862	G	A	44	0.159	37	37.189	2.602	7	31.286	7.204	37	6	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--3	chr11:6789862	G	A	180	0.039	173	36.416	4.761	7	33.286	1.604	165	7	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--4	chr11:6789862	G	A	56	0.089	51	36.314	3.844	5	32.600	3.782	49	4	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--5	chr11:6789862	G	NA	40	0	39	36.205	4.937	0	0	0	33	0	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--6	chr11:6789862	G	A	38	0.237	29	36.828	3.339	9	34.111	2.934	29	9	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr11:6789862	G	NA	119	0	119	36.891	3.831	0	0	0	112	0	OR2AG2	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:168262527	G	T	101	0.347	66	37.182	4.746	35	34.943	7.941	62	31	TBX19	intronic	NA
MB_Group4_T1--2	chr1:168262527	G	T	90	0.322	58	38.034	3.519	29	34.138	7.225	56	24	TBX19	intronic	NA
MB_Group4_T1--3	chr1:168262527	G	T	349	0.281	243	37.358	5.108	98	34.357	8.319	227	83	TBX19	intronic	NA
MB_Group4_T1--4	chr1:168262527	G	T	48	0.396	26	37.038	3.862	19	34.737	7.593	24	18	TBX19	intronic	NA
MB_Group4_T1--5	chr1:168262527	G	T	191	0.230	144	37.438	4.653	44	35.455	6.052	139	37	TBX19	intronic	NA
MB_Group4_T1--6	chr1:168262527	G	T	51	0.392	30	37.033	5.846	20	35.350	7.286	28	19	TBX19	intronic	NA
MB_Group4_T1--GL	chr1:168262527	G	NA	177	0	164	36.604	5.424	0	0	0	150	0	TBX19	intronic	NA
MB_Group4_T1--1	chr11:68548003	C	G	27	0.333	18	37.611	5.992	9	36.778	1.202	17	9	CPT1A	intronic	NA
MB_Group4_T1--2	chr11:68548003	C	G	28	0.321	19	38.789	5.874	9	34.778	6.667	18	8	CPT1A	intronic	NA
MB_Group4_T1--3	chr11:68548003	C	G	118	0.017	115	38.478	4.813	2	36.000	1.414	112	2	CPT1A	intronic	NA
MB_Group4_T1--4	chr11:68548003	C	G	15	0.133	13	37.231	3.270	2	34.500	3.536	13	2	CPT1A	intronic	NA
MB_Group4_T1--5	chr11:68548003	C	G	142	0.099	128	37.805	5.401	14	34.929	7.405	123	13	CPT1A	intronic	NA
MB_Group4_T1--6	chr11:68548003	C	G	12	0.250	9	38.889	3.655	3	34.667	2.517	9	3	CPT1A	intronic	NA
MB_Group4_T1--GL	chr11:68548003	C	NA	40	0	39	38.256	3.823	0	0	0	37	0	CPT1A	intronic	NA
MB_Group4_T1--1	chr11:68560965	A	G	28	0.143	24	34.542	6.318	4	36.500	1.000	21	4	CPT1A	intronic	NA
MB_Group4_T1--2	chr11:68560965	A	G	24	0.208	19	35.947	3.082	5	36.600	0.894	18	5	CPT1A	intronic	NA
MB_Group4_T1--3	chr11:68560965	A	NA	45	0	45	34.356	7.026	0	0	0	38	0	CPT1A	intronic	NA
MB_Group4_T1--4	chr11:68560965	A	G	17	0.118	15	36.800	2.366	2	34.000	4.243	15	2	CPT1A	intronic	NA
MB_Group4_T1--5	chr11:68560965	A	G	44	0.091	40	34.150	6.765	4	37.000	1.633	34	4	CPT1A	intronic	NA
MB_Group4_T1--6	chr11:68560965	A	G	14	0.071	13	36.846	2.115	1	37.000	0.000	13	1	CPT1A	intronic	NA
MB_Group4_T1--GL	chr11:68560965	A	NA	54	0	54	34.889	5.322	0	0	0	48	0	CPT1A	intronic	NA
MB_Group4_T1--1	chr1:169447213	T	C	19	0.105	17	36.412	7.098	2	37.500	0.707	16	2	SLC19A2	intronic	NA
MB_Group4_T1--2	chr1:169447213	T	C	24	0.250	18	37.556	3.989	6	37.000	0.000	17	6	SLC19A2	intronic	NA
MB_Group4_T1--3	chr1:169447213	T	C	66	0.045	63	35.794	5.955	3	38.333	2.309	58	3	SLC19A2	intronic	NA
MB_Group4_T1--4	chr1:169447213	T	C	16	0.062	15	35.867	4.340	1	35.000	0.000	13	1	SLC19A2	intronic	NA
MB_Group4_T1--5	chr1:169447213	T	C	62	0.048	58	36.052	7.760	3	37.667	1.155	52	3	SLC19A2	intronic	NA
MB_Group4_T1--6	chr1:169447213	T	C	20	0.050	19	37.211	3.980	1	37.000	0.000	18	1	SLC19A2	intronic	NA
MB_Group4_T1--GL	chr1:169447213	T	NA	37	0	37	36.081	4.621	0	0	0	35	0	SLC19A2	intronic	NA
MB_Group4_T1--1	chr11:70253588	C	NA	26	0	26	37.038	5.560	0	0	0	24	0	CTTN	intronic	NA
MB_Group4_T1--2	chr11:70253588	C	NA	20	0	20	37.700	2.993	0	0	0	20	0	CTTN	intronic	NA
MB_Group4_T1--3	chr11:70253588	C	NA	83	0	83	36.482	3.179	0	0	0	82	0	CTTN	intronic	NA
MB_Group4_T1--4	chr11:70253588	C	NA	10	0	10	38.300	3.433	0	0	0	10	0	CTTN	intronic	NA
MB_Group4_T1--5	chr11:70253588	C	NA	27	0	27	34.704	6.753	0	0	0	24	0	CTTN	intronic	NA
MB_Group4_T1--6	chr11:70253588	C	A	15	0.267	11	38.273	2.611	4	39.000	2.828	11	4	CTTN	intronic	NA
MB_Group4_T1--GL	chr11:70253588	C	NA	64	0	64	36.266	4.021	0	0	0	61	0	CTTN	intronic	NA
MB_Group4_T1--1	chr11:70821244	T	G	20	0.150	16	36.812	3.351	3	35.667	2.309	16	3	SHANK2	intronic	NA
MB_Group4_T1--2	chr11:70821244	T	G	12	0.250	9	37.333	4.359	3	36.000	1.732	8	3	SHANK2	intronic	NA
MB_Group4_T1--3	chr11:70821244	T	NA	66	0	66	36.606	5.778	0	0	0	58	0	SHANK2	intronic	NA
MB_Group4_T1--4	chr11:70821244	T	G	14	0.071	13	38.077	2.532	1	40.000	0.000	13	1	SHANK2	intronic	NA
MB_Group4_T1--5	chr11:70821244	T	G	60	0.067	55	37.582	3.315	4	36.250	2.217	54	4	SHANK2	intronic	NA
MB_Group4_T1--6	chr11:70821244	T	G	16	0.062	15	37.333	4.186	1	31.000	0.000	14	1	SHANK2	intronic	NA
MB_Group4_T1--GL	chr11:70821244	T	NA	39	0	39	37.821	3.590	0	0	0	37	0	SHANK2	intronic	NA
MB_Group4_T1--1	chr1:171251146	A	NA	11	0	11	37.909	3.239	0	0	0	11	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:171251146	A	NA	13	0	13	39.615	2.329	0	0	0	13	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:171251146	A	NA	44	0	44	36.477	5.346	0	0	0	40	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:171251146	A	NA	13	0	13	38.615	2.293	0	0	0	13	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:171251146	A	G	15	0.333	10	36.800	2.860	5	35.000	8.689	10	4	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:171251146	A	NA	10	0	10	39.900	2.283	0	0	0	10	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:171251146	A	NA	40	0	40	38.450	2.970	0	0	0	40	0	FMO1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:71279894	C	NA	37	0	22	33.091	7.217	0	0	0	19	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--2	chr11:71279894	C	T	31	0.258	23	36.261	2.700	8	35.750	2.816	22	8	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--3	chr11:71279894	C	NA	83	0	46	36.087	3.285	0	0	0	45	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--4	chr11:71279894	C	NA	19	0	13	35.154	4.652	0	0	0	12	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--5	chr11:71279894	C	NA	43	0	21	34.810	4.718	0	0	0	20	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--6	chr11:71279894	C	NA	16	0	8	33.250	5.258	0	0	0	6	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--GL	chr11:71279894	C	NA	65	0	39	36.051	3.441	0	0	0	39	0	KRTAP5-10(dist=2228),KRTAP5-11(dist=13007)	intergenic	NA
MB_Group4_T1--1	chr11:72466607	A	T	26	0.231	20	37.300	3.481	6	37.000	0.000	20	6	STARD10	intronic	NA
MB_Group4_T1--2	chr11:72466607	A	T	24	0.083	22	38.455	2.324	2	33.000	5.657	22	1	STARD10	intronic	NA
MB_Group4_T1--3	chr11:72466607	A	T	91	0.088	82	38.073	2.956	8	36.500	0.926	81	8	STARD10	intronic	NA
MB_Group4_T1--4	chr11:72466607	A	T	15	0.067	14	34.786	8.842	1	37.000	0.000	12	1	STARD10	intronic	NA
MB_Group4_T1--5	chr11:72466607	A	T	115	0.157	96	37.802	4.562	18	36.167	1.200	92	18	STARD10	intronic	NA
MB_Group4_T1--6	chr11:72466607	A	T	10	0.200	8	38.125	4.324	2	37.000	0.000	7	2	STARD10	intronic	NA
MB_Group4_T1--GL	chr11:72466607	A	NA	40	0	40	38.400	3.499	0	0	0	37	0	STARD10	intronic	NA
MB_Group4_T1--1	chr1:173814201	G	A	24	0.042	23	37.565	4.143	1	37.000	0.000	21	1	DARS2	intronic	NA
MB_Group4_T1--2	chr1:173814201	G	A	35	0.171	29	36.034	3.145	6	36.667	0.816	28	6	DARS2	intronic	NA
MB_Group4_T1--3	chr1:173814201	G	A	72	0.056	68	36.721	5.019	4	35.750	1.500	63	4	DARS2	intronic	NA
MB_Group4_T1--4	chr1:173814201	G	NA	13	0	13	36.154	3.078	0	0	0	13	0	DARS2	intronic	NA
MB_Group4_T1--5	chr1:173814201	G	NA	88	0	88	36.284	4.318	0	0	0	86	0	DARS2	intronic	NA
MB_Group4_T1--6	chr1:173814201	G	A	12	0.167	10	36.800	2.700	2	37.000	0.000	10	2	DARS2	intronic	NA
MB_Group4_T1--GL	chr1:173814201	G	NA	42	0	42	38.143	3.942	0	0	0	41	0	DARS2	intronic	NA
MB_Group4_T1--1	chr1:180155257	C	NA	20	0	20	33.700	5.459	0	0	0	17	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:180155257	C	NA	27	0	27	35.037	3.019	0	0	0	25	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:180155257	C	NA	133	0	132	33.932	5.953	0	0	0	115	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:180155257	C	NA	16	0	16	34.500	3.246	0	0	0	15	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:180155257	C	NA	68	0	68	34.162	4.234	0	0	0	61	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:180155257	C	T	15	0.200	12	35.167	2.791	3	35.667	1.155	12	3	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:180155257	C	NA	52	0	52	34.269	4.766	0	0	0	45	0	QSOX1	exonic	synonymous_SNV
MB_Group4_T1--1	chr11:82968301	T	A	21	0.143	18	32.667	4.159	3	35.000	1.732	16	3	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--2	chr11:82968301	T	A	25	0.200	20	29.650	6.011	5	35.200	2.049	13	5	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--3	chr11:82968301	T	A	59	0.034	57	31.316	5.859	2	23.500	19.092	48	1	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--4	chr11:82968301	T	NA	13	0	12	30.917	5.664	0	0	0	8	0	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--5	chr11:82968301	T	A	75	0.173	62	32.516	6.647	13	37.077	1.656	52	13	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--6	chr11:82968301	T	NA	15	0	15	30.733	4.862	0	0	0	11	0	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--GL	chr11:82968301	T	NA	36	0	35	31.971	4.436	0	0	0	28	0	ANKRD42(dist=8288),CCDC90B(dist=1834)	intergenic	NA
MB_Group4_T1--1	chr11:82968311	G	T	26	0.154	22	38.636	2.105	4	35.000	4.899	22	4	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--2	chr11:82968311	G	T	23	0.087	21	37.381	3.981	2	33.500	4.950	21	2	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--3	chr11:82968311	G	T	68	0.088	62	38.839	3.090	6	36.167	2.041	61	6	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--4	chr11:82968311	G	NA	13	0	13	39.231	2.204	0	0	0	13	0	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--5	chr11:82968311	G	T	75	0.200	60	38.433	3.985	15	33.667	8.423	59	13	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--6	chr11:82968311	G	T	17	0.059	16	36.625	4.530	1	37.000	0.000	15	1	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--GL	chr11:82968311	G	NA	38	0	38	36.500	5.213	0	0	0	35	0	ANKRD42(dist=8298),CCDC90B(dist=1824)	intergenic	NA
MB_Group4_T1--1	chr11:82968316	C	G	26	0.154	22	39.091	2.793	4	36.750	4.193	22	4	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--2	chr11:82968316	C	G	25	0.080	23	37.522	3.013	2	35.500	3.536	23	2	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--3	chr11:82968316	C	G	76	0.092	69	38.812	2.892	7	34.286	10.812	69	6	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--4	chr11:82968316	C	NA	13	0	13	39.846	1.819	0	0	0	13	0	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--5	chr11:82968316	C	G	84	0.190	68	38.015	4.198	16	36.750	2.352	63	16	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--6	chr11:82968316	C	NA	17	0	17	37.529	3.484	0	0	0	17	0	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--GL	chr11:82968316	C	NA	40	0	40	36.725	5.991	0	0	0	38	0	ANKRD42(dist=8303),CCDC90B(dist=1819)	intergenic	NA
MB_Group4_T1--1	chr1:185934892	C	NA	56	0	56	35.804	3.338	0	0	0	51	0	HMCN1	intronic	NA
MB_Group4_T1--2	chr1:185934892	C	NA	32	0	32	35.344	4.527	0	0	0	30	0	HMCN1	intronic	NA
MB_Group4_T1--3	chr1:185934892	C	NA	45	0	45	35.222	3.753	0	0	0	42	0	HMCN1	intronic	NA
MB_Group4_T1--4	chr1:185934892	C	NA	19	0	19	37.105	2.378	0	0	0	19	0	HMCN1	intronic	NA
MB_Group4_T1--5	chr1:185934892	C	A	12	0.250	9	33.333	2.500	3	36.000	2.646	8	3	HMCN1	intronic	NA
MB_Group4_T1--6	chr1:185934892	C	NA	10	0	10	36.000	2.867	0	0	0	10	0	HMCN1	intronic	NA
MB_Group4_T1--GL	chr1:185934892	C	NA	78	0	78	35.128	3.862	0	0	0	74	0	HMCN1	intronic	NA
MB_Group4_T1--1	chr1:189958874	T	NA	33	0	33	37.121	3.814	0	0	0	31	0	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--2	chr1:189958874	T	C	37	0.027	36	37.472	3.629	1	39.000	0.000	34	1	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--3	chr1:189958874	T	C	80	0.013	78	36.949	4.492	1	38.000	0.000	75	1	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--4	chr1:189958874	T	NA	18	0	18	37.444	3.434	0	0	0	18	0	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--5	chr1:189958874	T	NA	18	0	18	36.944	4.465	0	0	0	17	0	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--6	chr1:189958874	T	C	16	0.188	13	37.385	4.664	3	37.333	2.082	11	3	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--GL	chr1:189958874	T	NA	64	0	64	37.594	3.079	0	0	0	64	0	NONE(dist=NONE),BRINP3(dist=107923)	intergenic	NA
MB_Group4_T1--1	chr1:1904243	G	T	28	0.250	21	35.000	5.404	7	37.000	3.651	19	6	KIAA1751	intronic	NA
MB_Group4_T1--2	chr1:1904243	G	T	30	0.267	22	34.545	6.581	8	37.250	0.707	20	8	KIAA1751	intronic	NA
MB_Group4_T1--3	chr1:1904243	G	T	100	0.020	98	35.061	4.423	2	37.000	0.000	90	2	KIAA1751	intronic	NA
MB_Group4_T1--4	chr1:1904243	G	T	16	0.188	13	35.308	5.468	3	37.000	0.000	12	3	KIAA1751	intronic	NA
MB_Group4_T1--5	chr1:1904243	G	NA	118	0	118	34.873	5.034	0	0	0	107	0	KIAA1751	intronic	NA
MB_Group4_T1--6	chr1:1904243	G	T	10	0.100	9	35.889	2.977	1	35.000	0.000	9	1	KIAA1751	intronic	NA
MB_Group4_T1--GL	chr1:1904243	G	NA	49	0	49	34.490	5.173	0	0	0	45	0	KIAA1751	intronic	NA
MB_Group4_T1--1	chr1:192997002	T	C	23	0.130	20	38.000	2.734	3	36.667	2.517	20	3	UCHL5	intronic	NA
MB_Group4_T1--2	chr1:192997002	T	NA	15	0	15	35.067	9.910	0	0	0	13	0	UCHL5	intronic	NA
MB_Group4_T1--3	chr1:192997002	T	NA	35	0	35	37.429	3.310	0	0	0	33	0	UCHL5	intronic	NA
MB_Group4_T1--4	chr1:192997002	T	NA	10	0	10	35.100	7.078	0	0	0	9	0	UCHL5	intronic	NA
MB_Group4_T1--5	chr1:192997002	T	C	22	0.227	17	35.176	5.950	5	36.800	1.095	14	5	UCHL5	intronic	NA
MB_Group4_T1--6	chr1:192997002	T	C	12	0.083	11	38.091	5.108	1	37.000	0.000	10	1	UCHL5	intronic	NA
MB_Group4_T1--GL	chr1:192997002	T	NA	55	0	55	37.491	3.681	0	0	0	53	0	UCHL5	intronic	NA
MB_Group4_T1--1	chr1:192997004	C	G	22	0.091	20	35.050	9.327	2	38.000	1.414	17	2	UCHL5	intronic	NA
MB_Group4_T1--2	chr1:192997004	C	G	16	0.062	15	36.467	6.865	1	34.000	0.000	13	1	UCHL5	intronic	NA
MB_Group4_T1--3	chr1:192997004	C	NA	35	0	35	37.943	3.556	0	0	0	33	0	UCHL5	intronic	NA
MB_Group4_T1--4	chr1:192997004	C	NA	10	0	10	37.700	2.541	0	0	0	10	0	UCHL5	intronic	NA
MB_Group4_T1--5	chr1:192997004	C	G	21	0.190	16	36.125	6.313	4	37.500	1.000	14	4	UCHL5	intronic	NA
MB_Group4_T1--6	chr1:192997004	C	G	12	0.083	11	38.909	3.618	1	35.000	0.000	10	1	UCHL5	intronic	NA
MB_Group4_T1--GL	chr1:192997004	C	NA	55	0	55	38.600	3.160	0	0	0	54	0	UCHL5	intronic	NA
MB_Group4_T1--1	chr11:9450702	C	A	21	0.048	20	39.400	2.521	1	41.000	0.000	20	1	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr11:9450702	C	A	21	0.143	18	37.222	3.507	3	40.667	0.577	18	3	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr11:9450702	C	NA	38	0	38	37.579	3.614	0	0	0	36	0	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr11:9450702	C	NA	24	0	24	37.000	4.118	0	0	0	22	0	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr11:9450702	C	NA	11	0	11	34.727	6.389	0	0	0	9	0	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr11:9450702	C	NA	18	0	18	36.778	4.821	0	0	0	16	0	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr11:9450702	C	NA	48	0	48	37.062	5.405	0	0	0	47	0	IPO7	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr11:95551313	C	T	27	0.259	20	35.550	6.236	7	36.000	1.915	17	7	CEP57	intronic	NA
MB_Group4_T1--2	chr11:95551313	C	T	29	0.103	26	37.769	2.903	3	37.000	0.000	25	3	CEP57	intronic	NA
MB_Group4_T1--3	chr11:95551313	C	T	59	0.051	56	36.982	4.184	3	37.000	0.000	52	3	CEP57	intronic	NA
MB_Group4_T1--4	chr11:95551313	C	T	27	0.111	24	34.750	5.431	3	37.000	0.000	20	3	CEP57	intronic	NA
MB_Group4_T1--5	chr11:95551313	C	NA	34	0	33	36.545	4.078	0	0	0	31	0	CEP57	intronic	NA
MB_Group4_T1--6	chr11:95551313	C	T	14	0.071	13	35.692	4.191	1	35.000	0.000	12	1	CEP57	intronic	NA
MB_Group4_T1--GL	chr11:95551313	C	NA	57	0	57	36.702	5.571	0	0	0	51	0	CEP57	intronic	NA
MB_Group4_T1--1	chr11:95551323	C	T	19	0.263	14	37.000	5.974	5	34.600	1.817	12	5	CEP57	intronic	NA
MB_Group4_T1--2	chr11:95551323	C	T	20	0.050	19	38.684	3.757	1	37.000	0.000	18	1	CEP57	intronic	NA
MB_Group4_T1--3	chr11:95551323	C	T	51	0.039	49	36.490	5.079	2	36.500	3.536	45	2	CEP57	intronic	NA
MB_Group4_T1--4	chr11:95551323	C	T	23	0.087	21	36.286	5.506	2	37.000	0.000	20	2	CEP57	intronic	NA
MB_Group4_T1--5	chr11:95551323	C	NA	35	0	34	36.735	5.236	0	0	0	31	0	CEP57	intronic	NA
MB_Group4_T1--6	chr11:95551323	C	T	12	0.083	11	35.364	3.749	1	35.000	0.000	11	1	CEP57	intronic	NA
MB_Group4_T1--GL	chr11:95551323	C	NA	56	0	56	36.304	4.636	0	0	0	55	0	CEP57	intronic	NA
MB_Group4_T1--1	chr1:196709687	A	T	35	0.171	29	38.759	2.262	6	34.667	3.983	29	5	CFH	intronic	NA
MB_Group4_T1--2	chr1:196709687	A	NA	35	0	35	37.771	3.711	0	0	0	33	0	CFH	intronic	NA
MB_Group4_T1--3	chr1:196709687	A	T	89	0.034	86	38.523	4.330	3	37.333	3.512	84	3	CFH	intronic	NA
MB_Group4_T1--4	chr1:196709687	A	NA	24	0	24	38.958	2.116	0	0	0	24	0	CFH	intronic	NA
MB_Group4_T1--5	chr1:196709687	A	NA	30	0	30	38.100	3.155	0	0	0	29	0	CFH	intronic	NA
MB_Group4_T1--6	chr1:196709687	A	NA	21	0	21	38.333	3.055	0	0	0	21	0	CFH	intronic	NA
MB_Group4_T1--GL	chr1:196709687	A	NA	74	0	74	38.649	3.054	0	0	0	73	0	CFH	intronic	NA
MB_Group4_T1--1	chr1:203832706	G	C	26	0.346	17	39.059	2.384	9	35.889	4.137	17	8	SNRPE	intronic	NA
MB_Group4_T1--2	chr1:203832706	G	C	26	0.385	16	37.500	4.676	10	35.800	2.098	15	10	SNRPE	intronic	NA
MB_Group4_T1--3	chr1:203832706	G	C	47	0.213	37	38.946	2.172	10	35.800	1.033	37	10	SNRPE	intronic	NA
MB_Group4_T1--4	chr1:203832706	G	C	10	0.100	9	40.444	1.130	1	32.000	0.000	9	1	SNRPE	intronic	NA
MB_Group4_T1--5	chr1:203832706	G	C	70	0.429	39	36.821	6.444	30	36.700	1.055	36	30	SNRPE	intronic	NA
MB_Group4_T1--6	chr1:203832706	G	C	13	0.231	10	38.000	4.899	3	37.667	3.055	9	3	SNRPE	intronic	NA
MB_Group4_T1--GL	chr1:203832706	G	NA	34	0	34	39.265	2.391	0	0	0	34	0	SNRPE	intronic	NA
MB_Group4_T1--1	chr1:205594875	G	C	24	0.083	22	37.773	3.422	2	36.000	1.414	22	2	ELK4	intronic	NA
MB_Group4_T1--2	chr1:205594875	G	C	18	0.056	17	36.059	3.269	1	37.000	0.000	17	1	ELK4	intronic	NA
MB_Group4_T1--3	chr1:205594875	G	C	55	0.073	50	36.540	4.546	4	37.250	2.062	47	4	ELK4	intronic	NA
MB_Group4_T1--4	chr1:205594875	G	NA	13	0	13	36.154	3.648	0	0	0	12	0	ELK4	intronic	NA
MB_Group4_T1--5	chr1:205594875	G	C	52	0.192	42	36.310	5.920	10	36.600	0.843	40	10	ELK4	intronic	NA
MB_Group4_T1--6	chr1:205594875	G	NA	12	0	12	37.833	3.713	0	0	0	12	0	ELK4	intronic	NA
MB_Group4_T1--GL	chr1:205594875	G	NA	34	0	34	36.147	3.086	0	0	0	33	0	ELK4	intronic	NA
MB_Group4_T1--1	chr1:205817223	G	A	60	0.133	52	36.904	5.373	8	36.250	2.121	50	8	PM20D1	intronic	NA
MB_Group4_T1--2	chr1:205817223	G	A	67	0.194	54	37.685	3.736	13	36.538	1.198	52	13	PM20D1	intronic	NA
MB_Group4_T1--3	chr1:205817223	G	A	170	0.053	161	37.242	3.887	9	36.444	1.667	154	9	PM20D1	intronic	NA
MB_Group4_T1--4	chr1:205817223	G	A	22	0.182	18	36.056	3.948	4	35.500	3.000	18	4	PM20D1	intronic	NA
MB_Group4_T1--5	chr1:205817223	G	A	124	0.121	109	37.239	3.800	15	37.133	2.031	106	15	PM20D1	intronic	NA
MB_Group4_T1--6	chr1:205817223	G	A	28	0.107	25	36.600	4.368	3	35.000	3.464	23	3	PM20D1	intronic	NA
MB_Group4_T1--GL	chr1:205817223	G	NA	51	0	51	36.961	3.322	0	0	0	51	0	PM20D1	intronic	NA
MB_Group4_T1--1	chr1:207268800	C	NA	14	0	14	38.214	2.392	0	0	0	14	0	C4BPB	intronic	NA
MB_Group4_T1--2	chr1:207268800	C	NA	16	0	16	36.875	4.209	0	0	0	15	0	C4BPB	intronic	NA
MB_Group4_T1--3	chr1:207268800	C	T	42	0.071	38	37.079	5.979	3	37.000	0.000	36	3	C4BPB	intronic	NA
MB_Group4_T1--4	chr1:207268800	C	T	13	0.077	12	37.833	3.243	1	37.000	0.000	12	1	C4BPB	intronic	NA
MB_Group4_T1--5	chr1:207268800	C	T	52	0.058	49	36.653	3.314	3	36.333	1.155	47	3	C4BPB	intronic	NA
MB_Group4_T1--6	chr1:207268800	C	T	12	0.333	8	38.250	3.327	4	35.500	1.915	8	4	C4BPB	intronic	NA
MB_Group4_T1--GL	chr1:207268800	C	NA	45	0	45	37.333	3.896	0	0	0	43	0	C4BPB	intronic	NA
MB_Group4_T1--1	chr1:207268801	A	NA	14	0	14	37.571	3.524	0	0	0	13	0	C4BPB	intronic	NA
MB_Group4_T1--2	chr1:207268801	A	NA	17	0	17	36.294	4.441	0	0	0	16	0	C4BPB	intronic	NA
MB_Group4_T1--3	chr1:207268801	A	G	44	0.091	40	37.000	5.064	4	36.500	1.000	38	4	C4BPB	intronic	NA
MB_Group4_T1--4	chr1:207268801	A	G	13	0.077	12	38.333	2.605	1	37.000	0.000	12	1	C4BPB	intronic	NA
MB_Group4_T1--5	chr1:207268801	A	G	55	0.055	52	36.346	3.860	3	36.333	1.155	48	3	C4BPB	intronic	NA
MB_Group4_T1--6	chr1:207268801	A	G	12	0.333	8	38.250	4.166	4	35.500	1.915	8	4	C4BPB	intronic	NA
MB_Group4_T1--GL	chr1:207268801	A	NA	43	0	43	37.930	2.955	0	0	0	43	0	C4BPB	intronic	NA
MB_Group4_T1--1	chr1:207669694	C	NA	63	0	63	34.794	3.561	0	0	0	58	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:207669694	C	NA	33	0	33	34.242	4.198	0	0	0	29	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:207669694	C	NA	116	0	116	33.517	6.014	0	0	0	102	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:207669694	C	NA	21	0	21	32.810	5.528	0	0	0	18	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:207669694	C	NA	90	0	90	34.633	5.602	0	0	0	81	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:207669694	C	A	15	0.200	12	34.750	3.980	3	34.667	0.577	11	3	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:207669694	C	NA	39	0	39	34.231	5.289	0	0	0	33	0	CR1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:209602614	C	T	22	0.227	17	38.176	4.231	5	37.800	2.168	17	5	MIR205HG	UTR5	NA
MB_Group4_T1--2	chr1:209602614	C	T	29	0.103	26	36.846	4.969	3	38.333	1.155	24	3	MIR205HG	UTR5	NA
MB_Group4_T1--3	chr1:209602614	C	NA	99	0	99	36.909	4.459	0	0	0	95	0	MIR205HG	UTR5	NA
MB_Group4_T1--4	chr1:209602614	C	T	25	0.040	24	38.208	4.511	1	39.000	0.000	23	1	MIR205HG	UTR5	NA
MB_Group4_T1--5	chr1:209602614	C	T	48	0.042	46	36.652	3.485	2	37.000	0.000	45	2	MIR205HG	UTR5	NA
MB_Group4_T1--6	chr1:209602614	C	NA	12	0	12	37.000	4.573	0	0	0	11	0	MIR205HG	UTR5	NA
MB_Group4_T1--GL	chr1:209602614	C	NA	50	0	50	36.740	5.213	0	0	0	47	0	MIR205HG	UTR5	NA
MB_Group4_T1--1	chr12:102128577	T	C	10	0.100	9	39.333	1.936	1	41.000	0.000	9	1	SYCP3	intronic	NA
MB_Group4_T1--2	chr12:102128577	T	NA	19	0	19	39.000	2.236	0	0	0	19	0	SYCP3	intronic	NA
MB_Group4_T1--3	chr12:102128577	T	C	36	0.028	35	39.000	3.413	1	37.000	0.000	34	1	SYCP3	intronic	NA
MB_Group4_T1--4	chr12:102128577	T	NA	13	0	13	40.000	1.472	0	0	0	13	0	SYCP3	intronic	NA
MB_Group4_T1--5	chr12:102128577	T	C	24	0.208	19	38.263	3.413	5	37.000	0.000	19	5	SYCP3	intronic	NA
MB_Group4_T1--6	chr12:102128577	T	NA	16	0	16	37.500	2.530	0	0	0	16	0	SYCP3	intronic	NA
MB_Group4_T1--GL	chr12:102128577	T	NA	38	0	38	37.684	6.605	0	0	0	34	0	SYCP3	intronic	NA
MB_Group4_T1--1	chr12:102183481	T	NA	14	0	11	38.273	2.240	0	0	0	11	0	GNPTAB	intronic	NA
MB_Group4_T1--2	chr12:102183481	T	C	13	0.077	12	37.750	2.768	1	35.000	0.000	12	1	GNPTAB	intronic	NA
MB_Group4_T1--3	chr12:102183481	T	C	51	0.020	43	36.488	4.085	1	37.000	0.000	40	1	GNPTAB	intronic	NA
MB_Group4_T1--4	chr12:102183481	T	C	10	0.200	8	36.000	3.464	2	36.000	1.414	7	2	GNPTAB	intronic	NA
MB_Group4_T1--5	chr12:102183481	T	C	39	0.462	21	37.429	3.815	18	34.889	5.582	20	16	GNPTAB	intronic	NA
MB_Group4_T1--6	chr12:102183481	T	C	11	0.091	10	35.300	3.057	1	37.000	0.000	10	1	GNPTAB	intronic	NA
MB_Group4_T1--GL	chr12:102183481	T	NA	44	0	44	38.318	2.726	0	0	0	44	0	GNPTAB	intronic	NA
MB_Group4_T1--1	chr12:102183482	G	NA	14	0	11	37.727	2.573	0	0	0	11	0	GNPTAB	intronic	NA
MB_Group4_T1--2	chr12:102183482	G	A	14	0.071	13	37.385	2.815	1	35.000	0.000	13	1	GNPTAB	intronic	NA
MB_Group4_T1--3	chr12:102183482	G	A	51	0.020	43	36.070	5.166	1	37.000	0.000	40	1	GNPTAB	intronic	NA
MB_Group4_T1--4	chr12:102183482	G	A	10	0.200	8	36.375	2.669	2	36.000	1.414	8	2	GNPTAB	intronic	NA
MB_Group4_T1--5	chr12:102183482	G	A	40	0.400	24	37.292	2.596	16	36.250	2.017	24	16	GNPTAB	intronic	NA
MB_Group4_T1--6	chr12:102183482	G	A	11	0.091	10	34.600	2.675	1	37.000	0.000	10	1	GNPTAB	intronic	NA
MB_Group4_T1--GL	chr12:102183482	G	NA	44	0	44	37.818	3.350	0	0	0	43	0	GNPTAB	intronic	NA
MB_Group4_T1--1	chr12:102283925	T	NA	19	0	19	38.105	2.558	0	0	0	19	0	DRAM1	intronic	NA
MB_Group4_T1--2	chr12:102283925	T	NA	16	0	16	37.562	3.596	0	0	0	16	0	DRAM1	intronic	NA
MB_Group4_T1--3	chr12:102283925	T	C	48	0.042	46	36.543	3.931	2	37.000	0.000	44	2	DRAM1	intronic	NA
MB_Group4_T1--4	chr12:102283925	T	NA	13	0	13	37.692	3.683	0	0	0	13	0	DRAM1	intronic	NA
MB_Group4_T1--5	chr12:102283925	T	C	58	0.138	50	37.380	4.421	8	35.625	1.768	47	8	DRAM1	intronic	NA
MB_Group4_T1--6	chr12:102283925	T	NA	16	0	16	37.750	2.933	0	0	0	15	0	DRAM1	intronic	NA
MB_Group4_T1--GL	chr12:102283925	T	NA	45	0	45	37.400	3.595	0	0	0	44	0	DRAM1	intronic	NA
MB_Group4_T1--1	chr1:210439563	A	NA	64	0	49	37.714	3.458	0	0	0	47	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--1	chr1:210439563	A	NA	64	0	49	37.714	3.458	0	0	0	47	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--2	chr1:210439563	A	C	27	0.111	22	37.000	2.862	3	37.000	0.000	22	3	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--2	chr1:210439563	A	C	27	0.111	22	37.000	2.862	3	37.000	0.000	22	3	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--3	chr1:210439563	A	C	140	0.057	132	37.462	3.699	8	35.625	3.159	128	7	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--3	chr1:210439563	A	C	140	0.057	132	37.462	3.699	8	35.625	3.159	128	7	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--4	chr1:210439563	A	C	19	0.211	15	35.933	3.390	4	36.500	1.000	14	4	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--4	chr1:210439563	A	C	19	0.211	15	35.933	3.390	4	36.500	1.000	14	4	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--5	chr1:210439563	A	NA	128	0	105	37.905	3.735	0	0	0	102	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--5	chr1:210439563	A	NA	128	0	105	37.905	3.735	0	0	0	102	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--6	chr1:210439563	A	C	15	0.133	12	35.000	3.668	2	37.000	0.000	11	2	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--6	chr1:210439563	A	C	15	0.133	12	35.000	3.668	2	37.000	0.000	11	2	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--GL	chr1:210439563	A	NA	47	0	46	38.239	5.043	0	0	0	45	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--GL	chr1:210439563	A	NA	47	0	46	38.239	5.043	0	0	0	45	0	SERTAD4(dist=23123),HHAT(dist=62033)	intergenic	NA
MB_Group4_T1--1	chr1:210439575	A	G	44	0.045	42	36.738	4.478	2	37.000	0.000	38	2	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--2	chr1:210439575	A	G	21	0.048	20	36.150	7.191	1	35.000	0.000	19	1	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--3	chr1:210439575	A	G	109	0.055	103	36.718	4.460	6	35.833	3.817	97	6	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--4	chr1:210439575	A	NA	12	0	12	34.500	7.141	0	0	0	10	0	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--5	chr1:210439575	A	G	104	0.202	81	37.272	4.685	21	34.905	3.404	74	19	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--6	chr1:210439575	A	G	12	0.083	11	33.455	6.170	1	37.000	0.000	9	1	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--GL	chr1:210439575	A	NA	37	0	37	37.730	3.024	0	0	0	37	0	SERTAD4(dist=23135),HHAT(dist=62021)	intergenic	NA
MB_Group4_T1--1	chr12:107080945	A	C	21	0.238	16	28.000	10.334	5	36.400	3.209	10	5	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--2	chr12:107080945	A	NA	15	0	14	29.571	13.043	0	0	0	9	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--3	chr12:107080945	A	NA	68	0	62	29.597	9.775	0	0	0	41	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--4	chr12:107080945	A	NA	15	0	15	33.400	4.672	0	0	0	13	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--5	chr12:107080945	A	C	27	0.222	21	33.810	8.406	6	31.167	8.750	18	4	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--6	chr12:107080945	A	C	14	0.143	11	31.364	9.047	2	22.000	8.485	8	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--GL	chr12:107080945	A	NA	70	0	66	31.485	8.976	0	0	0	49	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--1	chr12:107080964	A	T	16	0.312	10	31.200	7.099	5	37.800	2.588	7	5	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--2	chr12:107080964	A	T	17	0.294	8	33.250	2.493	5	37.000	3.162	8	5	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--3	chr12:107080964	A	T	59	0.034	55	32.836	7.765	2	32.000	7.071	44	1	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--4	chr12:107080964	A	T	10	0.200	7	33.429	4.429	2	34.000	1.414	6	2	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--5	chr12:107080964	A	T	26	0.154	18	34.278	7.940	4	35.250	2.630	16	4	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--6	chr12:107080964	A	T	12	0.333	6	35.667	3.670	4	25.750	11.206	6	3	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--GL	chr12:107080964	A	NA	59	0	57	34.491	5.043	0	0	0	52	0	LOC100287944	ncRNA_intronic	NA
MB_Group4_T1--1	chr12:107361093	A	G	10	0.100	9	35.667	3.841	1	39.000	0.000	8	1	C12orf23	intronic	NA
MB_Group4_T1--2	chr12:107361093	A	NA	17	0	17	37.647	3.408	0	0	0	16	0	C12orf23	intronic	NA
MB_Group4_T1--3	chr12:107361093	A	G	44	0.227	34	36.735	3.449	10	34.800	6.426	33	7	C12orf23	intronic	NA
MB_Group4_T1--4	chr12:107361093	A	NA	10	0	10	36.700	2.312	0	0	0	10	0	C12orf23	intronic	NA
MB_Group4_T1--5	chr12:107361093	A	G	31	0.258	23	38.043	2.900	8	36.625	3.462	23	8	C12orf23	intronic	NA
MB_Group4_T1--6	chr12:107361093	A	NA	10	0	10	37.600	2.547	0	0	0	10	0	C12orf23	intronic	NA
MB_Group4_T1--GL	chr12:107361093	A	NA	41	0	41	38.341	3.483	0	0	0	40	0	C12orf23	intronic	NA
MB_Group4_T1--1	chr12:10772844	C	T	69	0.029	67	37.433	3.262	2	37.000	0.000	65	2	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr12:10772844	C	NA	63	0	63	36.222	3.489	0	0	0	61	0	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr12:10772844	C	T	184	0.022	180	36.500	4.784	4	38.000	2.000	173	4	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr12:10772844	C	T	39	0.026	38	38.474	2.709	1	37.000	0.000	38	1	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr12:10772844	C	T	65	0.200	52	36.904	4.543	13	34.692	7.532	50	12	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr12:10772844	C	T	31	0.065	29	37.724	2.827	2	37.000	0.000	29	2	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr12:10772844	C	NA	219	0	219	36.954	3.341	0	0	0	215	0	STYK1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:109847775	C	A	14	0.214	11	36.455	9.213	3	35.667	1.528	10	3	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr12:109847775	C	NA	18	0	18	37.944	2.711	0	0	0	18	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr12:109847775	C	NA	40	0	40	36.075	5.540	0	0	0	39	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr12:109847775	C	NA	19	0	19	38.263	2.232	0	0	0	19	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr12:109847775	C	NA	27	0	27	37.519	2.901	0	0	0	27	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr12:109847775	C	NA	11	0	11	38.364	2.157	0	0	0	11	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr12:109847775	C	NA	47	0	47	36.191	6.124	0	0	0	43	0	MYO1H	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:109994453	T	A	46	0.196	37	35.216	6.481	9	32.556	6.247	35	8	MMAB	UTR3	NA
MB_Group4_T1--2	chr12:109994453	T	NA	56	0	56	35.857	6.083	0	0	0	51	0	MMAB	UTR3	NA
MB_Group4_T1--3	chr12:109994453	T	A	293	0.007	291	35.914	6.797	2	24.500	10.607	263	1	MMAB	UTR3	NA
MB_Group4_T1--4	chr12:109994453	T	NA	42	0	40	35.075	7.634	0	0	0	36	0	MMAB	UTR3	NA
MB_Group4_T1--5	chr12:109994453	T	NA	133	0	133	35.286	7.064	0	0	0	117	0	MMAB	UTR3	NA
MB_Group4_T1--6	chr12:109994453	T	NA	33	0	33	35.242	4.590	0	0	0	31	0	MMAB	UTR3	NA
MB_Group4_T1--GL	chr12:109994453	T	NA	118	0	116	37.207	3.191	0	0	0	113	0	MMAB	UTR3	NA
MB_Group4_T1--1	chr12:110009324	C	T	24	0.042	23	36.565	4.419	1	37.000	0.000	22	1	MMAB	intronic	NA
MB_Group4_T1--2	chr12:110009324	C	T	24	0.208	19	37.211	2.529	5	36.400	1.342	19	5	MMAB	intronic	NA
MB_Group4_T1--3	chr12:110009324	C	NA	110	0	110	37.400	4.021	0	0	0	103	0	MMAB	intronic	NA
MB_Group4_T1--4	chr12:110009324	C	T	15	0.067	14	37.643	3.388	1	35.000	0.000	14	1	MMAB	intronic	NA
MB_Group4_T1--5	chr12:110009324	C	T	93	0.011	92	37.087	4.334	1	37.000	0.000	86	1	MMAB	intronic	NA
MB_Group4_T1--6	chr12:110009324	C	NA	11	0	11	36.091	10.044	0	0	0	9	0	MMAB	intronic	NA
MB_Group4_T1--GL	chr12:110009324	C	NA	57	0	57	38.246	3.733	0	0	0	54	0	MMAB	intronic	NA
MB_Group4_T1--1	chr12:110834378	C	T	24	0.417	14	33.857	3.759	10	36.600	0.843	13	10	ANAPC7	intronic	NA
MB_Group4_T1--2	chr12:110834378	C	T	29	0.345	19	34.789	7.161	10	34.500	5.563	17	9	ANAPC7	intronic	NA
MB_Group4_T1--3	chr12:110834378	C	T	61	0.180	50	35.380	5.154	11	35.545	5.663	44	10	ANAPC7	intronic	NA
MB_Group4_T1--4	chr12:110834378	C	T	16	0.312	11	34.000	5.273	5	37.600	1.342	10	5	ANAPC7	intronic	NA
MB_Group4_T1--5	chr12:110834378	C	T	81	0.235	62	36.355	4.335	19	34.947	4.441	58	18	ANAPC7	intronic	NA
MB_Group4_T1--6	chr12:110834378	C	T	19	0.263	14	36.357	4.877	5	36.600	0.894	13	5	ANAPC7	intronic	NA
MB_Group4_T1--GL	chr12:110834378	C	NA	40	0	40	35.750	4.259	0	0	0	38	0	ANAPC7	intronic	NA
MB_Group4_T1--1	chr12:116434117	A	G	23	0.087	21	35.905	5.019	2	37.000	0.000	19	2	MED13L	intronic	NA
MB_Group4_T1--2	chr12:116434117	A	NA	10	0	10	38.700	2.312	0	0	0	10	0	MED13L	intronic	NA
MB_Group4_T1--3	chr12:116434117	A	G	70	0.057	65	36.585	5.062	4	37.000	1.633	61	4	MED13L	intronic	NA
MB_Group4_T1--4	chr12:116434117	A	NA	12	0	12	36.167	2.406	0	0	0	12	0	MED13L	intronic	NA
MB_Group4_T1--5	chr12:116434117	A	G	78	0.154	65	37.354	4.505	12	36.417	1.379	63	12	MED13L	intronic	NA
MB_Group4_T1--6	chr12:116434117	A	G	14	0.071	13	36.385	4.519	1	34.000	0.000	12	1	MED13L	intronic	NA
MB_Group4_T1--GL	chr12:116434117	A	NA	43	0	43	37.326	3.242	0	0	0	41	0	MED13L	intronic	NA
MB_Group4_T1--1	chr12:121687911	C	NA	16	0	16	35.438	5.621	0	0	0	15	0	CAMKK2	intronic	NA
MB_Group4_T1--2	chr12:121687911	C	NA	12	0	12	39.000	2.892	0	0	0	12	0	CAMKK2	intronic	NA
MB_Group4_T1--3	chr12:121687911	C	NA	132	0	132	34.424	6.637	0	0	0	113	0	CAMKK2	intronic	NA
MB_Group4_T1--4	chr12:121687911	C	A	14	0.214	11	35.000	7.071	3	35.000	5.196	9	2	CAMKK2	intronic	NA
MB_Group4_T1--5	chr12:121687911	C	A	63	0.016	61	37.049	3.008	1	32.000	0.000	61	1	CAMKK2	intronic	NA
MB_Group4_T1--6	chr12:121687911	C	NA	15	0	15	34.600	4.968	0	0	0	14	0	CAMKK2	intronic	NA
MB_Group4_T1--GL	chr12:121687911	C	NA	39	0	39	35.821	4.388	0	0	0	36	0	CAMKK2	intronic	NA
MB_Group4_T1--1	chr12:122724232	G	T	29	0.138	25	35.840	3.997	4	38.500	1.000	23	4	VPS33A	intronic	NA
MB_Group4_T1--2	chr12:122724232	G	T	23	0.130	18	34.722	6.728	3	37.000	2.000	16	3	VPS33A	intronic	NA
MB_Group4_T1--3	chr12:122724232	G	T	55	0.109	49	34.735	6.258	6	37.333	1.506	42	6	VPS33A	intronic	NA
MB_Group4_T1--4	chr12:122724232	G	T	16	0.062	15	35.933	2.963	1	37.000	0.000	15	1	VPS33A	intronic	NA
MB_Group4_T1--5	chr12:122724232	G	T	92	0.196	66	34.924	4.996	18	37.500	2.307	60	18	VPS33A	intronic	NA
MB_Group4_T1--6	chr12:122724232	G	T	14	0.071	13	36.615	4.629	1	35.000	0.000	12	1	VPS33A	intronic	NA
MB_Group4_T1--GL	chr12:122724232	G	NA	41	0	41	35.951	3.788	0	0	0	40	0	VPS33A	intronic	NA
MB_Group4_T1--1	chr12:13004257	T	A	26	0.308	18	31.833	6.828	8	31.875	4.998	15	6	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--2	chr12:13004257	T	NA	15	0	14	32.714	3.791	0	0	0	11	0	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--3	chr12:13004257	T	A	73	0.027	71	31.873	4.878	2	28.500	9.192	57	1	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--4	chr12:13004257	T	NA	17	0	17	33.588	5.374	0	0	0	14	0	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--5	chr12:13004257	T	A	36	0.167	29	31.138	5.780	6	34.167	2.041	22	6	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--6	chr12:13004257	T	NA	12	0	12	29.583	5.992	0	0	0	7	0	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--GL	chr12:13004257	T	NA	71	0	70	31.971	3.901	0	0	0	60	0	DDX47(dist=21342),RPL13AP20(dist=24154)	intergenic	NA
MB_Group4_T1--1	chr12:15710229	A	G	19	0.105	17	34.235	6.610	2	34.000	0.000	14	2	PTPRO	intronic	NA
MB_Group4_T1--2	chr12:15710229	A	G	26	0.269	19	35.421	3.469	7	33.000	1.826	18	7	PTPRO	intronic	NA
MB_Group4_T1--3	chr12:15710229	A	NA	53	0	53	34.849	4.007	0	0	0	50	0	PTPRO	intronic	NA
MB_Group4_T1--4	chr12:15710229	A	NA	10	0	10	34.600	3.026	0	0	0	9	0	PTPRO	intronic	NA
MB_Group4_T1--5	chr12:15710229	A	G	37	0.135	32	34.781	5.179	5	34.800	3.271	30	5	PTPRO	intronic	NA
MB_Group4_T1--6	chr12:15710229	A	NA	11	0	11	33.455	2.806	0	0	0	10	0	PTPRO	intronic	NA
MB_Group4_T1--GL	chr12:15710229	A	NA	39	0	39	35.026	4.081	0	0	0	38	0	PTPRO	intronic	NA
MB_Group4_T1--1	chr12:15742209	G	C	18	0.111	16	38.750	2.408	2	29.500	6.364	16	1	PTPRO	intronic	NA
MB_Group4_T1--2	chr12:15742209	G	C	24	0.083	22	37.455	3.247	2	38.000	1.414	22	2	PTPRO	intronic	NA
MB_Group4_T1--3	chr12:15742209	G	C	61	0.049	58	37.500	5.041	3	37.667	1.155	56	3	PTPRO	intronic	NA
MB_Group4_T1--4	chr12:15742209	G	NA	13	0	11	37.455	3.643	0	0	0	11	0	PTPRO	intronic	NA
MB_Group4_T1--5	chr12:15742209	G	C	31	0.258	23	37.435	4.198	8	36.750	1.982	21	8	PTPRO	intronic	NA
MB_Group4_T1--6	chr12:15742209	G	C	10	0.100	9	34.000	11.124	1	37.000	0.000	8	1	PTPRO	intronic	NA
MB_Group4_T1--GL	chr12:15742209	G	NA	51	0	51	38.000	3.027	0	0	0	51	0	PTPRO	intronic	NA
MB_Group4_T1--1	chr12:16051024	A	T	35	0.257	25	38.960	1.791	9	35.000	5.745	25	7	STRAP	intronic	NA
MB_Group4_T1--2	chr12:16051024	A	NA	28	0	28	38.107	5.405	0	0	0	27	0	STRAP	intronic	NA
MB_Group4_T1--3	chr12:16051024	A	T	64	0.031	61	39.246	2.336	2	39.000	2.828	60	2	STRAP	intronic	NA
MB_Group4_T1--4	chr12:16051024	A	NA	25	0	25	38.920	2.159	0	0	0	25	0	STRAP	intronic	NA
MB_Group4_T1--5	chr12:16051024	A	NA	15	0	15	38.333	2.610	0	0	0	15	0	STRAP	intronic	NA
MB_Group4_T1--6	chr12:16051024	A	NA	11	0	11	37.364	2.420	0	0	0	11	0	STRAP	intronic	NA
MB_Group4_T1--GL	chr12:16051024	A	NA	67	0	66	38.500	2.627	0	0	0	65	0	STRAP	intronic	NA
MB_Group4_T1--1	chr1:218475747	C	NA	61	0	61	37.361	3.235	0	0	0	60	0	RRP15	exonic	stopgain_SNV
MB_Group4_T1--2	chr1:218475747	C	NA	50	0	50	37.740	2.813	0	0	0	50	0	RRP15	exonic	stopgain_SNV
MB_Group4_T1--3	chr1:218475747	C	A	116	0.009	115	38.070	2.985	1	37.000	0.000	114	1	RRP15	exonic	stopgain_SNV
MB_Group4_T1--4	chr1:218475747	C	A	27	0.148	23	36.696	4.415	4	37.000	2.828	20	4	RRP15	exonic	stopgain_SNV
MB_Group4_T1--5	chr1:218475747	C	NA	37	0	37	37.135	3.102	0	0	0	37	0	RRP15	exonic	stopgain_SNV
MB_Group4_T1--6	chr1:218475747	C	NA	24	0	24	37.833	2.426	0	0	0	24	0	RRP15	exonic	stopgain_SNV
MB_Group4_T1--GL	chr1:218475747	C	NA	122	0	122	37.549	3.186	0	0	0	119	0	RRP15	exonic	stopgain_SNV
MB_Group4_T1--1	chr1:220326433	A	NA	33	0	33	37.424	3.052	0	0	0	32	0	RAB3GAP2	intronic	NA
MB_Group4_T1--2	chr1:220326433	A	NA	20	0	20	36.000	6.852	0	0	0	18	0	RAB3GAP2	intronic	NA
MB_Group4_T1--3	chr1:220326433	A	NA	67	0	67	36.940	3.597	0	0	0	65	0	RAB3GAP2	intronic	NA
MB_Group4_T1--4	chr1:220326433	A	G	14	0.214	11	37.182	2.523	3	35.667	3.512	11	3	RAB3GAP2	intronic	NA
MB_Group4_T1--5	chr1:220326433	A	NA	24	0	24	35.792	5.200	0	0	0	22	0	RAB3GAP2	intronic	NA
MB_Group4_T1--6	chr1:220326433	A	NA	15	0	15	35.800	8.213	0	0	0	14	0	RAB3GAP2	intronic	NA
MB_Group4_T1--GL	chr1:220326433	A	NA	66	0	66	34.955	5.070	0	0	0	61	0	RAB3GAP2	intronic	NA
MB_Group4_T1--1	chr1:220327135	A	NA	21	0	21	35.333	5.730	0	0	0	17	0	RAB3GAP2	intronic	NA
MB_Group4_T1--2	chr1:220327135	A	T	22	0.045	21	36.190	3.265	1	41.000	0.000	21	1	RAB3GAP2	intronic	NA
MB_Group4_T1--3	chr1:220327135	A	NA	77	0	76	35.711	4.996	0	0	0	67	0	RAB3GAP2	intronic	NA
MB_Group4_T1--4	chr1:220327135	A	NA	17	0	17	36.412	8.559	0	0	0	15	0	RAB3GAP2	intronic	NA
MB_Group4_T1--5	chr1:220327135	A	T	32	0.219	25	36.360	5.275	7	33.571	7.368	23	6	RAB3GAP2	intronic	NA
MB_Group4_T1--6	chr1:220327135	A	NA	12	0	11	30.455	9.522	0	0	0	6	0	RAB3GAP2	intronic	NA
MB_Group4_T1--GL	chr1:220327135	A	NA	60	0	59	36.915	4.691	0	0	0	57	0	RAB3GAP2	intronic	NA
MB_Group4_T1--1	chr1:220327136	C	NA	21	0	21	37.619	2.872	0	0	0	21	0	RAB3GAP2	intronic	NA
MB_Group4_T1--2	chr1:220327136	C	NA	22	0	22	37.318	3.591	0	0	0	21	0	RAB3GAP2	intronic	NA
MB_Group4_T1--3	chr1:220327136	C	NA	80	0	80	37.388	3.726	0	0	0	78	0	RAB3GAP2	intronic	NA
MB_Group4_T1--4	chr1:220327136	C	NA	19	0	19	37.579	4.260	0	0	0	18	0	RAB3GAP2	intronic	NA
MB_Group4_T1--5	chr1:220327136	C	T	33	0.212	26	37.538	3.444	7	33.000	10.149	26	6	RAB3GAP2	intronic	NA
MB_Group4_T1--6	chr1:220327136	C	NA	14	0	14	35.286	7.508	0	0	0	13	0	RAB3GAP2	intronic	NA
MB_Group4_T1--GL	chr1:220327136	C	NA	64	0	64	37.188	3.694	0	0	0	63	0	RAB3GAP2	intronic	NA
MB_Group4_T1--1	chr1:220375455	T	C	21	0.333	14	36.143	2.797	7	35.429	3.359	14	6	RAB3GAP2	intronic	NA
MB_Group4_T1--2	chr1:220375455	T	C	25	0.240	19	35.158	3.548	6	35.000	3.633	17	5	RAB3GAP2	intronic	NA
MB_Group4_T1--3	chr1:220375455	T	C	50	0.280	36	36.000	3.787	14	36.429	1.399	34	14	RAB3GAP2	intronic	NA
MB_Group4_T1--4	chr1:220375455	T	C	15	0.200	12	36.667	2.146	3	35.667	1.155	12	3	RAB3GAP2	intronic	NA
MB_Group4_T1--5	chr1:220375455	T	C	71	0.535	33	36.970	5.022	38	34.263	6.246	30	34	RAB3GAP2	intronic	NA
MB_Group4_T1--6	chr1:220375455	T	C	20	0.400	12	37.167	2.725	8	35.875	1.246	12	8	RAB3GAP2	intronic	NA
MB_Group4_T1--GL	chr1:220375455	T	NA	33	0	33	36.939	3.588	0	0	0	32	0	RAB3GAP2	intronic	NA
MB_Group4_T1--1	chr1:220375456	G	A	21	0.333	14	37.214	1.847	7	35.857	1.574	14	7	RAB3GAP2	intronic	NA
MB_Group4_T1--2	chr1:220375456	G	A	25	0.240	19	32.684	8.551	6	36.667	0.816	16	6	RAB3GAP2	intronic	NA
MB_Group4_T1--3	chr1:220375456	G	A	50	0.280	36	36.250	3.775	14	36.214	1.369	35	14	RAB3GAP2	intronic	NA
MB_Group4_T1--4	chr1:220375456	G	A	15	0.200	12	36.917	2.906	3	37.000	0.000	12	3	RAB3GAP2	intronic	NA
MB_Group4_T1--5	chr1:220375456	G	A	71	0.535	33	37.636	3.219	38	34.553	5.717	32	33	RAB3GAP2	intronic	NA
MB_Group4_T1--6	chr1:220375456	G	A	20	0.400	12	36.833	2.949	8	36.500	0.926	12	8	RAB3GAP2	intronic	NA
MB_Group4_T1--GL	chr1:220375456	G	NA	34	0	34	35.853	6.505	0	0	0	32	0	RAB3GAP2	intronic	NA
MB_Group4_T1--1	chr1:222715425	A	G	93	0.086	85	37.671	2.872	8	37.125	1.727	84	8	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:222715425	A	G	66	0.197	53	37.868	3.000	13	35.846	3.078	52	12	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:222715425	A	G	197	0.046	188	37.202	4.257	9	37.111	1.269	181	9	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:222715425	A	G	33	0.242	25	36.760	3.333	8	34.750	3.655	24	7	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:222715425	A	G	96	0.104	86	37.837	3.013	10	35.200	2.860	85	10	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:222715425	A	G	37	0.189	30	37.000	5.343	7	37.000	0.000	28	7	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:222715425	A	NA	132	0	132	37.485	3.769	0	0	0	126	0	HHIPL2	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:226349111	C	G	38	0.132	31	37.710	4.117	5	35.400	2.074	30	5	ACBD3	intronic	NA
MB_Group4_T1--2	chr1:226349111	C	NA	24	0	24	38.708	2.255	0	0	0	24	0	ACBD3	intronic	NA
MB_Group4_T1--3	chr1:226349111	C	G	95	0.011	94	36.479	6.867	1	37.000	0.000	85	1	ACBD3	intronic	NA
MB_Group4_T1--4	chr1:226349111	C	NA	16	0	16	37.062	4.932	0	0	0	15	0	ACBD3	intronic	NA
MB_Group4_T1--5	chr1:226349111	C	G	42	0.238	30	37.533	3.421	10	29.500	10.617	29	7	ACBD3	intronic	NA
MB_Group4_T1--6	chr1:226349111	C	G	19	0.053	18	38.500	2.936	1	37.000	0.000	18	1	ACBD3	intronic	NA
MB_Group4_T1--GL	chr1:226349111	C	NA	77	0	76	38.303	3.963	0	0	0	73	0	ACBD3	intronic	NA
MB_Group4_T1--1	chr1:228160505	C	T	70	0.357	45	33.867	5.711	25	36.480	1.503	38	25	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--2	chr1:228160505	C	T	40	0.375	25	35.640	4.490	15	36.867	0.640	23	15	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--3	chr1:228160505	C	T	225	0.044	214	35.168	4.894	10	36.600	0.843	193	10	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--4	chr1:228160505	C	T	25	0.320	17	32.941	7.075	8	35.125	3.044	13	7	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--5	chr1:228160505	C	T	256	0.215	201	34.766	4.908	55	35.182	6.418	184	51	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--6	chr1:228160505	C	T	32	0.156	27	34.037	5.701	5	36.400	0.894	23	5	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--GL	chr1:228160505	C	NA	48	0	46	34.804	4.470	0	0	0	42	0	WNT9A(dist=24829),WNT3A(dist=34218)	intergenic	NA
MB_Group4_T1--1	chr1:228160506	C	G	70	0.357	45	34.356	4.270	25	35.920	2.565	41	24	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--2	chr1:228160506	C	G	40	0.375	24	35.917	4.293	15	36.000	2.035	22	15	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--3	chr1:228160506	C	G	221	0.045	211	35.043	5.326	10	36.400	0.966	188	10	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--4	chr1:228160506	C	G	25	0.320	17	32.706	8.387	8	34.500	3.546	13	7	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--5	chr1:228160506	C	G	254	0.217	199	34.889	4.785	55	36.055	2.940	184	53	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--6	chr1:228160506	C	G	32	0.156	27	34.704	5.135	5	35.800	1.095	25	5	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--GL	chr1:228160506	C	NA	48	0	48	35.375	3.541	0	0	0	46	0	WNT9A(dist=24830),WNT3A(dist=34217)	intergenic	NA
MB_Group4_T1--1	chr1:228160584	G	A	41	0.195	33	35.182	5.422	8	35.500	2.928	30	8	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--2	chr1:228160584	G	A	32	0.062	29	36.862	3.170	2	33.000	2.828	29	2	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--3	chr1:228160584	G	A	159	0.025	155	36.155	3.264	4	34.000	4.082	152	3	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--4	chr1:228160584	G	NA	12	0	12	36.417	4.252	0	0	0	12	0	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--5	chr1:228160584	G	A	121	0.066	112	36.125	3.732	8	34.000	4.928	107	6	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--6	chr1:228160584	G	A	23	0.043	22	36.409	3.594	1	34.000	0.000	21	1	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--GL	chr1:228160584	G	NA	40	0	40	36.650	2.617	0	0	0	40	0	WNT9A(dist=24908),WNT3A(dist=34139)	intergenic	NA
MB_Group4_T1--1	chr1:228160588	A	T	45	0.178	37	34.973	7.061	8	37.000	1.069	32	8	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--2	chr1:228160588	A	T	35	0.086	32	35.719	6.321	3	36.333	1.155	29	3	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--3	chr1:228160588	A	T	164	0.030	159	36.245	4.214	5	36.600	2.191	149	5	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--4	chr1:228160588	A	NA	12	0	12	36.833	1.946	0	0	0	12	0	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--5	chr1:228160588	A	T	122	0.066	114	35.702	5.295	8	36.500	1.773	106	8	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--6	chr1:228160588	A	T	22	0.045	21	36.190	4.905	1	37.000	0.000	20	1	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--GL	chr1:228160588	A	NA	38	0	38	36.921	3.079	0	0	0	37	0	WNT9A(dist=24912),WNT3A(dist=34135)	intergenic	NA
MB_Group4_T1--1	chr1:231506698	C	NA	25	0	25	36.840	4.488	0	0	0	24	0	EGLN1	intronic	NA
MB_Group4_T1--2	chr1:231506698	C	T	15	0.133	13	36.692	2.136	2	23.000	19.799	13	1	EGLN1	intronic	NA
MB_Group4_T1--3	chr1:231506698	C	T	66	0.091	60	36.767	3.652	6	36.667	0.816	57	6	EGLN1	intronic	NA
MB_Group4_T1--4	chr1:231506698	C	NA	12	0	12	35.417	3.175	0	0	0	11	0	EGLN1	intronic	NA
MB_Group4_T1--5	chr1:231506698	C	T	54	0.222	42	36.905	3.019	12	37.000	0.853	41	12	EGLN1	intronic	NA
MB_Group4_T1--6	chr1:231506698	C	NA	11	0	11	34.909	3.700	0	0	0	10	0	EGLN1	intronic	NA
MB_Group4_T1--GL	chr1:231506698	C	NA	42	0	41	37.537	2.950	0	0	0	41	0	EGLN1	intronic	NA
MB_Group4_T1--1	chr1:231506699	A	G	25	0.080	23	36.261	4.081	2	39.500	0.707	21	2	EGLN1	intronic	NA
MB_Group4_T1--2	chr1:231506699	A	G	15	0.133	13	36.231	2.774	2	31.000	8.485	13	1	EGLN1	intronic	NA
MB_Group4_T1--3	chr1:231506699	A	G	66	0.091	60	36.683	4.663	6	36.333	1.633	59	6	EGLN1	intronic	NA
MB_Group4_T1--4	chr1:231506699	A	NA	12	0	12	36.250	2.800	0	0	0	12	0	EGLN1	intronic	NA
MB_Group4_T1--5	chr1:231506699	A	G	54	0.278	39	37.385	2.691	15	37.000	1.069	39	15	EGLN1	intronic	NA
MB_Group4_T1--6	chr1:231506699	A	NA	11	0	11	34.091	6.123	0	0	0	10	0	EGLN1	intronic	NA
MB_Group4_T1--GL	chr1:231506699	A	NA	41	0	41	37.122	3.887	0	0	0	39	0	EGLN1	intronic	NA
MB_Group4_T1--1	chr12:32764330	T	A	18	0.056	17	37.471	3.573	1	37.000	0.000	17	1	FGD4	intronic	NA
MB_Group4_T1--2	chr12:32764330	T	NA	21	0	21	36.143	3.915	0	0	0	20	0	FGD4	intronic	NA
MB_Group4_T1--3	chr12:32764330	T	A	68	0.044	65	37.277	3.769	3	36.333	1.155	63	3	FGD4	intronic	NA
MB_Group4_T1--4	chr12:32764330	T	NA	12	0	12	35.917	6.201	0	0	0	11	0	FGD4	intronic	NA
MB_Group4_T1--5	chr12:32764330	T	A	52	0.212	41	37.634	2.956	11	35.636	1.286	41	11	FGD4	intronic	NA
MB_Group4_T1--6	chr12:32764330	T	A	13	0.154	11	38.364	3.075	2	36.000	1.414	11	2	FGD4	intronic	NA
MB_Group4_T1--GL	chr12:32764330	T	NA	76	0	76	36.053	4.869	0	0	0	71	0	FGD4	intronic	NA
MB_Group4_T1--1	chr1:235601832	T	C	39	0.051	37	36.162	5.585	2	37.000	0.000	31	2	TBCE	intronic	NA
MB_Group4_T1--2	chr1:235601832	T	C	43	0.023	42	37.429	3.915	1	35.000	0.000	41	1	TBCE	intronic	NA
MB_Group4_T1--3	chr1:235601832	T	C	94	0.043	90	37.311	4.271	4	36.000	2.000	88	4	TBCE	intronic	NA
MB_Group4_T1--4	chr1:235601832	T	C	11	0.273	8	34.625	3.889	3	37.000	0.000	7	3	TBCE	intronic	NA
MB_Group4_T1--5	chr1:235601832	T	C	142	0.120	125	36.808	4.111	17	35.706	2.845	117	16	TBCE	intronic	NA
MB_Group4_T1--6	chr1:235601832	T	C	23	0.130	20	35.550	8.971	3	37.000	0.000	18	3	TBCE	intronic	NA
MB_Group4_T1--GL	chr1:235601832	T	NA	56	0	56	36.357	4.458	0	0	0	52	0	TBCE	intronic	NA
MB_Group4_T1--1	chr1:235918638	G	A	35	0.143	30	35.933	4.354	5	36.600	0.894	26	5	LYST	intronic	NA
MB_Group4_T1--2	chr1:235918638	G	NA	28	0	28	35.607	4.450	0	0	0	25	0	LYST	intronic	NA
MB_Group4_T1--3	chr1:235918638	G	A	62	0.048	58	35.017	5.306	3	36.333	1.155	49	3	LYST	intronic	NA
MB_Group4_T1--4	chr1:235918638	G	A	13	0.154	11	36.182	2.960	2	38.000	4.243	11	2	LYST	intronic	NA
MB_Group4_T1--5	chr1:235918638	G	A	45	0.156	38	35.395	5.207	7	36.714	0.756	34	7	LYST	intronic	NA
MB_Group4_T1--6	chr1:235918638	G	A	11	0.091	10	35.700	3.889	1	37.000	0.000	9	1	LYST	intronic	NA
MB_Group4_T1--GL	chr1:235918638	G	NA	60	0	60	34.983	5.312	0	0	0	52	0	LYST	intronic	NA
MB_Group4_T1--1	chr1:237060645	T	C	31	0.194	23	34.870	5.199	6	39.167	2.137	21	6	MTR	intronic	NA
MB_Group4_T1--2	chr1:237060645	T	C	32	0.250	23	35.043	3.637	8	38.250	3.240	22	8	MTR	intronic	NA
MB_Group4_T1--3	chr1:237060645	T	C	210	0.024	145	35.076	5.451	5	30.800	3.899	134	4	MTR	intronic	NA
MB_Group4_T1--4	chr1:237060645	T	NA	15	0	6	35.167	6.998	0	0	0	5	0	MTR	intronic	NA
MB_Group4_T1--5	chr1:237060645	T	C	85	0.200	56	34.518	6.707	17	34.882	6.254	48	16	MTR	intronic	NA
MB_Group4_T1--6	chr1:237060645	T	NA	16	0	8	34.750	10.152	0	0	0	7	0	MTR	intronic	NA
MB_Group4_T1--GL	chr1:237060645	T	NA	76	0	45	34.178	6.376	0	0	0	39	0	MTR	intronic	NA
MB_Group4_T1--1	chr12:40692003	T	NA	30	0	30	38.333	2.440	0	0	0	30	0	LRRK2	intronic	NA
MB_Group4_T1--2	chr12:40692003	T	NA	14	0	14	38.071	4.104	0	0	0	13	0	LRRK2	intronic	NA
MB_Group4_T1--3	chr12:40692003	T	NA	51	0	51	38.118	2.984	0	0	0	51	0	LRRK2	intronic	NA
MB_Group4_T1--4	chr12:40692003	T	C	15	0.267	11	39.182	1.537	4	38.750	1.708	11	4	LRRK2	intronic	NA
MB_Group4_T1--5	chr12:40692003	T	NA	18	0	18	39.111	3.660	0	0	0	17	0	LRRK2	intronic	NA
MB_Group4_T1--6	chr12:40692003	T	NA	11	0	11	39.182	2.228	0	0	0	11	0	LRRK2	intronic	NA
MB_Group4_T1--GL	chr12:40692003	T	NA	79	0	79	38.430	3.643	0	0	0	77	0	LRRK2	intronic	NA
MB_Group4_T1--1	chr1:247615075	C	NA	40	0	40	36.275	3.796	0	0	0	38	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--2	chr1:247615075	C	NA	38	0	38	36.500	5.213	0	0	0	36	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--3	chr1:247615075	C	NA	252	0	252	36.750	4.056	0	0	0	238	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--4	chr1:247615075	C	NA	21	0	21	37.143	2.594	0	0	0	21	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--5	chr1:247615075	C	G	94	0.170	76	35.487	5.400	16	36.375	4.515	70	15	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--6	chr1:247615075	C	NA	26	0	26	36.000	3.919	0	0	0	24	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--GL	chr1:247615075	C	NA	58	0	58	37.655	2.712	0	0	0	58	0	OR2B11	exonic	synonymous_SNV
MB_Group4_T1--1	chr12:48921850	C	NA	22	0	22	34.045	5.066	0	0	0	20	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--2	chr12:48921850	C	NA	23	0	23	34.696	3.496	0	0	0	21	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--3	chr12:48921850	C	NA	68	0	68	35.353	4.356	0	0	0	66	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--4	chr12:48921850	C	NA	12	0	12	34.500	2.844	0	0	0	11	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--5	chr12:48921850	C	NA	67	0	67	35.597	4.799	0	0	0	65	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--6	chr12:48921850	C	A	10	0.300	7	31.429	5.127	3	34.000	1.000	5	3	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--GL	chr12:48921850	C	NA	35	0	35	34.486	5.158	0	0	0	31	0	OR8S1	exonic	stopgain_SNV
MB_Group4_T1--1	chr12:53188069	T	NA	41	0	41	36.024	3.574	0	0	0	40	0	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr12:53188069	T	NA	31	0	31	36.484	5.291	0	0	0	28	0	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr12:53188069	T	G	136	0.162	114	34.772	6.365	22	36.773	5.398	99	21	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr12:53188069	T	NA	29	0	29	36.069	3.918	0	0	0	28	0	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr12:53188069	T	G	52	0.096	47	35.957	4.639	5	34.400	0.894	43	5	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr12:53188069	T	G	26	0.038	25	36.560	3.874	1	35.000	0.000	24	1	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr12:53188069	T	NA	107	0	107	35.804	4.435	0	0	0	101	0	KRT3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:55688653	C	T	36	0.056	34	38.382	4.619	2	39.000	2.828	33	2	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr12:55688653	C	T	22	0.182	18	37.333	3.162	4	37.250	3.862	18	4	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr12:55688653	C	T	84	0.036	81	37.988	3.261	3	36.000	4.583	80	3	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr12:55688653	C	T	27	0.037	26	38.115	2.984	1	39.000	0.000	26	1	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr12:55688653	C	T	23	0.087	21	37.667	3.610	2	39.000	2.828	21	2	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr12:55688653	C	T	28	0.071	26	37.077	4.417	2	36.000	1.414	24	2	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr12:55688653	C	NA	98	0	98	37.776	3.397	0	0	0	96	0	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:55688863	G	A	33	0.061	31	38.613	2.629	2	37.000	0.000	31	2	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr12:55688863	G	A	23	0.043	22	38.682	2.234	1	37.000	0.000	22	1	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr12:55688863	G	A	56	0.036	54	38.204	3.372	2	37.500	0.707	52	2	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr12:55688863	G	A	23	0.043	22	35.773	5.282	1	37.000	0.000	19	1	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr12:55688863	G	NA	15	0	15	37.200	4.443	0	0	0	14	0	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr12:55688863	G	A	22	0.227	17	37.471	2.267	5	35.600	2.191	17	5	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr12:55688863	G	NA	82	0	82	37.341	4.188	0	0	0	78	0	OR6C6	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:55688864	G	T	33	0.061	31	38.097	3.048	2	37.000	0.000	31	2	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--2	chr12:55688864	G	T	23	0.043	20	38.100	3.042	1	37.000	0.000	19	1	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--3	chr12:55688864	G	T	55	0.018	54	37.833	3.173	1	37.000	0.000	53	1	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--4	chr12:55688864	G	T	23	0.043	22	37.227	2.975	1	37.000	0.000	22	1	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--5	chr12:55688864	G	NA	16	0	16	34.938	6.952	0	0	0	12	0	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--6	chr12:55688864	G	T	22	0.227	17	37.412	2.181	5	36.200	1.095	17	5	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr12:55688864	G	NA	83	0	83	37.434	3.489	0	0	0	82	0	OR6C6	exonic	synonymous_SNV
MB_Group4_T1--1	chr12:56417707	A	NA	14	0	14	38.214	4.475	0	0	0	13	0	IKZF4	intronic	NA
MB_Group4_T1--2	chr12:56417707	A	G	15	0.200	12	39.833	2.082	3	40.333	0.577	12	3	IKZF4	intronic	NA
MB_Group4_T1--3	chr12:56417707	A	NA	91	0	91	39.044	3.204	0	0	0	89	0	IKZF4	intronic	NA
MB_Group4_T1--4	chr12:56417707	A	NA	13	0	13	37.462	4.576	0	0	0	12	0	IKZF4	intronic	NA
MB_Group4_T1--5	chr12:56417707	A	NA	41	0	41	37.512	5.801	0	0	0	39	0	IKZF4	intronic	NA
MB_Group4_T1--6	chr12:56417707	A	NA	11	0	11	37.545	4.435	0	0	0	10	0	IKZF4	intronic	NA
MB_Group4_T1--GL	chr12:56417707	A	NA	42	0	42	38.762	2.418	0	0	0	42	0	IKZF4	intronic	NA
MB_Group4_T1--1	chr12:56493362	T	C	81	0.198	64	32.641	6.547	16	35.250	7.132	52	15	ERBB3	intronic	NA
MB_Group4_T1--2	chr12:56493362	T	C	74	0.270	54	33.648	5.937	20	37.050	3.348	46	19	ERBB3	intronic	NA
MB_Group4_T1--3	chr12:56493362	T	C	245	0.053	232	33.345	6.304	13	35.615	7.869	199	12	ERBB3	intronic	NA
MB_Group4_T1--4	chr12:56493362	T	C	38	0.184	31	32.323	7.148	7	36.429	2.760	27	7	ERBB3	intronic	NA
MB_Group4_T1--5	chr12:56493362	T	C	213	0.117	188	33.596	5.571	25	34.080	9.643	158	21	ERBB3	intronic	NA
MB_Group4_T1--6	chr12:56493362	T	C	38	0.184	31	35.871	2.655	7	37.429	3.359	31	7	ERBB3	intronic	NA
MB_Group4_T1--GL	chr12:56493362	T	NA	114	0	114	33.228	5.603	0	0	0	98	0	ERBB3	intronic	NA
MB_Group4_T1--1	chr1:2629297	A	G	20	0.050	19	37.263	2.600	1	35.000	0.000	19	1	TTC34	intronic	NA
MB_Group4_T1--2	chr1:2629297	A	G	19	0.211	15	34.733	7.787	4	36.000	3.464	14	4	TTC34	intronic	NA
MB_Group4_T1--3	chr1:2629297	A	G	133	0.030	129	35.907	3.854	4	33.250	2.630	123	4	TTC34	intronic	NA
MB_Group4_T1--4	chr1:2629297	A	G	11	0.091	10	36.300	3.917	1	41.000	0.000	9	1	TTC34	intronic	NA
MB_Group4_T1--5	chr1:2629297	A	G	132	0.038	127	35.583	5.252	5	38.400	3.130	111	5	TTC34	intronic	NA
MB_Group4_T1--6	chr1:2629297	A	NA	15	0	15	37.000	2.563	0	0	0	15	0	TTC34	intronic	NA
MB_Group4_T1--GL	chr1:2629297	A	NA	51	0	51	34.961	5.411	0	0	0	47	0	TTC34	intronic	NA
MB_Group4_T1--1	chr12:64017698	G	A	17	0.118	15	37.533	3.204	2	38.000	1.414	15	2	DPY19L2	intronic	NA
MB_Group4_T1--2	chr12:64017698	G	A	16	0.250	12	34.333	10.228	4	37.000	0.000	10	4	DPY19L2	intronic	NA
MB_Group4_T1--3	chr12:64017698	G	A	53	0.170	44	36.864	5.210	9	36.556	1.333	41	9	DPY19L2	intronic	NA
MB_Group4_T1--4	chr12:64017698	G	A	17	0.235	13	37.462	3.886	4	36.000	3.464	13	4	DPY19L2	intronic	NA
MB_Group4_T1--5	chr12:64017698	G	A	43	0.256	32	36.781	3.471	11	36.364	1.567	31	11	DPY19L2	intronic	NA
MB_Group4_T1--6	chr12:64017698	G	NA	10	0	10	37.100	3.315	0	0	0	10	0	DPY19L2	intronic	NA
MB_Group4_T1--GL	chr12:64017698	G	NA	43	0	43	37.651	3.538	0	0	0	40	0	DPY19L2	intronic	NA
MB_Group4_T1--1	chr12:64109225	A	NA	51	0	51	38.078	3.291	0	0	0	50	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--2	chr12:64109225	A	NA	34	0	34	38.059	3.133	0	0	0	33	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--3	chr12:64109225	A	NA	72	0	72	37.264	3.878	0	0	0	70	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--4	chr12:64109225	A	NA	30	0	30	37.700	3.761	0	0	0	29	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--5	chr12:64109225	A	NA	19	0	19	37.789	3.425	0	0	0	18	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--6	chr12:64109225	A	G	24	0.167	20	36.400	7.351	4	37.750	2.062	19	4	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--GL	chr12:64109225	A	NA	112	0	112	38.366	3.010	0	0	0	111	0	DPY19L2(dist=46871),TMEM5(dist=64358)	intergenic	NA
MB_Group4_T1--1	chr12:64118429	C	A	14	0.214	11	38.364	3.906	3	39.000	2.646	11	3	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--2	chr12:64118429	C	NA	17	0	17	36.941	4.630	0	0	0	16	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--3	chr12:64118429	C	NA	68	0	68	38.691	3.192	0	0	0	66	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--4	chr12:64118429	C	NA	11	0	11	38.000	5.514	0	0	0	10	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--5	chr12:64118429	C	NA	19	0	19	39.263	2.469	0	0	0	19	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--6	chr12:64118429	C	NA	14	0	14	38.929	2.586	0	0	0	14	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--GL	chr12:64118429	C	NA	54	0	54	38.056	4.354	0	0	0	51	0	DPY19L2(dist=56075),TMEM5(dist=55154)	intergenic	NA
MB_Group4_T1--1	chr12:66858992	T	C	12	0.083	11	36.818	1.601	1	39.000	0.000	11	1	GRIP1	intronic	NA
MB_Group4_T1--2	chr12:66858992	T	C	15	0.267	11	34.818	4.285	4	36.750	0.500	10	4	GRIP1	intronic	NA
MB_Group4_T1--3	chr12:66858992	T	NA	32	0	32	34.656	4.367	0	0	0	29	0	GRIP1	intronic	NA
MB_Group4_T1--4	chr12:66858992	T	NA	11	0	11	33.182	8.171	0	0	0	9	0	GRIP1	intronic	NA
MB_Group4_T1--5	chr12:66858992	T	C	31	0.194	24	33.375	6.330	6	33.500	4.550	20	5	GRIP1	intronic	NA
MB_Group4_T1--6	chr12:66858992	T	C	10	0.200	8	34.500	2.449	2	36.000	1.414	8	2	GRIP1	intronic	NA
MB_Group4_T1--GL	chr12:66858992	T	NA	41	0	41	35.073	3.197	0	0	0	38	0	GRIP1	intronic	NA
MB_Group4_T1--1	chr12:7045900	G	NA	50	0	20	33.700	2.494	0	0	0	18	0	ATN1	exonic	synonymous_SNV
MB_Group4_T1--2	chr12:7045900	G	NA	38	0	12	35.000	1.859	0	0	0	12	0	ATN1	exonic	synonymous_SNV
MB_Group4_T1--3	chr12:7045900	G	NA	188	0	77	33.143	4.119	0	0	0	67	0	ATN1	exonic	synonymous_SNV
MB_Group4_T1--4	chr12:7045900	G	NA	22	0	8	32.500	3.854	0	0	0	6	0	ATN1	exonic	synonymous_SNV
MB_Group4_T1--5	chr12:7045900	G	A	126	0.040	58	32.328	6.632	5	34.400	5.550	49	4	ATN1	exonic	synonymous_SNV
MB_Group4_T1--6	chr12:7045900	G	A	24	0.167	10	33.000	5.011	4	32.250	4.856	9	3	ATN1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr12:7045900	G	NA	90	0	37	33.216	5.588	0	0	0	34	0	ATN1	exonic	synonymous_SNV
MB_Group4_T1--1	chr12:76450533	T	C	20	0.100	18	36.222	6.950	2	35.000	0.000	17	2	NAP1L1	intronic	NA
MB_Group4_T1--2	chr12:76450533	T	C	20	0.250	15	36.533	5.643	5	36.200	3.033	14	5	NAP1L1	intronic	NA
MB_Group4_T1--3	chr12:76450533	T	NA	25	0	25	37.400	2.799	0	0	0	25	0	NAP1L1	intronic	NA
MB_Group4_T1--4	chr12:76450533	T	C	11	0.091	10	38.600	3.062	1	35.000	0.000	10	1	NAP1L1	intronic	NA
MB_Group4_T1--5	chr12:76450533	T	C	22	0.045	21	37.905	4.603	1	37.000	0.000	20	1	NAP1L1	intronic	NA
MB_Group4_T1--6	chr12:76450533	T	NA	12	0	12	38.750	2.301	0	0	0	12	0	NAP1L1	intronic	NA
MB_Group4_T1--GL	chr12:76450533	T	NA	44	0	44	38.068	2.327	0	0	0	44	0	NAP1L1	intronic	NA
MB_Group4_T1--1	chr1:28800595	C	A	18	0.167	15	37.533	2.949	3	38.000	3.464	15	3	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:28800595	C	NA	26	0	26	39.077	2.134	0	0	0	26	0	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:28800595	C	NA	133	0	133	37.218	4.481	0	0	0	127	0	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:28800595	C	NA	14	0	14	38.143	3.371	0	0	0	13	0	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:28800595	C	A	56	0.036	54	37.037	4.111	2	36.000	7.071	52	2	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:28800595	C	NA	18	0	18	38.778	2.713	0	0	0	18	0	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:28800595	C	NA	79	0	79	37.658	3.987	0	0	0	77	0	PHACTR4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr12:98931353	A	NA	39	0	38	35.868	5.901	0	0	0	37	0	TMPO	intronic	NA
MB_Group4_T1--2	chr12:98931353	A	NA	32	0	32	35.500	5.628	0	0	0	29	0	TMPO	intronic	NA
MB_Group4_T1--3	chr12:98931353	A	G	91	0.143	78	36.141	4.538	13	35.923	4.716	76	12	TMPO	intronic	NA
MB_Group4_T1--4	chr12:98931353	A	NA	32	0	32	36.250	4.303	0	0	0	31	0	TMPO	intronic	NA
MB_Group4_T1--5	chr12:98931353	A	G	28	0.071	26	37.923	2.992	2	37.000	4.243	26	2	TMPO	intronic	NA
MB_Group4_T1--6	chr12:98931353	A	NA	14	0	14	37.714	3.148	0	0	0	14	0	TMPO	intronic	NA
MB_Group4_T1--GL	chr12:98931353	A	NA	83	0	83	36.277	5.246	0	0	0	77	0	TMPO	intronic	NA
MB_Group4_T1--1	chr12:99061141	A	NA	11	0	11	39.364	2.203	0	0	0	11	0	APAF1	intronic	NA
MB_Group4_T1--2	chr12:99061141	A	NA	17	0	17	38.647	2.849	0	0	0	17	0	APAF1	intronic	NA
MB_Group4_T1--3	chr12:99061141	A	NA	67	0	67	37.299	5.228	0	0	0	65	0	APAF1	intronic	NA
MB_Group4_T1--4	chr12:99061141	A	NA	15	0	15	38.067	3.081	0	0	0	15	0	APAF1	intronic	NA
MB_Group4_T1--5	chr12:99061141	A	G	32	0.219	25	35.600	6.714	7	32.714	1.604	23	7	APAF1	intronic	NA
MB_Group4_T1--6	chr12:99061141	A	NA	16	0	12	36.833	7.030	0	0	0	11	0	APAF1	intronic	NA
MB_Group4_T1--GL	chr12:99061141	A	NA	53	0	53	37.623	3.819	0	0	0	51	0	APAF1	intronic	NA
MB_Group4_T1--1	chr12:99061145	T	NA	11	0	11	39.636	1.286	0	0	0	11	0	APAF1	intronic	NA
MB_Group4_T1--2	chr12:99061145	T	NA	17	0	17	38.882	2.261	0	0	0	17	0	APAF1	intronic	NA
MB_Group4_T1--3	chr12:99061145	T	C	67	0.015	66	38.197	5.749	1	32.000	0.000	63	1	APAF1	intronic	NA
MB_Group4_T1--4	chr12:99061145	T	NA	15	0	15	38.933	3.474	0	0	0	14	0	APAF1	intronic	NA
MB_Group4_T1--5	chr12:99061145	T	C	33	0.303	23	35.696	7.618	10	36.600	0.843	20	10	APAF1	intronic	NA
MB_Group4_T1--6	chr12:99061145	T	NA	16	0	12	37.333	6.679	0	0	0	11	0	APAF1	intronic	NA
MB_Group4_T1--GL	chr12:99061145	T	NA	52	0	51	38.843	2.796	0	0	0	51	0	APAF1	intronic	NA
MB_Group4_T1--1	chr12:993086	C	NA	31	0	31	35.387	5.414	0	0	0	27	0	WNK1	intronic	NA
MB_Group4_T1--2	chr12:993086	C	T	29	0.034	28	36.786	4.040	1	37.000	0.000	27	1	WNK1	intronic	NA
MB_Group4_T1--3	chr12:993086	C	T	79	0.025	77	36.377	3.313	2	37.000	0.000	74	2	WNK1	intronic	NA
MB_Group4_T1--4	chr12:993086	C	NA	15	0	15	37.933	2.251	0	0	0	15	0	WNK1	intronic	NA
MB_Group4_T1--5	chr12:993086	C	T	42	0.143	36	37.500	3.057	6	36.333	1.033	36	6	WNK1	intronic	NA
MB_Group4_T1--6	chr12:993086	C	T	11	0.091	10	37.400	2.675	1	37.000	0.000	10	1	WNK1	intronic	NA
MB_Group4_T1--GL	chr12:993086	C	NA	84	0	84	36.988	3.206	0	0	0	83	0	WNK1	intronic	NA
MB_Group4_T1--1	chr12:993087	A	G	29	0.034	28	34.500	6.619	1	37.000	0.000	24	1	WNK1	intronic	NA
MB_Group4_T1--2	chr12:993087	A	G	26	0.038	25	36.640	4.490	1	37.000	0.000	23	1	WNK1	intronic	NA
MB_Group4_T1--3	chr12:993087	A	G	76	0.026	74	36.486	3.067	2	37.000	0.000	72	2	WNK1	intronic	NA
MB_Group4_T1--4	chr12:993087	A	NA	15	0	15	37.533	2.900	0	0	0	15	0	WNK1	intronic	NA
MB_Group4_T1--5	chr12:993087	A	G	40	0.150	34	37.735	3.527	6	36.000	1.095	33	6	WNK1	intronic	NA
MB_Group4_T1--6	chr12:993087	A	G	10	0.100	9	37.222	2.635	1	37.000	0.000	9	1	WNK1	intronic	NA
MB_Group4_T1--GL	chr12:993087	A	NA	80	0	80	36.362	4.387	0	0	0	73	0	WNK1	intronic	NA
MB_Group4_T1--1	chr13:19761377	C	NA	31	0	31	37.645	3.220	0	0	0	30	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--2	chr13:19761377	C	A	20	0.200	16	36.188	3.655	4	36.750	2.872	16	4	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--3	chr13:19761377	C	NA	72	0	72	36.319	4.735	0	0	0	68	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--4	chr13:19761377	C	NA	19	0	19	36.789	3.190	0	0	0	18	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--5	chr13:19761377	C	NA	31	0	31	36.774	3.030	0	0	0	31	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--6	chr13:19761377	C	NA	19	0	19	36.053	3.865	0	0	0	18	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--GL	chr13:19761377	C	NA	70	0	70	36.600	4.137	0	0	0	68	0	TUBA3C(dist=5385),ANKRD26P3(dist=75563)	intergenic	NA
MB_Group4_T1--1	chr13:23915984	A	G	32	0.406	19	36.789	5.181	13	36.923	2.326	17	13	SACS	intronic	NA
MB_Group4_T1--2	chr13:23915984	A	G	25	0.200	19	36.105	4.829	5	37.000	0.000	18	5	SACS	intronic	NA
MB_Group4_T1--3	chr13:23915984	A	G	80	0.237	61	34.852	6.421	19	37.053	1.580	54	19	SACS	intronic	NA
MB_Group4_T1--4	chr13:23915984	A	G	14	0.143	12	37.833	2.623	2	37.500	0.707	12	2	SACS	intronic	NA
MB_Group4_T1--5	chr13:23915984	A	G	58	0.241	44	35.795	4.491	14	37.071	1.685	41	14	SACS	intronic	NA
MB_Group4_T1--6	chr13:23915984	A	NA	11	0	11	35.545	4.413	0	0	0	10	0	SACS	intronic	NA
MB_Group4_T1--GL	chr13:23915984	A	NA	52	0	52	35.442	5.707	0	0	0	49	0	SACS	intronic	NA
MB_Group4_T1--1	chr13:25484411	A	G	17	0.118	15	37.467	3.357	2	37.000	0.000	14	2	CENPJ	intronic	NA
MB_Group4_T1--2	chr13:25484411	A	G	14	0.143	12	36.583	4.122	2	37.000	0.000	11	2	CENPJ	intronic	NA
MB_Group4_T1--3	chr13:25484411	A	G	59	0.153	50	37.940	2.888	9	36.222	1.716	50	9	CENPJ	intronic	NA
MB_Group4_T1--4	chr13:25484411	A	G	10	0.200	8	36.250	2.866	2	36.000	1.414	8	2	CENPJ	intronic	NA
MB_Group4_T1--5	chr13:25484411	A	G	40	0.225	31	38.710	2.889	9	36.444	0.882	31	9	CENPJ	intronic	NA
MB_Group4_T1--6	chr13:25484411	A	G	13	0.154	11	34.818	5.759	2	37.000	0.000	9	2	CENPJ	intronic	NA
MB_Group4_T1--GL	chr13:25484411	A	NA	39	0	39	37.359	3.645	0	0	0	38	0	CENPJ	intronic	NA
MB_Group4_T1--1	chr13:25484414	T	NA	14	0	14	37.000	3.211	0	0	0	14	0	CENPJ	intronic	NA
MB_Group4_T1--2	chr13:25484414	T	A	14	0.143	12	34.500	8.130	2	37.000	0.000	11	2	CENPJ	intronic	NA
MB_Group4_T1--3	chr13:25484414	T	A	58	0.155	49	37.490	3.471	9	36.222	2.333	48	9	CENPJ	intronic	NA
MB_Group4_T1--4	chr13:25484414	T	A	11	0.182	9	35.444	2.186	2	28.000	12.728	9	1	CENPJ	intronic	NA
MB_Group4_T1--5	chr13:25484414	T	A	42	0.214	33	37.061	3.631	9	36.222	1.202	32	9	CENPJ	intronic	NA
MB_Group4_T1--6	chr13:25484414	T	A	13	0.154	11	35.091	3.506	2	37.000	0.000	10	2	CENPJ	intronic	NA
MB_Group4_T1--GL	chr13:25484414	T	NA	38	0	38	37.263	3.090	0	0	0	38	0	CENPJ	intronic	NA
MB_Group4_T1--1	chr1:32696890	A	G	12	0.167	10	37.000	2.357	2	37.000	0.000	10	2	EIF3I	UTR3	NA
MB_Group4_T1--2	chr1:32696890	A	G	27	0.222	21	36.048	2.974	6	36.667	0.816	20	6	EIF3I	UTR3	NA
MB_Group4_T1--3	chr1:32696890	A	G	67	0.075	62	36.081	3.609	5	31.200	5.070	60	3	EIF3I	UTR3	NA
MB_Group4_T1--4	chr1:32696890	A	NA	11	0	11	36.182	2.183	0	0	0	11	0	EIF3I	UTR3	NA
MB_Group4_T1--5	chr1:32696890	A	G	50	0.280	36	36.444	3.342	14	33.571	6.958	35	13	EIF3I	UTR3	NA
MB_Group4_T1--6	chr1:32696890	A	G	16	0.125	14	36.429	3.056	2	37.000	0.000	14	2	EIF3I	UTR3	NA
MB_Group4_T1--GL	chr1:32696890	A	NA	44	0	44	35.682	3.326	0	0	0	40	0	EIF3I	UTR3	NA
MB_Group4_T1--1	chr1:33263551	C	NA	19	0	19	32.737	6.862	0	0	0	16	0	YARS	intronic	NA
MB_Group4_T1--2	chr1:33263551	C	A	21	0.095	19	33.368	4.798	2	36.000	1.414	17	2	YARS	intronic	NA
MB_Group4_T1--3	chr1:33263551	C	A	105	0.067	98	33.990	4.873	7	36.143	1.069	85	7	YARS	intronic	NA
MB_Group4_T1--4	chr1:33263551	C	A	17	0.176	14	34.143	4.185	3	35.000	0.000	12	3	YARS	intronic	NA
MB_Group4_T1--5	chr1:33263551	C	A	64	0.219	50	33.360	7.690	14	35.071	2.674	43	13	YARS	intronic	NA
MB_Group4_T1--6	chr1:33263551	C	A	11	0.182	9	34.333	8.246	2	35.000	0.000	7	2	YARS	intronic	NA
MB_Group4_T1--GL	chr1:33263551	C	NA	81	0	81	34.444	4.804	0	0	0	74	0	YARS	intronic	NA
MB_Group4_T1--1	chr13:32744953	C	NA	34	0	33	35.000	4.596	0	0	0	31	0	FRY	intronic	NA
MB_Group4_T1--2	chr13:32744953	C	T	49	0.041	46	36.457	5.106	2	34.000	1.414	44	2	FRY	intronic	NA
MB_Group4_T1--3	chr13:32744953	C	T	48	0.042	46	34.826	4.260	2	34.500	0.707	41	2	FRY	intronic	NA
MB_Group4_T1--4	chr13:32744953	C	T	26	0.077	23	37.130	3.415	2	27.500	13.435	22	1	FRY	intronic	NA
MB_Group4_T1--5	chr13:32744953	C	T	59	0.051	56	35.607	4.913	3	34.667	2.517	52	3	FRY	intronic	NA
MB_Group4_T1--6	chr13:32744953	C	T	16	0.250	12	36.500	3.680	4	34.500	1.000	11	4	FRY	intronic	NA
MB_Group4_T1--GL	chr13:32744953	C	NA	39	0	39	36.154	4.152	0	0	0	37	0	FRY	intronic	NA
MB_Group4_T1--1	chr13:45971570	T	G	25	0.080	22	37.773	2.654	2	36.000	1.414	22	2	SLC25A30	intronic	NA
MB_Group4_T1--2	chr13:45971570	T	G	38	0.211	29	36.483	3.906	8	36.375	2.560	28	8	SLC25A30	intronic	NA
MB_Group4_T1--3	chr13:45971570	T	G	69	0.014	68	37.765	3.139	1	37.000	0.000	66	1	SLC25A30	intronic	NA
MB_Group4_T1--4	chr13:45971570	T	NA	20	0	20	37.300	2.179	0	0	0	20	0	SLC25A30	intronic	NA
MB_Group4_T1--5	chr13:45971570	T	G	61	0.164	48	37.229	3.441	10	34.200	5.996	45	9	SLC25A30	intronic	NA
MB_Group4_T1--6	chr13:45971570	T	G	20	0.100	18	37.722	3.739	2	37.000	2.828	17	2	SLC25A30	intronic	NA
MB_Group4_T1--GL	chr13:45971570	T	NA	58	0	58	37.603	2.622	0	0	0	58	0	SLC25A30	intronic	NA
MB_Group4_T1--1	chr13:48953841	C	T	49	0.184	40	37.450	3.501	9	38.000	1.581	39	9	RB1	intronic	NA
MB_Group4_T1--2	chr13:48953841	C	T	46	0.130	40	37.375	3.402	6	36.500	2.811	39	6	RB1	intronic	NA
MB_Group4_T1--3	chr13:48953841	C	T	67	0.015	65	37.046	3.739	1	35.000	0.000	60	1	RB1	intronic	NA
MB_Group4_T1--4	chr13:48953841	C	T	35	0.114	31	36.161	4.473	4	35.750	1.500	30	4	RB1	intronic	NA
MB_Group4_T1--5	chr13:48953841	C	T	49	0.102	44	37.295	4.397	5	38.200	2.683	41	5	RB1	intronic	NA
MB_Group4_T1--6	chr13:48953841	C	NA	16	0	16	37.250	2.793	0	0	0	16	0	RB1	intronic	NA
MB_Group4_T1--GL	chr13:48953841	C	NA	108	0	108	37.676	3.420	0	0	0	105	0	RB1	intronic	NA
MB_Group4_T1--1	chr13:49039093	A	T	56	0.268	40	39.100	2.437	15	22.133	10.322	39	6	RB1	intronic	NA
MB_Group4_T1--2	chr13:49039093	A	T	45	0.200	31	38.387	4.455	9	27.778	7.823	30	5	RB1	intronic	NA
MB_Group4_T1--3	chr13:49039093	A	NA	89	0	78	36.115	6.339	0	0	0	72	0	RB1	intronic	NA
MB_Group4_T1--4	chr13:49039093	A	T	45	0.200	34	37.471	5.976	9	28.111	8.681	32	5	RB1	intronic	NA
MB_Group4_T1--5	chr13:49039093	A	NA	48	0	39	37.359	4.493	0	0	0	35	0	RB1	intronic	NA
MB_Group4_T1--6	chr13:49039093	A	NA	25	0	19	38.842	2.141	0	0	0	19	0	RB1	intronic	NA
MB_Group4_T1--GL	chr13:49039093	A	NA	75	0	60	38.600	2.625	0	0	0	59	0	RB1	intronic	NA
MB_Group4_T1--1	chr13:52548915	G	NA	42	0	42	36.119	4.602	0	0	0	38	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--2	chr13:52548915	G	NA	43	0	43	35.395	4.905	0	0	0	37	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--3	chr13:52548915	G	NA	171	0	170	35.906	5.721	0	0	0	151	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--4	chr13:52548915	G	NA	36	0	36	35.889	5.610	0	0	0	33	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--5	chr13:52548915	G	T	61	0.180	50	36.460	3.721	11	37.364	3.443	47	11	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--6	chr13:52548915	G	NA	33	0	33	37.121	3.990	0	0	0	32	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--GL	chr13:52548915	G	NA	164	0	164	35.390	5.412	0	0	0	144	0	ATP7B	exonic	synonymous_SNV
MB_Group4_T1--1	chr13:53001483	A	G	23	0.217	18	36.278	4.956	5	37.600	1.342	17	5	VPS36	intronic	NA
MB_Group4_T1--2	chr13:53001483	A	G	23	0.043	22	37.545	2.632	1	37.000	0.000	22	1	VPS36	intronic	NA
MB_Group4_T1--3	chr13:53001483	A	G	63	0.032	60	36.533	4.789	2	36.000	1.414	54	2	VPS36	intronic	NA
MB_Group4_T1--4	chr13:53001483	A	NA	19	0	19	35.737	3.588	0	0	0	18	0	VPS36	intronic	NA
MB_Group4_T1--5	chr13:53001483	A	G	60	0.033	57	35.912	7.107	2	37.000	0.000	52	2	VPS36	intronic	NA
MB_Group4_T1--6	chr13:53001483	A	G	17	0.059	16	38.500	2.966	1	32.000	0.000	16	1	VPS36	intronic	NA
MB_Group4_T1--GL	chr13:53001483	A	NA	49	0	49	36.245	4.245	0	0	0	46	0	VPS36	intronic	NA
MB_Group4_T1--1	chr1:35654607	A	NA	60	0	60	36.567	3.702	0	0	0	57	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--2	chr1:35654607	A	NA	30	0	30	36.867	3.511	0	0	0	28	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--3	chr1:35654607	A	NA	117	0	117	36.615	2.906	0	0	0	117	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--4	chr1:35654607	A	T	31	0.258	23	37.043	2.705	8	36.125	5.276	23	7	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--5	chr1:35654607	A	NA	49	0	49	36.551	2.799	0	0	0	49	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--6	chr1:35654607	A	NA	25	0	25	37.000	3.571	0	0	0	24	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--GL	chr1:35654607	A	NA	99	0	99	36.354	3.237	0	0	0	97	0	SFPQ	exonic	stopgain_SNV
MB_Group4_T1--1	chr13:64406986	G	A	31	0.226	24	32.458	5.340	7	32.429	2.573	19	7	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--2	chr13:64406986	G	NA	31	0	24	36.167	3.726	0	0	0	23	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--3	chr13:64406986	G	NA	127	0	79	34.899	6.281	0	0	0	66	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--4	chr13:64406986	G	NA	27	0	16	35.938	3.855	0	0	0	15	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--5	chr13:64406986	G	NA	34	0	20	33.050	7.089	0	0	0	15	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--6	chr13:64406986	G	NA	25	0	17	36.294	5.543	0	0	0	16	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--GL	chr13:64406986	G	NA	64	0	47	37.362	3.110	0	0	0	46	0	OR7E156P(dist=90285),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chr13:64406988	T	C	30	0.300	21	29.619	9.537	9	32.889	2.977	14	7	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--2	chr13:64406988	T	NA	30	0	23	33.696	7.819	0	0	0	18	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--3	chr13:64406988	T	NA	127	0	79	34.139	6.848	0	0	0	63	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--4	chr13:64406988	T	NA	26	0	15	35.200	5.375	0	0	0	14	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--5	chr13:64406988	T	NA	34	0	19	33.000	5.487	0	0	0	15	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--6	chr13:64406988	T	NA	25	0	17	36.647	4.372	0	0	0	16	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--GL	chr13:64406988	T	NA	65	0	48	36.125	4.499	0	0	0	43	0	OR7E156P(dist=90287),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chr13:64406989	G	A	27	0.259	20	31.300	7.342	7	33.143	7.426	16	6	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--2	chr13:64406989	G	NA	30	0	23	35.913	7.096	0	0	0	22	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--3	chr13:64406989	G	NA	122	0	74	36.216	5.488	0	0	0	70	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--4	chr13:64406989	G	NA	24	0	13	37.077	3.451	0	0	0	13	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--5	chr13:64406989	G	NA	32	0	18	34.333	4.000	0	0	0	16	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--6	chr13:64406989	G	NA	25	0	17	35.706	6.342	0	0	0	15	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--GL	chr13:64406989	G	NA	63	0	46	37.391	3.518	0	0	0	43	0	OR7E156P(dist=90288),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chr13:68485132	G	T	21	0.476	11	38.091	3.448	10	36.200	2.821	11	10	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--2	chr13:68485132	G	T	11	0.091	10	38.300	3.561	1	37.000	0.000	10	1	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--3	chr13:68485132	G	T	50	0.160	42	37.524	4.062	8	36.625	2.669	41	8	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--4	chr13:68485132	G	NA	13	0	13	37.538	3.992	0	0	0	12	0	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--5	chr13:68485132	G	NA	16	0	16	37.188	5.706	0	0	0	15	0	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--6	chr13:68485132	G	NA	14	0	14	37.500	5.906	0	0	0	13	0	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--GL	chr13:68485132	G	NA	41	0	41	36.341	5.637	0	0	0	40	0	PCDH9(dist=680664),LINC00550(dist=950285)	intergenic	NA
MB_Group4_T1--1	chr13:78211388	T	C	20	0.600	5	33.800	6.723	12	38.167	1.749	4	12	SCEL	intronic	NA
MB_Group4_T1--2	chr13:78211388	T	C	26	0.346	13	38.077	1.256	9	38.444	2.128	13	9	SCEL	intronic	NA
MB_Group4_T1--3	chr13:78211388	T	C	89	0.393	39	37.641	3.004	35	37.229	2.891	38	35	SCEL	intronic	NA
MB_Group4_T1--4	chr13:78211388	T	NA	10	0	9	35.667	3.202	0	0	0	8	0	SCEL	intronic	NA
MB_Group4_T1--5	chr13:78211388	T	C	25	0.400	5	38.000	2.449	10	37.200	1.932	5	10	SCEL	intronic	NA
MB_Group4_T1--6	chr13:78211388	T	C	16	0.562	4	40.000	2.000	9	38.556	1.590	4	9	SCEL	intronic	NA
MB_Group4_T1--GL	chr13:78211388	T	NA	60	0	53	35.868	4.616	0	0	0	50	0	SCEL	intronic	NA
MB_Group4_T1--1	chr13:95114510	C	T	22	0.273	16	36.625	5.097	6	37.000	0.000	15	6	DCT	intronic	NA
MB_Group4_T1--2	chr13:95114510	C	T	21	0.095	19	38.211	2.800	2	37.000	0.000	19	2	DCT	intronic	NA
MB_Group4_T1--3	chr13:95114510	C	T	66	0.106	59	37.644	3.638	7	36.429	0.976	56	7	DCT	intronic	NA
MB_Group4_T1--4	chr13:95114510	C	T	18	0.056	17	37.765	2.562	1	35.000	0.000	17	1	DCT	intronic	NA
MB_Group4_T1--5	chr13:95114510	C	T	39	0.205	31	38.000	3.540	8	36.750	0.707	30	8	DCT	intronic	NA
MB_Group4_T1--6	chr13:95114510	C	T	12	0.083	11	38.091	3.015	1	35.000	0.000	11	1	DCT	intronic	NA
MB_Group4_T1--GL	chr13:95114510	C	NA	54	0	54	38.019	3.062	0	0	0	53	0	DCT	intronic	NA
MB_Group4_T1--1	chr1:40756381	G	A	16	0.250	12	38.000	3.162	4	34.500	5.568	12	3	ZMPSTE24	intronic	NA
MB_Group4_T1--2	chr1:40756381	G	A	16	0.188	13	38.769	2.920	3	31.667	2.082	13	3	ZMPSTE24	intronic	NA
MB_Group4_T1--3	chr1:40756381	G	A	64	0.141	55	37.727	5.226	9	32.000	8.485	53	8	ZMPSTE24	intronic	NA
MB_Group4_T1--4	chr1:40756381	G	A	13	0.308	9	34.778	10.414	4	33.500	2.646	8	4	ZMPSTE24	intronic	NA
MB_Group4_T1--5	chr1:40756381	G	A	59	0.203	47	37.915	3.906	12	34.083	2.746	45	12	ZMPSTE24	intronic	NA
MB_Group4_T1--6	chr1:40756381	G	A	15	0.133	13	38.538	2.222	2	35.000	2.828	13	2	ZMPSTE24	intronic	NA
MB_Group4_T1--GL	chr1:40756381	G	NA	40	0	40	36.675	6.746	0	0	0	38	0	ZMPSTE24	intronic	NA
MB_Group4_T1--1	chr1:40756385	T	G	16	0.250	11	38.182	2.857	4	38.000	2.000	11	4	ZMPSTE24	intronic	NA
MB_Group4_T1--2	chr1:40756385	T	G	16	0.188	13	39.692	1.653	3	36.333	1.155	13	3	ZMPSTE24	intronic	NA
MB_Group4_T1--3	chr1:40756385	T	G	64	0.125	55	38.927	3.686	8	36.750	0.707	54	8	ZMPSTE24	intronic	NA
MB_Group4_T1--4	chr1:40756385	T	G	13	0.308	9	37.333	5.000	4	34.500	5.000	8	3	ZMPSTE24	intronic	NA
MB_Group4_T1--5	chr1:40756385	T	G	61	0.230	43	38.977	3.349	14	35.357	5.286	42	13	ZMPSTE24	intronic	NA
MB_Group4_T1--6	chr1:40756385	T	G	15	0.133	13	38.000	4.082	2	35.000	0.000	13	2	ZMPSTE24	intronic	NA
MB_Group4_T1--GL	chr1:40756385	T	NA	40	0	40	37.775	5.289	0	0	0	38	0	ZMPSTE24	intronic	NA
MB_Group4_T1--1	chr14:102442287	C	A	34	0.176	27	37.815	3.552	6	37.500	1.225	27	6	DYNC1H1	intronic	NA
MB_Group4_T1--2	chr14:102442287	C	A	28	0.107	25	37.480	4.492	3	36.333	1.155	24	3	DYNC1H1	intronic	NA
MB_Group4_T1--3	chr14:102442287	C	A	102	0.078	93	38.065	3.813	8	36.750	0.707	90	8	DYNC1H1	intronic	NA
MB_Group4_T1--4	chr14:102442287	C	A	18	0.167	15	36.000	2.952	3	36.667	3.512	15	3	DYNC1H1	intronic	NA
MB_Group4_T1--5	chr14:102442287	C	A	103	0.097	93	37.505	3.955	10	36.500	2.877	88	10	DYNC1H1	intronic	NA
MB_Group4_T1--6	chr14:102442287	C	A	29	0.103	26	36.000	4.109	3	36.333	1.155	25	3	DYNC1H1	intronic	NA
MB_Group4_T1--GL	chr14:102442287	C	NA	86	0	86	37.267	4.726	0	0	0	85	0	DYNC1H1	intronic	NA
MB_Group4_T1--1	chr14:102442298	A	G	28	0.143	24	33.792	8.758	4	37.000	0.000	20	4	DYNC1H1	intronic	NA
MB_Group4_T1--2	chr14:102442298	A	G	19	0.211	15	37.000	3.185	4	28.250	12.997	14	3	DYNC1H1	intronic	NA
MB_Group4_T1--3	chr14:102442298	A	G	90	0.122	79	35.975	4.859	11	36.000	3.435	73	10	DYNC1H1	intronic	NA
MB_Group4_T1--4	chr14:102442298	A	G	15	0.200	12	34.667	5.449	3	35.667	1.155	11	3	DYNC1H1	intronic	NA
MB_Group4_T1--5	chr14:102442298	A	G	91	0.231	70	35.371	5.286	21	36.762	0.768	62	21	DYNC1H1	intronic	NA
MB_Group4_T1--6	chr14:102442298	A	G	24	0.042	23	33.870	5.012	1	37.000	0.000	20	1	DYNC1H1	intronic	NA
MB_Group4_T1--GL	chr14:102442298	A	NA	81	0	81	34.951	3.804	0	0	0	75	0	DYNC1H1	intronic	NA
MB_Group4_T1--1	chr14:102451912	T	C	20	0.050	19	36.316	7.056	1	37.000	0.000	17	1	DYNC1H1	intronic	NA
MB_Group4_T1--2	chr14:102451912	T	NA	15	0	15	38.800	3.427	0	0	0	14	0	DYNC1H1	intronic	NA
MB_Group4_T1--3	chr14:102451912	T	C	70	0.086	64	37.547	5.718	6	33.167	8.448	58	5	DYNC1H1	intronic	NA
MB_Group4_T1--4	chr14:102451912	T	C	13	0.077	12	38.417	3.288	1	37.000	0.000	12	1	DYNC1H1	intronic	NA
MB_Group4_T1--5	chr14:102451912	T	C	74	0.270	53	36.075	7.073	20	36.250	2.074	47	19	DYNC1H1	intronic	NA
MB_Group4_T1--6	chr14:102451912	T	NA	15	0	14	36.714	5.180	0	0	0	12	0	DYNC1H1	intronic	NA
MB_Group4_T1--GL	chr14:102451912	T	NA	47	0	47	36.532	5.978	0	0	0	42	0	DYNC1H1	intronic	NA
MB_Group4_T1--1	chr14:102549230	G	A	40	0.275	29	35.793	4.693	11	36.000	3.194	26	10	HSP90AA1	intronic	NA
MB_Group4_T1--2	chr14:102549230	G	A	30	0.133	26	36.654	4.252	4	36.500	1.000	25	4	HSP90AA1	intronic	NA
MB_Group4_T1--3	chr14:102549230	G	A	116	0.017	114	37.526	4.199	2	22.500	20.506	110	1	HSP90AA1	intronic	NA
MB_Group4_T1--4	chr14:102549230	G	A	19	0.158	16	37.062	3.820	3	32.333	4.509	15	2	HSP90AA1	intronic	NA
MB_Group4_T1--5	chr14:102549230	G	A	83	0.169	69	36.275	5.695	14	36.286	0.994	64	14	HSP90AA1	intronic	NA
MB_Group4_T1--6	chr14:102549230	G	A	20	0.150	17	36.824	6.297	3	30.333	11.547	16	2	HSP90AA1	intronic	NA
MB_Group4_T1--GL	chr14:102549230	G	NA	60	0	60	37.150	3.644	0	0	0	59	0	HSP90AA1	intronic	NA
MB_Group4_T1--1	chr14:105242003	G	NA	22	0	22	37.273	3.807	0	0	0	22	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:105242003	G	NA	18	0	18	37.500	2.662	0	0	0	18	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:105242003	G	NA	122	0	122	35.156	4.280	0	0	0	114	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:105242003	G	C	17	0.176	14	35.857	3.348	3	36.333	4.163	14	3	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:105242003	G	NA	103	0	103	36.282	5.161	0	0	0	99	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:105242003	G	NA	19	0	19	34.947	8.038	0	0	0	17	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:105242003	G	NA	43	0	43	36.674	3.455	0	0	0	42	0	AKT1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:21829469	G	T	45	0.333	30	37.067	8.737	15	29.333	9.897	28	12	SUPT16H	intronic	NA
MB_Group4_T1--2	chr14:21829469	G	T	34	0.176	28	37.357	7.809	6	29.167	6.765	26	4	SUPT16H	intronic	NA
MB_Group4_T1--3	chr14:21829469	G	T	55	0.345	35	36.257	8.093	19	32.368	5.489	31	17	SUPT16H	intronic	NA
MB_Group4_T1--4	chr14:21829469	G	NA	30	0	16	38.625	2.918	0	0	0	16	0	SUPT16H	intronic	NA
MB_Group4_T1--5	chr14:21829469	G	T	25	0.640	9	37.556	4.851	16	31.562	7.303	8	14	SUPT16H	intronic	NA
MB_Group4_T1--6	chr14:21829469	G	T	18	0.278	13	32.923	11.786	5	30.800	6.261	11	4	SUPT16H	intronic	NA
MB_Group4_T1--GL	chr14:21829469	G	NA	51	0	50	33.600	11.279	0	0	0	42	0	SUPT16H	intronic	NA
MB_Group4_T1--1	chr14:24612394	T	C	34	0.029	33	37.000	4.123	1	37.000	0.000	30	1	MIR7703,PSME2	downstream	NA
MB_Group4_T1--2	chr14:24612394	T	C	30	0.267	22	38.818	2.322	8	36.875	1.553	22	8	MIR7703,PSME2	downstream	NA
MB_Group4_T1--3	chr14:24612394	T	C	78	0.103	70	37.700	3.495	8	30.250	10.700	68	5	MIR7703,PSME2	downstream	NA
MB_Group4_T1--4	chr14:24612394	T	C	11	0.273	8	37.875	2.642	3	36.333	1.155	8	3	MIR7703,PSME2	downstream	NA
MB_Group4_T1--5	chr14:24612394	T	C	117	0.205	93	37.613	3.159	24	36.417	3.049	91	23	MIR7703,PSME2	downstream	NA
MB_Group4_T1--6	chr14:24612394	T	C	10	0.200	8	37.875	4.224	2	33.500	4.950	7	2	MIR7703,PSME2	downstream	NA
MB_Group4_T1--GL	chr14:24612394	T	NA	45	0	45	37.000	3.649	0	0	0	43	0	MIR7703,PSME2	downstream	NA
MB_Group4_T1--1	chr14:24614409	G	A	52	0.154	44	36.955	4.414	8	37.000	0.926	42	8	PSME2	intronic	NA
MB_Group4_T1--2	chr14:24614409	G	A	63	0.111	56	36.946	4.796	7	35.000	4.796	51	6	PSME2	intronic	NA
MB_Group4_T1--3	chr14:24614409	G	A	201	0.040	193	37.461	3.676	8	33.875	6.917	184	7	PSME2	intronic	NA
MB_Group4_T1--4	chr14:24614409	G	A	26	0.077	24	37.750	3.096	2	37.000	0.000	24	2	PSME2	intronic	NA
MB_Group4_T1--5	chr14:24614409	G	A	155	0.116	137	37.547	4.464	18	37.167	2.407	132	18	PSME2	intronic	NA
MB_Group4_T1--6	chr14:24614409	G	NA	24	0	24	38.375	2.584	0	0	0	24	0	PSME2	intronic	NA
MB_Group4_T1--GL	chr14:24614409	G	NA	81	0	81	37.778	3.305	0	0	0	79	0	PSME2	intronic	NA
MB_Group4_T1--1	chr14:24654462	C	A	21	0.190	17	35.471	6.316	4	38.500	3.786	16	4	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:24654462	C	NA	31	0	31	35.194	5.787	0	0	0	26	0	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:24654462	C	NA	169	0	169	36.722	5.495	0	0	0	153	0	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:24654462	C	NA	23	0	23	37.826	4.075	0	0	0	22	0	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:24654462	C	A	121	0.008	118	37.008	4.419	1	37.000	0.000	115	1	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:24654462	C	NA	23	0	23	36.783	5.736	0	0	0	21	0	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:24654462	C	NA	76	0	76	36.026	4.945	0	0	0	72	0	IPO4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:24911636	C	G	38	0.500	19	36.368	2.967	19	35.105	3.900	19	17	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--2	chr14:24911636	C	G	23	0.217	18	36.167	4.062	5	33.600	8.905	16	4	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--3	chr14:24911636	C	G	122	0.459	66	35.803	3.474	56	34.571	4.027	63	51	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--4	chr14:24911636	C	NA	13	0	13	32.846	6.706	0	0	0	10	0	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--5	chr14:24911636	C	G	60	0.367	38	33.500	5.816	22	34.955	7.267	34	18	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--6	chr14:24911636	C	G	17	0.118	15	35.067	2.789	2	34.000	0.000	15	2	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr14:24911636	C	NA	74	0	74	35.905	3.872	0	0	0	71	0	SDR39U1	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:42620324	C	NA	24	0	24	35.417	5.364	0	0	0	22	0	GUCA2B	intronic	NA
MB_Group4_T1--2	chr1:42620324	C	NA	24	0	24	35.458	3.270	0	0	0	22	0	GUCA2B	intronic	NA
MB_Group4_T1--3	chr1:42620324	C	NA	142	0	142	37.338	4.289	0	0	0	137	0	GUCA2B	intronic	NA
MB_Group4_T1--4	chr1:42620324	C	A	14	0.214	11	38.364	2.501	3	38.000	3.000	11	3	GUCA2B	intronic	NA
MB_Group4_T1--5	chr1:42620324	C	NA	69	0	69	37.420	3.500	0	0	0	68	0	GUCA2B	intronic	NA
MB_Group4_T1--6	chr1:42620324	C	NA	16	0	16	37.688	3.092	0	0	0	16	0	GUCA2B	intronic	NA
MB_Group4_T1--GL	chr1:42620324	C	NA	67	0	67	37.299	3.148	0	0	0	67	0	GUCA2B	intronic	NA
MB_Group4_T1--1	chr14:31581877	A	G	27	0.148	22	34.636	5.359	4	37.000	0.000	18	4	HECTD1	intronic	NA
MB_Group4_T1--2	chr14:31581877	A	G	21	0.190	17	36.000	2.622	4	35.750	2.500	17	4	HECTD1	intronic	NA
MB_Group4_T1--3	chr14:31581877	A	G	75	0.213	59	34.034	6.576	16	35.312	4.701	51	15	HECTD1	intronic	NA
MB_Group4_T1--4	chr14:31581877	A	G	14	0.214	11	29.364	9.688	3	33.667	4.163	8	2	HECTD1	intronic	NA
MB_Group4_T1--5	chr14:31581877	A	G	61	0.328	39	32.128	6.634	20	36.800	0.894	29	20	HECTD1	intronic	NA
MB_Group4_T1--6	chr14:31581877	A	G	15	0.133	13	34.231	7.617	2	37.000	0.000	12	2	HECTD1	intronic	NA
MB_Group4_T1--GL	chr14:31581877	A	NA	70	0	70	34.000	5.611	0	0	0	64	0	HECTD1	intronic	NA
MB_Group4_T1--1	chr14:31581878	C	T	27	0.148	22	36.636	3.723	4	36.500	1.000	21	4	HECTD1	intronic	NA
MB_Group4_T1--2	chr14:31581878	C	T	21	0.190	17	36.118	3.706	4	35.500	1.915	16	4	HECTD1	intronic	NA
MB_Group4_T1--3	chr14:31581878	C	T	76	0.184	62	36.081	4.106	14	32.714	8.633	59	12	HECTD1	intronic	NA
MB_Group4_T1--4	chr14:31581878	C	T	14	0.214	11	33.273	5.350	3	33.333	4.726	9	2	HECTD1	intronic	NA
MB_Group4_T1--5	chr14:31581878	C	T	62	0.355	40	33.450	7.558	22	36.364	1.329	35	22	HECTD1	intronic	NA
MB_Group4_T1--6	chr14:31581878	C	T	15	0.133	13	34.385	8.481	2	37.000	0.000	11	2	HECTD1	intronic	NA
MB_Group4_T1--GL	chr14:31581878	C	NA	69	0	69	35.217	5.269	0	0	0	64	0	HECTD1	intronic	NA
MB_Group4_T1--1	chr14:31604566	T	NA	12	0	12	36.083	3.872	0	0	0	11	0	HECTD1	intronic	NA
MB_Group4_T1--2	chr14:31604566	T	C	16	0.188	13	35.692	5.138	3	38.000	3.000	11	3	HECTD1	intronic	NA
MB_Group4_T1--3	chr14:31604566	T	NA	32	0	32	35.031	7.554	0	0	0	30	0	HECTD1	intronic	NA
MB_Group4_T1--4	chr14:31604566	T	NA	13	0	12	37.083	2.937	0	0	0	12	0	HECTD1	intronic	NA
MB_Group4_T1--5	chr14:31604566	T	NA	15	0	15	37.067	3.150	0	0	0	14	0	HECTD1	intronic	NA
MB_Group4_T1--6	chr14:31604566	T	NA	10	0	10	37.400	3.273	0	0	0	10	0	HECTD1	intronic	NA
MB_Group4_T1--GL	chr14:31604566	T	NA	39	0	39	34.795	6.342	0	0	0	34	0	HECTD1	intronic	NA
MB_Group4_T1--1	chr14:37194634	T	C	28	0.179	23	36.000	4.908	5	35.600	3.435	20	5	SLC25A21	intronic	NA
MB_Group4_T1--2	chr14:37194634	T	NA	22	0	22	37.545	3.363	0	0	0	21	0	SLC25A21	intronic	NA
MB_Group4_T1--3	chr14:37194634	T	C	34	0.059	32	37.594	2.769	2	23.500	19.092	32	1	SLC25A21	intronic	NA
MB_Group4_T1--4	chr14:37194634	T	C	16	0.062	15	35.933	4.743	1	37.000	0.000	14	1	SLC25A21	intronic	NA
MB_Group4_T1--5	chr14:37194634	T	C	25	0.080	22	36.636	3.513	2	38.000	1.414	21	2	SLC25A21	intronic	NA
MB_Group4_T1--6	chr14:37194634	T	C	14	0.071	13	37.385	2.987	1	34.000	0.000	13	1	SLC25A21	intronic	NA
MB_Group4_T1--GL	chr14:37194634	T	NA	44	0	44	36.114	4.116	0	0	0	41	0	SLC25A21	intronic	NA
MB_Group4_T1--1	chr1:43912746	C	A	58	0.017	57	36.579	3.625	1	37.000	0.000	55	1	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:43912746	C	NA	40	0	40	35.950	4.534	0	0	0	37	0	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:43912746	C	NA	165	0	165	35.824	4.783	0	0	0	154	0	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:43912746	C	A	25	0.160	21	36.714	3.757	4	36.250	3.202	20	4	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:43912746	C	NA	89	0	89	34.787	4.790	0	0	0	80	0	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:43912746	C	NA	18	0	18	34.722	4.625	0	0	0	17	0	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:43912746	C	NA	91	0	91	35.934	3.938	0	0	0	86	0	SZT2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:39817046	A	NA	23	0	23	37.130	6.656	0	0	0	22	0	CTAGE5	intronic	NA
MB_Group4_T1--2	chr14:39817046	A	NA	13	0	13	37.615	2.959	0	0	0	13	0	CTAGE5	intronic	NA
MB_Group4_T1--3	chr14:39817046	A	NA	38	0	38	37.974	3.183	0	0	0	37	0	CTAGE5	intronic	NA
MB_Group4_T1--4	chr14:39817046	A	NA	13	0	13	38.692	2.780	0	0	0	13	0	CTAGE5	intronic	NA
MB_Group4_T1--5	chr14:39817046	A	T	10	0.100	9	39.333	2.121	1	39.000	0.000	9	1	CTAGE5	intronic	NA
MB_Group4_T1--6	chr14:39817046	A	T	11	0.273	8	38.750	2.765	3	35.333	2.517	8	3	CTAGE5	intronic	NA
MB_Group4_T1--GL	chr14:39817046	A	NA	66	0	66	38.848	2.562	0	0	0	66	0	CTAGE5	intronic	NA
MB_Group4_T1--1	chr14:50655016	A	C	20	0.200	15	35.200	6.247	4	36.500	1.000	13	4	SOS2	intronic	NA
MB_Group4_T1--2	chr14:50655016	A	C	14	0.143	12	37.833	2.480	2	35.000	2.828	12	2	SOS2	intronic	NA
MB_Group4_T1--3	chr14:50655016	A	C	42	0.167	32	37.094	2.441	7	36.000	1.915	32	7	SOS2	intronic	NA
MB_Group4_T1--4	chr14:50655016	A	NA	10	0	10	37.400	3.026	0	0	0	10	0	SOS2	intronic	NA
MB_Group4_T1--5	chr14:50655016	A	C	58	0.345	36	36.667	3.321	20	36.450	2.038	35	19	SOS2	intronic	NA
MB_Group4_T1--6	chr14:50655016	A	C	18	0.278	13	37.231	3.678	5	37.000	0.000	12	5	SOS2	intronic	NA
MB_Group4_T1--GL	chr14:50655016	A	NA	36	0	36	37.222	4.543	0	0	0	34	0	SOS2	intronic	NA
MB_Group4_T1--1	chr14:50655593	C	T	28	0.036	27	34.444	3.816	1	37.000	0.000	25	1	SOS2	intronic	NA
MB_Group4_T1--2	chr14:50655593	C	T	26	0.192	21	35.190	3.750	5	36.400	0.894	19	5	SOS2	intronic	NA
MB_Group4_T1--3	chr14:50655593	C	T	38	0.079	34	36.059	3.472	3	36.667	0.577	32	3	SOS2	intronic	NA
MB_Group4_T1--4	chr14:50655593	C	T	15	0.133	13	36.000	4.397	2	37.000	0.000	11	2	SOS2	intronic	NA
MB_Group4_T1--5	chr14:50655593	C	T	63	0.127	55	35.909	5.133	8	36.500	0.926	53	8	SOS2	intronic	NA
MB_Group4_T1--6	chr14:50655593	C	T	15	0.133	13	35.615	5.606	2	37.000	0.000	12	2	SOS2	intronic	NA
MB_Group4_T1--GL	chr14:50655593	C	NA	36	0	36	37.861	2.997	0	0	0	36	0	SOS2	intronic	NA
MB_Group4_T1--1	chr14:50760895	C	A	40	0.375	25	37.160	4.017	15	36.400	4.256	24	14	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:50760895	C	NA	32	0	32	36.031	2.946	0	0	0	31	0	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:50760895	C	A	92	0.054	87	36.770	3.556	5	38.800	2.588	85	5	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:50760895	C	NA	19	0	19	36.632	2.733	0	0	0	19	0	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:50760895	C	NA	23	0	23	37.000	3.849	0	0	0	22	0	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:50760895	C	NA	27	0	27	37.222	3.130	0	0	0	27	0	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:50760895	C	NA	108	0	108	36.843	3.550	0	0	0	106	0	L2HGDH	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:51372333	A	NA	17	0	17	35.824	7.659	0	0	0	16	0	PYGL	intronic	NA
MB_Group4_T1--2	chr14:51372333	A	NA	13	0	13	36.923	4.192	0	0	0	12	0	PYGL	intronic	NA
MB_Group4_T1--3	chr14:51372333	A	NA	55	0	55	37.818	4.873	0	0	0	53	0	PYGL	intronic	NA
MB_Group4_T1--4	chr14:51372333	A	NA	12	0	12	37.417	3.232	0	0	0	12	0	PYGL	intronic	NA
MB_Group4_T1--5	chr14:51372333	A	G	12	0.250	9	38.333	3.606	3	39.333	2.887	9	3	PYGL	intronic	NA
MB_Group4_T1--6	chr14:51372333	A	NA	18	0	18	38.556	3.091	0	0	0	18	0	PYGL	intronic	NA
MB_Group4_T1--GL	chr14:51372333	A	NA	39	0	39	37.872	3.396	0	0	0	38	0	PYGL	intronic	NA
MB_Group4_T1--1	chr14:52230680	C	A	36	0.167	30	37.333	3.387	6	35.333	2.066	29	6	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--2	chr14:52230680	C	A	31	0.129	27	37.630	4.059	4	37.000	0.000	26	4	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--3	chr14:52230680	C	A	90	0.044	86	37.291	4.138	4	37.000	1.633	84	4	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--4	chr14:52230680	C	A	20	0.150	17	37.941	3.544	3	37.000	0.000	17	3	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--5	chr14:52230680	C	A	41	0.122	36	35.861	5.688	5	37.000	0.000	32	5	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--6	chr14:52230680	C	A	22	0.091	20	36.000	5.758	2	37.000	0.000	18	2	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--GL	chr14:52230680	C	NA	55	0	55	37.164	3.971	0	0	0	53	0	FRMD6(dist=33236),GNG2(dist=96342)	intergenic	NA
MB_Group4_T1--1	chr1:45963137	C	T	14	0.429	8	37.125	2.997	6	37.000	1.265	8	6	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--2	chr1:45963137	C	T	14	0.357	9	38.778	2.489	5	36.600	0.894	9	5	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--3	chr1:45963137	C	T	60	0.033	58	35.983	4.379	2	36.000	1.414	54	2	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--4	chr1:45963137	C	T	10	0.300	7	37.429	2.573	3	37.000	0.000	7	3	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--5	chr1:45963137	C	T	86	0.198	69	36.348	5.664	17	36.882	1.317	63	17	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--6	chr1:45963137	C	T	12	0.167	10	36.900	2.846	2	32.500	6.364	10	1	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--GL	chr1:45963137	C	NA	35	0	35	37.371	3.639	0	0	0	34	0	CCDC163P	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:59793340	C	NA	32	0	32	37.812	2.558	0	0	0	32	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:59793340	C	A	19	0.158	16	36.562	3.032	3	40.000	1.000	16	3	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:59793340	C	NA	82	0	82	37.305	3.848	0	0	0	78	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:59793340	C	NA	28	0	28	36.714	5.112	0	0	0	27	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:59793340	C	NA	42	0	42	36.905	3.161	0	0	0	41	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:59793340	C	NA	34	0	34	36.676	3.382	0	0	0	32	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:59793340	C	NA	66	0	66	36.742	4.737	0	0	0	64	0	DAAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:64554683	T	C	25	0.120	18	37.778	3.001	3	33.000	3.464	18	3	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--2	chr14:64554683	T	C	14	0.071	13	38.769	2.522	1	35.000	0.000	13	1	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--3	chr14:64554683	T	C	74	0.027	71	36.986	4.361	2	36.000	7.071	68	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--4	chr14:64554683	T	NA	20	0	20	36.550	4.273	0	0	0	19	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--5	chr14:64554683	T	C	64	0.188	51	38.725	3.040	12	34.500	3.580	50	11	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--6	chr14:64554683	T	NA	10	0	10	37.800	2.573	0	0	0	10	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--GL	chr14:64554683	T	NA	44	0	44	37.386	3.105	0	0	0	43	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:64554699	A	G	20	0.200	16	36.312	3.554	4	33.000	9.381	15	3	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--2	chr14:64554699	A	G	18	0.056	17	36.588	3.374	1	37.000	0.000	16	1	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--3	chr14:64554699	A	G	71	0.141	61	36.984	3.770	10	37.400	1.838	58	10	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--4	chr14:64554699	A	G	24	0.042	23	36.261	4.403	1	39.000	0.000	22	1	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--5	chr14:64554699	A	G	52	0.250	39	37.564	3.339	13	36.462	3.230	37	12	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--6	chr14:64554699	A	NA	11	0	10	35.600	4.142	0	0	0	9	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--GL	chr14:64554699	A	NA	46	0	46	36.152	3.881	0	0	0	43	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:64554704	A	C	18	0.111	16	38.000	2.449	2	37.000	0.000	16	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--2	chr14:64554704	A	NA	16	0	16	37.312	2.798	0	0	0	16	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--3	chr14:64554704	A	C	66	0.121	58	38.017	2.875	8	35.375	3.292	58	7	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--4	chr14:64554704	A	C	25	0.040	23	37.000	3.303	1	35.000	0.000	22	1	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--5	chr14:64554704	A	C	44	0.250	33	37.970	3.601	11	35.182	2.994	32	10	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--6	chr14:64554704	A	NA	12	0	12	35.667	5.449	0	0	0	11	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--GL	chr14:64554704	A	NA	40	0	40	37.000	3.609	0	0	0	39	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:64554721	T	NA	15	0	15	37.600	2.613	0	0	0	15	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--2	chr14:64554721	T	C	17	0.118	15	38.067	2.865	2	36.000	1.414	15	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--3	chr14:64554721	T	C	53	0.094	48	37.354	4.601	5	29.000	11.113	47	4	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--4	chr14:64554721	T	C	21	0.095	19	36.632	3.961	2	35.500	2.121	18	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--5	chr14:64554721	T	C	35	0.229	27	37.852	3.022	8	35.375	1.506	26	8	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--6	chr14:64554721	T	NA	13	0	13	36.385	3.798	0	0	0	12	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--GL	chr14:64554721	T	NA	36	0	36	37.611	3.227	0	0	0	35	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:64554722	G	NA	15	0	15	37.400	2.971	0	0	0	15	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--2	chr14:64554722	G	A	17	0.118	15	37.000	3.703	2	36.000	1.414	14	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--3	chr14:64554722	G	A	53	0.094	48	37.812	3.547	5	35.400	1.673	47	5	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--4	chr14:64554722	G	A	21	0.095	19	35.105	7.695	2	36.000	1.414	17	2	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--5	chr14:64554722	G	A	34	0.235	26	37.462	2.249	8	35.875	1.808	26	8	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--6	chr14:64554722	G	NA	13	0	13	35.615	3.595	0	0	0	12	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--GL	chr14:64554722	G	NA	36	0	36	37.083	4.404	0	0	0	34	0	MIR548AZ	ncRNA_intronic	NA
MB_Group4_T1--1	chr14:65266506	C	NA	36	0	36	34.250	5.906	0	0	0	33	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--2	chr14:65266506	C	NA	38	0	38	34.947	4.242	0	0	0	35	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--3	chr14:65266506	C	NA	187	0	187	35.652	3.802	0	0	0	180	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--4	chr14:65266506	C	NA	36	0	36	35.111	5.681	0	0	0	34	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--5	chr14:65266506	C	NA	67	0	67	34.970	4.170	0	0	0	62	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--6	chr14:65266506	C	A	19	0.211	15	35.067	3.555	4	35.000	0.816	14	4	SPTB	exonic	synonymous_SNV
MB_Group4_T1--GL	chr14:65266506	C	NA	110	0	110	35.427	4.640	0	0	0	103	0	SPTB	exonic	synonymous_SNV
MB_Group4_T1--1	chr1:46737958	G	A	19	0.211	15	39.067	2.017	4	33.000	1.414	15	4	RAD54L	intronic	NA
MB_Group4_T1--2	chr1:46737958	G	A	18	0.222	14	34.643	9.320	4	32.500	1.732	12	4	RAD54L	intronic	NA
MB_Group4_T1--3	chr1:46737958	G	A	92	0.120	80	36.325	6.673	11	34.455	2.423	72	11	RAD54L	intronic	NA
MB_Group4_T1--4	chr1:46737958	G	NA	11	0	11	37.364	3.776	0	0	0	11	0	RAD54L	intronic	NA
MB_Group4_T1--5	chr1:46737958	G	A	96	0.156	80	37.550	5.170	15	34.400	2.384	75	15	RAD54L	intronic	NA
MB_Group4_T1--6	chr1:46737958	G	A	11	0.091	10	34.900	5.607	1	34.000	0.000	8	1	RAD54L	intronic	NA
MB_Group4_T1--GL	chr1:46737958	G	NA	51	0	51	36.510	4.864	0	0	0	47	0	RAD54L	intronic	NA
MB_Group4_T1--1	chr1:46737960	C	T	20	0.200	16	38.750	2.352	4	36.500	1.000	16	4	RAD54L	intronic	NA
MB_Group4_T1--2	chr1:46737960	C	T	18	0.222	14	37.929	2.556	4	36.000	1.155	14	4	RAD54L	intronic	NA
MB_Group4_T1--3	chr1:46737960	C	T	91	0.110	81	38.506	3.225	10	35.700	2.983	79	9	RAD54L	intronic	NA
MB_Group4_T1--4	chr1:46737960	C	NA	11	0	11	37.364	4.610	0	0	0	10	0	RAD54L	intronic	NA
MB_Group4_T1--5	chr1:46737960	C	T	97	0.165	81	38.704	3.693	16	36.000	2.098	80	16	RAD54L	intronic	NA
MB_Group4_T1--6	chr1:46737960	C	T	11	0.091	10	35.700	8.166	1	37.000	0.000	9	1	RAD54L	intronic	NA
MB_Group4_T1--GL	chr1:46737960	C	NA	51	0	51	37.882	3.296	0	0	0	50	0	RAD54L	intronic	NA
MB_Group4_T1--1	chr14:68157113	C	A	23	0.043	22	38.091	3.637	1	37.000	0.000	21	1	RDH11	exonic	synonymous_SNV
MB_Group4_T1--2	chr14:68157113	C	NA	28	0	28	38.000	3.528	0	0	0	27	0	RDH11	exonic	synonymous_SNV
MB_Group4_T1--3	chr14:68157113	C	A	93	0.011	92	38.022	2.998	1	41.000	0.000	92	1	RDH11	exonic	synonymous_SNV
MB_Group4_T1--4	chr14:68157113	C	NA	27	0	27	37.963	3.322	0	0	0	26	0	RDH11	exonic	synonymous_SNV
MB_Group4_T1--5	chr14:68157113	C	NA	34	0	34	38.412	3.183	0	0	0	34	0	RDH11	exonic	synonymous_SNV
MB_Group4_T1--6	chr14:68157113	C	A	20	0.150	15	38.133	3.114	3	39.000	3.464	15	3	RDH11	exonic	synonymous_SNV
MB_Group4_T1--GL	chr14:68157113	C	NA	101	0	101	37.584	4.392	0	0	0	98	0	RDH11	exonic	synonymous_SNV
MB_Group4_T1--1	chr14:74155967	T	C	21	0.095	19	36.474	7.351	2	36.000	1.414	18	2	DNAL1	intronic	NA
MB_Group4_T1--2	chr14:74155967	T	C	21	0.095	19	35.895	3.725	2	34.500	0.707	18	2	DNAL1	intronic	NA
MB_Group4_T1--3	chr14:74155967	T	C	77	0.052	72	36.764	3.570	4	36.250	1.500	68	4	DNAL1	intronic	NA
MB_Group4_T1--4	chr14:74155967	T	C	14	0.143	12	36.083	4.582	2	36.000	1.414	11	2	DNAL1	intronic	NA
MB_Group4_T1--5	chr14:74155967	T	C	82	0.171	68	36.456	3.900	14	36.500	1.787	67	14	DNAL1	intronic	NA
MB_Group4_T1--6	chr14:74155967	T	C	17	0.059	16	38.188	2.949	1	35.000	0.000	16	1	DNAL1	intronic	NA
MB_Group4_T1--GL	chr14:74155967	T	NA	41	0	41	37.488	3.385	0	0	0	40	0	DNAL1	intronic	NA
MB_Group4_T1--1	chr14:75504868	T	C	17	0.235	13	35.154	5.097	4	36.500	1.000	10	4	MLH3	intronic	NA
MB_Group4_T1--2	chr14:75504868	T	C	16	0.250	12	35.083	7.192	4	29.250	12.868	10	3	MLH3	intronic	NA
MB_Group4_T1--3	chr14:75504868	T	NA	54	0	54	35.241	5.579	0	0	0	49	0	MLH3	intronic	NA
MB_Group4_T1--4	chr14:75504868	T	C	13	0.154	11	32.727	6.930	2	35.000	2.828	8	2	MLH3	intronic	NA
MB_Group4_T1--5	chr14:75504868	T	C	33	0.061	31	35.645	3.929	2	37.000	0.000	29	2	MLH3	intronic	NA
MB_Group4_T1--6	chr14:75504868	T	NA	13	0	13	32.615	8.016	0	0	0	11	0	MLH3	intronic	NA
MB_Group4_T1--GL	chr14:75504868	T	NA	45	0	45	36.289	3.402	0	0	0	43	0	MLH3	intronic	NA
MB_Group4_T1--1	chr14:77492813	C	NA	14	0	14	36.500	5.748	0	0	0	13	0	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:77492813	C	NA	16	0	16	36.438	3.054	0	0	0	16	0	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:77492813	C	NA	81	0	81	37.222	3.244	0	0	0	80	0	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:77492813	C	A	18	0.056	17	34.529	3.810	1	39.000	0.000	16	1	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:77492813	C	NA	87	0	87	36.609	5.118	0	0	0	82	0	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:77492813	C	A	18	0.167	15	37.000	2.726	3	37.667	3.215	15	3	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:77492813	C	NA	39	0	39	36.949	3.236	0	0	0	38	0	IRF2BPL	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:78235840	G	A	18	0.111	16	35.812	3.468	2	37.000	0.000	15	2	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:78235840	G	NA	20	0	20	36.750	3.338	0	0	0	20	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:78235840	G	A	82	0.012	80	37.663	3.515	1	37.000	0.000	78	1	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:78235840	G	A	28	0.071	26	36.000	3.622	2	36.000	1.414	25	2	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:78235840	G	A	27	0.185	22	37.227	3.380	5	36.200	1.095	21	5	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:78235840	G	NA	12	0	12	37.750	2.454	0	0	0	12	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:78235840	G	NA	77	0	77	36.636	4.045	0	0	0	73	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:78235841	C	G	18	0.111	16	36.125	3.931	2	37.000	0.000	15	2	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr14:78235841	C	NA	21	0	21	36.714	3.243	0	0	0	20	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr14:78235841	C	G	83	0.012	82	37.476	4.680	1	37.000	0.000	80	1	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr14:78235841	C	G	28	0.071	26	36.500	2.437	2	34.000	4.243	26	2	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr14:78235841	C	G	28	0.179	23	36.826	2.823	5	36.000	1.414	23	5	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr14:78235841	C	NA	13	0	13	37.154	4.140	0	0	0	12	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr14:78235841	C	NA	79	0	79	37.063	3.871	0	0	0	78	0	C14orf178	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr14:81609205	T	NA	20	0	20	37.700	3.771	0	0	0	19	0	TSHR	intronic	NA
MB_Group4_T1--2	chr14:81609205	T	C	18	0.222	14	37.929	2.200	4	36.500	1.000	14	4	TSHR	intronic	NA
MB_Group4_T1--3	chr14:81609205	T	NA	85	0	85	37.082	4.147	0	0	0	80	0	TSHR	intronic	NA
MB_Group4_T1--4	chr14:81609205	T	NA	26	0	26	39.385	2.155	0	0	0	26	0	TSHR	intronic	NA
MB_Group4_T1--5	chr14:81609205	T	C	45	0.044	43	38.721	2.557	2	36.000	1.414	43	2	TSHR	intronic	NA
MB_Group4_T1--6	chr14:81609205	T	C	17	0.059	16	38.500	3.098	1	37.000	0.000	16	1	TSHR	intronic	NA
MB_Group4_T1--GL	chr14:81609205	T	NA	64	0	64	38.047	3.359	0	0	0	62	0	TSHR	intronic	NA
MB_Group4_T1--1	chr14:89044179	C	T	29	0.207	23	35.826	5.441	6	36.667	0.816	20	6	ZC3H14	intronic	NA
MB_Group4_T1--2	chr14:89044179	C	T	32	0.250	23	36.783	3.541	8	35.500	2.070	23	8	ZC3H14	intronic	NA
MB_Group4_T1--3	chr14:89044179	C	T	48	0.083	44	37.841	3.464	4	32.250	9.500	41	3	ZC3H14	intronic	NA
MB_Group4_T1--4	chr14:89044179	C	T	27	0.185	22	37.045	3.000	5	35.800	1.095	22	5	ZC3H14	intronic	NA
MB_Group4_T1--5	chr14:89044179	C	T	62	0.161	51	37.569	3.574	10	35.100	1.663	49	10	ZC3H14	intronic	NA
MB_Group4_T1--6	chr14:89044179	C	T	25	0.200	20	37.600	2.798	5	36.200	1.095	20	5	ZC3H14	intronic	NA
MB_Group4_T1--GL	chr14:89044179	C	NA	36	0	36	35.583	5.608	0	0	0	33	0	ZC3H14	intronic	NA
MB_Group4_T1--1	chr14:89044182	A	G	31	0.290	22	35.818	7.385	9	36.444	1.130	20	9	ZC3H14	intronic	NA
MB_Group4_T1--2	chr14:89044182	A	G	32	0.281	22	38.045	3.387	9	35.778	3.667	22	8	ZC3H14	intronic	NA
MB_Group4_T1--3	chr14:89044182	A	G	47	0.064	44	37.341	5.309	3	37.000	0.000	41	3	ZC3H14	intronic	NA
MB_Group4_T1--4	chr14:89044182	A	G	27	0.222	21	37.000	4.336	6	35.500	2.811	20	6	ZC3H14	intronic	NA
MB_Group4_T1--5	chr14:89044182	A	G	62	0.194	50	37.940	3.020	12	34.583	7.763	49	11	ZC3H14	intronic	NA
MB_Group4_T1--6	chr14:89044182	A	G	25	0.240	19	38.000	2.906	6	36.333	1.033	19	6	ZC3H14	intronic	NA
MB_Group4_T1--GL	chr14:89044182	A	NA	37	0	37	36.000	4.761	0	0	0	34	0	ZC3H14	intronic	NA
MB_Group4_T1--1	chr14:89088266	C	NA	36	0	36	37.556	2.813	0	0	0	36	0	EML5	intronic	NA
MB_Group4_T1--2	chr14:89088266	C	NA	37	0	37	38.216	2.790	0	0	0	37	0	EML5	intronic	NA
MB_Group4_T1--3	chr14:89088266	C	NA	65	0	65	37.892	3.610	0	0	0	63	0	EML5	intronic	NA
MB_Group4_T1--4	chr14:89088266	C	NA	29	0	29	37.552	4.778	0	0	0	27	0	EML5	intronic	NA
MB_Group4_T1--5	chr14:89088266	C	T	26	0.154	21	37.476	2.657	4	38.000	2.449	21	4	EML5	intronic	NA
MB_Group4_T1--6	chr14:89088266	C	T	31	0.032	30	37.033	3.135	1	41.000	0.000	30	1	EML5	intronic	NA
MB_Group4_T1--GL	chr14:89088266	C	NA	57	0	57	37.877	3.163	0	0	0	56	0	EML5	intronic	NA
MB_Group4_T1--1	chr14:90738499	G	A	22	0.136	19	37.632	3.270	3	37.000	0.000	18	3	PSMC1	intronic	NA
MB_Group4_T1--2	chr14:90738499	G	A	21	0.238	16	38.375	2.604	5	36.600	0.894	16	5	PSMC1	intronic	NA
MB_Group4_T1--3	chr14:90738499	G	A	75	0.027	73	37.671	4.552	2	37.000	0.000	68	2	PSMC1	intronic	NA
MB_Group4_T1--4	chr14:90738499	G	NA	11	0	11	35.545	6.502	0	0	0	10	0	PSMC1	intronic	NA
MB_Group4_T1--5	chr14:90738499	G	A	52	0.212	41	37.195	4.479	11	36.091	1.044	38	11	PSMC1	intronic	NA
MB_Group4_T1--6	chr14:90738499	G	A	16	0.062	15	37.533	2.774	1	37.000	0.000	15	1	PSMC1	intronic	NA
MB_Group4_T1--GL	chr14:90738499	G	NA	54	0	54	37.778	3.202	0	0	0	53	0	PSMC1	intronic	NA
MB_Group4_T1--1	chr14:90738517	T	C	40	0.175	33	33.242	4.108	7	36.857	1.864	26	7	PSMC1	intronic	NA
MB_Group4_T1--2	chr14:90738517	T	C	26	0.038	25	31.600	8.357	1	41.000	0.000	17	1	PSMC1	intronic	NA
MB_Group4_T1--3	chr14:90738517	T	C	109	0.009	108	33.000	5.773	1	41.000	0.000	91	1	PSMC1	intronic	NA
MB_Group4_T1--4	chr14:90738517	T	C	25	0.200	19	32.053	5.662	5	33.800	4.817	15	4	PSMC1	intronic	NA
MB_Group4_T1--5	chr14:90738517	T	C	65	0.062	61	32.656	6.486	4	37.500	1.000	46	4	PSMC1	intronic	NA
MB_Group4_T1--6	chr14:90738517	T	C	30	0.133	26	31.885	6.719	4	35.000	6.683	19	3	PSMC1	intronic	NA
MB_Group4_T1--GL	chr14:90738517	T	NA	89	0	88	33.307	5.064	0	0	0	75	0	PSMC1	intronic	NA
MB_Group4_T1--1	chr14:90745504	C	NA	21	0	21	35.095	6.395	0	0	0	18	0	NRDE2	intronic	NA
MB_Group4_T1--2	chr14:90745504	C	NA	17	0	17	36.412	3.954	0	0	0	16	0	NRDE2	intronic	NA
MB_Group4_T1--3	chr14:90745504	C	NA	103	0	103	36.641	4.535	0	0	0	100	0	NRDE2	intronic	NA
MB_Group4_T1--4	chr14:90745504	C	A	10	0.300	7	36.286	1.704	3	37.333	3.215	7	3	NRDE2	intronic	NA
MB_Group4_T1--5	chr14:90745504	C	NA	43	0	43	36.512	5.320	0	0	0	42	0	NRDE2	intronic	NA
MB_Group4_T1--6	chr14:90745504	C	NA	15	0	15	36.667	2.968	0	0	0	15	0	NRDE2	intronic	NA
MB_Group4_T1--GL	chr14:90745504	C	NA	68	0	68	36.132	3.359	0	0	0	65	0	NRDE2	intronic	NA
MB_Group4_T1--1	chr14:92481894	T	NA	15	0	14	37.571	2.503	0	0	0	14	0	TRIP11	intronic	NA
MB_Group4_T1--2	chr14:92481894	T	C	10	0.100	9	36.667	2.784	1	37.000	0.000	9	1	TRIP11	intronic	NA
MB_Group4_T1--3	chr14:92481894	T	C	25	0.120	22	36.318	3.945	3	35.667	1.155	20	3	TRIP11	intronic	NA
MB_Group4_T1--4	chr14:92481894	T	NA	21	0	21	36.524	4.457	0	0	0	19	0	TRIP11	intronic	NA
MB_Group4_T1--5	chr14:92481894	T	C	38	0.158	31	36.742	3.141	6	36.000	1.673	30	6	TRIP11	intronic	NA
MB_Group4_T1--6	chr14:92481894	T	NA	12	0	12	35.750	5.786	0	0	0	11	0	TRIP11	intronic	NA
MB_Group4_T1--GL	chr14:92481894	T	NA	37	0	37	37.514	3.556	0	0	0	37	0	TRIP11	intronic	NA
MB_Group4_T1--1	chr14:92481895	G	A	15	0.067	14	36.643	3.201	1	35.000	0.000	13	1	TRIP11	intronic	NA
MB_Group4_T1--2	chr14:92481895	G	A	10	0.100	9	35.556	4.362	1	37.000	0.000	8	1	TRIP11	intronic	NA
MB_Group4_T1--3	chr14:92481895	G	A	25	0.120	22	35.864	5.167	3	35.667	1.155	21	3	TRIP11	intronic	NA
MB_Group4_T1--4	chr14:92481895	G	NA	21	0	21	36.667	3.706	0	0	0	20	0	TRIP11	intronic	NA
MB_Group4_T1--5	chr14:92481895	G	A	38	0.184	31	36.548	3.802	7	33.429	6.630	29	6	TRIP11	intronic	NA
MB_Group4_T1--6	chr14:92481895	G	NA	11	0	11	37.182	3.341	0	0	0	11	0	TRIP11	intronic	NA
MB_Group4_T1--GL	chr14:92481895	G	NA	37	0	37	36.919	4.474	0	0	0	34	0	TRIP11	intronic	NA
MB_Group4_T1--1	chr14:92547099	C	NA	14	0	14	36.857	3.840	0	0	0	14	0	ATXN3	intronic	NA
MB_Group4_T1--2	chr14:92547099	C	NA	11	0	11	39.364	2.203	0	0	0	11	0	ATXN3	intronic	NA
MB_Group4_T1--3	chr14:92547099	C	T	38	0.026	37	36.378	5.068	1	37.000	0.000	35	1	ATXN3	intronic	NA
MB_Group4_T1--4	chr14:92547099	C	NA	20	0	20	36.900	2.808	0	0	0	20	0	ATXN3	intronic	NA
MB_Group4_T1--5	chr14:92547099	C	T	40	0.150	34	37.235	2.697	6	36.833	0.408	34	6	ATXN3	intronic	NA
MB_Group4_T1--6	chr14:92547099	C	NA	12	0	12	36.833	2.855	0	0	0	12	0	ATXN3	intronic	NA
MB_Group4_T1--GL	chr14:92547099	C	NA	39	0	39	37.590	3.992	0	0	0	37	0	ATXN3	intronic	NA
MB_Group4_T1--1	chr14:94420712	G	NA	15	0	15	35.867	7.539	0	0	0	14	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--2	chr14:94420712	G	NA	20	0	20	34.950	4.489	0	0	0	18	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--3	chr14:94420712	G	NA	70	0	70	35.471	4.092	0	0	0	66	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--4	chr14:94420712	G	A	11	0.273	8	36.000	2.330	3	35.000	0.000	8	3	ASB2	exonic	synonymous_SNV
MB_Group4_T1--5	chr14:94420712	G	NA	43	0	43	34.837	3.677	0	0	0	41	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--6	chr14:94420712	G	NA	12	0	12	35.250	4.351	0	0	0	11	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr14:94420712	G	NA	40	0	40	34.750	4.471	0	0	0	37	0	ASB2	exonic	synonymous_SNV
MB_Group4_T1--1	chr15:22962120	A	NA	12	0	12	36.417	4.122	0	0	0	11	0	CYFIP1	intronic	NA
MB_Group4_T1--2	chr15:22962120	A	G	23	0.217	18	36.778	5.537	5	37.400	2.608	17	5	CYFIP1	intronic	NA
MB_Group4_T1--3	chr15:22962120	A	NA	68	0	68	36.221	5.807	0	0	0	61	0	CYFIP1	intronic	NA
MB_Group4_T1--4	chr15:22962120	A	NA	10	0	10	35.700	2.214	0	0	0	10	0	CYFIP1	intronic	NA
MB_Group4_T1--5	chr15:22962120	A	NA	54	0	54	36.907	4.954	0	0	0	50	0	CYFIP1	intronic	NA
MB_Group4_T1--6	chr15:22962120	A	NA	12	0	12	35.833	5.491	0	0	0	10	0	CYFIP1	intronic	NA
MB_Group4_T1--GL	chr15:22962120	A	NA	54	0	54	38.093	4.927	0	0	0	52	0	CYFIP1	intronic	NA
MB_Group4_T1--1	chr15:23692225	C	NA	21	0	21	37.000	3.286	0	0	0	21	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--2	chr15:23692225	C	NA	22	0	22	34.773	4.947	0	0	0	19	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--3	chr15:23692225	C	NA	85	0	85	35.671	3.249	0	0	0	82	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--4	chr15:23692225	C	NA	20	0	20	36.500	2.800	0	0	0	20	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--5	chr15:23692225	C	NA	37	0	37	35.324	5.056	0	0	0	35	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--6	chr15:23692225	C	A	17	0.176	14	34.429	3.435	3	38.667	3.215	13	3	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--GL	chr15:23692225	C	NA	57	0	57	34.649	4.623	0	0	0	49	0	GOLGA8S(dist=78754),MIR4508(dist=114984)	intergenic	NA
MB_Group4_T1--1	chr1:52848988	G	T	36	0.194	29	35.207	6.603	7	36.429	0.976	25	7	ORC1	intronic	NA
MB_Group4_T1--2	chr1:52848988	G	T	25	0.120	22	36.273	5.091	3	32.000	8.660	20	2	ORC1	intronic	NA
MB_Group4_T1--3	chr1:52848988	G	T	111	0.072	103	36.340	4.371	8	37.000	1.069	96	8	ORC1	intronic	NA
MB_Group4_T1--4	chr1:52848988	G	T	13	0.077	12	34.750	4.634	1	37.000	0.000	11	1	ORC1	intronic	NA
MB_Group4_T1--5	chr1:52848988	G	T	82	0.159	69	36.855	5.157	13	36.462	2.602	64	12	ORC1	intronic	NA
MB_Group4_T1--6	chr1:52848988	G	T	17	0.235	13	36.231	3.767	4	36.500	1.000	12	4	ORC1	intronic	NA
MB_Group4_T1--GL	chr1:52848988	G	NA	49	0	48	36.125	4.620	0	0	0	45	0	ORC1	intronic	NA
MB_Group4_T1--1	chr1:52848992	T	A	42	0.167	34	30.176	7.618	7	38.143	0.900	23	7	ORC1	intronic	NA
MB_Group4_T1--2	chr1:52848992	T	A	34	0.118	30	31.100	6.723	4	35.250	4.113	21	4	ORC1	intronic	NA
MB_Group4_T1--3	chr1:52848992	T	A	132	0.098	118	30.305	6.158	13	38.308	0.855	75	13	ORC1	intronic	NA
MB_Group4_T1--4	chr1:52848992	T	A	16	0.062	15	27.600	8.105	1	39.000	0.000	7	1	ORC1	intronic	NA
MB_Group4_T1--5	chr1:52848992	T	A	96	0.135	82	29.756	7.007	13	35.615	6.384	51	11	ORC1	intronic	NA
MB_Group4_T1--6	chr1:52848992	T	A	21	0.238	16	30.938	7.971	5	37.800	1.789	12	5	ORC1	intronic	NA
MB_Group4_T1--GL	chr1:52848992	T	NA	64	0	64	30.641	6.435	0	0	0	46	0	ORC1	intronic	NA
MB_Group4_T1--1	chr1:53407362	A	G	30	0.100	27	36.074	4.349	3	34.000	5.196	26	2	SCP2	intronic	NA
MB_Group4_T1--2	chr1:53407362	A	G	27	0.037	26	34.769	5.324	1	37.000	0.000	21	1	SCP2	intronic	NA
MB_Group4_T1--3	chr1:53407362	A	G	79	0.051	75	36.133	4.706	4	37.000	0.000	71	4	SCP2	intronic	NA
MB_Group4_T1--4	chr1:53407362	A	G	20	0.150	17	37.824	3.321	3	37.000	0.000	16	3	SCP2	intronic	NA
MB_Group4_T1--5	chr1:53407362	A	G	52	0.135	45	37.289	4.352	7	37.000	0.000	43	7	SCP2	intronic	NA
MB_Group4_T1--6	chr1:53407362	A	NA	14	0	14	35.000	3.038	0	0	0	12	0	SCP2	intronic	NA
MB_Group4_T1--GL	chr1:53407362	A	NA	77	0	77	36.455	5.017	0	0	0	71	0	SCP2	intronic	NA
MB_Group4_T1--1	chr15:34528802	A	C	19	0.263	14	36.500	5.867	5	34.800	2.490	12	5	SLC12A6	intronic	NA
MB_Group4_T1--2	chr15:34528802	A	C	26	0.154	22	36.864	3.454	4	38.500	1.915	22	4	SLC12A6	intronic	NA
MB_Group4_T1--3	chr15:34528802	A	C	52	0.038	49	37.551	5.212	2	37.000	0.000	48	2	SLC12A6	intronic	NA
MB_Group4_T1--4	chr15:34528802	A	C	12	0.083	11	36.364	2.292	1	37.000	0.000	11	1	SLC12A6	intronic	NA
MB_Group4_T1--5	chr15:34528802	A	C	41	0.268	30	37.600	3.654	11	35.182	3.188	29	10	SLC12A6	intronic	NA
MB_Group4_T1--6	chr15:34528802	A	NA	10	0	10	37.200	3.425	0	0	0	10	0	SLC12A6	intronic	NA
MB_Group4_T1--GL	chr15:34528802	A	NA	44	0	44	37.477	3.107	0	0	0	43	0	SLC12A6	intronic	NA
MB_Group4_T1--1	chr15:40500632	A	G	22	0.182	18	36.167	2.640	4	36.500	1.000	18	4	BUB1B	intronic	NA
MB_Group4_T1--2	chr15:40500632	A	G	18	0.167	15	35.600	5.642	3	37.000	0.000	13	3	BUB1B	intronic	NA
MB_Group4_T1--3	chr15:40500632	A	G	49	0.041	47	35.702	5.927	2	37.500	0.707	42	2	BUB1B	intronic	NA
MB_Group4_T1--4	chr15:40500632	A	G	14	0.071	13	35.615	3.150	1	37.000	0.000	12	1	BUB1B	intronic	NA
MB_Group4_T1--5	chr15:40500632	A	G	66	0.182	53	35.566	6.655	12	36.583	0.793	49	12	BUB1B	intronic	NA
MB_Group4_T1--6	chr15:40500632	A	G	17	0.294	12	37.500	2.646	5	36.000	1.414	12	5	BUB1B	intronic	NA
MB_Group4_T1--GL	chr15:40500632	A	NA	34	0	34	37.471	3.586	0	0	0	32	0	BUB1B	intronic	NA
MB_Group4_T1--1	chr15:40500643	A	G	24	0.167	20	36.550	4.548	4	32.250	4.856	17	3	BUB1B	intronic	NA
MB_Group4_T1--2	chr15:40500643	A	G	17	0.059	16	36.938	3.151	1	34.000	0.000	16	1	BUB1B	intronic	NA
MB_Group4_T1--3	chr15:40500643	A	NA	55	0	55	36.309	5.837	0	0	0	53	0	BUB1B	intronic	NA
MB_Group4_T1--4	chr15:40500643	A	NA	13	0	13	35.000	5.538	0	0	0	10	0	BUB1B	intronic	NA
MB_Group4_T1--5	chr15:40500643	A	G	68	0.176	56	35.429	6.333	12	36.583	3.059	48	12	BUB1B	intronic	NA
MB_Group4_T1--6	chr15:40500643	A	NA	16	0	16	36.062	8.614	0	0	0	14	0	BUB1B	intronic	NA
MB_Group4_T1--GL	chr15:40500643	A	NA	36	0	36	36.778	6.165	0	0	0	34	0	BUB1B	intronic	NA
MB_Group4_T1--1	chr15:41011304	A	G	18	0.222	14	37.571	3.275	4	37.000	3.266	13	4	RAD51	intronic	NA
MB_Group4_T1--2	chr15:41011304	A	NA	21	0	21	37.476	2.379	0	0	0	21	0	RAD51	intronic	NA
MB_Group4_T1--3	chr15:41011304	A	G	53	0.019	52	36.462	6.021	1	37.000	0.000	49	1	RAD51	intronic	NA
MB_Group4_T1--4	chr15:41011304	A	NA	11	0	11	35.636	5.714	0	0	0	10	0	RAD51	intronic	NA
MB_Group4_T1--5	chr15:41011304	A	G	70	0.029	68	36.956	4.717	2	37.000	0.000	65	2	RAD51	intronic	NA
MB_Group4_T1--6	chr15:41011304	A	NA	14	0	13	36.846	3.105	0	0	0	13	0	RAD51	intronic	NA
MB_Group4_T1--GL	chr15:41011304	A	NA	37	0	36	37.611	3.073	0	0	0	35	0	RAD51	intronic	NA
MB_Group4_T1--1	chr15:41476733	C	NA	20	0	20	36.200	3.861	0	0	0	19	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr15:41476733	C	A	13	0.231	10	35.200	3.706	3	33.667	6.658	10	2	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr15:41476733	C	NA	74	0	74	37.608	4.413	0	0	0	72	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr15:41476733	C	NA	11	0	11	37.364	3.668	0	0	0	11	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr15:41476733	C	NA	26	0	26	36.269	6.726	0	0	0	22	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr15:41476733	C	NA	19	0	19	37.947	3.582	0	0	0	18	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr15:41476733	C	NA	59	0	59	37.644	4.770	0	0	0	56	0	EXD1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr15:41482429	C	T	21	0.190	17	36.941	7.949	4	37.000	2.828	16	4	EXD1	intronic	NA
MB_Group4_T1--2	chr15:41482429	C	T	34	0.206	27	38.667	2.148	7	37.000	1.155	27	7	EXD1	intronic	NA
MB_Group4_T1--3	chr15:41482429	C	T	105	0.029	102	37.637	5.065	3	36.333	1.155	97	3	EXD1	intronic	NA
MB_Group4_T1--4	chr15:41482429	C	T	23	0.087	21	36.476	5.776	2	35.000	0.000	18	2	EXD1	intronic	NA
MB_Group4_T1--5	chr15:41482429	C	T	73	0.068	68	37.074	5.038	5	37.400	2.191	65	5	EXD1	intronic	NA
MB_Group4_T1--6	chr15:41482429	C	T	13	0.077	12	38.083	3.370	1	37.000	0.000	12	1	EXD1	intronic	NA
MB_Group4_T1--GL	chr15:41482429	C	NA	65	0	65	38.046	3.266	0	0	0	64	0	EXD1	intronic	NA
MB_Group4_T1--1	chr15:43446993	C	NA	17	0	17	37.941	2.839	0	0	0	17	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--2	chr15:43446993	C	A	22	0.182	18	37.778	3.574	4	40.000	2.000	17	4	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--3	chr15:43446993	C	NA	32	0	32	37.875	3.517	0	0	0	31	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--4	chr15:43446993	C	NA	15	0	15	38.800	2.426	0	0	0	15	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--5	chr15:43446993	C	NA	14	0	14	40.286	1.267	0	0	0	14	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--6	chr15:43446993	C	NA	10	0	10	39.400	1.647	0	0	0	10	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--GL	chr15:43446993	C	NA	39	0	39	38.410	2.962	0	0	0	38	0	TMEM62	exonic	stopgain_SNV
MB_Group4_T1--1	chr15:45432288	A	NA	23	0	23	34.870	4.267	0	0	0	20	0	DUOX1	intronic	NA
MB_Group4_T1--2	chr15:45432288	A	NA	32	0	32	35.719	4.010	0	0	0	30	0	DUOX1	intronic	NA
MB_Group4_T1--3	chr15:45432288	A	G	106	0.028	103	35.369	3.946	3	36.333	1.155	96	3	DUOX1	intronic	NA
MB_Group4_T1--4	chr15:45432288	A	NA	16	0	16	34.562	4.618	0	0	0	15	0	DUOX1	intronic	NA
MB_Group4_T1--5	chr15:45432288	A	G	75	0.147	64	35.734	3.479	11	36.636	0.809	61	11	DUOX1	intronic	NA
MB_Group4_T1--6	chr15:45432288	A	NA	17	0	17	33.706	5.709	0	0	0	15	0	DUOX1	intronic	NA
MB_Group4_T1--GL	chr15:45432288	A	NA	62	0	62	36.468	2.702	0	0	0	62	0	DUOX1	intronic	NA
MB_Group4_T1--1	chr15:45432289	C	NA	23	0	23	37.565	2.777	0	0	0	23	0	DUOX1	intronic	NA
MB_Group4_T1--2	chr15:45432289	C	NA	32	0	32	37.219	4.014	0	0	0	31	0	DUOX1	intronic	NA
MB_Group4_T1--3	chr15:45432289	C	T	107	0.028	102	36.667	3.445	3	35.333	2.887	100	3	DUOX1	intronic	NA
MB_Group4_T1--4	chr15:45432289	C	NA	16	0	16	35.438	3.502	0	0	0	15	0	DUOX1	intronic	NA
MB_Group4_T1--5	chr15:45432289	C	T	75	0.147	64	36.844	3.252	11	36.636	0.809	63	11	DUOX1	intronic	NA
MB_Group4_T1--6	chr15:45432289	C	NA	17	0	17	35.412	5.112	0	0	0	15	0	DUOX1	intronic	NA
MB_Group4_T1--GL	chr15:45432289	C	NA	63	0	63	37.381	3.245	0	0	0	62	0	DUOX1	intronic	NA
MB_Group4_T1--1	chr15:45433227	A	G	60	0.117	52	35.962	4.053	7	32.000	7.874	49	5	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--2	chr15:45433227	A	G	53	0.245	40	34.925	5.432	13	36.615	1.261	35	13	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--3	chr15:45433227	A	G	314	0.061	295	35.895	4.386	19	35.579	2.116	283	19	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--4	chr15:45433227	A	G	40	0.175	33	34.182	3.737	7	36.429	0.976	31	7	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--5	chr15:45433227	A	G	200	0.265	147	35.456	4.744	53	36.585	2.299	136	52	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--6	chr15:45433227	A	G	27	0.037	26	34.962	4.340	1	37.000	0.000	25	1	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr15:45433227	A	NA	123	0	123	36.033	4.262	0	0	0	118	0	DUOX1	exonic	synonymous_SNV
MB_Group4_T1--1	chr15:45433228	C	T	60	0.133	52	36.442	3.977	8	34.500	2.828	50	7	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr15:45433228	C	T	52	0.250	39	35.179	6.138	13	35.846	1.625	35	13	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr15:45433228	C	T	315	0.067	294	36.629	3.752	21	33.619	7.081	286	19	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr15:45433228	C	T	40	0.175	33	35.152	4.009	7	33.857	4.140	32	6	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr15:45433228	C	T	201	0.264	148	36.541	3.242	53	35.811	1.991	144	53	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr15:45433228	C	T	27	0.037	26	35.500	2.874	1	37.000	0.000	26	1	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr15:45433228	C	NA	123	0	123	36.878	3.670	0	0	0	121	0	DUOX1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr15:45433276	G	A	61	0.164	50	35.160	5.818	10	36.900	1.524	46	10	DUOX1	intronic	NA
MB_Group4_T1--2	chr15:45433276	G	A	54	0.130	46	35.935	4.896	7	38.143	1.676	42	7	DUOX1	intronic	NA
MB_Group4_T1--3	chr15:45433276	G	A	296	0.041	282	35.702	4.434	12	37.833	1.946	262	12	DUOX1	intronic	NA
MB_Group4_T1--4	chr15:45433276	G	A	38	0.079	35	35.714	4.476	3	36.333	5.033	34	3	DUOX1	intronic	NA
MB_Group4_T1--5	chr15:45433276	G	A	200	0.170	164	35.909	4.469	34	36.676	3.102	150	32	DUOX1	intronic	NA
MB_Group4_T1--6	chr15:45433276	G	A	38	0.158	32	34.656	5.271	6	37.667	1.033	29	6	DUOX1	intronic	NA
MB_Group4_T1--GL	chr15:45433276	G	NA	108	0	107	35.673	4.406	0	0	0	99	0	DUOX1	intronic	NA
MB_Group4_T1--1	chr15:51510868	A	C	40	0.025	39	35.077	5.436	1	36.000	0.000	35	1	CYP19A1	intronic	NA
MB_Group4_T1--2	chr15:51510868	A	NA	31	0	29	35.931	3.741	0	0	0	28	0	CYP19A1	intronic	NA
MB_Group4_T1--3	chr15:51510868	A	NA	50	0	50	34.600	5.573	0	0	0	45	0	CYP19A1	intronic	NA
MB_Group4_T1--4	chr15:51510868	A	NA	37	0	37	35.946	3.511	0	0	0	35	0	CYP19A1	intronic	NA
MB_Group4_T1--5	chr15:51510868	A	C	18	0.167	15	37.133	2.669	3	38.667	1.528	15	3	CYP19A1	intronic	NA
MB_Group4_T1--6	chr15:51510868	A	NA	16	0	16	38.000	2.191	0	0	0	16	0	CYP19A1	intronic	NA
MB_Group4_T1--GL	chr15:51510868	A	NA	122	0	122	36.295	3.106	0	0	0	119	0	CYP19A1	intronic	NA
MB_Group4_T1--1	chr15:55652046	C	NA	21	0	21	37.619	2.617	0	0	0	21	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr15:55652046	C	A	14	0.214	11	37.909	3.646	3	38.667	3.215	10	3	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr15:55652046	C	NA	59	0	59	38.390	2.895	0	0	0	58	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr15:55652046	C	NA	17	0	17	36.353	3.823	0	0	0	17	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr15:55652046	C	NA	14	0	14	39.143	2.316	0	0	0	14	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr15:55652046	C	NA	13	0	13	38.308	2.562	0	0	0	13	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr15:55652046	C	NA	63	0	63	37.746	4.374	0	0	0	59	0	CCPG1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr15:59464308	T	C	27	0.074	25	35.080	3.662	2	34.000	0.000	24	2	MYO1E	intronic	NA
MB_Group4_T1--2	chr15:59464308	T	C	22	0.182	17	33.647	7.945	4	39.000	0.000	14	4	MYO1E	intronic	NA
MB_Group4_T1--3	chr15:59464308	T	C	85	0.024	83	33.795	4.965	2	39.000	0.000	74	2	MYO1E	intronic	NA
MB_Group4_T1--4	chr15:59464308	T	NA	12	0	12	34.083	4.542	0	0	0	11	0	MYO1E	intronic	NA
MB_Group4_T1--5	chr15:59464308	T	C	64	0.125	56	34.036	4.636	8	37.875	1.808	51	8	MYO1E	intronic	NA
MB_Group4_T1--6	chr15:59464308	T	NA	15	0	15	33.000	8.168	0	0	0	12	0	MYO1E	intronic	NA
MB_Group4_T1--GL	chr15:59464308	T	NA	70	0	70	33.557	5.529	0	0	0	61	0	MYO1E	intronic	NA
MB_Group4_T1--1	chr15:59464314	C	G	21	0.048	19	38.684	2.888	1	41.000	0.000	19	1	MYO1E	intronic	NA
MB_Group4_T1--2	chr15:59464314	C	G	20	0.200	15	38.200	4.109	4	35.500	1.732	14	4	MYO1E	intronic	NA
MB_Group4_T1--3	chr15:59464314	C	G	76	0.026	73	37.452	4.059	2	37.000	0.000	72	2	MYO1E	intronic	NA
MB_Group4_T1--4	chr15:59464314	C	NA	10	0	10	38.800	3.120	0	0	0	10	0	MYO1E	intronic	NA
MB_Group4_T1--5	chr15:59464314	C	G	61	0.115	54	37.407	3.606	7	36.286	1.254	51	7	MYO1E	intronic	NA
MB_Group4_T1--6	chr15:59464314	C	G	16	0.062	15	37.800	3.468	1	37.000	0.000	14	1	MYO1E	intronic	NA
MB_Group4_T1--GL	chr15:59464314	C	NA	62	0	62	36.919	5.116	0	0	0	59	0	MYO1E	intronic	NA
MB_Group4_T1--1	chr15:82443855	C	A	16	0.188	13	37.385	2.663	3	38.667	3.215	13	3	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--2	chr15:82443855	C	NA	19	0	19	37.789	3.630	0	0	0	18	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--3	chr15:82443855	C	NA	62	0	62	37.919	3.614	0	0	0	60	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--4	chr15:82443855	C	NA	17	0	17	38.000	4.153	0	0	0	16	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--5	chr15:82443855	C	NA	13	0	13	36.615	3.228	0	0	0	13	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--6	chr15:82443855	C	NA	14	0	14	38.000	3.113	0	0	0	14	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr15:82443855	C	NA	72	0	72	37.653	5.154	0	0	0	70	0	EFTUD1	exonic	synonymous_SNV
MB_Group4_T1--1	chr15:85410490	T	C	36	0.556	16	37.500	3.688	20	36.600	0.995	15	20	ALPK3	intronic	NA
MB_Group4_T1--2	chr15:85410490	T	C	29	0.379	18	37.611	2.747	11	35.000	2.683	18	10	ALPK3	intronic	NA
MB_Group4_T1--3	chr15:85410490	T	C	98	0.337	65	36.292	6.197	33	36.182	1.704	60	33	ALPK3	intronic	NA
MB_Group4_T1--4	chr15:85410490	T	C	23	0.217	18	37.222	4.066	5	36.000	1.414	17	5	ALPK3	intronic	NA
MB_Group4_T1--5	chr15:85410490	T	C	76	0.645	27	36.630	4.970	49	36.286	1.646	24	48	ALPK3	intronic	NA
MB_Group4_T1--6	chr15:85410490	T	C	13	0.385	8	35.750	10.740	5	36.000	2.236	7	5	ALPK3	intronic	NA
MB_Group4_T1--GL	chr15:85410490	T	NA	63	0	63	37.492	3.671	0	0	0	60	0	ALPK3	intronic	NA
MB_Group4_T1--1	chr15:85410491	G	A	36	0.556	16	38.000	2.556	20	36.900	0.447	16	20	ALPK3	intronic	NA
MB_Group4_T1--2	chr15:85410491	G	A	29	0.379	18	38.333	2.473	11	35.091	3.477	18	9	ALPK3	intronic	NA
MB_Group4_T1--3	chr15:85410491	G	A	99	0.323	66	37.061	4.587	32	36.594	1.073	62	32	ALPK3	intronic	NA
MB_Group4_T1--4	chr15:85410491	G	A	23	0.217	18	37.444	3.240	5	36.600	0.894	18	5	ALPK3	intronic	NA
MB_Group4_T1--5	chr15:85410491	G	A	76	0.632	28	37.857	2.902	48	36.688	0.903	28	48	ALPK3	intronic	NA
MB_Group4_T1--6	chr15:85410491	G	A	13	0.385	8	36.750	7.960	5	35.600	3.130	7	5	ALPK3	intronic	NA
MB_Group4_T1--GL	chr15:85410491	G	NA	63	0	63	37.651	4.251	0	0	0	60	0	ALPK3	intronic	NA
MB_Group4_T1--1	chr15:89848214	T	C	19	0.158	16	35.125	2.986	3	36.333	1.155	16	3	FANCI	intronic	NA
MB_Group4_T1--2	chr15:89848214	T	C	23	0.130	20	35.750	3.024	3	36.000	1.732	20	3	FANCI	intronic	NA
MB_Group4_T1--3	chr15:89848214	T	C	168	0.119	148	34.047	5.646	20	34.400	4.684	132	18	FANCI	intronic	NA
MB_Group4_T1--4	chr15:89848214	T	NA	14	0	14	35.143	4.786	0	0	0	13	0	FANCI	intronic	NA
MB_Group4_T1--5	chr15:89848214	T	C	86	0.337	57	35.175	3.978	29	35.724	2.282	54	29	FANCI	intronic	NA
MB_Group4_T1--6	chr15:89848214	T	NA	14	0	14	31.786	4.594	0	0	0	11	0	FANCI	intronic	NA
MB_Group4_T1--GL	chr15:89848214	T	NA	66	0	66	34.333	4.494	0	0	0	65	0	FANCI	intronic	NA
MB_Group4_T1--1	chr15:89848215	G	C	19	0.158	16	36.312	2.626	3	36.333	1.155	16	3	FANCI	intronic	NA
MB_Group4_T1--2	chr15:89848215	G	C	23	0.130	20	36.750	5.428	3	37.000	0.000	19	3	FANCI	intronic	NA
MB_Group4_T1--3	chr15:89848215	G	C	168	0.107	149	35.859	4.647	18	36.556	0.856	138	18	FANCI	intronic	NA
MB_Group4_T1--4	chr15:89848215	G	NA	13	0	13	37.231	3.320	0	0	0	13	0	FANCI	intronic	NA
MB_Group4_T1--5	chr15:89848215	G	C	86	0.337	56	35.536	5.215	29	36.552	2.473	51	28	FANCI	intronic	NA
MB_Group4_T1--6	chr15:89848215	G	NA	14	0	14	35.000	2.801	0	0	0	14	0	FANCI	intronic	NA
MB_Group4_T1--GL	chr15:89848215	G	NA	66	0	66	35.697	3.654	0	0	0	64	0	FANCI	intronic	NA
MB_Group4_T1--1	chr15:99459710	G	NA	14	0	14	36.786	3.068	0	0	0	14	0	IGF1R	intronic	NA
MB_Group4_T1--2	chr15:99459710	G	C	10	0.200	8	35.125	5.083	2	37.000	0.000	7	2	IGF1R	intronic	NA
MB_Group4_T1--3	chr15:99459710	G	NA	68	0	68	35.897	4.027	0	0	0	66	0	IGF1R	intronic	NA
MB_Group4_T1--4	chr15:99459710	G	NA	17	0	16	37.500	2.683	0	0	0	16	0	IGF1R	intronic	NA
MB_Group4_T1--5	chr15:99459710	G	C	51	0.196	38	35.711	4.040	10	36.000	1.414	35	10	IGF1R	intronic	NA
MB_Group4_T1--6	chr15:99459710	G	NA	10	0	10	36.400	3.596	0	0	0	9	0	IGF1R	intronic	NA
MB_Group4_T1--GL	chr15:99459710	G	NA	41	0	41	36.220	4.186	0	0	0	38	0	IGF1R	intronic	NA
MB_Group4_T1--1	chr16:15727446	T	NA	21	0	21	37.571	3.668	0	0	0	20	0	KIAA0430	intronic	NA
MB_Group4_T1--2	chr16:15727446	T	NA	15	0	15	36.733	3.973	0	0	0	14	0	KIAA0430	intronic	NA
MB_Group4_T1--3	chr16:15727446	T	C	69	0.014	67	37.537	4.752	1	41.000	0.000	64	1	KIAA0430	intronic	NA
MB_Group4_T1--4	chr16:15727446	T	NA	13	0	13	39.077	2.139	0	0	0	13	0	KIAA0430	intronic	NA
MB_Group4_T1--5	chr16:15727446	T	C	17	0.059	16	38.812	2.105	1	39.000	0.000	16	1	KIAA0430	intronic	NA
MB_Group4_T1--6	chr16:15727446	T	C	13	0.231	10	36.300	9.105	3	37.333	4.041	9	3	KIAA0430	intronic	NA
MB_Group4_T1--GL	chr16:15727446	T	NA	80	0	80	37.775	3.089	0	0	0	78	0	KIAA0430	intronic	NA
MB_Group4_T1--1	chr16:15760983	G	A	35	0.257	26	36.731	3.293	9	36.556	0.882	25	9	NDE1	intronic	NA
MB_Group4_T1--2	chr16:15760983	G	A	26	0.192	21	36.619	3.248	5	37.000	0.000	21	5	NDE1	intronic	NA
MB_Group4_T1--3	chr16:15760983	G	A	99	0.010	98	35.898	4.841	1	37.000	0.000	92	1	NDE1	intronic	NA
MB_Group4_T1--4	chr16:15760983	G	A	17	0.118	15	35.733	8.119	2	36.000	1.414	14	2	NDE1	intronic	NA
MB_Group4_T1--5	chr16:15760983	G	A	74	0.068	69	37.638	2.770	5	36.200	1.095	69	5	NDE1	intronic	NA
MB_Group4_T1--6	chr16:15760983	G	A	20	0.050	19	37.263	2.491	1	37.000	0.000	19	1	NDE1	intronic	NA
MB_Group4_T1--GL	chr16:15760983	G	NA	62	0	62	36.597	3.365	0	0	0	59	0	NDE1	intronic	NA
MB_Group4_T1--1	chr16:15760987	C	T	35	0.257	26	36.962	4.660	9	38.111	1.054	25	9	NDE1	intronic	NA
MB_Group4_T1--2	chr16:15760987	C	T	25	0.200	20	37.450	2.781	5	38.600	0.894	20	5	NDE1	intronic	NA
MB_Group4_T1--3	chr16:15760987	C	T	98	0.020	95	36.474	5.157	2	37.000	0.000	88	2	NDE1	intronic	NA
MB_Group4_T1--4	chr16:15760987	C	T	18	0.056	17	37.529	2.695	1	37.000	0.000	17	1	NDE1	intronic	NA
MB_Group4_T1--5	chr16:15760987	C	T	74	0.054	70	37.629	3.699	4	37.250	2.062	68	4	NDE1	intronic	NA
MB_Group4_T1--6	chr16:15760987	C	T	21	0.095	19	36.368	5.283	2	34.500	6.364	18	2	NDE1	intronic	NA
MB_Group4_T1--GL	chr16:15760987	C	NA	64	0	63	36.841	5.448	0	0	0	60	0	NDE1	intronic	NA
MB_Group4_T1--1	chr16:16302492	A	G	42	0.143	36	38.278	3.911	6	34.000	1.897	35	6	ABCC6	intronic	NA
MB_Group4_T1--2	chr16:16302492	A	G	48	0.104	42	37.714	4.163	5	32.000	1.871	40	5	ABCC6	intronic	NA
MB_Group4_T1--3	chr16:16302492	A	G	126	0.032	122	38.639	3.469	4	32.500	1.732	120	4	ABCC6	intronic	NA
MB_Group4_T1--4	chr16:16302492	A	G	34	0.265	25	37.400	3.096	9	31.667	3.428	25	7	ABCC6	intronic	NA
MB_Group4_T1--5	chr16:16302492	A	G	154	0.065	143	38.028	3.957	10	34.400	2.221	140	10	ABCC6	intronic	NA
MB_Group4_T1--6	chr16:16302492	A	G	29	0.207	23	37.739	3.768	6	35.000	1.549	23	6	ABCC6	intronic	NA
MB_Group4_T1--GL	chr16:16302492	A	NA	101	0	101	38.525	3.081	0	0	0	99	0	ABCC6	intronic	NA
MB_Group4_T1--1	chr16:16302496	C	T	42	0.119	37	37.703	4.358	5	36.800	0.447	36	5	ABCC6	intronic	NA
MB_Group4_T1--2	chr16:16302496	C	T	49	0.143	41	37.415	4.056	7	35.571	3.457	39	6	ABCC6	intronic	NA
MB_Group4_T1--3	chr16:16302496	C	T	126	0.032	122	37.680	4.513	4	37.000	0.000	119	4	ABCC6	intronic	NA
MB_Group4_T1--4	chr16:16302496	C	T	34	0.235	26	36.154	4.106	8	35.500	3.024	23	8	ABCC6	intronic	NA
MB_Group4_T1--5	chr16:16302496	C	T	156	0.058	146	37.240	4.719	9	37.667	1.000	138	9	ABCC6	intronic	NA
MB_Group4_T1--6	chr16:16302496	C	T	30	0.200	24	37.542	3.526	6	37.333	0.816	23	6	ABCC6	intronic	NA
MB_Group4_T1--GL	chr16:16302496	C	NA	100	0	99	37.869	3.510	0	0	0	94	0	ABCC6	intronic	NA
MB_Group4_T1--1	chr16:2162655	A	NA	19	0	19	35.421	2.854	0	0	0	18	0	PKD1	intronic	NA
MB_Group4_T1--2	chr16:2162655	A	C	20	0.050	19	33.053	6.794	1	40.000	0.000	16	1	PKD1	intronic	NA
MB_Group4_T1--3	chr16:2162655	A	C	132	0.235	100	36.240	4.365	31	35.968	5.701	95	28	PKD1	intronic	NA
MB_Group4_T1--4	chr16:2162655	A	NA	14	0	14	31.857	8.085	0	0	0	10	0	PKD1	intronic	NA
MB_Group4_T1--5	chr16:2162655	A	C	138	0.232	106	35.151	5.772	32	33.500	6.355	96	24	PKD1	intronic	NA
MB_Group4_T1--6	chr16:2162655	A	NA	17	0	17	35.294	3.424	0	0	0	16	0	PKD1	intronic	NA
MB_Group4_T1--GL	chr16:2162655	A	NA	41	0	41	35.195	6.321	0	0	0	36	0	PKD1	intronic	NA
MB_Group4_T1--1	chr16:22092013	A	G	30	0.167	25	37.040	3.565	5	35.000	0.707	24	5	C16orf52	intronic	NA
MB_Group4_T1--2	chr16:22092013	A	NA	19	0	19	38.316	2.286	0	0	0	19	0	C16orf52	intronic	NA
MB_Group4_T1--3	chr16:22092013	A	G	47	0.213	37	36.676	3.440	10	34.600	3.340	36	9	C16orf52	intronic	NA
MB_Group4_T1--4	chr16:22092013	A	NA	17	0	17	37.412	3.589	0	0	0	16	0	C16orf52	intronic	NA
MB_Group4_T1--5	chr16:22092013	A	G	18	0.556	8	29.125	11.218	10	35.500	0.707	5	10	C16orf52	intronic	NA
MB_Group4_T1--6	chr16:22092013	A	NA	11	0	11	35.727	4.429	0	0	0	10	0	C16orf52	intronic	NA
MB_Group4_T1--GL	chr16:22092013	A	NA	59	0	59	36.102	3.994	0	0	0	56	0	C16orf52	intronic	NA
MB_Group4_T1--1	chr16:22092014	C	G	34	0.294	24	37.958	3.029	10	34.300	1.889	24	10	C16orf52	intronic	NA
MB_Group4_T1--2	chr16:22092014	C	G	22	0.136	18	38.500	2.572	3	34.667	1.155	18	3	C16orf52	intronic	NA
MB_Group4_T1--3	chr16:22092014	C	G	57	0.263	42	36.595	3.254	15	35.533	0.990	41	15	C16orf52	intronic	NA
MB_Group4_T1--4	chr16:22092014	C	NA	18	0	18	37.389	2.638	0	0	0	18	0	C16orf52	intronic	NA
MB_Group4_T1--5	chr16:22092014	C	G	28	0.714	8	27.875	11.532	20	34.200	2.093	5	20	C16orf52	intronic	NA
MB_Group4_T1--6	chr16:22092014	C	NA	13	0	13	35.615	3.990	0	0	0	12	0	C16orf52	intronic	NA
MB_Group4_T1--GL	chr16:22092014	C	NA	59	0	59	36.542	3.530	0	0	0	57	0	C16orf52	intronic	NA
MB_Group4_T1--1	chr16:2240139	C	NA	34	0	34	37.382	4.619	0	0	0	31	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:2240139	C	NA	34	0	34	36.647	6.247	0	0	0	32	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:2240139	C	NA	169	0	168	37.196	4.866	0	0	0	162	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:2240139	C	A	17	0.176	14	36.000	4.472	3	37.333	2.887	12	3	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:2240139	C	NA	166	0	166	36.560	5.499	0	0	0	149	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:2240139	C	NA	20	0	20	37.600	3.315	0	0	0	19	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:2240139	C	NA	45	0	45	36.756	4.593	0	0	0	42	0	CASKIN1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:23224652	T	C	22	0.136	19	34.474	5.738	3	36.333	1.155	16	3	SCNN1G	intronic	NA
MB_Group4_T1--2	chr16:23224652	T	C	17	0.118	15	36.000	4.536	2	37.000	0.000	14	2	SCNN1G	intronic	NA
MB_Group4_T1--3	chr16:23224652	T	C	78	0.128	67	35.821	4.152	10	35.500	3.440	63	9	SCNN1G	intronic	NA
MB_Group4_T1--4	chr16:23224652	T	C	13	0.154	11	36.000	1.789	2	36.000	1.414	11	2	SCNN1G	intronic	NA
MB_Group4_T1--5	chr16:23224652	T	C	61	0.230	47	35.660	4.913	14	36.071	2.165	40	13	SCNN1G	intronic	NA
MB_Group4_T1--6	chr16:23224652	T	C	18	0.167	15	36.333	2.968	3	35.333	2.887	15	3	SCNN1G	intronic	NA
MB_Group4_T1--GL	chr16:23224652	T	NA	36	0	36	36.333	3.513	0	0	0	35	0	SCNN1G	intronic	NA
MB_Group4_T1--1	chr16:2342006	G	A	56	0.232	43	36.116	5.261	13	35.615	2.256	39	13	ABCA3	intronic	NA
MB_Group4_T1--2	chr16:2342006	G	A	23	0.261	17	36.471	2.239	6	36.333	1.033	17	6	ABCA3	intronic	NA
MB_Group4_T1--3	chr16:2342006	G	A	119	0.025	116	35.759	4.809	3	36.333	1.155	105	3	ABCA3	intronic	NA
MB_Group4_T1--4	chr16:2342006	G	A	22	0.227	17	36.059	3.614	5	35.800	1.095	17	5	ABCA3	intronic	NA
MB_Group4_T1--5	chr16:2342006	G	A	163	0.178	133	36.526	4.860	29	36.448	1.975	123	28	ABCA3	intronic	NA
MB_Group4_T1--6	chr16:2342006	G	A	25	0.240	19	36.158	4.362	6	37.167	1.602	18	6	ABCA3	intronic	NA
MB_Group4_T1--GL	chr16:2342006	G	NA	37	0	37	35.784	4.467	0	0	0	33	0	ABCA3	intronic	NA
MB_Group4_T1--1	chr16:30535908	C	NA	25	0	25	35.600	4.717	0	0	0	23	0	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:30535908	C	A	15	0.267	11	36.364	3.075	4	35.000	0.000	11	4	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:30535908	C	A	118	0.008	117	35.009	3.687	1	35.000	0.000	110	1	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:30535908	C	A	16	0.125	14	36.571	2.593	2	38.000	4.243	14	2	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:30535908	C	NA	50	0	50	34.420	4.691	0	0	0	46	0	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:30535908	C	NA	24	0	24	35.667	2.869	0	0	0	23	0	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:30535908	C	NA	52	0	52	35.135	3.062	0	0	0	49	0	ZNF768	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:3063438	C	T	63	0.175	51	36.843	2.928	11	36.000	1.732	50	11	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:3063438	C	T	38	0.105	34	35.500	5.321	4	34.750	3.304	30	4	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:3063438	C	T	235	0.013	231	36.537	3.671	3	38.000	1.000	219	3	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:3063438	C	T	21	0.143	18	34.444	4.743	3	35.667	1.155	16	3	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:3063438	C	T	194	0.052	184	36.326	4.370	10	33.200	5.594	175	9	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:3063438	C	T	27	0.111	24	36.000	3.464	3	37.000	0.000	23	3	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:3063438	C	NA	102	0	102	35.059	4.527	0	0	0	91	0	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:3063540	G	C	70	0.057	66	36.848	3.149	4	36.500	1.000	64	4	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:3063540	G	C	78	0.128	68	34.985	6.735	10	36.400	2.119	62	10	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:3063540	G	C	240	0.046	228	36.171	5.000	11	34.455	4.132	211	10	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:3063540	G	C	18	0.056	17	35.176	5.139	1	37.000	0.000	14	1	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:3063540	G	C	247	0.093	224	36.246	5.098	23	35.348	3.761	210	21	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:3063540	G	C	35	0.086	32	35.844	5.720	3	37.000	0.000	28	3	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:3063540	G	NA	50	0	50	36.640	4.602	0	0	0	48	0	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:3063830	T	A	66	0.167	55	35.491	3.355	11	36.818	1.662	53	11	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:3063830	T	A	56	0.232	43	33.907	7.521	13	37.154	1.281	36	13	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:3063830	T	A	190	0.021	186	34.172	5.067	4	37.000	0.000	167	4	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:3063830	T	A	14	0.071	13	36.538	3.126	1	37.000	0.000	13	1	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:3063830	T	A	203	0.123	178	35.489	4.445	25	37.200	1.472	168	25	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:3063830	T	A	34	0.118	30	34.167	7.330	4	37.000	0.000	26	4	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:3063830	T	NA	62	0	61	35.525	3.815	0	0	0	58	0	CLDN9	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:3063831	C	A	66	0.167	55	35.564	3.938	11	36.727	2.533	53	11	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:3063831	C	A	56	0.232	43	35.047	5.164	13	36.846	1.519	38	13	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:3063831	C	A	190	0.021	186	34.382	5.142	4	37.000	0.000	174	4	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:3063831	C	A	14	0.071	13	36.769	2.862	1	37.000	0.000	13	1	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:3063831	C	A	203	0.123	178	35.500	4.674	25	37.280	1.339	166	25	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:3063831	C	A	34	0.118	30	35.267	6.125	4	37.000	0.000	29	4	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:3063831	C	NA	62	0	62	35.468	3.754	0	0	0	59	0	CLDN9	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:3065527	A	G	46	0.239	35	34.743	5.627	11	36.455	1.809	34	11	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:3065527	A	NA	32	0	28	36.500	3.616	0	0	0	27	0	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:3065527	A	G	215	0.037	207	34.290	5.473	8	34.000	2.138	190	8	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:3065527	A	G	22	0.273	16	35.500	3.882	6	33.833	3.601	16	5	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:3065527	A	G	164	0.165	137	34.277	4.409	27	33.148	6.017	122	24	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:3065527	A	G	17	0.059	16	34.188	4.102	1	37.000	0.000	14	1	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:3065527	A	NA	61	0	61	35.590	4.088	0	0	0	59	0	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:3065846	G	C	111	0.108	99	36.667	3.563	12	34.500	4.700	96	10	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:3065846	G	C	85	0.141	73	35.767	5.340	12	36.000	1.809	68	12	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:3065846	G	C	436	0.023	426	36.653	4.899	10	36.900	1.524	405	10	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:3065846	G	C	57	0.070	53	35.981	4.580	4	35.500	1.000	49	4	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:3065846	G	C	442	0.079	405	36.519	4.221	35	36.371	3.979	388	33	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:3065846	G	C	61	0.131	53	37.038	3.853	8	36.250	1.035	50	8	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:3065846	G	NA	91	0	90	36.867	5.621	0	0	0	84	0	CLDN6	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:3065938	T	G	72	0.111	64	36.797	2.972	8	37.250	1.669	63	8	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:3065938	T	G	45	0.222	35	37.171	3.468	10	37.400	1.265	34	10	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:3065938	T	G	267	0.045	255	37.180	3.989	12	33.833	7.779	248	10	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:3065938	T	G	31	0.097	28	36.464	3.854	3	37.000	0.000	27	3	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:3065938	T	G	264	0.091	240	36.779	4.772	24	36.583	0.830	233	24	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:3065938	T	G	41	0.098	37	36.676	3.481	4	37.000	0.000	35	4	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:3065938	T	NA	84	0	82	36.439	3.127	0	0	0	79	0	CLDN6	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:31374621	G	A	54	0.185	44	35.023	3.260	10	36.100	2.234	43	10	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:31374621	G	A	57	0.298	40	33.700	5.876	17	35.647	3.297	35	16	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:31374621	G	A	211	0.014	208	35.188	5.041	3	33.000	6.928	193	2	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:31374621	G	A	25	0.320	17	36.000	4.257	8	36.750	0.707	16	8	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:31374621	G	A	192	0.120	169	35.337	4.586	23	36.435	1.927	160	22	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:31374621	G	A	32	0.156	26	35.885	3.536	5	37.000	0.000	26	5	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:31374621	G	NA	112	0	112	34.991	4.869	0	0	0	105	0	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:31374624	G	C	50	0.200	40	34.725	3.658	10	36.500	1.581	36	10	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr16:31374624	G	C	58	0.293	41	33.951	4.878	17	35.706	4.845	37	16	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr16:31374624	G	C	203	0.015	200	35.560	4.230	3	28.000	15.588	191	2	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr16:31374624	G	C	25	0.320	17	35.882	3.871	8	36.750	0.707	16	8	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr16:31374624	G	C	188	0.122	165	34.958	5.243	23	36.435	1.727	153	22	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr16:31374624	G	C	30	0.200	24	37.375	3.076	6	36.667	0.816	24	6	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr16:31374624	G	NA	113	0	112	35.250	3.908	0	0	0	108	0	ITGAX	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr16:32847088	A	T	19	0.053	17	37.294	5.324	1	40.000	0.000	16	1	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--2	chr16:32847088	A	T	27	0.222	21	36.952	3.217	6	37.000	2.530	21	6	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--3	chr16:32847088	A	T	35	0.114	31	36.194	4.078	4	36.000	2.000	30	4	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--4	chr16:32847088	A	NA	10	0	10	37.200	3.327	0	0	0	10	0	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--5	chr16:32847088	A	T	10	0.200	8	38.500	3.162	2	38.000	4.243	8	2	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--6	chr16:32847088	A	T	23	0.130	20	38.950	2.305	3	35.333	5.508	20	3	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--GL	chr16:32847088	A	NA	35	0	33	35.515	4.501	0	0	0	29	0	TP53TG3B(dist=159640),SLC6A10P(dist=41709)	intergenic	NA
MB_Group4_T1--1	chr16:32847090	G	A	19	0.053	17	36.765	5.685	1	40.000	0.000	16	1	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--2	chr16:32847090	G	A	27	0.222	21	37.667	2.817	6	37.333	2.582	21	6	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--3	chr16:32847090	G	A	34	0.118	30	36.667	3.397	4	34.250	2.986	29	4	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--4	chr16:32847090	G	NA	10	0	10	34.000	8.743	0	0	0	8	0	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--5	chr16:32847090	G	A	10	0.200	8	38.000	3.625	2	38.000	4.243	8	2	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--6	chr16:32847090	G	A	23	0.130	20	39.000	2.534	3	36.333	1.528	20	3	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--GL	chr16:32847090	G	NA	35	0	35	36.914	2.571	0	0	0	35	0	TP53TG3B(dist=159642),SLC6A10P(dist=41707)	intergenic	NA
MB_Group4_T1--1	chr16:32851493	G	NA	35	0	35	37.114	3.066	0	0	0	35	0	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--2	chr16:32851493	G	NA	33	0	33	37.364	4.436	0	0	0	31	0	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--3	chr16:32851493	G	A	54	0.037	52	36.769	5.349	2	28.000	7.071	50	1	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--4	chr16:32851493	G	A	24	0.250	18	36.889	3.341	6	37.333	3.445	18	6	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--5	chr16:32851493	G	A	74	0.054	70	37.243	4.499	4	37.500	3.000	67	4	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--6	chr16:32851493	G	A	16	0.062	15	36.400	4.453	1	39.000	0.000	14	1	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--GL	chr16:32851493	G	NA	42	0	42	36.548	6.329	0	0	0	39	0	TP53TG3B(dist=164045),SLC6A10P(dist=37304)	intergenic	NA
MB_Group4_T1--1	chr16:33372694	T	C	38	0.079	35	37.543	4.368	3	38.667	1.528	33	3	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--2	chr16:33372694	T	C	35	0.029	34	38.765	2.425	1	41.000	0.000	34	1	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--3	chr16:33372694	T	C	111	0.072	103	37.903	4.225	8	37.125	6.010	97	7	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--4	chr16:33372694	T	C	34	0.059	32	39.281	2.083	2	35.500	6.364	32	2	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--5	chr16:33372694	T	NA	54	0	54	37.852	3.422	0	0	0	53	0	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--6	chr16:33372694	T	C	23	0.217	18	39.611	1.944	5	37.400	2.702	18	5	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--GL	chr16:33372694	T	NA	72	0	71	38.056	3.125	0	0	0	70	0	LOC390705(dist=73992),RNU6-76P(dist=90813)	intergenic	NA
MB_Group4_T1--1	chr16:33740953	A	NA	90	0	90	35.633	5.642	0	0	0	84	0	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--2	chr16:33740953	A	NA	81	0	81	36.815	3.627	0	0	0	78	0	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--3	chr16:33740953	A	NA	436	0	436	36.346	4.231	0	0	0	416	0	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--4	chr16:33740953	A	G	56	0.250	42	36.952	4.483	14	38.071	3.050	41	14	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--5	chr16:33740953	A	NA	156	0	156	36.564	4.026	0	0	0	152	0	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--6	chr16:33740953	A	G	58	0.155	48	37.021	3.118	9	36.556	3.468	48	9	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--GL	chr16:33740953	A	NA	266	0	266	37.064	3.625	0	0	0	260	0	RNU6-76P(dist=177710),LINC00273(dist=220099)	intergenic	NA
MB_Group4_T1--1	chr16:33961140	T	NA	46	0	46	36.022	4.730	0	0	0	43	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--2	chr16:33961140	T	NA	39	0	39	33.077	8.109	0	0	0	32	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--3	chr16:33961140	T	NA	93	0	93	35.226	5.984	0	0	0	78	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--4	chr16:33961140	T	C	15	0.200	12	36.083	2.875	3	38.333	4.619	12	3	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--5	chr16:33961140	T	NA	90	0	90	33.633	7.797	0	0	0	74	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--6	chr16:33961140	T	NA	15	0	15	36.933	2.915	0	0	0	15	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--GL	chr16:33961140	T	NA	68	0	68	34.662	5.541	0	0	0	60	0	LINC00273	ncRNA_exonic	NA
MB_Group4_T1--1	chr16:46694731	T	A	34	0.059	32	35.281	7.502	2	35.000	0.000	29	2	VPS35	intronic	NA
MB_Group4_T1--2	chr16:46694731	T	A	30	0.033	29	36.345	6.275	1	33.000	0.000	27	1	VPS35	intronic	NA
MB_Group4_T1--3	chr16:46694731	T	A	48	0.104	43	36.093	5.277	5	34.200	1.095	41	5	VPS35	intronic	NA
MB_Group4_T1--4	chr16:46694731	T	A	14	0.143	12	37.417	4.231	2	35.000	0.000	11	2	VPS35	intronic	NA
MB_Group4_T1--5	chr16:46694731	T	A	29	0.310	20	35.700	7.519	9	33.667	3.317	18	8	VPS35	intronic	NA
MB_Group4_T1--6	chr16:46694731	T	A	22	0.455	12	38.000	4.954	10	33.600	1.350	11	10	VPS35	intronic	NA
MB_Group4_T1--GL	chr16:46694731	T	NA	71	0	71	34.873	7.408	0	0	0	66	0	VPS35	intronic	NA
MB_Group4_T1--1	chr16:46694732	C	NA	39	0	32	35.812	6.621	0	0	0	29	0	VPS35	intronic	NA
MB_Group4_T1--2	chr16:46694732	C	A	40	0.275	29	36.379	4.671	11	33.727	1.618	26	11	VPS35	intronic	NA
MB_Group4_T1--3	chr16:46694732	C	NA	60	0	42	36.643	3.456	0	0	0	40	0	VPS35	intronic	NA
MB_Group4_T1--4	chr16:46694732	C	NA	18	0	12	38.417	2.503	0	0	0	12	0	VPS35	intronic	NA
MB_Group4_T1--5	chr16:46694732	C	A	37	0.459	20	36.400	6.286	17	33.118	4.768	19	16	VPS35	intronic	NA
MB_Group4_T1--6	chr16:46694732	C	A	31	0.613	12	38.917	2.937	19	34.474	1.307	12	19	VPS35	intronic	NA
MB_Group4_T1--GL	chr16:46694732	C	NA	74	0	71	35.282	7.045	0	0	0	67	0	VPS35	intronic	NA
MB_Group4_T1--1	chr16:55844737	G	C	57	0.140	49	36.000	3.697	8	36.375	1.188	47	8	CES1	intronic	NA
MB_Group4_T1--2	chr16:55844737	G	C	61	0.115	53	36.604	5.104	7	36.714	0.756	51	7	CES1	intronic	NA
MB_Group4_T1--3	chr16:55844737	G	C	201	0.030	195	35.687	5.190	6	32.167	10.889	180	5	CES1	intronic	NA
MB_Group4_T1--4	chr16:55844737	G	C	47	0.064	44	36.023	3.400	3	37.000	0.000	43	3	CES1	intronic	NA
MB_Group4_T1--5	chr16:55844737	G	NA	92	0	92	34.924	5.095	0	0	0	83	0	CES1	intronic	NA
MB_Group4_T1--6	chr16:55844737	G	C	42	0.048	39	36.308	3.540	2	37.000	0.000	38	2	CES1	intronic	NA
MB_Group4_T1--GL	chr16:55844737	G	NA	170	0	170	35.688	3.941	0	0	0	158	0	CES1	intronic	NA
MB_Group4_T1--1	chr16:56535049	T	C	47	0.128	41	37.634	2.488	6	37.167	2.229	41	6	BBS2	intronic	NA
MB_Group4_T1--2	chr16:56535049	T	C	44	0.068	41	37.585	2.702	3	37.333	2.517	40	3	BBS2	intronic	NA
MB_Group4_T1--3	chr16:56535049	T	NA	89	0	89	35.989	4.879	0	0	0	81	0	BBS2	intronic	NA
MB_Group4_T1--4	chr16:56535049	T	C	18	0.056	17	37.471	2.577	1	31.000	0.000	17	1	BBS2	intronic	NA
MB_Group4_T1--5	chr16:56535049	T	C	61	0.213	47	36.234	3.743	13	36.769	2.833	45	13	BBS2	intronic	NA
MB_Group4_T1--6	chr16:56535049	T	NA	20	0	20	35.300	3.771	0	0	0	18	0	BBS2	intronic	NA
MB_Group4_T1--GL	chr16:56535049	T	NA	75	0	75	36.733	3.768	0	0	0	71	0	BBS2	intronic	NA
MB_Group4_T1--1	chr16:56535050	A	G	47	0.085	43	36.977	3.262	4	37.000	0.000	42	4	BBS2	intronic	NA
MB_Group4_T1--2	chr16:56535050	A	G	45	0.044	43	37.209	3.468	2	36.000	1.414	41	2	BBS2	intronic	NA
MB_Group4_T1--3	chr16:56535050	A	NA	89	0	88	35.420	6.291	0	0	0	80	0	BBS2	intronic	NA
MB_Group4_T1--4	chr16:56535050	A	NA	18	0	18	37.444	2.281	0	0	0	18	0	BBS2	intronic	NA
MB_Group4_T1--5	chr16:56535050	A	G	61	0.180	50	35.380	5.969	11	35.364	2.541	45	11	BBS2	intronic	NA
MB_Group4_T1--6	chr16:56535050	A	NA	20	0	19	34.105	6.649	0	0	0	16	0	BBS2	intronic	NA
MB_Group4_T1--GL	chr16:56535050	A	NA	77	0	77	36.286	4.307	0	0	0	71	0	BBS2	intronic	NA
MB_Group4_T1--1	chr16:56700815	C	T	61	0.098	55	37.182	4.385	6	35.333	2.251	54	6	MT1G	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:56700815	C	T	49	0.184	40	37.400	3.193	9	35.556	2.555	38	9	MT1G	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:56700815	C	T	114	0.018	112	37.500	3.536	2	34.000	0.000	108	2	MT1G	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:56700815	C	T	31	0.161	26	34.923	4.673	5	35.800	2.683	22	5	MT1G	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:56700815	C	T	106	0.075	98	36.990	3.800	8	35.875	2.295	93	8	MT1G	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:56700815	C	T	24	0.083	22	35.318	6.380	2	37.000	0.000	19	2	MT1G	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:56700815	C	NA	43	0	43	38.233	2.819	0	0	0	43	0	MT1G	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:56700818	T	C	61	0.115	54	36.852	3.959	7	36.286	1.380	51	7	MT1G	exonic	synonymous_SNV
MB_Group4_T1--2	chr16:56700818	T	C	49	0.184	40	37.075	3.852	9	35.778	2.438	39	9	MT1G	exonic	synonymous_SNV
MB_Group4_T1--3	chr16:56700818	T	C	118	0.025	115	36.904	4.818	3	32.667	7.506	110	2	MT1G	exonic	synonymous_SNV
MB_Group4_T1--4	chr16:56700818	T	C	30	0.167	25	34.920	6.763	5	37.800	1.789	22	5	MT1G	exonic	synonymous_SNV
MB_Group4_T1--5	chr16:56700818	T	C	108	0.083	99	36.667	4.405	9	32.333	10.173	95	8	MT1G	exonic	synonymous_SNV
MB_Group4_T1--6	chr16:56700818	T	C	25	0.080	23	34.652	6.191	2	37.000	0.000	20	2	MT1G	exonic	synonymous_SNV
MB_Group4_T1--GL	chr16:56700818	T	NA	43	0	43	37.884	3.825	0	0	0	41	0	MT1G	exonic	synonymous_SNV
MB_Group4_T1--1	chr16:56701158	A	C	90	0.167	75	34.813	4.744	15	35.400	4.137	69	13	MT1G	intronic	NA
MB_Group4_T1--2	chr16:56701158	A	C	117	0.188	95	35.811	4.394	22	36.318	2.732	87	22	MT1G	intronic	NA
MB_Group4_T1--3	chr16:56701158	A	C	255	0.043	244	35.578	3.906	11	34.636	8.176	234	10	MT1G	intronic	NA
MB_Group4_T1--4	chr16:56701158	A	C	55	0.164	46	35.326	5.300	9	37.111	2.892	43	9	MT1G	intronic	NA
MB_Group4_T1--5	chr16:56701158	A	C	325	0.114	288	35.302	4.899	37	36.135	1.917	271	37	MT1G	intronic	NA
MB_Group4_T1--6	chr16:56701158	A	C	46	0.087	42	34.286	7.044	4	38.000	2.000	36	4	MT1G	intronic	NA
MB_Group4_T1--GL	chr16:56701158	A	NA	80	0	80	35.712	4.481	0	0	0	74	0	MT1G	intronic	NA
MB_Group4_T1--1	chr16:56703875	A	G	56	0.143	48	36.417	5.206	8	36.375	1.768	45	8	MT1H	intronic	NA
MB_Group4_T1--2	chr16:56703875	A	G	52	0.250	39	37.744	2.268	13	35.615	2.844	39	12	MT1H	intronic	NA
MB_Group4_T1--3	chr16:56703875	A	G	149	0.047	142	37.563	3.836	7	37.000	0.000	139	7	MT1H	intronic	NA
MB_Group4_T1--4	chr16:56703875	A	G	25	0.360	16	37.500	2.530	9	35.333	2.828	16	9	MT1H	intronic	NA
MB_Group4_T1--5	chr16:56703875	A	G	158	0.089	144	37.889	3.204	14	37.000	1.359	143	14	MT1H	intronic	NA
MB_Group4_T1--6	chr16:56703875	A	G	19	0.053	18	37.778	5.986	1	37.000	0.000	17	1	MT1H	intronic	NA
MB_Group4_T1--GL	chr16:56703875	A	NA	70	0	70	37.671	3.096	0	0	0	69	0	MT1H	intronic	NA
MB_Group4_T1--1	chr16:56704370	A	C	68	0.147	58	36.414	6.249	10	36.200	2.530	54	9	MT1H	intronic	NA
MB_Group4_T1--2	chr16:56704370	A	C	65	0.185	53	35.925	5.751	12	35.917	2.610	49	11	MT1H	intronic	NA
MB_Group4_T1--3	chr16:56704370	A	C	199	0.020	195	37.456	4.498	4	37.000	0.000	188	4	MT1H	intronic	NA
MB_Group4_T1--4	chr16:56704370	A	C	46	0.043	44	36.500	4.767	2	37.000	0.000	42	2	MT1H	intronic	NA
MB_Group4_T1--5	chr16:56704370	A	C	179	0.050	169	37.225	4.331	9	35.444	3.609	159	8	MT1H	intronic	NA
MB_Group4_T1--6	chr16:56704370	A	C	32	0.094	29	36.241	4.830	3	29.667	11.015	25	2	MT1H	intronic	NA
MB_Group4_T1--GL	chr16:56704370	A	NA	82	0	82	37.744	3.953	0	0	0	76	0	MT1H	intronic	NA
MB_Group4_T1--1	chr16:57996458	T	C	39	0.154	33	36.818	4.978	6	33.167	7.055	31	5	CNGB1	intronic	NA
MB_Group4_T1--2	chr16:57996458	T	C	43	0.209	34	38.382	2.742	9	36.556	0.882	34	9	CNGB1	intronic	NA
MB_Group4_T1--3	chr16:57996458	T	C	213	0.113	189	37.270	4.018	24	35.458	4.644	182	21	CNGB1	intronic	NA
MB_Group4_T1--4	chr16:57996458	T	C	29	0.034	28	36.893	2.780	1	37.000	0.000	28	1	CNGB1	intronic	NA
MB_Group4_T1--5	chr16:57996458	T	C	178	0.247	134	36.716	4.672	44	35.432	4.250	127	43	CNGB1	intronic	NA
MB_Group4_T1--6	chr16:57996458	T	C	27	0.074	25	37.200	3.862	2	37.000	0.000	24	2	CNGB1	intronic	NA
MB_Group4_T1--GL	chr16:57996458	T	NA	89	0	89	37.663	3.381	0	0	0	87	0	CNGB1	intronic	NA
MB_Group4_T1--1	chr16:57996461	G	A	39	0.154	33	38.152	3.114	6	36.000	1.673	33	6	CNGB1	intronic	NA
MB_Group4_T1--2	chr16:57996461	G	A	46	0.217	36	38.250	2.989	10	36.800	0.632	35	10	CNGB1	intronic	NA
MB_Group4_T1--3	chr16:57996461	G	A	212	0.123	186	37.677	3.562	26	36.462	1.240	181	26	CNGB1	intronic	NA
MB_Group4_T1--4	chr16:57996461	G	A	29	0.034	28	37.357	2.857	1	37.000	0.000	28	1	CNGB1	intronic	NA
MB_Group4_T1--5	chr16:57996461	G	A	180	0.256	134	37.522	4.409	46	36.217	1.604	128	45	CNGB1	intronic	NA
MB_Group4_T1--6	chr16:57996461	G	A	26	0.077	24	38.458	2.904	2	36.000	1.414	24	2	CNGB1	intronic	NA
MB_Group4_T1--GL	chr16:57996461	G	NA	90	0	90	37.822	3.430	0	0	0	88	0	CNGB1	intronic	NA
MB_Group4_T1--1	chr16:57997079	A	C	32	0.219	25	37.600	4.272	7	34.000	1.732	22	7	CNGB1	intronic	NA
MB_Group4_T1--2	chr16:57997079	A	C	18	0.389	11	38.000	3.033	7	32.286	1.604	11	7	CNGB1	intronic	NA
MB_Group4_T1--3	chr16:57997079	A	NA	134	0	134	37.776	3.727	0	0	0	129	0	CNGB1	intronic	NA
MB_Group4_T1--4	chr16:57997079	A	NA	15	0	15	37.400	4.306	0	0	0	14	0	CNGB1	intronic	NA
MB_Group4_T1--5	chr16:57997079	A	C	116	0.388	71	37.197	3.733	45	33.022	1.574	68	44	CNGB1	intronic	NA
MB_Group4_T1--6	chr16:57997079	A	NA	10	0	10	37.100	3.281	0	0	0	10	0	CNGB1	intronic	NA
MB_Group4_T1--GL	chr16:57997079	A	NA	50	0	50	37.940	3.026	0	0	0	50	0	CNGB1	intronic	NA
MB_Group4_T1--1	chr16:66792581	C	NA	20	0	20	35.750	4.529	0	0	0	19	0	CCDC79	intronic	NA
MB_Group4_T1--2	chr16:66792581	C	NA	20	0	19	34.105	3.230	0	0	0	18	0	CCDC79	intronic	NA
MB_Group4_T1--3	chr16:66792581	C	T	66	0.030	64	32.828	7.427	2	25.000	16.971	54	1	CCDC79	intronic	NA
MB_Group4_T1--4	chr16:66792581	C	NA	17	0	17	30.765	6.320	0	0	0	12	0	CCDC79	intronic	NA
MB_Group4_T1--5	chr16:66792581	C	T	35	0.171	29	32.862	5.104	6	37.333	0.816	24	6	CCDC79	intronic	NA
MB_Group4_T1--6	chr16:66792581	C	NA	18	0	18	34.556	5.261	0	0	0	14	0	CCDC79	intronic	NA
MB_Group4_T1--GL	chr16:66792581	C	NA	54	0	54	33.407	6.017	0	0	0	48	0	CCDC79	intronic	NA
MB_Group4_T1--1	chr16:66806334	G	A	21	0.048	20	32.400	7.493	1	37.000	0.000	16	1	CCDC79	intronic	NA
MB_Group4_T1--2	chr16:66806334	G	A	12	0.250	9	37.111	4.076	3	37.000	0.000	8	3	CCDC79	intronic	NA
MB_Group4_T1--3	chr16:66806334	G	A	63	0.143	54	34.741	5.681	9	36.556	0.882	46	9	CCDC79	intronic	NA
MB_Group4_T1--4	chr16:66806334	G	NA	10	0	10	37.600	4.377	0	0	0	9	0	CCDC79	intronic	NA
MB_Group4_T1--5	chr16:66806334	G	A	57	0.211	45	36.644	5.424	12	36.667	1.155	42	12	CCDC79	intronic	NA
MB_Group4_T1--6	chr16:66806334	G	A	14	0.071	13	34.923	3.730	1	37.000	0.000	12	1	CCDC79	intronic	NA
MB_Group4_T1--GL	chr16:66806334	G	NA	43	0	43	37.326	4.133	0	0	0	41	0	CCDC79	intronic	NA
MB_Group4_T1--1	chr16:67857679	A	G	30	0.333	20	38.350	3.528	10	36.900	1.792	19	10	TSNAXIP1	intronic	NA
MB_Group4_T1--2	chr16:67857679	A	G	23	0.174	19	37.842	3.371	4	37.000	0.000	18	4	TSNAXIP1	intronic	NA
MB_Group4_T1--3	chr16:67857679	A	G	43	0.070	40	38.300	2.803	3	37.000	0.000	39	3	TSNAXIP1	intronic	NA
MB_Group4_T1--4	chr16:67857679	A	G	13	0.308	9	40.000	1.658	4	37.000	0.000	9	4	TSNAXIP1	intronic	NA
MB_Group4_T1--5	chr16:67857679	A	G	49	0.082	45	37.178	3.386	4	36.250	1.500	43	4	TSNAXIP1	intronic	NA
MB_Group4_T1--6	chr16:67857679	A	G	16	0.250	12	39.333	2.741	4	36.500	1.000	12	4	TSNAXIP1	intronic	NA
MB_Group4_T1--GL	chr16:67857679	A	NA	33	0	33	37.394	3.030	0	0	0	33	0	TSNAXIP1	intronic	NA
MB_Group4_T1--1	chr16:70294793	C	T	29	0.069	26	36.808	3.175	2	37.000	0.000	26	2	AARS	intronic	NA
MB_Group4_T1--2	chr16:70294793	C	T	26	0.231	20	37.150	3.422	6	37.667	1.633	19	6	AARS	intronic	NA
MB_Group4_T1--3	chr16:70294793	C	T	75	0.053	70	37.843	3.566	4	37.000	0.000	68	4	AARS	intronic	NA
MB_Group4_T1--4	chr16:70294793	C	T	12	0.250	9	37.778	2.906	3	36.333	1.155	9	3	AARS	intronic	NA
MB_Group4_T1--5	chr16:70294793	C	T	84	0.190	68	37.353	3.737	16	35.875	1.893	67	16	AARS	intronic	NA
MB_Group4_T1--6	chr16:70294793	C	NA	11	0	11	35.273	5.533	0	0	0	9	0	AARS	intronic	NA
MB_Group4_T1--GL	chr16:70294793	C	NA	40	0	40	36.725	3.464	0	0	0	39	0	AARS	intronic	NA
MB_Group4_T1--1	chr16:72107692	C	T	36	0.194	29	36.828	5.745	7	32.143	6.543	26	5	HPR	intronic	NA
MB_Group4_T1--2	chr16:72107692	C	T	40	0.075	37	36.270	6.176	3	35.000	2.000	35	3	HPR	intronic	NA
MB_Group4_T1--3	chr16:72107692	C	T	114	0.035	110	36.209	5.487	4	37.000	1.633	101	4	HPR	intronic	NA
MB_Group4_T1--4	chr16:72107692	C	T	25	0.120	22	37.136	2.833	3	33.000	2.000	22	3	HPR	intronic	NA
MB_Group4_T1--5	chr16:72107692	C	NA	40	0	38	37.368	3.664	0	0	0	37	0	HPR	intronic	NA
MB_Group4_T1--6	chr16:72107692	C	T	20	0.050	19	35.579	7.003	1	31.000	0.000	18	1	HPR	intronic	NA
MB_Group4_T1--GL	chr16:72107692	C	NA	82	0	81	37.605	3.085	0	0	0	79	0	HPR	intronic	NA
MB_Group4_T1--1	chr16:72123997	T	C	21	0.238	16	34.812	4.324	5	38.200	2.168	14	5	TXNL4B	intronic	NA
MB_Group4_T1--2	chr16:72123997	T	NA	25	0	25	34.320	4.845	0	0	0	22	0	TXNL4B	intronic	NA
MB_Group4_T1--3	chr16:72123997	T	C	106	0.075	98	34.602	4.972	8	31.875	9.731	89	7	TXNL4B	intronic	NA
MB_Group4_T1--4	chr16:72123997	T	NA	18	0	18	36.444	2.357	0	0	0	18	0	TXNL4B	intronic	NA
MB_Group4_T1--5	chr16:72123997	T	C	55	0.236	42	35.095	4.710	13	35.385	6.117	39	11	TXNL4B	intronic	NA
MB_Group4_T1--6	chr16:72123997	T	C	18	0.056	17	35.706	3.653	1	36.000	0.000	15	1	TXNL4B	intronic	NA
MB_Group4_T1--GL	chr16:72123997	T	NA	49	0	49	33.184	4.480	0	0	0	42	0	TXNL4B	intronic	NA
MB_Group4_T1--1	chr16:72124015	T	G	60	0.600	24	32.375	5.625	36	36.667	1.512	19	36	TXNL4B	intronic	NA
MB_Group4_T1--2	chr16:72124015	T	G	43	0.372	27	33.333	7.432	16	35.750	2.408	22	15	TXNL4B	intronic	NA
MB_Group4_T1--3	chr16:72124015	T	G	150	0.153	127	32.252	6.683	23	36.130	1.961	95	23	TXNL4B	intronic	NA
MB_Group4_T1--4	chr16:72124015	T	G	26	0.154	22	34.136	6.120	4	35.500	1.915	18	4	TXNL4B	intronic	NA
MB_Group4_T1--5	chr16:72124015	T	G	91	0.374	57	31.193	7.843	34	34.912	4.447	46	31	TXNL4B	intronic	NA
MB_Group4_T1--6	chr16:72124015	T	G	22	0.182	18	33.111	7.283	4	36.500	2.646	15	4	TXNL4B	intronic	NA
MB_Group4_T1--GL	chr16:72124015	T	NA	54	0	52	32.635	4.943	0	0	0	41	0	TXNL4B	intronic	NA
MB_Group4_T1--1	chr16:72124016	A	T	60	0.583	24	36.583	3.063	35	30.971	6.763	23	30	TXNL4B	intronic	NA
MB_Group4_T1--2	chr16:72124016	A	T	42	0.357	27	34.407	6.488	15	33.133	2.386	24	14	TXNL4B	intronic	NA
MB_Group4_T1--3	chr16:72124016	A	T	150	0.153	127	35.039	5.356	23	31.391	7.050	111	18	TXNL4B	intronic	NA
MB_Group4_T1--4	chr16:72124016	A	T	26	0.115	23	34.870	7.175	3	34.667	2.517	20	3	TXNL4B	intronic	NA
MB_Group4_T1--5	chr16:72124016	A	T	91	0.352	57	33.456	7.600	32	29.938	8.791	49	24	TXNL4B	intronic	NA
MB_Group4_T1--6	chr16:72124016	A	T	22	0.182	18	35.889	4.378	4	28.500	11.091	17	3	TXNL4B	intronic	NA
MB_Group4_T1--GL	chr16:72124016	A	NA	54	0	54	33.648	6.888	0	0	0	45	0	TXNL4B	intronic	NA
MB_Group4_T1--1	chr16:738105	C	NA	24	0	24	37.375	5.460	0	0	0	22	0	WDR24	intronic	NA
MB_Group4_T1--2	chr16:738105	C	NA	33	0	33	34.879	5.920	0	0	0	31	0	WDR24	intronic	NA
MB_Group4_T1--3	chr16:738105	C	NA	191	0	191	35.937	5.811	0	0	0	174	0	WDR24	intronic	NA
MB_Group4_T1--4	chr16:738105	C	T	14	0.214	11	39.091	2.023	3	36.000	2.646	11	3	WDR24	intronic	NA
MB_Group4_T1--5	chr16:738105	C	NA	189	0	188	36.181	5.825	0	0	0	177	0	WDR24	intronic	NA
MB_Group4_T1--6	chr16:738105	C	NA	27	0	27	37.074	3.615	0	0	0	25	0	WDR24	intronic	NA
MB_Group4_T1--GL	chr16:738105	C	NA	44	0	44	36.000	4.254	0	0	0	41	0	WDR24	intronic	NA
MB_Group4_T1--1	chr16:75653547	A	G	38	0.105	33	32.636	7.284	4	38.500	1.000	28	4	ADAT1	intronic	NA
MB_Group4_T1--2	chr16:75653547	A	G	31	0.161	26	34.115	6.276	5	38.000	1.732	23	5	ADAT1	intronic	NA
MB_Group4_T1--3	chr16:75653547	A	G	83	0.036	79	32.924	6.855	3	38.667	0.577	67	3	ADAT1	intronic	NA
MB_Group4_T1--4	chr16:75653547	A	G	23	0.087	20	35.450	5.726	2	39.000	0.000	19	2	ADAT1	intronic	NA
MB_Group4_T1--5	chr16:75653547	A	G	46	0.065	42	31.786	7.710	3	31.667	12.702	32	2	ADAT1	intronic	NA
MB_Group4_T1--6	chr16:75653547	A	G	15	0.267	11	34.818	2.822	4	38.250	0.957	11	4	ADAT1	intronic	NA
MB_Group4_T1--GL	chr16:75653547	A	NA	59	0	59	34.610	4.938	0	0	0	53	0	ADAT1	intronic	NA
MB_Group4_T1--1	chr16:75653551	T	G	37	0.108	33	36.879	3.911	4	37.000	0.000	31	4	ADAT1	intronic	NA
MB_Group4_T1--2	chr16:75653551	T	G	32	0.156	27	37.815	2.450	5	37.000	0.000	27	5	ADAT1	intronic	NA
MB_Group4_T1--3	chr16:75653551	T	G	84	0.048	80	38.125	2.744	4	37.000	0.000	80	4	ADAT1	intronic	NA
MB_Group4_T1--4	chr16:75653551	T	G	23	0.130	20	37.850	2.758	3	37.667	1.155	20	3	ADAT1	intronic	NA
MB_Group4_T1--5	chr16:75653551	T	G	44	0.068	41	37.000	5.822	3	35.333	2.887	39	3	ADAT1	intronic	NA
MB_Group4_T1--6	chr16:75653551	T	G	14	0.357	9	38.000	2.179	5	37.400	0.894	9	5	ADAT1	intronic	NA
MB_Group4_T1--GL	chr16:75653551	T	NA	55	0	55	37.709	2.543	0	0	0	54	0	ADAT1	intronic	NA
MB_Group4_T1--1	chr16:84182459	A	T	14	0.214	11	34.909	8.142	3	36.333	1.155	10	3	DNAAF1	intronic	NA
MB_Group4_T1--2	chr16:84182459	A	NA	13	0	13	36.154	4.240	0	0	0	12	0	DNAAF1	intronic	NA
MB_Group4_T1--3	chr16:84182459	A	NA	89	0	89	36.506	3.647	0	0	0	83	0	DNAAF1	intronic	NA
MB_Group4_T1--4	chr16:84182459	A	T	18	0.111	16	36.312	3.114	2	31.000	8.485	15	1	DNAAF1	intronic	NA
MB_Group4_T1--5	chr16:84182459	A	T	54	0.093	49	34.918	7.413	5	33.200	4.712	43	4	DNAAF1	intronic	NA
MB_Group4_T1--6	chr16:84182459	A	NA	11	0	11	37.091	2.587	0	0	0	11	0	DNAAF1	intronic	NA
MB_Group4_T1--GL	chr16:84182459	A	NA	41	0	41	37.000	2.820	0	0	0	41	0	DNAAF1	intronic	NA
MB_Group4_T1--1	chr16:84473025	T	A	19	0.211	15	36.533	3.925	4	36.750	2.872	14	4	ATP2C2	intronic	NA
MB_Group4_T1--2	chr16:84473025	T	NA	19	0	19	37.947	2.549	0	0	0	19	0	ATP2C2	intronic	NA
MB_Group4_T1--3	chr16:84473025	T	NA	94	0	94	36.436	3.983	0	0	0	91	0	ATP2C2	intronic	NA
MB_Group4_T1--4	chr16:84473025	T	NA	15	0	15	37.533	2.997	0	0	0	15	0	ATP2C2	intronic	NA
MB_Group4_T1--5	chr16:84473025	T	NA	43	0	43	35.535	4.631	0	0	0	39	0	ATP2C2	intronic	NA
MB_Group4_T1--6	chr16:84473025	T	NA	14	0	14	37.429	2.980	0	0	0	14	0	ATP2C2	intronic	NA
MB_Group4_T1--GL	chr16:84473025	T	NA	78	0	78	36.885	3.654	0	0	0	76	0	ATP2C2	intronic	NA
MB_Group4_T1--1	chr16:89804336	T	NA	32	0	20	35.650	4.591	0	0	0	18	0	FANCA	UTR3	NA
MB_Group4_T1--2	chr16:89804336	T	NA	34	0	17	35.353	5.915	0	0	0	16	0	FANCA	UTR3	NA
MB_Group4_T1--3	chr16:89804336	T	NA	184	0	94	35.915	3.786	0	0	0	90	0	FANCA	UTR3	NA
MB_Group4_T1--4	chr16:89804336	T	NA	19	0	9	36.111	3.983	0	0	0	9	0	FANCA	UTR3	NA
MB_Group4_T1--5	chr16:89804336	T	C	103	0.107	42	35.095	3.824	11	33.455	1.916	38	11	FANCA	UTR3	NA
MB_Group4_T1--6	chr16:89804336	T	NA	22	0	11	34.091	3.534	0	0	0	9	0	FANCA	UTR3	NA
MB_Group4_T1--GL	chr16:89804336	T	NA	94	0	46	35.435	4.246	0	0	0	44	0	FANCA	UTR3	NA
MB_Group4_T1--1	chr16:9928361	T	C	19	0.211	15	36.133	6.854	4	38.000	1.155	14	4	GRIN2A	intronic	NA
MB_Group4_T1--2	chr16:9928361	T	C	21	0.143	18	36.722	4.170	3	36.333	1.155	16	3	GRIN2A	intronic	NA
MB_Group4_T1--3	chr16:9928361	T	NA	34	0	34	36.559	6.006	0	0	0	31	0	GRIN2A	intronic	NA
MB_Group4_T1--4	chr16:9928361	T	C	18	0.167	15	35.667	6.499	3	37.667	1.155	13	3	GRIN2A	intronic	NA
MB_Group4_T1--5	chr16:9928361	T	C	57	0.070	53	34.302	7.064	4	35.250	6.238	45	3	GRIN2A	intronic	NA
MB_Group4_T1--6	chr16:9928361	T	C	11	0.182	9	35.111	6.294	2	37.000	0.000	8	2	GRIN2A	intronic	NA
MB_Group4_T1--GL	chr16:9928361	T	NA	33	0	33	37.121	5.441	0	0	0	30	0	GRIN2A	intronic	NA
MB_Group4_T1--1	chr17:10322444	A	G	30	0.100	27	37.444	2.926	3	36.000	1.732	27	3	MYH8	intronic	NA
MB_Group4_T1--2	chr17:10322444	A	G	32	0.062	30	36.667	2.440	2	37.000	0.000	30	2	MYH8	intronic	NA
MB_Group4_T1--3	chr17:10322444	A	NA	112	0	112	36.589	3.769	0	0	0	108	0	MYH8	intronic	NA
MB_Group4_T1--4	chr17:10322444	A	NA	26	0	26	35.269	4.162	0	0	0	24	0	MYH8	intronic	NA
MB_Group4_T1--5	chr17:10322444	A	G	55	0.200	43	35.837	4.100	11	36.000	3.317	41	10	MYH8	intronic	NA
MB_Group4_T1--6	chr17:10322444	A	NA	27	0	27	35.704	3.921	0	0	0	25	0	MYH8	intronic	NA
MB_Group4_T1--GL	chr17:10322444	A	NA	132	0	132	35.962	4.785	0	0	0	123	0	MYH8	intronic	NA
MB_Group4_T1--1	chr17:1375446	C	NA	25	0	25	37.040	3.600	0	0	0	24	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:1375446	C	NA	29	0	29	35.345	5.260	0	0	0	26	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:1375446	C	NA	163	0	163	36.252	3.650	0	0	0	157	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:1375446	C	T	22	0.182	18	34.111	5.645	4	35.750	3.594	15	4	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:1375446	C	NA	90	0	90	35.700	3.770	0	0	0	84	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:1375446	C	NA	18	0	18	35.000	3.881	0	0	0	16	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:1375446	C	NA	82	0	82	36.439	3.131	0	0	0	80	0	MYO1C	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:15518869	T	C	22	0.364	14	35.786	8.229	8	32.125	7.160	13	7	CDRT1	intronic	NA
MB_Group4_T1--2	chr17:15518869	T	C	21	0.238	16	39.312	2.651	5	34.000	2.121	16	5	CDRT1	intronic	NA
MB_Group4_T1--3	chr17:15518869	T	C	78	0.167	65	37.862	4.541	13	32.154	7.679	61	10	CDRT1	intronic	NA
MB_Group4_T1--4	chr17:15518869	T	C	12	0.250	9	34.667	10.630	3	32.000	4.583	8	2	CDRT1	intronic	NA
MB_Group4_T1--5	chr17:15518869	T	C	116	0.129	101	38.040	4.285	15	35.267	1.944	95	15	CDRT1	intronic	NA
MB_Group4_T1--6	chr17:15518869	T	C	19	0.105	17	38.529	2.601	2	34.500	0.707	17	2	CDRT1	intronic	NA
MB_Group4_T1--GL	chr17:15518869	T	NA	34	0	34	37.735	4.062	0	0	0	33	0	CDRT1	intronic	NA
MB_Group4_T1--1	chr17:15518872	T	C	22	0.364	14	36.429	5.110	8	36.500	0.926	12	8	CDRT1	intronic	NA
MB_Group4_T1--2	chr17:15518872	T	C	22	0.227	17	39.294	2.173	5	36.600	0.894	17	5	CDRT1	intronic	NA
MB_Group4_T1--3	chr17:15518872	T	C	78	0.179	64	38.547	3.572	14	36.071	1.385	63	14	CDRT1	intronic	NA
MB_Group4_T1--4	chr17:15518872	T	C	12	0.250	9	34.333	7.263	3	35.667	1.155	7	3	CDRT1	intronic	NA
MB_Group4_T1--5	chr17:15518872	T	C	115	0.130	100	37.860	4.276	15	36.400	1.549	95	15	CDRT1	intronic	NA
MB_Group4_T1--6	chr17:15518872	T	C	19	0.158	16	37.562	8.099	3	36.333	1.155	15	3	CDRT1	intronic	NA
MB_Group4_T1--GL	chr17:15518872	T	NA	33	0	33	38.848	2.320	0	0	0	33	0	CDRT1	intronic	NA
MB_Group4_T1--1	chr17:15884462	C	NA	29	0	29	37.414	3.006	0	0	0	29	0	ZSWIM7	intronic	NA
MB_Group4_T1--2	chr17:15884462	C	NA	27	0	27	36.852	3.382	0	0	0	26	0	ZSWIM7	intronic	NA
MB_Group4_T1--3	chr17:15884462	C	NA	77	0	77	37.468	3.527	0	0	0	75	0	ZSWIM7	intronic	NA
MB_Group4_T1--4	chr17:15884462	C	A	13	0.231	10	38.500	2.506	3	39.000	3.464	10	3	ZSWIM7	intronic	NA
MB_Group4_T1--5	chr17:15884462	C	NA	72	0	72	37.069	3.994	0	0	0	69	0	ZSWIM7	intronic	NA
MB_Group4_T1--6	chr17:15884462	C	NA	24	0	24	36.958	6.564	0	0	0	23	0	ZSWIM7	intronic	NA
MB_Group4_T1--GL	chr17:15884462	C	NA	54	0	54	37.019	2.898	0	0	0	53	0	ZSWIM7	intronic	NA
MB_Group4_T1--1	chr17:15896955	T	NA	22	0	22	37.591	2.423	0	0	0	22	0	ZSWIM7	intronic	NA
MB_Group4_T1--2	chr17:15896955	T	C	35	0.143	30	37.733	3.118	5	35.400	2.608	29	5	ZSWIM7	intronic	NA
MB_Group4_T1--3	chr17:15896955	T	NA	76	0	75	37.867	3.923	0	0	0	74	0	ZSWIM7	intronic	NA
MB_Group4_T1--4	chr17:15896955	T	C	17	0.059	15	37.667	2.059	1	35.000	0.000	15	1	ZSWIM7	intronic	NA
MB_Group4_T1--5	chr17:15896955	T	C	51	0.098	46	36.152	5.781	5	35.800	6.261	42	4	ZSWIM7	intronic	NA
MB_Group4_T1--6	chr17:15896955	T	NA	26	0	26	35.885	6.364	0	0	0	24	0	ZSWIM7	intronic	NA
MB_Group4_T1--GL	chr17:15896955	T	NA	46	0	46	36.913	3.747	0	0	0	44	0	ZSWIM7	intronic	NA
MB_Group4_T1--1	chr17:17117308	C	NA	21	0	21	37.000	4.099	0	0	0	21	0	FLCN	intronic	NA
MB_Group4_T1--2	chr17:17117308	C	NA	29	0	29	37.379	3.629	0	0	0	28	0	FLCN	intronic	NA
MB_Group4_T1--3	chr17:17117308	C	NA	172	0	172	36.837	3.747	0	0	0	168	0	FLCN	intronic	NA
MB_Group4_T1--4	chr17:17117308	C	A	14	0.214	11	38.636	2.942	3	41.000	0.000	11	3	FLCN	intronic	NA
MB_Group4_T1--5	chr17:17117308	C	NA	109	0	109	36.413	3.975	0	0	0	107	0	FLCN	intronic	NA
MB_Group4_T1--6	chr17:17117308	C	NA	21	0	21	36.619	4.376	0	0	0	21	0	FLCN	intronic	NA
MB_Group4_T1--GL	chr17:17117308	C	NA	53	0	53	35.849	3.870	0	0	0	51	0	FLCN	intronic	NA
MB_Group4_T1--1	chr17:18233717	C	T	19	0.263	13	36.077	4.092	5	37.000	0.000	12	5	SHMT1	intronic	NA
MB_Group4_T1--2	chr17:18233717	C	NA	12	0	11	32.909	10.329	0	0	0	9	0	SHMT1	intronic	NA
MB_Group4_T1--3	chr17:18233717	C	T	89	0.079	79	36.937	3.275	7	37.429	1.134	77	7	SHMT1	intronic	NA
MB_Group4_T1--4	chr17:18233717	C	T	10	0.100	8	36.500	3.854	1	35.000	0.000	8	1	SHMT1	intronic	NA
MB_Group4_T1--5	chr17:18233717	C	T	58	0.121	50	36.840	6.022	7	36.714	2.138	47	7	SHMT1	intronic	NA
MB_Group4_T1--6	chr17:18233717	C	NA	11	0	11	37.091	2.948	0	0	0	11	0	SHMT1	intronic	NA
MB_Group4_T1--GL	chr17:18233717	C	NA	44	0	44	36.591	6.116	0	0	0	39	0	SHMT1	intronic	NA
MB_Group4_T1--1	chr17:27844399	G	A	13	0.231	10	39.300	2.312	3	37.000	0.000	10	3	TAOK1	intronic	NA
MB_Group4_T1--2	chr17:27844399	G	A	18	0.222	14	38.714	4.008	4	36.500	1.000	13	4	TAOK1	intronic	NA
MB_Group4_T1--3	chr17:27844399	G	A	51	0.020	50	38.640	2.562	1	37.000	0.000	49	1	TAOK1	intronic	NA
MB_Group4_T1--4	chr17:27844399	G	A	13	0.308	9	37.222	3.734	4	37.000	0.000	9	4	TAOK1	intronic	NA
MB_Group4_T1--5	chr17:27844399	G	A	49	0.143	41	37.488	4.960	7	36.000	1.915	38	7	TAOK1	intronic	NA
MB_Group4_T1--6	chr17:27844399	G	A	11	0.091	10	38.500	1.958	1	37.000	0.000	10	1	TAOK1	intronic	NA
MB_Group4_T1--GL	chr17:27844399	G	NA	44	0	44	38.068	2.984	0	0	0	44	0	TAOK1	intronic	NA
MB_Group4_T1--1	chr17:33288983	C	NA	44	0	44	37.091	4.414	0	0	0	42	0	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:33288983	C	NA	30	0	30	38.267	3.140	0	0	0	30	0	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:33288983	C	A	125	0.008	124	37.379	3.782	1	35.000	0.000	121	1	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:33288983	C	NA	29	0	29	38.172	5.217	0	0	0	27	0	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:33288983	C	A	54	0.167	45	36.867	4.429	9	36.000	6.042	44	8	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:33288983	C	NA	28	0	28	36.929	4.966	0	0	0	25	0	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:33288983	C	NA	96	0	96	37.417	4.303	0	0	0	92	0	ZNF830	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:3448056	C	T	26	0.192	21	37.810	7.236	5	36.800	1.095	20	5	TRPV3	intronic	NA
MB_Group4_T1--2	chr17:3448056	C	NA	21	0	21	37.905	3.129	0	0	0	21	0	TRPV3	intronic	NA
MB_Group4_T1--3	chr17:3448056	C	T	95	0.063	89	37.652	6.094	6	36.833	0.408	84	6	TRPV3	intronic	NA
MB_Group4_T1--4	chr17:3448056	C	T	14	0.214	11	36.000	8.222	3	37.000	0.000	10	3	TRPV3	intronic	NA
MB_Group4_T1--5	chr17:3448056	C	T	93	0.129	81	37.432	3.879	12	37.000	0.000	79	12	TRPV3	intronic	NA
MB_Group4_T1--6	chr17:3448056	C	T	19	0.105	17	36.647	8.000	2	37.000	0.000	16	2	TRPV3	intronic	NA
MB_Group4_T1--GL	chr17:3448056	C	NA	51	0	51	38.059	3.823	0	0	0	50	0	TRPV3	intronic	NA
MB_Group4_T1--1	chr17:3474859	C	NA	16	0	16	36.812	3.936	0	0	0	15	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:3474859	C	NA	18	0	18	37.389	3.517	0	0	0	17	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:3474859	C	NA	145	0	145	35.497	4.752	0	0	0	135	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:3474859	C	A	12	0.250	9	37.556	3.678	3	33.667	1.528	9	3	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:3474859	C	NA	89	0	89	35.225	5.925	0	0	0	81	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:3474859	C	NA	12	0	12	36.667	2.902	0	0	0	12	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:3474859	C	NA	68	0	68	35.368	4.989	0	0	0	63	0	TRPV1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:35914096	C	NA	47	0	47	37.447	3.961	0	0	0	46	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:35914096	C	NA	54	0	54	36.889	4.820	0	0	0	52	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:35914096	C	NA	91	0	91	37.560	3.709	0	0	0	88	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:35914096	C	A	17	0.176	14	35.857	5.216	3	37.000	6.928	12	2	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:35914096	C	NA	27	0	27	38.741	2.330	0	0	0	27	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:35914096	C	NA	31	0	31	35.742	5.905	0	0	0	28	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:35914096	C	NA	102	0	102	37.549	4.509	0	0	0	98	0	SYNRG	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:36358198	A	C	37	0.054	34	38.294	2.277	2	33.000	1.414	34	2	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--2	chr17:36358198	A	C	38	0.105	33	37.636	3.928	4	38.750	3.304	32	4	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--3	chr17:36358198	A	C	96	0.156	76	37.421	4.547	15	33.400	6.490	74	12	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--4	chr17:36358198	A	NA	22	0	22	38.136	2.624	0	0	0	22	0	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--5	chr17:36358198	A	C	36	0.139	31	37.484	3.767	5	35.600	3.362	29	5	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--6	chr17:36358198	A	C	25	0.080	23	38.000	2.780	2	36.500	0.707	23	2	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--GL	chr17:36358198	A	NA	92	0	89	37.315	4.105	0	0	0	84	0	LOC440434	ncRNA_intronic	NA
MB_Group4_T1--1	chr17:36485570	C	NA	45	0	45	36.222	3.642	0	0	0	41	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--2	chr17:36485570	C	NA	36	0	36	36.194	5.686	0	0	0	33	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--3	chr17:36485570	C	NA	193	0	191	35.770	4.810	0	0	0	177	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--4	chr17:36485570	C	A	22	0.182	18	35.889	3.924	4	33.500	7.141	16	3	GPR179	exonic	synonymous_SNV
MB_Group4_T1--5	chr17:36485570	C	NA	84	0	84	35.845	3.701	0	0	0	80	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--6	chr17:36485570	C	NA	33	0	33	35.424	3.808	0	0	0	31	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--GL	chr17:36485570	C	NA	120	0	120	35.233	4.726	0	0	0	110	0	GPR179	exonic	synonymous_SNV
MB_Group4_T1--1	chr17:36932334	T	C	39	0.359	25	37.680	3.412	14	36.000	2.148	24	14	PIP4K2B	intronic	NA
MB_Group4_T1--2	chr17:36932334	T	C	38	0.395	23	38.435	2.501	15	36.467	0.834	23	15	PIP4K2B	intronic	NA
MB_Group4_T1--3	chr17:36932334	T	C	48	0.208	38	38.395	3.072	10	36.400	0.966	38	10	PIP4K2B	intronic	NA
MB_Group4_T1--4	chr17:36932334	T	C	14	0.357	9	39.444	2.068	5	37.000	2.449	9	5	PIP4K2B	intronic	NA
MB_Group4_T1--5	chr17:36932334	T	C	49	0.408	29	38.724	3.011	20	36.950	1.146	28	20	PIP4K2B	intronic	NA
MB_Group4_T1--6	chr17:36932334	T	C	11	0.091	10	37.100	2.601	1	35.000	0.000	10	1	PIP4K2B	intronic	NA
MB_Group4_T1--GL	chr17:36932334	T	NA	37	0	37	37.189	5.338	0	0	0	34	0	PIP4K2B	intronic	NA
MB_Group4_T1--1	chr17:36932336	G	A	39	0.308	27	37.370	3.065	12	32.583	5.384	27	11	PIP4K2B	intronic	NA
MB_Group4_T1--2	chr17:36932336	G	A	38	0.316	24	37.625	3.033	12	34.083	1.621	24	12	PIP4K2B	intronic	NA
MB_Group4_T1--3	chr17:36932336	G	A	49	0.143	42	37.048	3.478	7	33.714	2.628	40	6	PIP4K2B	intronic	NA
MB_Group4_T1--4	chr17:36932336	G	A	14	0.286	10	36.700	4.762	4	29.250	7.136	9	3	PIP4K2B	intronic	NA
MB_Group4_T1--5	chr17:36932336	G	A	50	0.300	35	37.400	3.440	15	34.533	1.959	34	14	PIP4K2B	intronic	NA
MB_Group4_T1--6	chr17:36932336	G	NA	11	0	11	33.364	8.213	0	0	0	10	0	PIP4K2B	intronic	NA
MB_Group4_T1--GL	chr17:36932336	G	NA	37	0	37	36.432	5.347	0	0	0	34	0	PIP4K2B	intronic	NA
MB_Group4_T1--1	chr17:37317509	C	NA	27	0	27	36.407	3.744	0	0	0	26	0	ARL5C	intronic	NA
MB_Group4_T1--2	chr17:37317509	C	NA	19	0	19	36.842	3.579	0	0	0	19	0	ARL5C	intronic	NA
MB_Group4_T1--3	chr17:37317509	C	A	104	0.010	103	36.845	4.779	1	37.000	0.000	100	1	ARL5C	intronic	NA
MB_Group4_T1--4	chr17:37317509	C	A	15	0.267	11	35.636	3.355	4	34.750	8.261	11	3	ARL5C	intronic	NA
MB_Group4_T1--5	chr17:37317509	C	NA	65	0	65	36.077	5.185	0	0	0	61	0	ARL5C	intronic	NA
MB_Group4_T1--6	chr17:37317509	C	NA	22	0	22	37.318	4.775	0	0	0	20	0	ARL5C	intronic	NA
MB_Group4_T1--GL	chr17:37317509	C	NA	45	0	45	36.467	5.442	0	0	0	42	0	ARL5C	intronic	NA
MB_Group4_T1--1	chr17:38937523	C	NA	33	0	33	38.152	2.623	0	0	0	32	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--2	chr17:38937523	C	NA	39	0	39	39.333	2.896	0	0	0	38	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--3	chr17:38937523	C	NA	52	0	52	38.808	2.124	0	0	0	52	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--4	chr17:38937523	C	NA	13	0	13	39.308	2.287	0	0	0	13	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--5	chr17:38937523	C	NA	41	0	41	38.122	3.219	0	0	0	40	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--6	chr17:38937523	C	A	22	0.182	18	39.722	1.638	4	39.000	2.160	18	4	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--GL	chr17:38937523	C	NA	43	0	43	38.233	5.065	0	0	0	42	0	KRT27(NM_181537:exon3:c.445-1G>T)	splicing	NA
MB_Group4_T1--1	chr17:39254298	T	C	39	0.205	31	36.290	3.057	8	33.250	6.692	30	7	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--2	chr17:39254298	T	C	52	0.058	49	36.571	3.189	3	35.667	1.155	48	3	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--3	chr17:39254298	T	C	152	0.020	149	37.201	3.472	3	37.000	0.000	144	3	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--4	chr17:39254298	T	C	18	0.056	17	36.941	2.609	1	35.000	0.000	17	1	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--5	chr17:39254298	T	C	83	0.120	73	36.575	3.822	10	35.500	2.799	71	9	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--6	chr17:39254298	T	C	31	0.129	27	37.148	2.996	4	35.750	0.957	27	4	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--GL	chr17:39254298	T	NA	56	0	56	37.339	3.450	0	0	0	55	0	KRTAP4-8	exonic	synonymous_SNV
MB_Group4_T1--1	chr17:39258007	G	C	48	0.229	37	36.541	5.037	11	36.091	1.375	36	11	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--2	chr17:39258007	G	C	42	0.119	37	36.595	4.400	5	31.800	8.927	35	4	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--3	chr17:39258007	G	C	196	0.056	185	36.086	4.919	11	36.455	0.934	175	11	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--4	chr17:39258007	G	C	34	0.059	32	36.594	3.518	2	37.000	0.000	31	2	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--5	chr17:39258007	G	C	107	0.168	89	36.461	4.232	18	34.944	2.689	86	18	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--6	chr17:39258007	G	NA	21	0	21	34.000	5.604	0	0	0	17	0	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--GL	chr17:39258007	G	NA	81	0	81	36.654	4.010	0	0	0	75	0	KRTAP4-8(dist=3632),KRTAP4-9(dist=3634)	intergenic	NA
MB_Group4_T1--1	chr17:39261648	G	A	30	0.100	27	37.630	3.224	3	37.000	0.000	26	3	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:39261648	G	A	27	0.222	21	38.238	2.827	6	36.667	0.816	21	6	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:39261648	G	A	146	0.034	141	36.943	4.311	5	37.000	0.000	137	5	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:39261648	G	NA	16	0	16	36.562	3.265	0	0	0	16	0	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:39261648	G	A	98	0.071	91	36.231	4.367	7	37.286	0.756	86	7	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:39261648	G	A	17	0.118	15	38.467	2.875	2	36.000	1.414	15	2	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:39261648	G	NA	38	0	38	36.868	3.750	0	0	0	37	0	KRTAP4-9	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:40003979	G	NA	11	0	10	36.800	3.824	0	0	0	9	0	KLHL10	intronic	NA
MB_Group4_T1--2	chr17:40003979	G	NA	21	0	21	35.476	6.947	0	0	0	19	0	KLHL10	intronic	NA
MB_Group4_T1--3	chr17:40003979	G	A	75	0.027	73	37.699	4.268	2	37.000	0.000	69	2	KLHL10	intronic	NA
MB_Group4_T1--4	chr17:40003979	G	A	12	0.083	11	35.818	4.895	1	37.000	0.000	10	1	KLHL10	intronic	NA
MB_Group4_T1--5	chr17:40003979	G	A	47	0.170	39	35.590	6.847	8	36.000	1.773	33	8	KLHL10	intronic	NA
MB_Group4_T1--6	chr17:40003979	G	NA	19	0	19	37.526	4.047	0	0	0	18	0	KLHL10	intronic	NA
MB_Group4_T1--GL	chr17:40003979	G	NA	34	0	34	36.059	4.249	0	0	0	31	0	KLHL10	intronic	NA
MB_Group4_T1--1	chr17:40004018	G	A	16	0.125	14	39.000	2.038	2	37.000	0.000	14	2	KLHL10	intronic	NA
MB_Group4_T1--2	chr17:40004018	G	A	23	0.043	22	37.500	2.632	1	37.000	0.000	22	1	KLHL10	intronic	NA
MB_Group4_T1--3	chr17:40004018	G	A	90	0.011	89	38.382	3.462	1	39.000	0.000	88	1	KLHL10	intronic	NA
MB_Group4_T1--4	chr17:40004018	G	NA	15	0	15	36.800	3.121	0	0	0	15	0	KLHL10	intronic	NA
MB_Group4_T1--5	chr17:40004018	G	A	55	0.145	47	37.213	4.462	8	37.000	0.000	44	8	KLHL10	intronic	NA
MB_Group4_T1--6	chr17:40004018	G	NA	20	0	19	38.316	2.689	0	0	0	19	0	KLHL10	intronic	NA
MB_Group4_T1--GL	chr17:40004018	G	NA	36	0	36	37.806	2.692	0	0	0	36	0	KLHL10	intronic	NA
MB_Group4_T1--1	chr17:40173976	C	T	12	0.083	11	37.182	2.639	1	37.000	0.000	11	1	NKIRAS2	intronic	NA
MB_Group4_T1--2	chr17:40173976	C	T	31	0.258	23	36.783	4.776	8	36.750	0.707	21	8	NKIRAS2	intronic	NA
MB_Group4_T1--3	chr17:40173976	C	T	89	0.090	81	36.864	4.942	8	35.750	2.816	75	7	NKIRAS2	intronic	NA
MB_Group4_T1--4	chr17:40173976	C	T	14	0.429	8	35.625	3.926	6	37.000	0.000	8	6	NKIRAS2	intronic	NA
MB_Group4_T1--5	chr17:40173976	C	T	95	0.189	77	37.091	4.519	18	36.611	1.720	73	18	NKIRAS2	intronic	NA
MB_Group4_T1--6	chr17:40173976	C	T	11	0.273	8	36.500	4.036	3	36.333	1.155	7	3	NKIRAS2	intronic	NA
MB_Group4_T1--GL	chr17:40173976	C	NA	39	0	39	38.000	2.819	0	0	0	39	0	NKIRAS2	intronic	NA
MB_Group4_T1--1	chr17:40173977	G	C	12	0.250	9	37.000	2.872	3	37.000	0.000	9	3	NKIRAS2	intronic	NA
MB_Group4_T1--2	chr17:40173977	G	C	29	0.345	19	36.842	7.259	10	36.300	1.494	17	10	NKIRAS2	intronic	NA
MB_Group4_T1--3	chr17:40173977	G	C	89	0.090	81	36.864	5.277	8	36.500	0.926	73	8	NKIRAS2	intronic	NA
MB_Group4_T1--4	chr17:40173977	G	C	13	0.462	7	36.714	3.638	6	36.667	0.816	7	6	NKIRAS2	intronic	NA
MB_Group4_T1--5	chr17:40173977	G	C	95	0.242	71	37.296	3.882	23	36.826	2.015	67	23	NKIRAS2	intronic	NA
MB_Group4_T1--6	chr17:40173977	G	C	11	0.273	8	37.500	3.071	3	37.000	0.000	8	3	NKIRAS2	intronic	NA
MB_Group4_T1--GL	chr17:40173977	G	NA	39	0	39	38.051	2.585	0	0	0	39	0	NKIRAS2	intronic	NA
MB_Group4_T1--1	chr17:40468484	A	G	32	0.250	24	37.250	4.183	8	34.625	2.722	23	8	STAT3	intronic	NA
MB_Group4_T1--2	chr17:40468484	A	G	36	0.083	31	37.065	5.354	3	35.000	1.732	29	3	STAT3	intronic	NA
MB_Group4_T1--3	chr17:40468484	A	G	135	0.044	129	35.930	5.551	6	34.333	3.204	118	6	STAT3	intronic	NA
MB_Group4_T1--4	chr17:40468484	A	G	14	0.214	11	34.091	6.300	3	35.667	2.887	10	3	STAT3	intronic	NA
MB_Group4_T1--5	chr17:40468484	A	G	93	0.129	81	35.667	5.182	12	31.417	7.379	73	10	STAT3	intronic	NA
MB_Group4_T1--6	chr17:40468484	A	G	23	0.087	21	34.476	7.153	2	32.500	2.121	19	2	STAT3	intronic	NA
MB_Group4_T1--GL	chr17:40468484	A	NA	60	0	60	36.917	3.797	0	0	0	58	0	STAT3	intronic	NA
MB_Group4_T1--1	chr17:40468488	C	G	34	0.176	28	37.679	3.611	6	35.000	4.899	27	5	STAT3	intronic	NA
MB_Group4_T1--2	chr17:40468488	C	G	39	0.026	36	36.194	6.641	1	37.000	0.000	33	1	STAT3	intronic	NA
MB_Group4_T1--3	chr17:40468488	C	G	137	0.015	134	37.231	4.167	2	37.000	0.000	130	2	STAT3	intronic	NA
MB_Group4_T1--4	chr17:40468488	C	G	17	0.059	15	37.867	3.182	1	37.000	0.000	15	1	STAT3	intronic	NA
MB_Group4_T1--5	chr17:40468488	C	G	99	0.081	88	37.591	3.372	8	31.875	8.935	86	6	STAT3	intronic	NA
MB_Group4_T1--6	chr17:40468488	C	G	25	0.080	21	35.381	5.852	2	37.000	0.000	19	2	STAT3	intronic	NA
MB_Group4_T1--GL	chr17:40468488	C	NA	59	0	59	37.627	4.638	0	0	0	58	0	STAT3	intronic	NA
MB_Group4_T1--1	chr17:40856533	C	T	13	0.385	8	37.750	2.605	5	33.400	2.510	8	5	EZH1	intronic	NA
MB_Group4_T1--2	chr17:40856533	C	T	18	0.056	17	34.706	7.131	1	34.000	0.000	16	1	EZH1	intronic	NA
MB_Group4_T1--3	chr17:40856533	C	T	78	0.103	70	36.200	5.391	8	34.000	2.268	65	8	EZH1	intronic	NA
MB_Group4_T1--4	chr17:40856533	C	NA	10	0	10	38.400	3.688	0	0	0	10	0	EZH1	intronic	NA
MB_Group4_T1--5	chr17:40856533	C	T	61	0.262	45	36.267	4.905	16	35.062	2.351	41	15	EZH1	intronic	NA
MB_Group4_T1--6	chr17:40856533	C	T	13	0.231	10	39.300	2.058	3	35.000	1.732	10	3	EZH1	intronic	NA
MB_Group4_T1--GL	chr17:40856533	C	NA	33	0	33	36.909	3.660	0	0	0	32	0	EZH1	intronic	NA
MB_Group4_T1--1	chr17:40856535	T	C	13	0.385	8	36.500	4.175	5	35.600	3.130	7	5	EZH1	intronic	NA
MB_Group4_T1--2	chr17:40856535	T	C	16	0.062	15	36.200	5.967	1	37.000	0.000	14	1	EZH1	intronic	NA
MB_Group4_T1--3	chr17:40856535	T	C	78	0.103	70	36.786	3.912	8	36.750	0.707	66	8	EZH1	intronic	NA
MB_Group4_T1--4	chr17:40856535	T	NA	10	0	10	36.400	4.115	0	0	0	9	0	EZH1	intronic	NA
MB_Group4_T1--5	chr17:40856535	T	C	61	0.262	44	35.727	5.824	16	36.000	1.751	37	16	EZH1	intronic	NA
MB_Group4_T1--6	chr17:40856535	T	C	13	0.231	10	39.000	1.155	3	37.000	0.000	10	3	EZH1	intronic	NA
MB_Group4_T1--GL	chr17:40856535	T	NA	33	0	33	35.939	6.647	0	0	0	30	0	EZH1	intronic	NA
MB_Group4_T1--1	chr17:40945934	G	A	43	0.047	40	33.600	5.821	2	38.000	1.414	35	2	WNK4	intronic	NA
MB_Group4_T1--2	chr17:40945934	G	A	56	0.143	48	35.562	4.187	8	38.250	0.886	45	8	WNK4	intronic	NA
MB_Group4_T1--3	chr17:40945934	G	A	80	0.050	76	35.079	3.265	4	38.500	1.000	72	4	WNK4	intronic	NA
MB_Group4_T1--4	chr17:40945934	G	A	13	0.462	7	30.286	8.616	6	37.833	1.941	5	6	WNK4	intronic	NA
MB_Group4_T1--5	chr17:40945934	G	A	128	0.094	113	35.106	4.321	12	37.083	3.919	102	11	WNK4	intronic	NA
MB_Group4_T1--6	chr17:40945934	G	A	32	0.125	28	35.500	3.564	4	37.000	2.828	26	4	WNK4	intronic	NA
MB_Group4_T1--GL	chr17:40945934	G	NA	45	0	45	34.400	6.659	0	0	0	40	0	WNK4	intronic	NA
MB_Group4_T1--1	chr17:40945939	C	T	40	0.050	38	33.105	5.917	2	34.500	3.536	31	2	WNK4	intronic	NA
MB_Group4_T1--2	chr17:40945939	C	T	50	0.140	42	34.310	6.513	7	37.000	0.000	36	7	WNK4	intronic	NA
MB_Group4_T1--3	chr17:40945939	C	T	75	0.040	71	34.042	6.128	3	37.000	0.000	60	3	WNK4	intronic	NA
MB_Group4_T1--4	chr17:40945939	C	T	13	0.462	7	34.571	2.149	6	36.333	1.633	7	6	WNK4	intronic	NA
MB_Group4_T1--5	chr17:40945939	C	T	116	0.095	103	34.447	5.252	11	36.818	1.079	86	11	WNK4	intronic	NA
MB_Group4_T1--6	chr17:40945939	C	T	28	0.071	26	34.308	7.104	2	36.000	1.414	21	2	WNK4	intronic	NA
MB_Group4_T1--GL	chr17:40945939	C	NA	43	0	43	34.860	6.197	0	0	0	40	0	WNK4	intronic	NA
MB_Group4_T1--1	chr17:41155077	A	T	30	0.300	21	36.571	5.381	9	35.222	2.048	19	9	RPL27	downstream	NA
MB_Group4_T1--2	chr17:41155077	A	T	24	0.208	19	37.211	3.881	5	36.200	1.789	18	5	RPL27	downstream	NA
MB_Group4_T1--3	chr17:41155077	A	NA	79	0	79	37.139	3.594	0	0	0	77	0	RPL27	downstream	NA
MB_Group4_T1--4	chr17:41155077	A	T	10	0.300	7	37.000	3.512	3	37.000	0.000	7	3	RPL27	downstream	NA
MB_Group4_T1--5	chr17:41155077	A	T	62	0.032	60	36.450	4.880	2	35.000	2.828	55	2	RPL27	downstream	NA
MB_Group4_T1--6	chr17:41155077	A	T	16	0.250	12	37.250	5.048	4	35.000	2.828	11	4	RPL27	downstream	NA
MB_Group4_T1--GL	chr17:41155077	A	NA	38	0	38	37.053	3.792	0	0	0	37	0	RPL27	downstream	NA
MB_Group4_T1--1	chr17:4199935	C	NA	22	0	22	37.545	6.773	0	0	0	21	0	UBE2G1	intronic	NA
MB_Group4_T1--2	chr17:4199935	C	NA	27	0	27	38.667	2.703	0	0	0	27	0	UBE2G1	intronic	NA
MB_Group4_T1--3	chr17:4199935	C	NA	46	0	46	38.500	3.312	0	0	0	45	0	UBE2G1	intronic	NA
MB_Group4_T1--4	chr17:4199935	C	A	20	0.200	16	37.500	3.633	4	35.000	6.880	16	3	UBE2G1	intronic	NA
MB_Group4_T1--5	chr17:4199935	C	NA	25	0	25	38.960	2.371	0	0	0	25	0	UBE2G1	intronic	NA
MB_Group4_T1--6	chr17:4199935	C	NA	25	0	25	38.480	3.664	0	0	0	24	0	UBE2G1	intronic	NA
MB_Group4_T1--GL	chr17:4199935	C	NA	69	0	69	38.348	4.211	0	0	0	66	0	UBE2G1	intronic	NA
MB_Group4_T1--1	chr17:43587462	C	T	19	0.053	17	34.765	7.645	1	35.000	0.000	16	1	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--2	chr17:43587462	C	T	14	0.071	13	38.000	2.646	1	37.000	0.000	13	1	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--3	chr17:43587462	C	T	74	0.027	71	37.085	5.288	2	37.000	0.000	67	2	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--4	chr17:43587462	C	NA	14	0	14	38.500	2.442	0	0	0	14	0	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--5	chr17:43587462	C	T	39	0.308	26	36.885	4.283	12	36.167	1.528	24	12	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--6	chr17:43587462	C	NA	10	0	10	37.400	2.633	0	0	0	10	0	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--GL	chr17:43587462	C	NA	55	0	55	38.509	2.638	0	0	0	55	0	LRRC37A4P	ncRNA_intronic	NA
MB_Group4_T1--1	chr1:75198981	C	NA	36	0	36	36.833	3.238	0	0	0	36	0	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:75198981	C	A	30	0.033	29	35.862	3.056	1	34.000	0.000	28	1	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:75198981	C	NA	72	0	72	34.792	4.525	0	0	0	66	0	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:75198981	C	A	13	0.231	10	35.600	2.757	3	35.000	4.000	9	3	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:75198981	C	NA	45	0	45	34.311	5.571	0	0	0	39	0	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:75198981	C	NA	12	0	12	36.917	2.644	0	0	0	12	0	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:75198981	C	NA	61	0	61	34.541	4.403	0	0	0	57	0	TYW3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:56797958	G	C	27	0.037	26	37.808	4.138	1	37.000	0.000	25	1	RAD51C	intronic	NA
MB_Group4_T1--2	chr17:56797958	G	C	23	0.130	20	38.400	2.963	3	35.333	2.887	20	3	RAD51C	intronic	NA
MB_Group4_T1--3	chr17:56797958	G	C	72	0.028	69	37.884	3.341	2	34.500	3.536	68	2	RAD51C	intronic	NA
MB_Group4_T1--4	chr17:56797958	G	NA	18	0	18	36.667	3.125	0	0	0	18	0	RAD51C	intronic	NA
MB_Group4_T1--5	chr17:56797958	G	C	50	0.200	36	36.861	4.402	10	36.400	2.119	33	10	RAD51C	intronic	NA
MB_Group4_T1--6	chr17:56797958	G	C	13	0.077	12	38.167	2.290	1	37.000	0.000	12	1	RAD51C	intronic	NA
MB_Group4_T1--GL	chr17:56797958	G	NA	64	0	64	37.766	3.866	0	0	0	63	0	RAD51C	intronic	NA
MB_Group4_T1--1	chr17:56797959	G	A	27	0.037	26	37.615	4.508	1	37.000	0.000	24	1	RAD51C	intronic	NA
MB_Group4_T1--2	chr17:56797959	G	A	23	0.130	20	38.500	2.743	3	36.333	1.155	20	3	RAD51C	intronic	NA
MB_Group4_T1--3	chr17:56797959	G	A	72	0.028	70	37.414	4.151	2	31.500	7.778	66	1	RAD51C	intronic	NA
MB_Group4_T1--4	chr17:56797959	G	NA	18	0	18	36.500	3.185	0	0	0	18	0	RAD51C	intronic	NA
MB_Group4_T1--5	chr17:56797959	G	A	52	0.173	43	37.186	3.788	9	36.000	2.345	41	9	RAD51C	intronic	NA
MB_Group4_T1--6	chr17:56797959	G	A	13	0.077	12	37.917	2.811	1	35.000	0.000	12	1	RAD51C	intronic	NA
MB_Group4_T1--GL	chr17:56797959	G	NA	64	0	64	37.797	4.480	0	0	0	61	0	RAD51C	intronic	NA
MB_Group4_T1--1	chr17:57937807	C	A	28	0.107	25	37.800	7.719	3	25.000	17.321	23	2	TUBD1	intronic	NA
MB_Group4_T1--2	chr17:57937807	C	NA	24	0	23	34.826	10.819	0	0	0	19	0	TUBD1	intronic	NA
MB_Group4_T1--3	chr17:57937807	C	A	45	0.044	43	36.256	7.715	2	34.000	4.243	38	2	TUBD1	intronic	NA
MB_Group4_T1--4	chr17:57937807	C	A	16	0.125	14	34.357	8.335	2	33.000	0.000	11	2	TUBD1	intronic	NA
MB_Group4_T1--5	chr17:57937807	C	NA	23	0	23	36.609	6.294	0	0	0	21	0	TUBD1	intronic	NA
MB_Group4_T1--6	chr17:57937807	C	A	14	0.286	10	34.300	12.047	4	27.500	15.000	8	3	TUBD1	intronic	NA
MB_Group4_T1--GL	chr17:57937807	C	NA	58	0	56	34.661	11.103	0	0	0	46	0	TUBD1	intronic	NA
MB_Group4_T1--1	chr17:59886175	C	NA	38	0	38	37.737	3.160	0	0	0	37	0	BRIP1	intronic	NA
MB_Group4_T1--2	chr17:59886175	C	NA	18	0	18	37.833	3.294	0	0	0	18	0	BRIP1	intronic	NA
MB_Group4_T1--3	chr17:59886175	C	NA	63	0	63	38.365	2.749	0	0	0	63	0	BRIP1	intronic	NA
MB_Group4_T1--4	chr17:59886175	C	NA	24	0	24	38.250	3.124	0	0	0	24	0	BRIP1	intronic	NA
MB_Group4_T1--5	chr17:59886175	C	NA	15	0	15	37.333	4.271	0	0	0	14	0	BRIP1	intronic	NA
MB_Group4_T1--6	chr17:59886175	C	A	16	0.250	12	37.333	3.085	4	38.250	2.630	12	4	BRIP1	intronic	NA
MB_Group4_T1--GL	chr17:59886175	C	NA	42	0	42	37.524	3.903	0	0	0	40	0	BRIP1	intronic	NA
MB_Group4_T1--1	chr1:76269455	C	NA	20	0	20	37.000	2.248	0	0	0	20	0	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:76269455	C	NA	21	0	21	38.143	2.780	0	0	0	21	0	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:76269455	C	NA	18	0	18	37.111	2.610	0	0	0	18	0	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:76269455	C	A	17	0.176	14	37.429	3.251	3	38.000	2.646	14	3	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:76269455	C	A	11	0.091	10	32.900	9.515	1	35.000	0.000	8	1	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:76269455	C	NA	10	0	10	37.500	3.536	0	0	0	10	0	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:76269455	C	NA	40	0	40	36.425	3.948	0	0	0	39	0	MSH4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:66972062	C	NA	44	0	44	38.250	2.571	0	0	0	44	0	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:66972062	C	NA	42	0	42	36.762	4.349	0	0	0	39	0	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:66972062	C	A	85	0.012	84	36.905	4.559	1	38.000	0.000	79	1	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:66972062	C	NA	26	0	26	36.923	4.578	0	0	0	24	0	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:66972062	C	A	18	0.167	15	36.267	7.704	3	37.333	3.512	14	3	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:66972062	C	NA	15	0	15	38.667	3.177	0	0	0	15	0	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:66972062	C	NA	77	0	77	37.117	3.602	0	0	0	74	0	ABCA9	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:73265484	C	NA	68	0	68	37.103	4.140	0	0	0	65	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:73265484	C	NA	40	0	40	36.600	3.678	0	0	0	37	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:73265484	C	NA	140	0	140	37.329	3.163	0	0	0	135	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:73265484	C	NA	24	0	24	37.000	4.232	0	0	0	23	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:73265484	C	A	145	0.145	124	36.629	4.491	21	35.714	4.818	116	19	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:73265484	C	NA	25	0	25	37.200	3.416	0	0	0	25	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:73265484	C	NA	94	0	94	37.053	3.465	0	0	0	91	0	MIF4GD	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:73620119	T	NA	35	0	35	35.914	3.981	0	0	0	33	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--2	chr17:73620119	T	NA	23	0	23	36.826	2.725	0	0	0	23	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--3	chr17:73620119	T	NA	183	0	182	36.000	4.617	0	0	0	170	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--4	chr17:73620119	T	C	16	0.188	13	34.462	6.159	3	37.000	3.464	11	3	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--5	chr17:73620119	T	NA	147	0	147	35.748	3.945	0	0	0	140	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--6	chr17:73620119	T	NA	25	0	25	36.320	2.750	0	0	0	24	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--GL	chr17:73620119	T	NA	61	0	61	36.213	3.747	0	0	0	57	0	MYO15B	ncRNA_exonic	NA
MB_Group4_T1--1	chr17:73946150	A	G	20	0.150	17	35.353	3.552	3	35.333	2.887	16	3	ACOX1	intronic	NA
MB_Group4_T1--2	chr17:73946150	A	NA	21	0	21	36.810	3.829	0	0	0	20	0	ACOX1	intronic	NA
MB_Group4_T1--3	chr17:73946150	A	G	76	0.039	72	36.222	4.260	3	37.000	2.000	67	3	ACOX1	intronic	NA
MB_Group4_T1--4	chr17:73946150	A	G	10	0.100	8	36.375	5.290	1	37.000	0.000	7	1	ACOX1	intronic	NA
MB_Group4_T1--5	chr17:73946150	A	G	43	0.186	34	37.000	3.861	8	37.500	1.414	32	8	ACOX1	intronic	NA
MB_Group4_T1--6	chr17:73946150	A	NA	15	0	15	35.067	4.527	0	0	0	12	0	ACOX1	intronic	NA
MB_Group4_T1--GL	chr17:73946150	A	NA	39	0	39	35.949	3.568	0	0	0	38	0	ACOX1	intronic	NA
MB_Group4_T1--1	chr17:74158549	C	NA	34	0	34	38.176	2.645	0	0	0	34	0	RNF157	intronic	NA
MB_Group4_T1--2	chr17:74158549	C	NA	33	0	33	37.970	4.440	0	0	0	32	0	RNF157	intronic	NA
MB_Group4_T1--3	chr17:74158549	C	A	74	0.014	73	38.548	3.118	1	40.000	0.000	73	1	RNF157	intronic	NA
MB_Group4_T1--4	chr17:74158549	C	NA	19	0	19	38.684	4.295	0	0	0	18	0	RNF157	intronic	NA
MB_Group4_T1--5	chr17:74158549	C	NA	25	0	25	38.200	3.674	0	0	0	24	0	RNF157	intronic	NA
MB_Group4_T1--6	chr17:74158549	C	A	15	0.200	12	38.917	2.353	3	36.667	2.887	12	3	RNF157	intronic	NA
MB_Group4_T1--GL	chr17:74158549	C	NA	67	0	67	37.642	4.451	0	0	0	61	0	RNF157	intronic	NA
MB_Group4_T1--1	chr17:74288421	A	G	92	0.011	46	35.674	5.645	1	31.000	0.000	42	1	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:74288421	A	NA	72	0	46	36.174	3.178	0	0	0	44	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:74288421	A	G	736	0.314	471	35.376	5.313	231	36.697	4.992	422	221	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:74288421	A	G	52	0.365	30	35.667	4.420	19	33.737	7.497	26	16	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:74288421	A	NA	308	0	178	35.697	5.064	0	0	0	164	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:74288421	A	NA	62	0	39	36.308	3.968	0	0	0	37	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:74288421	A	NA	174	0	106	35.840	3.998	0	0	0	101	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:74288422	T	C	92	0.011	46	34.543	4.613	1	32.000	0.000	43	1	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr17:74288422	T	NA	71	0	45	33.933	5.557	0	0	0	40	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr17:74288422	T	C	731	0.367	462	33.574	6.436	268	35.478	5.534	382	244	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr17:74288422	T	C	52	0.423	30	33.100	5.628	22	35.318	2.679	25	21	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr17:74288422	T	NA	309	0	178	33.747	6.234	0	0	0	155	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr17:74288422	T	NA	62	0	39	33.538	7.419	0	0	0	34	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr17:74288422	T	NA	174	0	106	33.434	6.516	0	0	0	89	0	QRICH2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr17:7577746	A	G	22	0.136	19	34.316	4.547	3	34.667	4.041	16	3	TP53	intronic	NA
MB_Group4_T1--2	chr17:7577746	A	G	31	0.129	27	36.815	2.988	4	34.500	6.403	27	3	TP53	intronic	NA
MB_Group4_T1--3	chr17:7577746	A	G	100	0.120	88	35.784	4.916	12	36.417	1.084	81	12	TP53	intronic	NA
MB_Group4_T1--4	chr17:7577746	A	G	14	0.071	13	35.615	3.969	1	37.000	0.000	12	1	TP53	intronic	NA
MB_Group4_T1--5	chr17:7577746	A	G	100	0.280	72	35.028	5.760	28	36.393	1.663	67	28	TP53	intronic	NA
MB_Group4_T1--6	chr17:7577746	A	NA	17	0	17	33.765	8.385	0	0	0	15	0	TP53	intronic	NA
MB_Group4_T1--GL	chr17:7577746	A	NA	38	0	38	36.526	3.659	0	0	0	36	0	TP53	intronic	NA
MB_Group4_T1--1	chr17:76153832	T	G	26	0.654	9	35.222	5.585	17	35.706	1.863	8	17	C17orf99	intronic	NA
MB_Group4_T1--2	chr17:76153832	T	G	27	0.333	18	34.722	7.820	9	36.000	2.000	16	9	C17orf99	intronic	NA
MB_Group4_T1--3	chr17:76153832	T	G	84	0.024	81	35.309	5.064	2	36.000	1.414	73	2	C17orf99	intronic	NA
MB_Group4_T1--4	chr17:76153832	T	G	17	0.059	15	34.467	7.453	1	37.000	0.000	13	1	C17orf99	intronic	NA
MB_Group4_T1--5	chr17:76153832	T	G	105	0.124	90	36.356	4.555	13	34.231	7.518	87	12	C17orf99	intronic	NA
MB_Group4_T1--6	chr17:76153832	T	G	13	0.231	10	33.600	9.336	3	36.333	1.155	9	3	C17orf99	intronic	NA
MB_Group4_T1--GL	chr17:76153832	T	NA	44	0	44	36.227	3.728	0	0	0	41	0	C17orf99	intronic	NA
MB_Group4_T1--1	chr17:78343146	G	T	32	0.219	25	34.480	5.561	7	36.286	2.870	20	7	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--2	chr17:78343146	G	T	29	0.207	22	34.318	8.515	6	36.500	1.225	17	6	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--3	chr17:78343146	G	T	169	0.095	153	35.830	4.414	16	35.125	4.470	138	15	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--4	chr17:78343146	G	T	11	0.364	7	37.286	3.729	4	37.000	0.000	7	4	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--5	chr17:78343146	G	T	186	0.226	141	35.504	5.055	42	36.429	1.328	123	42	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--6	chr17:78343146	G	T	21	0.048	20	35.300	5.302	1	37.000	0.000	18	1	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--GL	chr17:78343146	G	NA	74	0	74	35.419	4.935	0	0	0	65	0	LOC100294362	ncRNA_intronic	NA
MB_Group4_T1--1	chr17:80274002	C	NA	48	0	47	33.979	2.707	0	0	0	45	0	CD7	intronic	NA
MB_Group4_T1--2	chr17:80274002	C	NA	47	0	47	35.681	3.156	0	0	0	45	0	CD7	intronic	NA
MB_Group4_T1--3	chr17:80274002	C	NA	326	0	325	34.243	4.410	0	0	0	299	0	CD7	intronic	NA
MB_Group4_T1--4	chr17:80274002	C	T	22	0.182	18	34.889	3.341	4	35.000	4.320	16	4	CD7	intronic	NA
MB_Group4_T1--5	chr17:80274002	C	NA	298	0	298	34.023	5.253	0	0	0	268	0	CD7	intronic	NA
MB_Group4_T1--6	chr17:80274002	C	NA	25	0	24	33.375	7.471	0	0	0	20	0	CD7	intronic	NA
MB_Group4_T1--GL	chr17:80274002	C	NA	121	0	120	33.000	5.587	0	0	0	105	0	CD7	intronic	NA
MB_Group4_T1--1	chr18:11610675	A	C	39	0.205	29	34.759	2.531	8	35.250	5.548	29	7	SLC35G4	downstream	NA
MB_Group4_T1--2	chr18:11610675	A	C	25	0.160	21	34.667	3.679	4	33.000	6.055	20	3	SLC35G4	downstream	NA
MB_Group4_T1--3	chr18:11610675	A	C	107	0.103	94	34.638	2.290	11	33.727	6.405	92	9	SLC35G4	downstream	NA
MB_Group4_T1--4	chr18:11610675	A	C	25	0.320	16	34.812	1.377	8	36.625	2.973	16	8	SLC35G4	downstream	NA
MB_Group4_T1--5	chr18:11610675	A	C	74	0.189	59	34.051	3.008	14	30.286	7.690	55	9	SLC35G4	downstream	NA
MB_Group4_T1--6	chr18:11610675	A	C	19	0.053	17	34.647	3.141	1	35.000	0.000	16	1	SLC35G4	downstream	NA
MB_Group4_T1--GL	chr18:11610675	A	NA	47	0	46	35.022	3.605	0	0	0	44	0	SLC35G4	downstream	NA
MB_Group4_T1--1	chr18:12353303	C	T	22	0.227	17	39.176	2.298	5	36.800	0.447	17	5	AFG3L2	intronic	NA
MB_Group4_T1--2	chr18:12353303	C	T	29	0.138	25	36.880	3.516	4	36.500	1.000	25	4	AFG3L2	intronic	NA
MB_Group4_T1--3	chr18:12353303	C	T	145	0.103	130	37.592	4.135	15	35.867	2.031	124	15	AFG3L2	intronic	NA
MB_Group4_T1--4	chr18:12353303	C	T	16	0.062	15	38.333	2.320	1	37.000	0.000	15	1	AFG3L2	intronic	NA
MB_Group4_T1--5	chr18:12353303	C	T	192	0.214	151	37.808	3.656	41	37.073	1.456	146	41	AFG3L2	intronic	NA
MB_Group4_T1--6	chr18:12353303	C	T	19	0.105	17	36.412	3.825	2	37.000	0.000	17	2	AFG3L2	intronic	NA
MB_Group4_T1--GL	chr18:12353303	C	NA	51	0	51	37.608	3.047	0	0	0	50	0	AFG3L2	intronic	NA
MB_Group4_T1--1	chr18:20586097	A	T	13	0.077	11	35.818	4.262	1	37.000	0.000	9	1	RBBP8	intronic	NA
MB_Group4_T1--2	chr18:20586097	A	T	18	0.278	12	36.000	3.191	5	37.000	0.000	11	5	RBBP8	intronic	NA
MB_Group4_T1--3	chr18:20586097	A	T	59	0.034	54	35.870	3.807	2	37.000	0.000	50	2	RBBP8	intronic	NA
MB_Group4_T1--4	chr18:20586097	A	NA	10	0	9	34.111	3.516	0	0	0	7	0	RBBP8	intronic	NA
MB_Group4_T1--5	chr18:20586097	A	T	88	0.125	66	36.348	5.101	11	36.636	1.963	63	11	RBBP8	intronic	NA
MB_Group4_T1--6	chr18:20586097	A	T	10	0.200	8	33.000	10.323	2	36.000	1.414	7	2	RBBP8	intronic	NA
MB_Group4_T1--GL	chr18:20586097	A	NA	43	0	43	34.535	7.667	0	0	0	38	0	RBBP8	intronic	NA
MB_Group4_T1--1	chr18:28662771	G	NA	33	0	33	36.333	6.003	0	0	0	30	0	DSC2	intronic	NA
MB_Group4_T1--2	chr18:28662771	G	A	26	0.077	24	36.458	5.485	2	34.500	4.950	23	2	DSC2	intronic	NA
MB_Group4_T1--3	chr18:28662771	G	A	71	0.028	69	38.188	3.482	2	38.000	1.414	67	2	DSC2	intronic	NA
MB_Group4_T1--4	chr18:28662771	G	A	17	0.235	13	37.692	3.011	4	37.000	2.449	13	4	DSC2	intronic	NA
MB_Group4_T1--5	chr18:28662771	G	A	74	0.081	68	37.088	5.972	6	35.333	3.830	63	6	DSC2	intronic	NA
MB_Group4_T1--6	chr18:28662771	G	A	16	0.062	15	36.400	4.032	1	34.000	0.000	14	1	DSC2	intronic	NA
MB_Group4_T1--GL	chr18:28662771	G	NA	51	0	51	37.431	4.410	0	0	0	48	0	DSC2	intronic	NA
MB_Group4_T1--1	chr18:28662793	A	G	44	0.091	39	37.179	3.363	4	37.500	1.000	38	4	DSC2	intronic	NA
MB_Group4_T1--2	chr18:28662793	A	G	45	0.222	35	37.114	3.763	10	37.500	2.550	34	10	DSC2	intronic	NA
MB_Group4_T1--3	chr18:28662793	A	G	92	0.011	91	37.626	3.086	1	37.000	0.000	89	1	DSC2	intronic	NA
MB_Group4_T1--4	chr18:28662793	A	G	28	0.071	26	38.154	3.574	2	37.000	0.000	25	2	DSC2	intronic	NA
MB_Group4_T1--5	chr18:28662793	A	G	92	0.043	88	35.898	7.980	4	37.000	0.000	80	4	DSC2	intronic	NA
MB_Group4_T1--6	chr18:28662793	A	G	24	0.083	22	37.727	3.641	2	37.000	0.000	21	2	DSC2	intronic	NA
MB_Group4_T1--GL	chr18:28662793	A	NA	52	0	52	37.885	4.386	0	0	0	49	0	DSC2	intronic	NA
MB_Group4_T1--1	chr18:2934150	C	A	14	0.429	8	39.000	2.330	6	38.167	3.371	8	6	LPIN2	intronic	NA
MB_Group4_T1--2	chr18:2934150	C	A	12	0.083	11	37.273	5.081	1	35.000	0.000	10	1	LPIN2	intronic	NA
MB_Group4_T1--3	chr18:2934150	C	A	86	0.151	73	38.932	2.964	13	38.385	3.015	72	13	LPIN2	intronic	NA
MB_Group4_T1--4	chr18:2934150	C	NA	15	0	15	39.667	2.093	0	0	0	15	0	LPIN2	intronic	NA
MB_Group4_T1--5	chr18:2934150	C	NA	58	0	58	38.638	3.869	0	0	0	56	0	LPIN2	intronic	NA
MB_Group4_T1--6	chr18:2934150	C	NA	12	0	12	39.333	2.902	0	0	0	12	0	LPIN2	intronic	NA
MB_Group4_T1--GL	chr18:2934150	C	NA	44	0	43	38.326	4.116	0	0	0	42	0	LPIN2	intronic	NA
MB_Group4_T1--1	chr1:8422864	C	A	14	0.071	13	35.231	4.969	1	32.000	0.000	12	1	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:8422864	C	NA	16	0	16	36.688	2.845	0	0	0	16	0	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:8422864	C	A	122	0.008	121	36.116	4.424	1	37.000	0.000	118	1	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:8422864	C	A	10	0.300	7	35.429	4.577	3	37.000	3.464	6	3	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:8422864	C	NA	69	0	69	35.928	3.983	0	0	0	64	0	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:8422864	C	NA	12	0	12	37.167	3.433	0	0	0	12	0	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:8422864	C	NA	56	0	56	36.429	4.797	0	0	0	53	0	RERE	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:85575721	C	NA	21	0	21	38.667	2.576	0	0	0	21	0	WDR63	intronic	NA
MB_Group4_T1--2	chr1:85575721	C	NA	24	0	24	36.292	4.732	0	0	0	21	0	WDR63	intronic	NA
MB_Group4_T1--3	chr1:85575721	C	NA	41	0	41	37.829	3.420	0	0	0	40	0	WDR63	intronic	NA
MB_Group4_T1--4	chr1:85575721	C	A	14	0.214	11	35.636	3.931	3	36.000	3.464	10	3	WDR63	intronic	NA
MB_Group4_T1--5	chr1:85575721	C	NA	16	0	16	38.375	3.364	0	0	0	16	0	WDR63	intronic	NA
MB_Group4_T1--6	chr1:85575721	C	NA	12	0	12	38.667	3.085	0	0	0	12	0	WDR63	intronic	NA
MB_Group4_T1--GL	chr1:85575721	C	NA	40	0	40	37.975	2.966	0	0	0	40	0	WDR63	intronic	NA
MB_Group4_T1--1	chr18:6943602	T	C	23	0.478	12	38.333	3.172	11	37.909	2.700	12	11	LAMA1	intronic	NA
MB_Group4_T1--2	chr18:6943602	T	C	18	0.167	15	37.800	3.840	3	35.667	3.215	14	3	LAMA1	intronic	NA
MB_Group4_T1--3	chr18:6943602	T	C	85	0.188	69	37.913	3.429	16	38.250	1.183	66	16	LAMA1	intronic	NA
MB_Group4_T1--4	chr18:6943602	T	C	12	0.083	11	35.091	5.009	1	35.000	0.000	9	1	LAMA1	intronic	NA
MB_Group4_T1--5	chr18:6943602	T	C	86	0.221	67	36.567	6.448	19	37.632	2.385	62	19	LAMA1	intronic	NA
MB_Group4_T1--6	chr18:6943602	T	C	12	0.250	9	38.333	4.000	3	37.333	2.887	9	3	LAMA1	intronic	NA
MB_Group4_T1--GL	chr18:6943602	T	NA	43	0	43	38.302	3.870	0	0	0	42	0	LAMA1	intronic	NA
MB_Group4_T1--1	chr18:6943606	A	G	23	0.478	12	39.000	2.412	11	36.455	0.934	12	11	LAMA1	intronic	NA
MB_Group4_T1--2	chr18:6943606	A	G	17	0.176	14	38.357	3.201	3	33.333	6.351	14	2	LAMA1	intronic	NA
MB_Group4_T1--3	chr18:6943606	A	G	85	0.188	69	38.275	3.226	16	36.688	0.873	67	16	LAMA1	intronic	NA
MB_Group4_T1--4	chr18:6943606	A	G	12	0.083	11	36.091	4.657	1	37.000	0.000	9	1	LAMA1	intronic	NA
MB_Group4_T1--5	chr18:6943606	A	G	86	0.221	67	38.239	3.398	19	36.895	0.459	65	19	LAMA1	intronic	NA
MB_Group4_T1--6	chr18:6943606	A	G	11	0.182	9	38.111	3.723	2	37.000	0.000	9	2	LAMA1	intronic	NA
MB_Group4_T1--GL	chr18:6943606	A	NA	44	0	44	38.886	2.394	0	0	0	44	0	LAMA1	intronic	NA
MB_Group4_T1--1	chr18:6985985	T	C	26	0.038	25	36.680	4.922	1	37.000	0.000	24	1	LAMA1	intronic	NA
MB_Group4_T1--2	chr18:6985985	T	C	21	0.048	20	37.450	3.120	1	38.000	0.000	20	1	LAMA1	intronic	NA
MB_Group4_T1--3	chr18:6985985	T	C	112	0.071	104	37.702	4.430	8	37.000	1.069	101	8	LAMA1	intronic	NA
MB_Group4_T1--4	chr18:6985985	T	C	16	0.062	15	35.933	4.511	1	35.000	0.000	13	1	LAMA1	intronic	NA
MB_Group4_T1--5	chr18:6985985	T	C	72	0.153	60	36.350	5.370	11	36.455	1.635	57	11	LAMA1	intronic	NA
MB_Group4_T1--6	chr18:6985985	T	C	15	0.133	13	37.231	5.325	2	38.000	1.414	12	2	LAMA1	intronic	NA
MB_Group4_T1--GL	chr18:6985985	T	NA	56	0	56	36.750	4.188	0	0	0	52	0	LAMA1	intronic	NA
MB_Group4_T1--1	chr18:73000253	A	G	49	0.020	46	36.435	4.277	1	36.000	0.000	44	1	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr18:73000253	A	NA	29	0	29	36.931	2.840	0	0	0	29	0	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr18:73000253	A	G	235	0.221	183	35.279	5.515	52	36.346	3.965	165	49	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr18:73000253	A	NA	34	0	34	35.265	6.842	0	0	0	31	0	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr18:73000253	A	G	125	0.040	120	35.092	4.649	5	39.600	2.608	110	5	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr18:73000253	A	NA	26	0	26	35.346	4.409	0	0	0	23	0	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr18:73000253	A	NA	114	0	114	35.868	3.832	0	0	0	107	0	TSHZ1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr1:89732199	C	A	49	0.184	40	36.350	6.731	9	37.111	3.983	38	9	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr1:89732199	C	NA	48	0	48	37.312	3.697	0	0	0	46	0	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr1:89732199	C	NA	65	0	65	37.631	3.621	0	0	0	64	0	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr1:89732199	C	A	30	0.033	29	36.586	4.524	1	38.000	0.000	28	1	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr1:89732199	C	NA	19	0	19	37.421	3.948	0	0	0	18	0	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr1:89732199	C	NA	16	0	16	38.312	3.420	0	0	0	16	0	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr1:89732199	C	NA	82	0	82	37.134	4.537	0	0	0	78	0	GBP5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:15308311	A	G	25	0.160	21	35.667	3.411	4	35.500	6.807	19	3	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:15308311	A	NA	37	0	37	34.730	3.892	0	0	0	34	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:15308311	A	NA	158	0	158	36.165	4.642	0	0	0	151	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:15308311	A	NA	23	0	23	34.826	4.559	0	0	0	21	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:15308311	A	NA	115	0	115	34.574	6.301	0	0	0	103	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:15308311	A	NA	12	0	12	33.417	9.337	0	0	0	10	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:15308311	A	NA	73	0	73	35.986	4.188	0	0	0	68	0	NOTCH3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:16590203	C	T	35	0.143	30	32.933	9.336	5	36.600	0.894	24	5	CALR3	intronic	NA
MB_Group4_T1--2	chr19:16590203	C	T	18	0.222	14	36.357	4.199	4	34.750	2.062	12	4	CALR3	intronic	NA
MB_Group4_T1--3	chr19:16590203	C	T	92	0.022	90	34.844	6.292	2	37.000	0.000	72	2	CALR3	intronic	NA
MB_Group4_T1--4	chr19:16590203	C	T	18	0.167	15	37.600	5.343	3	33.333	4.726	13	2	CALR3	intronic	NA
MB_Group4_T1--5	chr19:16590203	C	T	61	0.180	50	33.920	7.216	11	36.455	1.293	41	11	CALR3	intronic	NA
MB_Group4_T1--6	chr19:16590203	C	NA	14	0	14	36.071	3.689	0	0	0	14	0	CALR3	intronic	NA
MB_Group4_T1--GL	chr19:16590203	C	NA	60	0	60	35.817	5.867	0	0	0	50	0	CALR3	intronic	NA
MB_Group4_T1--1	chr19:17884969	T	C	17	0.118	15	37.067	6.692	2	37.000	0.000	14	2	FCHO1	intronic	NA
MB_Group4_T1--2	chr19:17884969	T	C	14	0.214	10	38.200	5.940	3	37.000	0.000	9	3	FCHO1	intronic	NA
MB_Group4_T1--3	chr19:17884969	T	C	88	0.091	80	38.900	3.392	8	37.000	0.000	79	8	FCHO1	intronic	NA
MB_Group4_T1--4	chr19:17884969	T	NA	10	0	10	35.700	3.889	0	0	0	9	0	FCHO1	intronic	NA
MB_Group4_T1--5	chr19:17884969	T	C	71	0.197	57	39.386	2.169	14	34.929	7.364	57	13	FCHO1	intronic	NA
MB_Group4_T1--6	chr19:17884969	T	NA	13	0	13	35.769	5.019	0	0	0	12	0	FCHO1	intronic	NA
MB_Group4_T1--GL	chr19:17884969	T	NA	33	0	33	37.515	3.554	0	0	0	33	0	FCHO1	intronic	NA
MB_Group4_T1--1	chr19:19307638	T	C	25	0.040	24	35.250	3.429	1	35.000	0.000	23	1	RFXANK	intronic	NA
MB_Group4_T1--2	chr19:19307638	T	C	34	0.176	28	33.071	9.305	6	35.167	4.665	23	5	RFXANK	intronic	NA
MB_Group4_T1--3	chr19:19307638	T	C	201	0.015	198	34.899	5.259	3	37.000	0.000	178	3	RFXANK	intronic	NA
MB_Group4_T1--4	chr19:19307638	T	NA	23	0	23	34.217	3.464	0	0	0	21	0	RFXANK	intronic	NA
MB_Group4_T1--5	chr19:19307638	T	C	198	0.030	192	34.807	6.071	6	35.667	5.610	168	5	RFXANK	intronic	NA
MB_Group4_T1--6	chr19:19307638	T	C	25	0.080	23	36.652	3.284	2	38.500	2.121	22	2	RFXANK	intronic	NA
MB_Group4_T1--GL	chr19:19307638	T	NA	85	0	85	35.271	4.261	0	0	0	80	0	RFXANK	intronic	NA
MB_Group4_T1--1	chr19:2538032	G	A	18	0.056	17	34.941	5.573	1	37.000	0.000	15	1	GNG7	intronic	NA
MB_Group4_T1--2	chr19:2538032	G	A	32	0.250	24	34.375	8.622	8	37.250	0.707	19	8	GNG7	intronic	NA
MB_Group4_T1--3	chr19:2538032	G	A	94	0.011	93	36.516	4.056	1	37.000	0.000	87	1	GNG7	intronic	NA
MB_Group4_T1--4	chr19:2538032	G	A	15	0.067	14	35.000	6.725	1	37.000	0.000	13	1	GNG7	intronic	NA
MB_Group4_T1--5	chr19:2538032	G	A	77	0.065	72	34.903	6.077	5	31.800	11.967	65	4	GNG7	intronic	NA
MB_Group4_T1--6	chr19:2538032	G	NA	17	0	17	35.412	5.063	0	0	0	15	0	GNG7	intronic	NA
MB_Group4_T1--GL	chr19:2538032	G	NA	47	0	47	36.596	3.803	0	0	0	44	0	GNG7	intronic	NA
MB_Group4_T1--1	chr19:2875922	G	A	23	0.217	18	34.389	3.744	5	35.000	4.301	17	5	ZNF556	intronic	NA
MB_Group4_T1--2	chr19:2875922	G	A	26	0.038	25	36.160	3.804	1	35.000	0.000	24	1	ZNF556	intronic	NA
MB_Group4_T1--3	chr19:2875922	G	A	61	0.016	60	35.067	6.238	1	37.000	0.000	53	1	ZNF556	intronic	NA
MB_Group4_T1--4	chr19:2875922	G	A	10	0.100	9	28.778	12.008	1	39.000	0.000	5	1	ZNF556	intronic	NA
MB_Group4_T1--5	chr19:2875922	G	A	72	0.139	62	35.274	4.224	10	35.700	2.751	56	10	ZNF556	intronic	NA
MB_Group4_T1--6	chr19:2875922	G	A	11	0.182	9	35.444	2.920	2	33.000	8.485	9	1	ZNF556	intronic	NA
MB_Group4_T1--GL	chr19:2875922	G	NA	39	0	39	35.872	3.771	0	0	0	37	0	ZNF556	intronic	NA
MB_Group4_T1--1	chr19:33464701	T	C	12	0.083	11	34.818	5.564	1	37.000	0.000	10	1	C19orf40	intronic	NA
MB_Group4_T1--2	chr19:33464701	T	C	17	0.294	12	32.333	4.997	5	36.200	1.304	9	5	C19orf40	intronic	NA
MB_Group4_T1--3	chr19:33464701	T	C	50	0.040	47	33.106	7.106	2	37.000	0.000	39	2	C19orf40	intronic	NA
MB_Group4_T1--4	chr19:33464701	T	NA	12	0	12	32.750	3.596	0	0	0	10	0	C19orf40	intronic	NA
MB_Group4_T1--5	chr19:33464701	T	C	51	0.098	46	33.413	6.220	5	36.800	1.095	40	5	C19orf40	intronic	NA
MB_Group4_T1--6	chr19:33464701	T	C	11	0.091	10	35.000	3.018	1	37.000	0.000	9	1	C19orf40	intronic	NA
MB_Group4_T1--GL	chr19:33464701	T	NA	34	0	34	33.676	6.178	0	0	0	30	0	C19orf40	intronic	NA
MB_Group4_T1--1	chr19:36015873	G	NA	12	0	12	35.750	2.864	0	0	0	12	0	SBSN	intronic	NA
MB_Group4_T1--2	chr19:36015873	G	NA	21	0	21	35.333	4.810	0	0	0	20	0	SBSN	intronic	NA
MB_Group4_T1--3	chr19:36015873	G	NA	113	0	113	35.460	4.745	0	0	0	106	0	SBSN	intronic	NA
MB_Group4_T1--4	chr19:36015873	G	A	14	0.286	10	35.700	7.846	4	35.250	2.630	9	4	SBSN	intronic	NA
MB_Group4_T1--5	chr19:36015873	G	NA	62	0	62	35.452	5.072	0	0	0	58	0	SBSN	intronic	NA
MB_Group4_T1--6	chr19:36015873	G	NA	15	0	15	37.067	3.432	0	0	0	15	0	SBSN	intronic	NA
MB_Group4_T1--GL	chr19:36015873	G	NA	43	0	43	36.070	3.515	0	0	0	42	0	SBSN	intronic	NA
MB_Group4_T1--1	chr19:36167162	A	G	18	0.278	13	36.923	2.100	5	36.600	0.894	13	5	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:36167162	A	G	20	0.100	18	35.556	4.475	2	35.000	0.000	17	2	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:36167162	A	G	57	0.018	56	35.661	5.728	1	35.000	0.000	51	1	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:36167162	A	NA	14	0	14	35.286	5.254	0	0	0	13	0	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:36167162	A	G	63	0.190	51	36.333	5.588	12	36.833	0.577	48	12	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:36167162	A	G	10	0.200	8	35.125	3.720	2	23.500	19.092	7	1	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:36167162	A	NA	36	0	36	35.167	5.443	0	0	0	32	0	UPK1A	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:38385308	A	T	39	0.359	25	37.520	3.097	14	33.143	11.100	25	12	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:38385308	A	NA	46	0	46	36.891	4.498	0	0	0	43	0	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:38385308	A	T	157	0.019	153	35.974	5.469	3	34.667	5.033	141	3	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:38385308	A	NA	38	0	38	35.921	5.528	0	0	0	36	0	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:38385308	A	NA	46	0	46	35.957	3.812	0	0	0	43	0	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:38385308	A	NA	23	0	23	36.522	4.032	0	0	0	22	0	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:38385308	A	NA	123	0	123	35.642	5.720	0	0	0	114	0	WDR87	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:39214184	G	T	28	0.214	22	36.909	5.163	6	33.833	3.251	20	5	ACTN4	intronic	NA
MB_Group4_T1--2	chr19:39214184	G	T	26	0.038	25	36.680	3.363	1	39.000	0.000	25	1	ACTN4	intronic	NA
MB_Group4_T1--3	chr19:39214184	G	T	255	0.039	245	36.465	4.103	10	35.200	2.348	238	10	ACTN4	intronic	NA
MB_Group4_T1--4	chr19:39214184	G	NA	26	0	26	37.154	4.610	0	0	0	24	0	ACTN4	intronic	NA
MB_Group4_T1--5	chr19:39214184	G	NA	206	0	206	36.534	4.709	0	0	0	197	0	ACTN4	intronic	NA
MB_Group4_T1--6	chr19:39214184	G	NA	29	0	29	35.414	6.098	0	0	0	25	0	ACTN4	intronic	NA
MB_Group4_T1--GL	chr19:39214184	G	NA	124	0	124	36.952	4.640	0	0	0	118	0	ACTN4	intronic	NA
MB_Group4_T1--1	chr19:4168201	G	A	28	0.071	26	36.000	3.677	2	36.000	1.414	24	2	CREB3L3	intronic	NA
MB_Group4_T1--2	chr19:4168201	G	A	27	0.148	23	34.826	3.985	4	35.750	2.500	20	4	CREB3L3	intronic	NA
MB_Group4_T1--3	chr19:4168201	G	A	120	0.058	113	36.788	4.401	7	35.143	4.100	110	6	CREB3L3	intronic	NA
MB_Group4_T1--4	chr19:4168201	G	A	13	0.231	10	35.300	4.945	3	37.000	0.000	9	3	CREB3L3	intronic	NA
MB_Group4_T1--5	chr19:4168201	G	A	123	0.073	114	35.886	4.325	9	35.889	2.028	107	9	CREB3L3	intronic	NA
MB_Group4_T1--6	chr19:4168201	G	NA	12	0	12	37.250	4.224	0	0	0	11	0	CREB3L3	intronic	NA
MB_Group4_T1--GL	chr19:4168201	G	NA	61	0	61	35.541	5.104	0	0	0	57	0	CREB3L3	intronic	NA
MB_Group4_T1--1	chr19:42604005	C	NA	17	0	17	36.941	4.603	0	0	0	16	0	POU2F2	intronic	NA
MB_Group4_T1--2	chr19:42604005	C	NA	18	0	18	35.889	7.443	0	0	0	17	0	POU2F2	intronic	NA
MB_Group4_T1--3	chr19:42604005	C	NA	99	0	99	36.232	4.128	0	0	0	93	0	POU2F2	intronic	NA
MB_Group4_T1--4	chr19:42604005	C	NA	13	0	13	35.308	5.138	0	0	0	12	0	POU2F2	intronic	NA
MB_Group4_T1--5	chr19:42604005	C	NA	39	0	39	36.051	6.304	0	0	0	37	0	POU2F2	intronic	NA
MB_Group4_T1--6	chr19:42604005	C	A	12	0.250	9	38.444	2.555	3	35.000	4.000	9	3	POU2F2	intronic	NA
MB_Group4_T1--GL	chr19:42604005	C	NA	46	0	46	35.913	6.289	0	0	0	42	0	POU2F2	intronic	NA
MB_Group4_T1--1	chr19:43864403	A	T	38	0.158	32	35.906	5.101	6	34.500	2.665	30	6	CD177	intronic	NA
MB_Group4_T1--2	chr19:43864403	A	T	35	0.057	33	36.364	4.227	2	35.000	0.000	31	2	CD177	intronic	NA
MB_Group4_T1--3	chr19:43864403	A	T	140	0.057	132	36.652	3.172	8	33.375	3.889	129	7	CD177	intronic	NA
MB_Group4_T1--4	chr19:43864403	A	T	19	0.211	14	37.071	2.999	4	34.750	2.062	14	4	CD177	intronic	NA
MB_Group4_T1--5	chr19:43864403	A	NA	64	0	64	36.000	3.395	0	0	0	63	0	CD177	intronic	NA
MB_Group4_T1--6	chr19:43864403	A	T	13	0.077	12	34.500	8.765	1	37.000	0.000	11	1	CD177	intronic	NA
MB_Group4_T1--GL	chr19:43864403	A	NA	43	0	43	36.791	3.321	0	0	0	42	0	CD177	intronic	NA
MB_Group4_T1--1	chr19:43864537	C	T	35	0.200	28	36.464	4.639	7	37.857	2.268	26	7	CD177	exonic	unknown
MB_Group4_T1--2	chr19:43864537	C	NA	28	0	28	36.107	5.259	0	0	0	26	0	CD177	exonic	unknown
MB_Group4_T1--3	chr19:43864537	C	T	116	0.034	112	37.009	4.309	4	35.250	1.258	108	4	CD177	exonic	unknown
MB_Group4_T1--4	chr19:43864537	C	NA	12	0	12	34.833	5.024	0	0	0	11	0	CD177	exonic	unknown
MB_Group4_T1--5	chr19:43864537	C	NA	59	0	58	35.862	6.760	0	0	0	51	0	CD177	exonic	unknown
MB_Group4_T1--6	chr19:43864537	C	NA	11	0	11	38.818	3.371	0	0	0	11	0	CD177	exonic	unknown
MB_Group4_T1--GL	chr19:43864537	C	NA	49	0	49	36.551	3.943	0	0	0	48	0	CD177	exonic	unknown
MB_Group4_T1--1	chr19:44807622	C	NA	39	0	38	37.421	3.492	0	0	0	38	0	ZNF235	intronic	NA
MB_Group4_T1--2	chr19:44807622	C	A	21	0.190	17	39.412	2.671	4	38.000	3.464	17	4	ZNF235	intronic	NA
MB_Group4_T1--3	chr19:44807622	C	A	81	0.012	80	37.600	3.669	1	34.000	0.000	78	1	ZNF235	intronic	NA
MB_Group4_T1--4	chr19:44807622	C	NA	20	0	20	38.300	3.326	0	0	0	20	0	ZNF235	intronic	NA
MB_Group4_T1--5	chr19:44807622	C	NA	40	0	40	36.325	5.627	0	0	0	38	0	ZNF235	intronic	NA
MB_Group4_T1--6	chr19:44807622	C	A	16	0.062	15	36.867	6.105	1	41.000	0.000	13	1	ZNF235	intronic	NA
MB_Group4_T1--GL	chr19:44807622	C	NA	49	0	48	36.167	4.669	0	0	0	45	0	ZNF235	intronic	NA
MB_Group4_T1--1	chr19:48387123	T	G	24	0.250	18	35.056	8.578	6	36.333	1.633	14	6	SULT2A1	intronic	NA
MB_Group4_T1--2	chr19:48387123	T	G	23	0.217	18	37.889	3.008	5	36.200	1.095	18	5	SULT2A1	intronic	NA
MB_Group4_T1--3	chr19:48387123	T	G	108	0.167	90	39.456	2.137	18	34.000	7.776	90	16	SULT2A1	intronic	NA
MB_Group4_T1--4	chr19:48387123	T	G	15	0.200	12	38.500	3.451	3	37.000	0.000	11	3	SULT2A1	intronic	NA
MB_Group4_T1--5	chr19:48387123	T	G	110	0.300	76	38.171	3.686	33	36.242	2.586	73	31	SULT2A1	intronic	NA
MB_Group4_T1--6	chr19:48387123	T	G	21	0.286	15	39.200	2.678	6	37.000	0.000	15	6	SULT2A1	intronic	NA
MB_Group4_T1--GL	chr19:48387123	T	NA	34	0	34	38.294	4.563	0	0	0	33	0	SULT2A1	intronic	NA
MB_Group4_T1--1	chr19:49535480	A	C	53	0.321	36	37.139	2.800	17	36.882	2.088	36	17	CGB2	intronic	NA
MB_Group4_T1--2	chr19:49535480	A	C	56	0.357	36	36.083	4.391	20	35.750	3.567	33	18	CGB2	intronic	NA
MB_Group4_T1--3	chr19:49535480	A	C	230	0.035	222	36.914	3.967	8	36.000	1.512	215	8	CGB2	intronic	NA
MB_Group4_T1--4	chr19:49535480	A	C	26	0.038	25	34.760	4.711	1	37.000	0.000	23	1	CGB2	intronic	NA
MB_Group4_T1--5	chr19:49535480	A	C	267	0.097	240	36.404	4.870	26	36.885	0.816	228	26	CGB2	intronic	NA
MB_Group4_T1--6	chr19:49535480	A	C	30	0.167	25	36.440	4.001	5	36.000	4.848	24	4	CGB2	intronic	NA
MB_Group4_T1--GL	chr19:49535480	A	NA	47	0	47	37.702	3.563	0	0	0	46	0	CGB2	intronic	NA
MB_Group4_T1--1	chr19:49539606	C	G	88	0.205	70	35.143	6.747	18	36.611	2.146	63	18	CGB1	intronic	NA
MB_Group4_T1--2	chr19:49539606	C	G	113	0.257	84	35.571	5.235	29	36.069	2.219	76	29	CGB1	intronic	NA
MB_Group4_T1--3	chr19:49539606	C	G	377	0.037	363	37.421	3.352	14	36.571	1.158	357	14	CGB1	intronic	NA
MB_Group4_T1--4	chr19:49539606	C	G	40	0.275	28	34.536	5.160	11	37.091	1.136	25	11	CGB1	intronic	NA
MB_Group4_T1--5	chr19:49539606	C	G	379	0.140	326	36.804	4.296	53	36.679	0.915	313	53	CGB1	intronic	NA
MB_Group4_T1--6	chr19:49539606	C	G	40	0.075	37	37.108	3.871	3	36.667	0.577	36	3	CGB1	intronic	NA
MB_Group4_T1--GL	chr19:49539606	C	NA	78	0	78	37.128	5.327	0	0	0	73	0	CGB1	intronic	NA
MB_Group4_T1--1	chr19:49540034	C	G	78	0.077	72	34.986	5.409	6	34.500	3.332	67	5	CGB1	UTR5	NA
MB_Group4_T1--2	chr19:49540034	C	G	71	0.183	58	35.655	4.678	13	35.846	3.460	54	12	CGB1	UTR5	NA
MB_Group4_T1--3	chr19:49540034	C	G	260	0.038	249	35.751	4.490	10	36.800	0.632	230	10	CGB1	UTR5	NA
MB_Group4_T1--4	chr19:49540034	C	G	30	0.100	27	34.074	6.462	3	37.000	0.000	24	3	CGB1	UTR5	NA
MB_Group4_T1--5	chr19:49540034	C	G	238	0.092	215	35.572	4.739	22	36.591	2.384	197	21	CGB1	UTR5	NA
MB_Group4_T1--6	chr19:49540034	C	G	31	0.097	28	37.143	2.649	3	37.000	0.000	28	3	CGB1	UTR5	NA
MB_Group4_T1--GL	chr19:49540034	C	NA	67	0	67	36.328	4.810	0	0	0	61	0	CGB1	UTR5	NA
MB_Group4_T1--1	chr19:49993813	T	C	43	0.140	37	33.730	4.114	6	34.833	4.750	32	5	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:49993813	T	NA	50	0	50	33.840	6.680	0	0	0	42	0	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:49993813	T	C	304	0.039	292	35.024	5.236	12	36.667	3.499	261	12	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:49993813	T	NA	24	0	24	33.292	4.554	0	0	0	20	0	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:49993813	T	NA	201	0	201	34.522	5.106	0	0	0	178	0	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:49993813	T	NA	32	0	32	34.281	4.260	0	0	0	30	0	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:49993813	T	NA	100	0	100	35.180	4.937	0	0	0	90	0	RPL13A	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:50905222	C	A	19	0.158	16	33.375	7.667	3	37.667	4.163	14	3	POLD1	intronic	NA
MB_Group4_T1--2	chr19:50905222	C	NA	21	0	21	36.095	3.859	0	0	0	20	0	POLD1	intronic	NA
MB_Group4_T1--3	chr19:50905222	C	NA	203	0	203	35.399	5.379	0	0	0	186	0	POLD1	intronic	NA
MB_Group4_T1--4	chr19:50905222	C	NA	17	0	17	33.294	7.380	0	0	0	15	0	POLD1	intronic	NA
MB_Group4_T1--5	chr19:50905222	C	NA	146	0	145	35.883	4.242	0	0	0	137	0	POLD1	intronic	NA
MB_Group4_T1--6	chr19:50905222	C	NA	15	0	15	34.333	8.740	0	0	0	14	0	POLD1	intronic	NA
MB_Group4_T1--GL	chr19:50905222	C	NA	60	0	60	35.350	4.298	0	0	0	57	0	POLD1	intronic	NA
MB_Group4_T1--1	chr19:51920769	C	NA	27	0	27	35.852	3.427	0	0	0	26	0	SIGLEC10	intronic	NA
MB_Group4_T1--2	chr19:51920769	C	NA	17	0	16	38.000	2.921	0	0	0	16	0	SIGLEC10	intronic	NA
MB_Group4_T1--3	chr19:51920769	C	NA	128	0	128	35.055	3.921	0	0	0	120	0	SIGLEC10	intronic	NA
MB_Group4_T1--4	chr19:51920769	C	A	11	0.273	8	34.250	3.012	3	35.333	1.528	7	3	SIGLEC10	intronic	NA
MB_Group4_T1--5	chr19:51920769	C	NA	76	0	76	35.474	4.146	0	0	0	70	0	SIGLEC10	intronic	NA
MB_Group4_T1--6	chr19:51920769	C	NA	10	0	10	36.600	2.221	0	0	0	10	0	SIGLEC10	intronic	NA
MB_Group4_T1--GL	chr19:51920769	C	NA	48	0	48	34.771	5.203	0	0	0	46	0	SIGLEC10	intronic	NA
MB_Group4_T1--1	chr19:53762162	A	C	67	0.045	63	36.571	4.888	3	32.000	1.732	57	3	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--2	chr19:53762162	A	C	58	0.207	46	35.978	5.875	12	33.167	3.713	42	11	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--3	chr19:53762162	A	C	263	0.011	260	37.596	4.802	3	35.000	1.732	244	3	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--4	chr19:53762162	A	C	28	0.179	23	36.913	4.963	5	33.400	1.342	21	5	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--5	chr19:53762162	A	C	101	0.069	94	37.117	5.502	7	34.286	2.928	86	7	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--6	chr19:53762162	A	C	36	0.111	32	36.656	4.797	4	33.250	1.500	30	4	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr19:53762162	A	NA	94	0	94	37.979	4.000	0	0	0	93	0	VN1R2	exonic	synonymous_SNV
MB_Group4_T1--1	chr19:53762164	G	C	66	0.045	63	36.635	4.386	3	34.667	2.517	59	3	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:53762164	G	C	59	0.203	47	37.064	2.967	12	36.667	0.778	46	12	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:53762164	G	C	265	0.011	262	36.630	5.631	3	37.000	0.000	234	3	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:53762164	G	C	28	0.179	23	35.783	5.984	5	37.000	0.000	20	5	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:53762164	G	C	102	0.069	95	37.284	4.835	7	36.714	0.756	89	7	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:53762164	G	C	36	0.111	32	36.031	5.562	4	37.000	0.000	26	4	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:53762164	G	NA	94	0	94	37.351	4.244	0	0	0	89	0	VN1R2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:55451992	C	T	31	0.032	30	35.967	4.056	1	37.000	0.000	27	1	NLRP7	intronic	NA
MB_Group4_T1--2	chr19:55451992	C	T	41	0.146	34	36.676	4.036	6	36.000	1.673	33	6	NLRP7	intronic	NA
MB_Group4_T1--3	chr19:55451992	C	NA	173	0	172	35.576	5.670	0	0	0	156	0	NLRP7	intronic	NA
MB_Group4_T1--4	chr19:55451992	C	NA	17	0	17	32.647	10.130	0	0	0	14	0	NLRP7	intronic	NA
MB_Group4_T1--5	chr19:55451992	C	T	242	0.041	230	35.857	5.551	10	36.600	0.843	213	10	NLRP7	intronic	NA
MB_Group4_T1--6	chr19:55451992	C	T	26	0.038	25	35.320	5.329	1	37.000	0.000	22	1	NLRP7	intronic	NA
MB_Group4_T1--GL	chr19:55451992	C	NA	56	0	56	35.375	5.996	0	0	0	50	0	NLRP7	intronic	NA
MB_Group4_T1--1	chr19:55451993	A	G	31	0.065	29	36.793	4.169	2	36.000	1.414	28	2	NLRP7	intronic	NA
MB_Group4_T1--2	chr19:55451993	A	G	41	0.171	34	37.088	4.686	7	35.429	2.820	32	7	NLRP7	intronic	NA
MB_Group4_T1--3	chr19:55451993	A	NA	174	0	174	37.046	3.850	0	0	0	166	0	NLRP7	intronic	NA
MB_Group4_T1--4	chr19:55451993	A	G	17	0.059	16	34.062	6.340	1	37.000	0.000	13	1	NLRP7	intronic	NA
MB_Group4_T1--5	chr19:55451993	A	G	242	0.070	224	37.165	4.066	17	36.471	1.007	211	17	NLRP7	intronic	NA
MB_Group4_T1--6	chr19:55451993	A	G	26	0.038	25	37.240	2.712	1	37.000	0.000	25	1	NLRP7	intronic	NA
MB_Group4_T1--GL	chr19:55451993	A	NA	55	0	54	36.685	4.074	0	0	0	51	0	NLRP7	intronic	NA
MB_Group4_T1--1	chr19:5748976	A	G	21	0.238	16	36.000	5.177	5	36.200	2.588	15	5	CATSPERD	intronic	NA
MB_Group4_T1--2	chr19:5748976	A	G	20	0.100	18	35.667	4.393	2	34.000	4.243	15	2	CATSPERD	intronic	NA
MB_Group4_T1--3	chr19:5748976	A	G	64	0.031	62	36.145	4.991	2	38.000	1.414	56	2	CATSPERD	intronic	NA
MB_Group4_T1--4	chr19:5748976	A	G	11	0.182	9	35.889	4.400	2	34.500	6.364	8	2	CATSPERD	intronic	NA
MB_Group4_T1--5	chr19:5748976	A	G	90	0.222	70	35.914	5.919	20	36.850	2.961	66	20	CATSPERD	intronic	NA
MB_Group4_T1--6	chr19:5748976	A	G	13	0.077	12	37.417	2.610	1	39.000	0.000	12	1	CATSPERD	intronic	NA
MB_Group4_T1--GL	chr19:5748976	A	NA	47	0	47	35.660	3.846	0	0	0	43	0	CATSPERD	intronic	NA
MB_Group4_T1--1	chr19:618805	C	NA	31	0	31	36.613	3.694	0	0	0	29	0	POLRMT	intronic	NA
MB_Group4_T1--2	chr19:618805	C	NA	33	0	33	36.515	4.367	0	0	0	31	0	POLRMT	intronic	NA
MB_Group4_T1--3	chr19:618805	C	NA	216	0	216	36.093	4.603	0	0	0	204	0	POLRMT	intronic	NA
MB_Group4_T1--4	chr19:618805	C	T	12	0.250	9	33.222	10.232	3	39.000	3.464	8	3	POLRMT	intronic	NA
MB_Group4_T1--5	chr19:618805	C	NA	232	0	231	36.368	4.571	0	0	0	216	0	POLRMT	intronic	NA
MB_Group4_T1--6	chr19:618805	C	NA	25	0	25	37.000	3.512	0	0	0	24	0	POLRMT	intronic	NA
MB_Group4_T1--GL	chr19:618805	C	NA	63	0	63	37.032	3.436	0	0	0	62	0	POLRMT	intronic	NA
MB_Group4_T1--1	chr19:8555997	C	NA	41	0	41	34.878	3.648	0	0	0	38	0	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:8555997	C	NA	40	0	40	34.850	4.179	0	0	0	39	0	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:8555997	C	A	181	0.006	180	35.317	5.106	1	34.000	0.000	168	1	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:8555997	C	NA	13	0	13	35.308	2.213	0	0	0	13	0	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:8555997	C	A	148	0.209	117	34.256	6.003	31	34.806	3.260	105	29	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:8555997	C	NA	18	0	18	35.444	3.854	0	0	0	17	0	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:8555997	C	NA	93	0	93	35.419	3.604	0	0	0	89	0	PRAM1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:9065355	T	A	20	0.150	17	32.176	10.206	3	39.333	2.887	13	3	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:9065355	T	NA	18	0	18	33.222	7.345	0	0	0	16	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:9065355	T	NA	92	0	92	35.239	3.996	0	0	0	84	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:9065355	T	NA	14	0	14	32.000	8.199	0	0	0	10	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:9065355	T	NA	27	0	27	34.296	6.384	0	0	0	23	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:9065355	T	NA	22	0	22	35.773	2.707	0	0	0	22	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:9065355	T	NA	79	0	79	34.000	5.191	0	0	0	68	0	MUC16	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:9325005	G	A	86	0.070	80	36.788	3.113	6	35.333	1.366	78	6	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:9325005	G	A	83	0.048	79	36.772	3.382	4	29.000	12.728	77	3	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:9325005	G	A	278	0.058	261	36.858	3.195	16	35.562	1.999	254	16	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:9325005	G	A	50	0.040	48	37.312	2.730	2	35.500	2.121	48	2	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:9325005	G	A	191	0.209	151	36.828	3.671	40	33.925	4.885	150	37	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:9325005	G	A	65	0.031	63	36.635	4.323	2	33.000	2.828	60	2	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:9325005	G	NA	173	0	173	36.798	3.242	0	0	0	168	0	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:9325007	G	A	88	0.068	81	36.086	3.848	6	35.333	1.366	77	6	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--2	chr19:9325007	G	A	86	0.058	81	36.457	3.792	5	34.400	3.715	79	4	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--3	chr19:9325007	G	A	290	0.069	269	36.227	3.916	20	36.000	1.864	259	20	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--4	chr19:9325007	G	A	51	0.059	48	37.125	2.557	3	37.000	2.000	48	3	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--5	chr19:9325007	G	A	206	0.228	157	36.204	4.680	47	35.851	2.303	150	45	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--6	chr19:9325007	G	A	70	0.014	69	36.014	3.755	1	35.000	0.000	66	1	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr19:9325007	G	NA	178	0	178	36.298	3.442	0	0	0	173	0	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--1	chr19:9325102	G	A	78	0.141	66	36.636	4.963	11	33.455	3.804	61	10	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr19:9325102	G	A	88	0.170	73	37.342	4.679	15	35.067	2.086	70	14	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr19:9325102	G	A	301	0.043	288	37.319	3.902	13	33.923	5.590	279	12	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr19:9325102	G	A	60	0.083	55	36.309	4.281	5	35.600	1.342	52	5	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr19:9325102	G	A	188	0.186	152	37.046	4.565	35	34.829	3.417	146	33	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr19:9325102	G	A	68	0.132	59	37.153	3.581	9	34.222	2.635	58	8	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr19:9325102	G	NA	172	0	172	37.262	4.116	0	0	0	163	0	OR7D4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr19:9325352	G	A	43	0.047	41	36.049	4.399	2	36.000	1.414	40	2	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--2	chr19:9325352	G	A	40	0.050	38	35.421	3.922	2	36.500	0.707	35	2	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--3	chr19:9325352	G	NA	155	0	155	36.652	4.154	0	0	0	152	0	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--4	chr19:9325352	G	A	18	0.222	14	36.714	3.625	4	37.000	2.828	14	4	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--5	chr19:9325352	G	NA	89	0	89	36.865	3.279	0	0	0	87	0	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--6	chr19:9325352	G	NA	24	0	24	36.500	3.683	0	0	0	23	0	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr19:9325352	G	NA	61	0	61	36.328	3.949	0	0	0	58	0	OR7D4	exonic	synonymous_SNV
MB_Group4_T1--1	chr20:10620565	C	NA	32	0	30	36.833	3.505	0	0	0	29	0	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr20:10620565	C	NA	39	0	39	35.256	7.422	0	0	0	35	0	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr20:10620565	C	A	127	0.008	126	37.611	3.913	1	39.000	0.000	120	1	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr20:10620565	C	NA	27	0	27	36.074	7.092	0	0	0	24	0	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr20:10620565	C	NA	49	0	49	37.857	2.979	0	0	0	49	0	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr20:10620565	C	A	11	0.273	8	34.625	4.069	3	39.000	1.000	7	3	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr20:10620565	C	NA	91	0	91	36.791	4.579	0	0	0	89	0	JAG1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr20:18466510	T	C	23	0.087	21	34.714	6.857	2	37.000	0.000	19	2	RBBP9	downstream	NA
MB_Group4_T1--2	chr20:18466510	T	C	14	0.286	10	35.400	2.875	4	35.500	3.000	10	4	RBBP9	downstream	NA
MB_Group4_T1--3	chr20:18466510	T	C	39	0.103	35	36.286	5.256	4	37.000	0.000	34	4	RBBP9	downstream	NA
MB_Group4_T1--4	chr20:18466510	T	C	17	0.118	15	35.667	2.637	2	37.000	0.000	15	2	RBBP9	downstream	NA
MB_Group4_T1--5	chr20:18466510	T	C	29	0.345	17	37.176	3.812	10	36.700	0.949	16	10	RBBP9	downstream	NA
MB_Group4_T1--6	chr20:18466510	T	C	14	0.143	11	35.545	3.503	2	37.000	0.000	10	2	RBBP9	downstream	NA
MB_Group4_T1--GL	chr20:18466510	T	NA	35	0	35	36.314	4.227	0	0	0	34	0	RBBP9	downstream	NA
MB_Group4_T1--1	chr20:18466511	G	A	24	0.083	22	33.864	7.630	2	37.000	0.000	19	2	RBBP9	downstream	NA
MB_Group4_T1--2	chr20:18466511	G	A	14	0.143	12	35.333	2.839	2	37.000	0.000	11	2	RBBP9	downstream	NA
MB_Group4_T1--3	chr20:18466511	G	A	40	0.125	35	36.229	3.789	5	36.000	1.414	34	5	RBBP9	downstream	NA
MB_Group4_T1--4	chr20:18466511	G	NA	17	0	17	36.529	2.348	0	0	0	17	0	RBBP9	downstream	NA
MB_Group4_T1--5	chr20:18466511	G	A	29	0.310	20	37.050	3.663	9	36.778	0.667	19	9	RBBP9	downstream	NA
MB_Group4_T1--6	chr20:18466511	G	A	14	0.143	12	33.417	6.921	2	37.000	0.000	9	2	RBBP9	downstream	NA
MB_Group4_T1--GL	chr20:18466511	G	NA	35	0	35	36.400	3.380	0	0	0	35	0	RBBP9	downstream	NA
MB_Group4_T1--1	chr20:25203586	C	NA	13	0	13	37.308	3.199	0	0	0	13	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--2	chr20:25203586	C	NA	19	0	19	34.316	5.498	0	0	0	16	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--3	chr20:25203586	C	NA	113	0	113	36.212	4.378	0	0	0	105	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--4	chr20:25203586	C	NA	21	0	21	34.619	4.544	0	0	0	18	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--5	chr20:25203586	C	NA	66	0	66	36.288	3.666	0	0	0	62	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--6	chr20:25203586	C	T	11	0.273	8	38.250	1.488	3	36.333	4.041	8	3	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr20:25203586	C	NA	49	0	49	34.286	5.568	0	0	0	38	0	ENTPD6	exonic	synonymous_SNV
MB_Group4_T1--1	chr20:2641850	C	NA	14	0	14	36.857	4.975	0	0	0	13	0	IDH3B	intronic	NA
MB_Group4_T1--2	chr20:2641850	C	T	14	0.286	10	35.700	4.945	4	34.500	2.517	9	4	IDH3B	intronic	NA
MB_Group4_T1--3	chr20:2641850	C	T	93	0.086	85	36.412	4.305	8	34.125	2.696	79	8	IDH3B	intronic	NA
MB_Group4_T1--4	chr20:2641850	C	NA	12	0	12	37.417	3.554	0	0	0	12	0	IDH3B	intronic	NA
MB_Group4_T1--5	chr20:2641850	C	NA	57	0	57	35.316	5.458	0	0	0	50	0	IDH3B	intronic	NA
MB_Group4_T1--6	chr20:2641850	C	NA	13	0	13	35.000	4.453	0	0	0	11	0	IDH3B	intronic	NA
MB_Group4_T1--GL	chr20:2641850	C	NA	37	0	37	37.000	3.383	0	0	0	36	0	IDH3B	intronic	NA
MB_Group4_T1--1	chr20:33068268	G	NA	18	0	18	38.722	2.697	0	0	0	18	0	ITCH	intronic	NA
MB_Group4_T1--2	chr20:33068268	G	A	27	0.037	26	37.462	3.547	1	37.000	0.000	25	1	ITCH	intronic	NA
MB_Group4_T1--3	chr20:33068268	G	A	86	0.035	83	37.602	5.751	3	28.000	15.588	79	2	ITCH	intronic	NA
MB_Group4_T1--4	chr20:33068268	G	NA	10	0	10	36.400	6.096	0	0	0	9	0	ITCH	intronic	NA
MB_Group4_T1--5	chr20:33068268	G	A	56	0.161	47	38.170	2.914	9	35.111	4.137	46	8	ITCH	intronic	NA
MB_Group4_T1--6	chr20:33068268	G	NA	14	0	14	39.214	2.607	0	0	0	14	0	ITCH	intronic	NA
MB_Group4_T1--GL	chr20:33068268	G	NA	46	0	46	38.978	2.417	0	0	0	46	0	ITCH	intronic	NA
MB_Group4_T1--1	chr20:33068270	T	NA	18	0	18	38.500	2.728	0	0	0	18	0	ITCH	intronic	NA
MB_Group4_T1--2	chr20:33068270	T	G	27	0.037	26	37.654	3.452	1	37.000	0.000	26	1	ITCH	intronic	NA
MB_Group4_T1--3	chr20:33068270	T	G	86	0.035	83	37.373	5.926	3	33.667	5.774	77	2	ITCH	intronic	NA
MB_Group4_T1--4	chr20:33068270	T	NA	10	0	10	36.600	8.631	0	0	0	9	0	ITCH	intronic	NA
MB_Group4_T1--5	chr20:33068270	T	G	57	0.158	48	37.938	3.398	9	34.556	6.616	47	8	ITCH	intronic	NA
MB_Group4_T1--6	chr20:33068270	T	NA	14	0	14	39.071	2.129	0	0	0	14	0	ITCH	intronic	NA
MB_Group4_T1--GL	chr20:33068270	T	NA	45	0	45	38.511	2.785	0	0	0	44	0	ITCH	intronic	NA
MB_Group4_T1--1	chr20:33529364	C	NA	14	0	14	38.357	3.411	0	0	0	14	0	GSS	intronic	NA
MB_Group4_T1--2	chr20:33529364	C	NA	16	0	16	36.938	5.767	0	0	0	15	0	GSS	intronic	NA
MB_Group4_T1--3	chr20:33529364	C	NA	63	0	63	37.413	4.394	0	0	0	62	0	GSS	intronic	NA
MB_Group4_T1--4	chr20:33529364	C	A	10	0.300	7	36.429	2.573	3	36.667	2.887	7	3	GSS	intronic	NA
MB_Group4_T1--5	chr20:33529364	C	A	29	0.034	28	37.821	3.056	1	41.000	0.000	28	1	GSS	intronic	NA
MB_Group4_T1--6	chr20:33529364	C	NA	11	0	11	39.364	2.335	0	0	0	11	0	GSS	intronic	NA
MB_Group4_T1--GL	chr20:33529364	C	NA	40	0	40	37.825	3.234	0	0	0	39	0	GSS	intronic	NA
MB_Group4_T1--1	chr20:34135148	C	A	21	0.190	17	36.294	3.293	4	38.000	3.464	17	4	ERGIC3	intronic	NA
MB_Group4_T1--2	chr20:34135148	C	NA	15	0	15	34.333	6.945	0	0	0	12	0	ERGIC3	intronic	NA
MB_Group4_T1--3	chr20:34135148	C	NA	82	0	82	36.780	3.966	0	0	0	77	0	ERGIC3	intronic	NA
MB_Group4_T1--4	chr20:34135148	C	NA	10	0	10	37.800	3.011	0	0	0	10	0	ERGIC3	intronic	NA
MB_Group4_T1--5	chr20:34135148	C	NA	28	0	28	34.929	5.135	0	0	0	25	0	ERGIC3	intronic	NA
MB_Group4_T1--6	chr20:34135148	C	NA	12	0	12	35.750	4.827	0	0	0	10	0	ERGIC3	intronic	NA
MB_Group4_T1--GL	chr20:34135148	C	NA	59	0	59	37.305	3.668	0	0	0	56	0	ERGIC3	intronic	NA
MB_Group4_T1--1	chr20:44333655	C	NA	19	0	19	35.789	3.706	0	0	0	19	0	WFDC10B	UTR5	NA
MB_Group4_T1--2	chr20:44333655	C	NA	20	0	19	36.947	3.643	0	0	0	19	0	WFDC10B	UTR5	NA
MB_Group4_T1--3	chr20:44333655	C	A	48	0.021	47	34.872	4.955	1	37.000	0.000	40	1	WFDC10B	UTR5	NA
MB_Group4_T1--4	chr20:44333655	C	A	11	0.273	8	39.000	2.390	3	34.333	3.055	8	3	WFDC10B	UTR5	NA
MB_Group4_T1--5	chr20:44333655	C	NA	14	0	14	36.429	3.736	0	0	0	14	0	WFDC10B	UTR5	NA
MB_Group4_T1--6	chr20:44333655	C	NA	13	0	13	37.615	2.631	0	0	0	13	0	WFDC10B	UTR5	NA
MB_Group4_T1--GL	chr20:44333655	C	NA	62	0	62	35.339	4.988	0	0	0	57	0	WFDC10B	UTR5	NA
MB_Group4_T1--1	chr20:44680436	C	NA	33	0	33	34.515	3.124	0	0	0	31	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--2	chr20:44680436	C	NA	38	0	38	35.079	3.266	0	0	0	36	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--3	chr20:44680436	C	NA	106	0	106	34.962	4.238	0	0	0	100	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--4	chr20:44680436	C	NA	17	0	17	35.235	2.359	0	0	0	17	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--5	chr20:44680436	C	T	38	0.237	29	35.000	3.443	9	36.000	2.179	26	9	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--6	chr20:44680436	C	NA	20	0	20	32.200	8.250	0	0	0	17	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--GL	chr20:44680436	C	NA	41	0	41	35.488	2.293	0	0	0	41	0	SLC12A5	exonic	synonymous_SNV
MB_Group4_T1--1	chr20:45005424	C	T	15	0.067	14	38.429	3.275	1	31.000	0.000	14	1	ELMO2	intronic	NA
MB_Group4_T1--2	chr20:45005424	C	NA	21	0	21	39.048	3.008	0	0	0	21	0	ELMO2	intronic	NA
MB_Group4_T1--3	chr20:45005424	C	NA	79	0	79	37.722	4.935	0	0	0	75	0	ELMO2	intronic	NA
MB_Group4_T1--4	chr20:45005424	C	NA	12	0	12	38.333	2.839	0	0	0	12	0	ELMO2	intronic	NA
MB_Group4_T1--5	chr20:45005424	C	NA	32	0	32	38.094	3.541	0	0	0	30	0	ELMO2	intronic	NA
MB_Group4_T1--6	chr20:45005424	C	T	14	0.214	11	36.545	3.616	3	38.333	2.082	11	3	ELMO2	intronic	NA
MB_Group4_T1--GL	chr20:45005424	C	NA	88	0	88	37.977	4.802	0	0	0	84	0	ELMO2	intronic	NA
MB_Group4_T1--1	chr20:47246125	C	A	13	0.231	10	37.000	2.449	3	38.333	3.055	10	3	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr20:47246125	C	NA	23	0	23	34.130	7.882	0	0	0	20	0	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr20:47246125	C	NA	140	0	140	35.871	4.632	0	0	0	127	0	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr20:47246125	C	NA	16	0	16	34.875	8.617	0	0	0	14	0	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr20:47246125	C	NA	92	0	92	35.750	5.145	0	0	0	86	0	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr20:47246125	C	A	14	0.071	13	35.077	4.310	1	35.000	0.000	12	1	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr20:47246125	C	NA	59	0	59	35.153	5.726	0	0	0	53	0	PREX1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr20:49558788	C	T	45	0.333	30	35.000	7.607	15	37.133	1.187	26	15	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--2	chr20:49558788	C	T	37	0.189	30	37.000	5.206	7	37.571	1.512	29	7	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--3	chr20:49558788	C	T	119	0.092	108	36.426	5.507	11	36.727	3.349	102	10	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--4	chr20:49558788	C	T	26	0.231	20	35.950	5.226	6	37.000	1.265	18	6	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--5	chr20:49558788	C	T	96	0.188	78	37.718	3.456	18	37.056	3.948	76	17	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--6	chr20:49558788	C	T	23	0.087	21	36.952	4.043	2	37.500	0.707	20	2	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--GL	chr20:49558788	C	NA	90	0	90	36.978	4.642	0	0	0	86	0	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--1	chr20:49558794	T	C	33	0.152	28	36.750	4.213	5	36.200	3.633	27	5	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--2	chr20:49558794	T	C	29	0.138	25	35.720	7.289	4	38.500	1.915	22	4	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--3	chr20:49558794	T	C	103	0.039	99	37.313	3.605	4	36.500	1.000	95	4	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--4	chr20:49558794	T	C	19	0.053	18	34.444	8.155	1	36.000	0.000	14	1	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--5	chr20:49558794	T	C	88	0.170	73	38.096	3.119	15	36.533	1.959	72	15	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--6	chr20:49558794	T	C	20	0.050	18	36.611	3.517	1	37.000	0.000	18	1	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--GL	chr20:49558794	T	NA	80	0	79	37.038	4.659	0	0	0	75	0	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--1	chr20:49558841	A	G	21	0.048	20	36.600	3.152	1	37.000	0.000	19	1	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--2	chr20:49558841	A	G	27	0.037	26	35.385	4.327	1	37.000	0.000	25	1	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--3	chr20:49558841	A	G	73	0.041	70	36.471	4.972	3	37.000	0.000	65	3	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--4	chr20:49558841	A	G	14	0.071	13	34.385	7.985	1	34.000	0.000	12	1	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--5	chr20:49558841	A	G	59	0.186	48	35.958	5.263	11	36.273	1.272	45	11	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--6	chr20:49558841	A	NA	20	0	20	36.800	3.238	0	0	0	19	0	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--GL	chr20:49558841	A	NA	44	0	44	37.273	3.526	0	0	0	43	0	RP5-914P20.5	ncRNA_intronic	NA
MB_Group4_T1--1	chr20:57022720	A	G	52	0.077	25	36.680	3.375	4	34.500	1.915	25	4	VAPB	UTR3	NA
MB_Group4_T1--2	chr20:57022720	A	G	65	0.031	17	36.882	1.867	2	34.500	0.707	17	2	VAPB	UTR3	NA
MB_Group4_T1--3	chr20:57022720	A	NA	272	0	95	35.642	3.024	0	0	0	90	0	VAPB	UTR3	NA
MB_Group4_T1--4	chr20:57022720	A	NA	32	0	14	36.714	3.173	0	0	0	14	0	VAPB	UTR3	NA
MB_Group4_T1--5	chr20:57022720	A	G	82	0.110	39	36.077	4.157	9	34.111	1.764	38	9	VAPB	UTR3	NA
MB_Group4_T1--6	chr20:57022720	A	NA	31	0	11	33.909	6.284	0	0	0	10	0	VAPB	UTR3	NA
MB_Group4_T1--GL	chr20:57022720	A	NA	222	0	97	34.557	5.093	0	0	0	88	0	VAPB	UTR3	NA
MB_Group4_T1--1	chr20:57769478	C	NA	12	0	12	36.083	3.204	0	0	0	11	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr20:57769478	C	A	16	0.188	13	37.846	4.580	3	35.333	1.528	12	3	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr20:57769478	C	NA	93	0	93	36.570	4.187	0	0	0	89	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr20:57769478	C	NA	13	0	12	34.333	5.140	0	0	0	10	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr20:57769478	C	NA	57	0	57	35.754	4.037	0	0	0	53	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr20:57769478	C	NA	14	0	14	36.571	3.345	0	0	0	13	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr20:57769478	C	NA	33	0	33	36.909	3.195	0	0	0	33	0	ZNF831	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr20:6065587	A	G	12	0.167	10	35.300	7.088	2	32.500	2.121	8	2	FERMT1	intronic	NA
MB_Group4_T1--2	chr20:6065587	A	G	14	0.143	12	36.583	4.981	2	34.000	0.000	10	2	FERMT1	intronic	NA
MB_Group4_T1--3	chr20:6065587	A	G	74	0.108	66	36.712	4.594	8	30.875	4.291	61	6	FERMT1	intronic	NA
MB_Group4_T1--4	chr20:6065587	A	NA	14	0	10	35.800	5.329	0	0	0	9	0	FERMT1	intronic	NA
MB_Group4_T1--5	chr20:6065587	A	G	49	0.306	34	37.706	3.564	15	32.133	1.457	33	15	FERMT1	intronic	NA
MB_Group4_T1--6	chr20:6065587	A	G	19	0.105	17	37.824	3.504	2	32.500	2.121	17	2	FERMT1	intronic	NA
MB_Group4_T1--GL	chr20:6065587	A	NA	56	0	56	36.661	5.797	0	0	0	53	0	FERMT1	intronic	NA
MB_Group4_T1--1	chr20:6065591	T	C	15	0.133	13	35.769	4.419	2	37.000	0.000	12	2	FERMT1	intronic	NA
MB_Group4_T1--2	chr20:6065591	T	C	14	0.143	12	36.333	6.065	2	37.000	0.000	11	2	FERMT1	intronic	NA
MB_Group4_T1--3	chr20:6065591	T	C	74	0.108	66	37.909	3.581	8	35.500	3.024	63	8	FERMT1	intronic	NA
MB_Group4_T1--4	chr20:6065591	T	C	14	0.286	10	37.000	4.028	4	36.500	1.000	10	4	FERMT1	intronic	NA
MB_Group4_T1--5	chr20:6065591	T	C	48	0.354	31	38.161	4.321	17	36.118	2.058	30	17	FERMT1	intronic	NA
MB_Group4_T1--6	chr20:6065591	T	C	20	0.150	17	37.824	3.087	3	36.333	1.155	17	3	FERMT1	intronic	NA
MB_Group4_T1--GL	chr20:6065591	T	NA	52	0	52	38.058	3.594	0	0	0	50	0	FERMT1	intronic	NA
MB_Group4_T1--1	chr20:62648359	T	G	39	0.128	32	36.344	3.866	5	32.000	7.874	31	4	PRPF6	intronic	NA
MB_Group4_T1--2	chr20:62648359	T	G	33	0.242	25	35.920	4.202	8	33.000	9.426	23	7	PRPF6	intronic	NA
MB_Group4_T1--3	chr20:62648359	T	G	172	0.017	168	36.702	5.058	3	37.000	0.000	160	3	PRPF6	intronic	NA
MB_Group4_T1--4	chr20:62648359	T	NA	23	0	22	37.545	2.890	0	0	0	22	0	PRPF6	intronic	NA
MB_Group4_T1--5	chr20:62648359	T	G	205	0.063	189	36.545	4.470	13	34.385	7.676	176	12	PRPF6	intronic	NA
MB_Group4_T1--6	chr20:62648359	T	G	22	0.045	19	38.105	2.767	1	37.000	0.000	19	1	PRPF6	intronic	NA
MB_Group4_T1--GL	chr20:62648359	T	NA	54	0	54	36.778	4.259	0	0	0	51	0	PRPF6	intronic	NA
MB_Group4_T1--1	chr2:112778145	G	A	20	0.250	15	37.333	2.769	5	35.200	2.490	15	5	MERTK	intronic	NA
MB_Group4_T1--2	chr2:112778145	G	A	31	0.452	17	35.529	2.764	14	36.286	1.267	17	14	MERTK	intronic	NA
MB_Group4_T1--3	chr2:112778145	G	A	52	0.192	42	35.738	4.978	10	33.100	5.685	38	9	MERTK	intronic	NA
MB_Group4_T1--4	chr2:112778145	G	A	14	0.143	12	37.583	2.644	2	35.000	0.000	12	2	MERTK	intronic	NA
MB_Group4_T1--5	chr2:112778145	G	A	41	0.293	29	36.448	5.742	12	35.583	3.777	27	11	MERTK	intronic	NA
MB_Group4_T1--6	chr2:112778145	G	A	15	0.267	11	35.727	2.412	4	35.250	2.363	11	4	MERTK	intronic	NA
MB_Group4_T1--GL	chr2:112778145	G	NA	43	0	43	35.163	5.765	0	0	0	41	0	MERTK	intronic	NA
MB_Group4_T1--1	chr2:113480971	C	NA	31	0	31	34.452	6.049	0	0	0	30	0	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--2	chr2:113480971	C	NA	11	0	11	37.455	2.841	0	0	0	11	0	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--3	chr2:113480971	C	NA	106	0	106	36.604	3.179	0	0	0	103	0	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--4	chr2:113480971	C	G	14	0.357	9	34.444	4.953	5	38.800	1.789	8	5	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--5	chr2:113480971	C	G	91	0.286	64	36.250	3.733	26	36.269	5.717	59	23	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--6	chr2:113480971	C	G	23	0.435	13	35.308	5.073	10	36.500	3.342	11	9	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--GL	chr2:113480971	C	NA	46	0	46	36.652	3.013	0	0	0	46	0	SLC20A1(dist=59571),CKAP2L(dist=14473)	intergenic	NA
MB_Group4_T1--1	chr21:15651991	C	NA	26	0	26	38.154	3.158	0	0	0	26	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--2	chr21:15651991	C	NA	23	0	23	38.870	2.546	0	0	0	23	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--3	chr21:15651991	C	NA	38	0	38	38.553	2.202	0	0	0	38	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--4	chr21:15651991	C	NA	23	0	23	38.739	2.958	0	0	0	23	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--5	chr21:15651991	C	NA	10	0	10	37.300	4.029	0	0	0	9	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--6	chr21:15651991	C	A	12	0.250	9	38.333	2.693	3	38.667	3.215	9	3	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--GL	chr21:15651991	C	NA	57	0	57	38.386	3.358	0	0	0	56	0	ABCC13	ncRNA_intronic	NA
MB_Group4_T1--1	chr21:31661691	A	NA	30	0	30	37.267	4.601	0	0	0	29	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr21:31661691	A	NA	29	0	29	37.034	4.633	0	0	0	28	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr21:31661691	A	NA	45	0	45	37.156	3.457	0	0	0	42	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr21:31661691	A	NA	33	0	33	37.364	2.826	0	0	0	33	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr21:31661691	A	G	12	0.250	9	38.111	2.848	3	39.333	1.528	9	3	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr21:31661691	A	NA	21	0	21	35.857	2.851	0	0	0	21	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr21:31661691	A	NA	144	0	144	37.007	3.336	0	0	0	139	0	KRTAP25-1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr21:34120988	C	T	28	0.143	24	37.875	4.025	4	37.250	2.630	22	4	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr21:34120988	C	NA	34	0	34	37.824	2.790	0	0	0	34	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr21:34120988	C	NA	41	0	41	37.561	3.332	0	0	0	40	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr21:34120988	C	NA	23	0	23	38.000	2.505	0	0	0	23	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr21:34120988	C	NA	15	0	15	38.067	3.105	0	0	0	15	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr21:34120988	C	NA	17	0	17	35.882	5.743	0	0	0	15	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr21:34120988	C	NA	84	0	84	36.750	5.169	0	0	0	79	0	PAXBP1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr21:36410948	T	G	14	0.214	11	35.364	9.113	3	37.333	4.726	10	3	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--2	chr21:36410948	T	G	21	0.095	18	35.444	3.745	2	30.000	7.071	16	1	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--3	chr21:36410948	T	G	100	0.080	92	32.446	7.170	8	21.625	11.975	65	2	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--4	chr21:36410948	T	G	21	0.143	18	30.611	12.830	3	39.667	1.155	13	3	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--5	chr21:36410948	T	G	31	0.194	25	30.720	10.652	6	34.167	8.035	18	5	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--6	chr21:36410948	T	G	22	0.045	21	33.333	9.356	1	37.000	0.000	17	1	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--GL	chr21:36410948	T	NA	71	0	67	33.194	7.548	0	0	0	49	0	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--1	chr21:36410950	G	T	14	0.143	10	38.000	2.404	2	24.500	23.335	10	1	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--2	chr21:36410950	G	NA	22	0	22	37.182	7.035	0	0	0	21	0	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--3	chr21:36410950	G	T	103	0.019	81	36.296	4.908	2	23.500	21.920	76	1	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--4	chr21:36410950	G	T	21	0.143	16	36.938	4.640	3	35.667	2.517	15	3	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--5	chr21:36410950	G	T	31	0.161	20	32.700	11.268	5	32.600	4.827	16	4	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--6	chr21:36410950	G	NA	22	0	20	36.350	6.976	0	0	0	19	0	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--GL	chr21:36410950	G	NA	71	0	47	36.894	5.600	0	0	0	45	0	RUNX1-IT1	ncRNA_exonic	NA
MB_Group4_T1--1	chr2:136562766	T	G	25	0.240	19	35.895	2.622	6	36.667	0.816	19	6	LCT	intronic	NA
MB_Group4_T1--2	chr2:136562766	T	G	21	0.429	12	35.917	3.895	9	36.778	0.667	11	9	LCT	intronic	NA
MB_Group4_T1--3	chr2:136562766	T	G	113	0.221	88	36.114	4.872	25	36.280	2.246	84	24	LCT	intronic	NA
MB_Group4_T1--4	chr2:136562766	T	G	13	0.308	9	35.778	2.774	4	36.500	1.000	9	4	LCT	intronic	NA
MB_Group4_T1--5	chr2:136562766	T	G	93	0.538	42	37.357	3.267	50	35.140	6.095	42	47	LCT	intronic	NA
MB_Group4_T1--6	chr2:136562766	T	G	19	0.211	15	36.533	3.701	4	36.000	1.155	15	4	LCT	intronic	NA
MB_Group4_T1--GL	chr2:136562766	T	NA	47	0	47	37.277	2.593	0	0	0	47	0	LCT	intronic	NA
MB_Group4_T1--1	chr21:38466203	G	NA	31	0	31	38.194	3.291	0	0	0	31	0	TTC3	intronic	NA
MB_Group4_T1--2	chr21:38466203	G	NA	20	0	20	36.200	4.916	0	0	0	19	0	TTC3	intronic	NA
MB_Group4_T1--3	chr21:38466203	G	NA	47	0	47	35.660	5.902	0	0	0	44	0	TTC3	intronic	NA
MB_Group4_T1--4	chr21:38466203	G	NA	25	0	25	37.200	3.082	0	0	0	25	0	TTC3	intronic	NA
MB_Group4_T1--5	chr21:38466203	G	T	17	0.176	14	37.929	2.731	3	38.333	4.619	14	3	TTC3	intronic	NA
MB_Group4_T1--6	chr21:38466203	G	NA	12	0	12	36.333	3.676	0	0	0	12	0	TTC3	intronic	NA
MB_Group4_T1--GL	chr21:38466203	G	NA	80	0	80	36.788	3.679	0	0	0	80	0	TTC3	intronic	NA
MB_Group4_T1--1	chr21:38466261	T	NA	34	0	34	36.706	3.050	0	0	0	34	0	TTC3	intronic	NA
MB_Group4_T1--2	chr21:38466261	T	NA	30	0	30	37.433	3.093	0	0	0	29	0	TTC3	intronic	NA
MB_Group4_T1--3	chr21:38466261	T	NA	57	0	57	37.404	3.427	0	0	0	55	0	TTC3	intronic	NA
MB_Group4_T1--4	chr21:38466261	T	NA	24	0	24	36.333	3.345	0	0	0	23	0	TTC3	intronic	NA
MB_Group4_T1--5	chr21:38466261	T	A	14	0.214	11	35.818	1.471	3	38.667	3.215	11	3	TTC3	intronic	NA
MB_Group4_T1--6	chr21:38466261	T	NA	15	0	15	36.533	3.662	0	0	0	14	0	TTC3	intronic	NA
MB_Group4_T1--GL	chr21:38466261	T	NA	112	0	111	37.117	4.674	0	0	0	107	0	TTC3	intronic	NA
MB_Group4_T1--1	chr21:43714669	C	NA	16	0	16	34.438	6.460	0	0	0	14	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--2	chr21:43714669	C	A	16	0.188	13	33.692	7.793	3	35.667	2.887	12	3	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--3	chr21:43714669	C	NA	96	0	96	36.135	4.450	0	0	0	90	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--4	chr21:43714669	C	NA	27	0	27	35.111	5.279	0	0	0	25	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--5	chr21:43714669	C	NA	41	0	41	34.854	6.191	0	0	0	38	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--6	chr21:43714669	C	NA	14	0	14	36.929	3.198	0	0	0	14	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr21:43714669	C	NA	72	0	72	35.931	4.054	0	0	0	69	0	ABCG1	exonic	synonymous_SNV
MB_Group4_T1--1	chr21:45994817	A	G	32	0.250	24	36.042	3.983	8	33.875	6.266	23	7	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--2	chr21:45994817	A	G	33	0.242	24	35.167	4.733	8	37.000	0.000	23	8	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--3	chr21:45994817	A	G	126	0.056	119	33.168	6.525	7	37.000	0.000	101	7	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--4	chr21:45994817	A	G	15	0.133	13	32.308	8.948	2	36.000	1.414	10	2	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--5	chr21:45994817	A	G	84	0.083	77	35.286	4.288	7	36.286	1.890	70	7	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--6	chr21:45994817	A	G	17	0.176	14	32.929	7.498	3	35.667	2.309	11	3	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr21:45994817	A	NA	51	0	51	33.569	5.597	0	0	0	43	0	KRTAP10-4	exonic	synonymous_SNV
MB_Group4_T1--1	chr21:45999772	T	C	58	0.155	49	36.939	3.294	9	36.667	1.000	47	9	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr21:45999772	T	C	49	0.184	40	34.350	6.229	9	36.556	2.128	35	9	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr21:45999772	T	C	170	0.065	159	35.119	4.239	11	36.000	1.414	144	11	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr21:45999772	T	C	49	0.143	42	36.667	2.834	7	36.429	1.512	42	7	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr21:45999772	T	C	135	0.119	118	35.381	4.523	16	35.500	4.926	105	15	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr21:45999772	T	C	29	0.034	28	34.714	5.112	1	37.000	0.000	24	1	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr21:45999772	T	NA	102	0	102	35.873	4.537	0	0	0	97	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr21:45999774	T	C	59	0.153	50	37.020	2.722	9	36.889	1.054	49	9	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr21:45999774	T	C	50	0.180	41	35.244	4.841	9	37.222	1.563	38	9	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr21:45999774	T	C	166	0.066	153	35.373	4.732	11	36.182	1.079	142	11	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr21:45999774	T	C	49	0.143	42	36.452	2.778	7	36.429	1.512	42	7	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr21:45999774	T	C	135	0.126	118	35.110	5.625	17	35.706	2.845	105	16	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr21:45999774	T	C	30	0.033	29	35.759	3.158	1	37.000	0.000	28	1	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr21:45999774	T	NA	100	0	100	36.430	3.783	0	0	0	96	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr21:46000331	G	NA	55	0	55	36.582	3.645	0	0	0	53	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr21:46000331	G	C	76	0.184	62	37.161	4.165	14	31.857	2.282	59	12	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr21:46000331	G	NA	181	0	181	36.768	4.555	0	0	0	174	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr21:46000331	G	NA	29	0	29	36.138	4.658	0	0	0	27	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr21:46000331	G	C	40	0.250	30	36.967	3.978	10	31.000	0.816	29	10	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr21:46000331	G	NA	32	0	31	37.355	2.727	0	0	0	31	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr21:46000331	G	NA	114	0	114	36.816	3.654	0	0	0	110	0	KRTAP10-5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr21:46011343	A	C	38	0.079	35	33.371	4.577	3	36.333	1.155	30	3	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--2	chr21:46011343	A	C	28	0.214	22	35.182	2.519	6	37.000	0.000	22	6	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--3	chr21:46011343	A	C	195	0.051	185	33.546	5.221	10	32.500	9.348	164	9	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--4	chr21:46011343	A	C	39	0.128	34	34.324	4.312	5	37.000	0.000	33	5	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--5	chr21:46011343	A	C	160	0.025	156	33.878	5.146	4	36.000	1.155	140	4	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--6	chr21:46011343	A	C	25	0.040	24	32.458	6.507	1	37.000	0.000	20	1	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr21:46011343	A	NA	110	0	110	35.100	3.617	0	0	0	105	0	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--1	chr21:46011526	T	A	91	0.176	75	34.933	5.917	16	36.750	3.088	69	16	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--2	chr21:46011526	T	A	95	0.147	81	35.790	3.885	14	36.357	2.678	78	14	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--3	chr21:46011526	T	A	397	0.008	393	34.819	5.168	3	36.000	1.732	356	3	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--4	chr21:46011526	T	A	69	0.087	63	35.730	3.534	6	37.333	1.966	59	6	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--5	chr21:46011526	T	A	298	0.020	292	34.041	6.026	6	34.000	4.899	248	4	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--6	chr21:46011526	T	A	56	0.054	52	35.942	3.873	3	39.000	1.732	50	3	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--GL	chr21:46011526	T	NA	247	0	247	35.328	5.043	0	0	0	233	0	KRTAP10-6	exonic	synonymous_SNV
MB_Group4_T1--1	chr21:47819274	T	G	14	0.357	9	36.222	3.193	5	33.400	5.595	9	4	PCNT	intronic	NA
MB_Group4_T1--2	chr21:47819274	T	G	16	0.188	13	37.308	5.202	3	37.333	1.155	12	3	PCNT	intronic	NA
MB_Group4_T1--3	chr21:47819274	T	G	72	0.153	61	35.590	7.684	11	33.091	9.279	55	10	PCNT	intronic	NA
MB_Group4_T1--4	chr21:47819274	T	NA	10	0	10	37.000	5.617	0	0	0	9	0	PCNT	intronic	NA
MB_Group4_T1--5	chr21:47819274	T	G	62	0.161	52	36.442	5.998	10	31.500	9.857	49	6	PCNT	intronic	NA
MB_Group4_T1--6	chr21:47819274	T	G	13	0.308	9	33.444	8.353	4	30.500	7.937	6	3	PCNT	intronic	NA
MB_Group4_T1--GL	chr21:47819274	T	NA	39	0	38	34.184	6.653	0	0	0	28	0	PCNT	intronic	NA
MB_Group4_T1--1	chr21:47855723	A	G	33	0.061	31	37.194	3.736	2	37.000	0.000	30	2	PCNT	intronic	NA
MB_Group4_T1--2	chr21:47855723	A	G	13	0.308	9	37.667	2.236	4	34.750	3.304	9	4	PCNT	intronic	NA
MB_Group4_T1--3	chr21:47855723	A	G	113	0.018	111	37.550	3.714	2	39.000	0.000	106	2	PCNT	intronic	NA
MB_Group4_T1--4	chr21:47855723	A	G	15	0.133	13	35.692	8.341	2	35.000	0.000	12	2	PCNT	intronic	NA
MB_Group4_T1--5	chr21:47855723	A	G	79	0.051	75	37.667	2.979	4	38.000	2.582	74	4	PCNT	intronic	NA
MB_Group4_T1--6	chr21:47855723	A	NA	14	0	14	38.143	2.656	0	0	0	14	0	PCNT	intronic	NA
MB_Group4_T1--GL	chr21:47855723	A	NA	75	0	75	38.080	2.958	0	0	0	74	0	PCNT	intronic	NA
MB_Group4_T1--1	chr2:152346910	C	NA	20	0	20	36.200	3.901	0	0	0	18	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:152346910	C	A	25	0.160	21	35.333	7.031	4	34.250	2.986	19	4	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:152346910	C	NA	50	0	50	35.740	3.922	0	0	0	47	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:152346910	C	NA	25	0	25	35.840	3.848	0	0	0	23	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:152346910	C	NA	10	0	10	34.900	6.506	0	0	0	8	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:152346910	C	NA	10	0	10	34.700	5.658	0	0	0	9	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:152346910	C	NA	83	0	83	35.639	4.116	0	0	0	76	0	NEB	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr2:170393924	C	NA	22	0	22	37.636	2.985	0	0	0	22	0	FASTKD1	intronic	NA
MB_Group4_T1--2	chr2:170393924	C	T	20	0.100	18	37.111	2.805	2	36.000	1.414	18	2	FASTKD1	intronic	NA
MB_Group4_T1--3	chr2:170393924	C	T	48	0.021	46	37.935	4.563	1	37.000	0.000	43	1	FASTKD1	intronic	NA
MB_Group4_T1--4	chr2:170393924	C	T	18	0.056	17	36.118	5.476	1	35.000	0.000	15	1	FASTKD1	intronic	NA
MB_Group4_T1--5	chr2:170393924	C	T	34	0.147	28	36.679	5.498	5	36.600	0.894	26	5	FASTKD1	intronic	NA
MB_Group4_T1--6	chr2:170393924	C	NA	11	0	11	38.000	2.408	0	0	0	11	0	FASTKD1	intronic	NA
MB_Group4_T1--GL	chr2:170393924	C	NA	66	0	66	36.939	5.209	0	0	0	62	0	FASTKD1	intronic	NA
MB_Group4_T1--1	chr2:173340140	A	NA	15	0	15	35.000	3.606	0	0	0	14	0	ITGA6	intronic	NA
MB_Group4_T1--2	chr2:173340140	A	NA	12	0	12	36.667	2.871	0	0	0	12	0	ITGA6	intronic	NA
MB_Group4_T1--3	chr2:173340140	A	NA	41	0	41	36.756	4.158	0	0	0	40	0	ITGA6	intronic	NA
MB_Group4_T1--4	chr2:173340140	A	NA	11	0	11	35.000	6.099	0	0	0	9	0	ITGA6	intronic	NA
MB_Group4_T1--5	chr2:173340140	A	G	20	0.200	16	37.125	4.365	4	34.750	2.872	15	4	ITGA6	intronic	NA
MB_Group4_T1--6	chr2:173340140	A	G	13	0.077	12	36.500	3.580	1	37.000	0.000	12	1	ITGA6	intronic	NA
MB_Group4_T1--GL	chr2:173340140	A	NA	49	0	49	36.633	3.073	0	0	0	48	0	ITGA6	intronic	NA
MB_Group4_T1--1	chr2:179631365	C	NA	21	0	10	37.400	3.373	0	0	0	10	0	TTN	intronic	NA
MB_Group4_T1--2	chr2:179631365	C	NA	30	0	9	36.778	2.587	0	0	0	9	0	TTN	intronic	NA
MB_Group4_T1--3	chr2:179631365	C	NA	39	0	19	35.316	3.481	0	0	0	18	0	TTN	intronic	NA
MB_Group4_T1--4	chr2:179631365	C	NA	12	0	9	36.889	5.465	0	0	0	8	0	TTN	intronic	NA
MB_Group4_T1--5	chr2:179631365	C	NA	19	0	11	34.727	6.133	0	0	0	9	0	TTN	intronic	NA
MB_Group4_T1--6	chr2:179631365	C	A	26	0.308	11	36.364	3.557	8	36.500	2.138	11	8	TTN	intronic	NA
MB_Group4_T1--GL	chr2:179631365	C	NA	88	0	46	35.870	3.525	0	0	0	45	0	TTN	intronic	NA
MB_Group4_T1--1	chr2:183821043	T	C	15	0.067	14	34.429	4.603	1	37.000	0.000	12	1	NCKAP1	intronic	NA
MB_Group4_T1--2	chr2:183821043	T	C	14	0.357	9	36.889	2.088	5	37.000	0.000	9	5	NCKAP1	intronic	NA
MB_Group4_T1--3	chr2:183821043	T	C	38	0.079	35	35.486	4.755	3	37.000	0.000	31	3	NCKAP1	intronic	NA
MB_Group4_T1--4	chr2:183821043	T	C	13	0.154	11	35.818	4.094	2	36.000	4.243	9	2	NCKAP1	intronic	NA
MB_Group4_T1--5	chr2:183821043	T	C	37	0.162	30	36.600	5.223	6	37.833	0.983	28	6	NCKAP1	intronic	NA
MB_Group4_T1--6	chr2:183821043	T	NA	13	0	13	36.769	3.193	0	0	0	12	0	NCKAP1	intronic	NA
MB_Group4_T1--GL	chr2:183821043	T	NA	44	0	44	36.500	3.580	0	0	0	42	0	NCKAP1	intronic	NA
MB_Group4_T1--1	chr2:186604167	C	NA	29	0	29	37.448	2.354	0	0	0	29	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:186604167	C	A	16	0.188	13	37.385	2.468	3	39.000	2.000	13	3	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:186604167	C	NA	57	0	57	36.123	5.099	0	0	0	53	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:186604167	C	NA	13	0	13	36.923	3.662	0	0	0	13	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:186604167	C	NA	63	0	63	36.619	3.896	0	0	0	60	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:186604167	C	NA	13	0	13	36.077	3.278	0	0	0	12	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:186604167	C	NA	35	0	35	35.829	3.823	0	0	0	34	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr2:186667117	T	NA	15	0	15	37.800	2.859	0	0	0	15	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:186667117	T	C	18	0.167	15	37.733	2.685	3	39.333	1.528	15	3	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:186667117	T	NA	33	0	33	37.121	3.847	0	0	0	30	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:186667117	T	NA	14	0	14	39.429	1.604	0	0	0	14	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:186667117	T	NA	10	0	10	34.700	5.870	0	0	0	8	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:186667117	T	NA	17	0	17	36.353	4.358	0	0	0	16	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:186667117	T	NA	59	0	59	37.475	5.547	0	0	0	55	0	FSIP2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr2:187559050	A	NA	50	0	49	36.286	5.817	0	0	0	46	0	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--2	chr2:187559050	A	G	55	0.127	48	35.792	6.678	7	36.000	4.967	43	6	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--3	chr2:187559050	A	G	112	0.009	111	36.685	4.189	1	41.000	0.000	108	1	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--4	chr2:187559050	A	NA	20	0	19	35.105	5.087	0	0	0	17	0	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--5	chr2:187559050	A	G	116	0.034	112	36.330	5.227	4	25.000	12.570	107	2	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--6	chr2:187559050	A	NA	22	0	21	36.048	6.989	0	0	0	20	0	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--GL	chr2:187559050	A	NA	90	0	90	35.956	5.361	0	0	0	84	0	FAM171B	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:189931431	A	G	45	0.178	36	38.361	3.191	8	39.625	2.326	36	8	COL5A2	intronic	NA
MB_Group4_T1--2	chr2:189931431	A	G	40	0.025	39	39.205	2.330	1	34.000	0.000	39	1	COL5A2	intronic	NA
MB_Group4_T1--3	chr2:189931431	A	G	76	0.039	73	38.630	2.860	3	38.667	2.517	72	3	COL5A2	intronic	NA
MB_Group4_T1--4	chr2:189931431	A	NA	27	0	27	38.333	3.893	0	0	0	26	0	COL5A2	intronic	NA
MB_Group4_T1--5	chr2:189931431	A	NA	18	0	18	37.500	7.710	0	0	0	17	0	COL5A2	intronic	NA
MB_Group4_T1--6	chr2:189931431	A	NA	25	0	25	38.360	4.517	0	0	0	24	0	COL5A2	intronic	NA
MB_Group4_T1--GL	chr2:189931431	A	NA	122	0	122	38.459	3.134	0	0	0	119	0	COL5A2	intronic	NA
MB_Group4_T1--1	chr2:198263123	T	A	19	0.158	16	38.625	2.500	3	39.667	0.577	16	3	SF3B1	intronic	NA
MB_Group4_T1--2	chr2:198263123	T	NA	25	0	25	38.640	2.841	0	0	0	25	0	SF3B1	intronic	NA
MB_Group4_T1--3	chr2:198263123	T	NA	53	0	53	38.925	3.069	0	0	0	52	0	SF3B1	intronic	NA
MB_Group4_T1--4	chr2:198263123	T	NA	20	0	20	36.150	4.320	0	0	0	18	0	SF3B1	intronic	NA
MB_Group4_T1--5	chr2:198263123	T	NA	13	0	13	37.077	2.842	0	0	0	13	0	SF3B1	intronic	NA
MB_Group4_T1--6	chr2:198263123	T	NA	19	0	18	38.111	3.197	0	0	0	17	0	SF3B1	intronic	NA
MB_Group4_T1--GL	chr2:198263123	T	NA	71	0	71	37.930	3.781	0	0	0	67	0	SF3B1	intronic	NA
MB_Group4_T1--1	chr2:198352069	A	NA	25	0	24	37.292	2.985	0	0	0	24	0	HSPD1	intronic	NA
MB_Group4_T1--2	chr2:198352069	A	NA	16	0	16	35.312	7.561	0	0	0	14	0	HSPD1	intronic	NA
MB_Group4_T1--3	chr2:198352069	A	G	69	0.029	67	36.791	3.378	2	38.000	1.414	65	2	HSPD1	intronic	NA
MB_Group4_T1--4	chr2:198352069	A	NA	11	0	11	36.000	4.195	0	0	0	10	0	HSPD1	intronic	NA
MB_Group4_T1--5	chr2:198352069	A	G	18	0.333	12	37.167	3.486	6	36.667	0.816	11	6	HSPD1	intronic	NA
MB_Group4_T1--6	chr2:198352069	A	NA	13	0	13	37.154	2.911	0	0	0	13	0	HSPD1	intronic	NA
MB_Group4_T1--GL	chr2:198352069	A	NA	72	0	72	36.417	5.235	0	0	0	68	0	HSPD1	intronic	NA
MB_Group4_T1--1	chr2:206992952	C	T	25	0.440	14	36.214	5.010	11	36.273	1.009	13	11	NDUFS1	intronic	NA
MB_Group4_T1--2	chr2:206992952	C	T	17	0.294	12	36.167	3.589	5	37.000	0.000	11	5	NDUFS1	intronic	NA
MB_Group4_T1--3	chr2:206992952	C	T	52	0.404	31	37.097	4.629	21	36.714	0.956	30	21	NDUFS1	intronic	NA
MB_Group4_T1--4	chr2:206992952	C	T	17	0.529	8	34.375	4.069	9	34.556	5.897	6	8	NDUFS1	intronic	NA
MB_Group4_T1--5	chr2:206992952	C	T	72	0.625	27	36.630	3.992	45	35.711	4.077	25	42	NDUFS1	intronic	NA
MB_Group4_T1--6	chr2:206992952	C	T	12	0.667	4	37.000	2.449	8	37.000	0.000	4	8	NDUFS1	intronic	NA
MB_Group4_T1--GL	chr2:206992952	C	NA	40	0	40	36.950	2.995	0	0	0	40	0	NDUFS1	intronic	NA
MB_Group4_T1--1	chr2:206992953	A	G	25	0.440	14	37.357	2.977	11	36.455	1.293	14	11	NDUFS1	intronic	NA
MB_Group4_T1--2	chr2:206992953	A	G	17	0.294	12	35.583	3.175	5	37.000	0.000	12	5	NDUFS1	intronic	NA
MB_Group4_T1--3	chr2:206992953	A	G	52	0.404	31	37.226	3.775	21	36.810	0.602	28	21	NDUFS1	intronic	NA
MB_Group4_T1--4	chr2:206992953	A	G	16	0.500	7	34.714	6.525	8	36.750	0.707	6	8	NDUFS1	intronic	NA
MB_Group4_T1--5	chr2:206992953	A	G	72	0.597	27	36.963	2.875	43	36.442	1.278	27	43	NDUFS1	intronic	NA
MB_Group4_T1--6	chr2:206992953	A	G	12	0.667	4	36.500	3.317	8	37.000	0.000	4	8	NDUFS1	intronic	NA
MB_Group4_T1--GL	chr2:206992953	A	NA	39	0	39	36.769	3.815	0	0	0	36	0	NDUFS1	intronic	NA
MB_Group4_T1--1	chr2:206995140	G	A	41	0.146	35	36.000	4.583	6	36.167	0.983	33	6	NDUFS1	intronic	NA
MB_Group4_T1--2	chr2:206995140	G	A	50	0.200	40	36.150	4.594	10	36.100	1.370	38	10	NDUFS1	intronic	NA
MB_Group4_T1--3	chr2:206995140	G	A	76	0.079	70	35.600	4.906	6	34.167	4.021	66	5	NDUFS1	intronic	NA
MB_Group4_T1--4	chr2:206995140	G	A	20	0.050	18	37.444	2.749	1	33.000	0.000	18	1	NDUFS1	intronic	NA
MB_Group4_T1--5	chr2:206995140	G	A	89	0.213	68	35.397	7.038	19	32.158	7.112	62	16	NDUFS1	intronic	NA
MB_Group4_T1--6	chr2:206995140	G	A	24	0.167	20	35.050	4.774	4	35.500	1.732	16	4	NDUFS1	intronic	NA
MB_Group4_T1--GL	chr2:206995140	G	NA	56	0	55	37.600	3.451	0	0	0	54	0	NDUFS1	intronic	NA
MB_Group4_T1--1	chr2:206995141	T	C	41	0.146	35	35.200	5.109	6	36.000	1.673	31	6	NDUFS1	intronic	NA
MB_Group4_T1--2	chr2:206995141	T	C	51	0.235	39	36.231	4.487	12	37.167	0.577	36	12	NDUFS1	intronic	NA
MB_Group4_T1--3	chr2:206995141	T	C	68	0.088	61	35.672	4.490	6	35.667	2.422	54	6	NDUFS1	intronic	NA
MB_Group4_T1--4	chr2:206995141	T	C	19	0.053	18	37.778	2.691	1	37.000	0.000	18	1	NDUFS1	intronic	NA
MB_Group4_T1--5	chr2:206995141	T	C	88	0.227	68	35.926	4.605	20	35.150	2.870	61	19	NDUFS1	intronic	NA
MB_Group4_T1--6	chr2:206995141	T	C	23	0.217	18	35.222	5.024	5	36.600	0.894	17	5	NDUFS1	intronic	NA
MB_Group4_T1--GL	chr2:206995141	T	NA	54	0	54	37.148	4.345	0	0	0	51	0	NDUFS1	intronic	NA
MB_Group4_T1--1	chr2:209049773	C	NA	20	0	20	36.750	4.734	0	0	0	17	0	C2orf80	intronic	NA
MB_Group4_T1--2	chr2:209049773	C	A	28	0.143	24	37.917	3.147	4	37.750	2.754	24	4	C2orf80	intronic	NA
MB_Group4_T1--3	chr2:209049773	C	NA	38	0	37	37.243	4.924	0	0	0	36	0	C2orf80	intronic	NA
MB_Group4_T1--4	chr2:209049773	C	NA	14	0	14	36.643	4.668	0	0	0	13	0	C2orf80	intronic	NA
MB_Group4_T1--5	chr2:209049773	C	NA	23	0	22	37.409	3.608	0	0	0	22	0	C2orf80	intronic	NA
MB_Group4_T1--6	chr2:209049773	C	NA	21	0	21	36.619	4.056	0	0	0	20	0	C2orf80	intronic	NA
MB_Group4_T1--GL	chr2:209049773	C	NA	68	0	68	37.868	3.350	0	0	0	66	0	C2orf80	intronic	NA
MB_Group4_T1--1	chr2:211477070	C	A	30	0.133	26	37.500	2.642	4	38.500	2.517	26	4	CPS1	intronic	NA
MB_Group4_T1--2	chr2:211477070	C	NA	39	0	39	37.667	3.247	0	0	0	39	0	CPS1	intronic	NA
MB_Group4_T1--3	chr2:211477070	C	NA	72	0	72	36.403	4.761	0	0	0	68	0	CPS1	intronic	NA
MB_Group4_T1--4	chr2:211477070	C	NA	25	0	25	36.800	3.416	0	0	0	24	0	CPS1	intronic	NA
MB_Group4_T1--5	chr2:211477070	C	NA	18	0	18	37.333	2.890	0	0	0	18	0	CPS1	intronic	NA
MB_Group4_T1--6	chr2:211477070	C	NA	18	0	18	35.889	5.335	0	0	0	16	0	CPS1	intronic	NA
MB_Group4_T1--GL	chr2:211477070	C	NA	108	0	108	36.861	3.631	0	0	0	105	0	CPS1	intronic	NA
MB_Group4_T1--1	chr2:21239623	A	G	34	0.059	32	36.875	5.587	2	37.000	0.000	30	2	APOB	intronic	NA
MB_Group4_T1--2	chr2:21239623	A	G	40	0.225	31	35.903	7.035	9	37.778	1.202	27	9	APOB	intronic	NA
MB_Group4_T1--3	chr2:21239623	A	G	54	0.037	52	38.135	4.015	2	37.000	0.000	50	2	APOB	intronic	NA
MB_Group4_T1--4	chr2:21239623	A	G	22	0.091	20	36.200	3.548	2	34.000	1.414	20	2	APOB	intronic	NA
MB_Group4_T1--5	chr2:21239623	A	G	87	0.057	82	37.927	4.632	5	37.000	0.000	77	5	APOB	intronic	NA
MB_Group4_T1--6	chr2:21239623	A	G	10	0.200	8	37.625	3.378	2	21.500	21.920	8	1	APOB	intronic	NA
MB_Group4_T1--GL	chr2:21239623	A	NA	40	0	40	37.750	6.134	0	0	0	38	0	APOB	intronic	NA
MB_Group4_T1--1	chr2:215807696	C	A	50	0.200	40	37.275	3.929	10	38.000	2.539	38	10	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--2	chr2:215807696	C	A	36	0.111	32	37.125	3.367	4	38.250	3.403	31	4	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--3	chr2:215807696	C	A	91	0.022	89	37.337	5.121	2	37.500	3.536	85	2	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--4	chr2:215807696	C	NA	29	0	29	37.138	6.004	0	0	0	26	0	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--5	chr2:215807696	C	NA	33	0	33	38.121	2.747	0	0	0	32	0	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--6	chr2:215807696	C	NA	27	0	27	36.926	4.557	0	0	0	26	0	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--GL	chr2:215807696	C	NA	171	0	171	37.240	3.910	0	0	0	163	0	ABCA12	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:215815498	A	G	19	0.158	16	37.812	2.428	3	37.333	2.517	16	3	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--2	chr2:215815498	A	G	27	0.074	25	38.520	2.417	2	37.000	0.000	25	2	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--3	chr2:215815498	A	G	58	0.017	57	38.298	3.053	1	31.000	0.000	56	1	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--4	chr2:215815498	A	G	14	0.071	13	36.308	4.803	1	31.000	0.000	12	1	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--5	chr2:215815498	A	G	31	0.161	25	36.800	6.131	5	36.600	1.517	22	5	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--6	chr2:215815498	A	G	11	0.091	10	38.400	1.955	1	35.000	0.000	10	1	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--GL	chr2:215815498	A	NA	56	0	56	38.946	2.753	0	0	0	55	0	AC072062.1	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:18643134	A	G	24	0.167	19	35.895	4.581	4	37.500	2.517	17	4	USP18	intronic	NA
MB_Group4_T1--2	chr22:18643134	A	G	33	0.091	30	36.900	2.482	3	37.000	0.000	29	3	USP18	intronic	NA
MB_Group4_T1--3	chr22:18643134	A	NA	79	0	79	36.532	3.738	0	0	0	76	0	USP18	intronic	NA
MB_Group4_T1--4	chr22:18643134	A	NA	13	0	12	35.750	2.379	0	0	0	12	0	USP18	intronic	NA
MB_Group4_T1--5	chr22:18643134	A	G	101	0.059	94	36.479	4.292	6	35.833	3.817	87	6	USP18	intronic	NA
MB_Group4_T1--6	chr22:18643134	A	G	18	0.056	16	34.625	4.759	1	33.000	0.000	15	1	USP18	intronic	NA
MB_Group4_T1--GL	chr22:18643134	A	NA	49	0	49	36.510	4.139	0	0	0	48	0	USP18	intronic	NA
MB_Group4_T1--1	chr22:25121523	T	C	18	0.222	14	38.143	4.222	4	38.500	3.000	13	4	PIWIL3	intronic	NA
MB_Group4_T1--2	chr22:25121523	T	NA	18	0	18	39.056	2.413	0	0	0	18	0	PIWIL3	intronic	NA
MB_Group4_T1--3	chr22:25121523	T	C	38	0.053	36	36.889	4.234	2	35.000	2.828	35	2	PIWIL3	intronic	NA
MB_Group4_T1--4	chr22:25121523	T	NA	14	0	14	39.357	2.341	0	0	0	14	0	PIWIL3	intronic	NA
MB_Group4_T1--5	chr22:25121523	T	NA	14	0	14	36.714	4.250	0	0	0	13	0	PIWIL3	intronic	NA
MB_Group4_T1--6	chr22:25121523	T	NA	20	0	20	37.700	3.230	0	0	0	19	0	PIWIL3	intronic	NA
MB_Group4_T1--GL	chr22:25121523	T	NA	37	0	37	37.000	4.435	0	0	0	35	0	PIWIL3	intronic	NA
MB_Group4_T1--1	chr22:25124168	T	A	27	0.333	18	36.889	4.676	9	36.333	5.148	15	8	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--2	chr22:25124168	T	NA	26	0	26	37.000	4.299	0	0	0	24	0	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--3	chr22:25124168	T	A	76	0.013	75	36.693	5.673	1	36.000	0.000	69	1	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--4	chr22:25124168	T	NA	17	0	17	37.588	3.954	0	0	0	16	0	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--5	chr22:25124168	T	NA	27	0	27	38.296	3.338	0	0	0	26	0	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--6	chr22:25124168	T	NA	14	0	14	38.071	2.895	0	0	0	14	0	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--GL	chr22:25124168	T	NA	92	0	92	37.120	4.923	0	0	0	89	0	PIWIL3	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:227924842	C	A	31	0.032	30	35.967	3.211	1	39.000	0.000	29	1	COL4A4	intronic	NA
MB_Group4_T1--2	chr2:227924842	C	NA	35	0	35	34.971	4.232	0	0	0	33	0	COL4A4	intronic	NA
MB_Group4_T1--3	chr2:227924842	C	A	53	0.151	45	35.333	4.729	8	35.000	0.000	43	8	COL4A4	intronic	NA
MB_Group4_T1--4	chr2:227924842	C	A	22	0.227	17	35.000	6.195	5	35.000	0.000	15	5	COL4A4	intronic	NA
MB_Group4_T1--5	chr2:227924842	C	A	26	0.077	24	34.917	1.816	2	35.000	0.000	24	2	COL4A4	intronic	NA
MB_Group4_T1--6	chr2:227924842	C	A	11	0.273	8	36.500	2.268	3	35.000	0.000	8	3	COL4A4	intronic	NA
MB_Group4_T1--GL	chr2:227924842	C	NA	60	0	59	35.441	4.764	0	0	0	55	0	COL4A4	intronic	NA
MB_Group4_T1--1	chr22:28192914	C	NA	18	0	18	36.556	3.294	0	0	0	17	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--2	chr22:28192914	C	NA	19	0	19	35.737	4.053	0	0	0	18	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--3	chr22:28192914	C	NA	85	0	85	35.365	3.712	0	0	0	79	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--4	chr22:28192914	C	NA	10	0	10	35.900	2.767	0	0	0	10	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--5	chr22:28192914	C	NA	57	0	57	35.053	4.482	0	0	0	53	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--6	chr22:28192914	C	A	14	0.214	11	35.909	1.758	3	33.667	3.512	11	3	MN1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr22:28192914	C	NA	47	0	47	33.447	8.105	0	0	0	40	0	MN1	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:233392022	G	A	53	0.283	36	34.833	5.240	15	35.600	3.869	32	13	CHRND	intronic	NA
MB_Group4_T1--2	chr2:233392022	G	A	40	0.025	36	33.833	6.116	1	41.000	0.000	29	1	CHRND	intronic	NA
MB_Group4_T1--3	chr2:233392022	G	NA	105	0	94	33.543	5.764	0	0	0	74	0	CHRND	intronic	NA
MB_Group4_T1--4	chr2:233392022	G	A	25	0.200	19	33.684	6.351	5	35.000	1.871	16	5	CHRND	intronic	NA
MB_Group4_T1--5	chr2:233392022	G	A	110	0.027	103	33.816	5.829	3	35.000	0.000	86	3	CHRND	intronic	NA
MB_Group4_T1--6	chr2:233392022	G	A	24	0.333	16	33.625	5.818	8	34.500	2.070	13	8	CHRND	intronic	NA
MB_Group4_T1--GL	chr2:233392022	G	NA	37	0	35	33.429	8.637	0	0	0	28	0	CHRND	intronic	NA
MB_Group4_T1--1	chr2:233392215	A	G	37	0.270	27	36.889	4.734	10	36.100	2.025	24	10	CHRND	intronic	NA
MB_Group4_T1--2	chr2:233392215	A	G	34	0.059	32	36.688	3.393	2	34.000	4.243	31	2	CHRND	intronic	NA
MB_Group4_T1--3	chr2:233392215	A	G	107	0.009	106	36.623	4.716	1	37.000	0.000	101	1	CHRND	intronic	NA
MB_Group4_T1--4	chr2:233392215	A	G	18	0.111	16	35.938	5.627	2	37.000	0.000	15	2	CHRND	intronic	NA
MB_Group4_T1--5	chr2:233392215	A	G	109	0.083	100	36.470	4.487	9	36.778	0.667	95	9	CHRND	intronic	NA
MB_Group4_T1--6	chr2:233392215	A	G	22	0.091	20	36.450	3.426	2	37.000	0.000	20	2	CHRND	intronic	NA
MB_Group4_T1--GL	chr2:233392215	A	NA	34	0	34	36.853	3.173	0	0	0	33	0	CHRND	intronic	NA
MB_Group4_T1--1	chr2:234545506	C	NA	21	0	21	37.476	2.926	0	0	0	21	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:234545506	C	NA	20	0	20	38.200	2.840	0	0	0	20	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:234545506	C	NA	67	0	67	36.687	4.405	0	0	0	64	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:234545506	C	A	15	0.200	12	35.250	6.744	3	35.333	4.509	10	3	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:234545506	C	NA	16	0	16	37.125	3.931	0	0	0	16	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:234545506	C	NA	12	0	12	36.417	3.397	0	0	0	12	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:234545506	C	NA	72	0	72	37.403	3.270	0	0	0	72	0	UGT1A10	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr22:37494289	C	A	16	0.188	13	33.154	9.703	3	35.333	4.041	10	3	TMPRSS6	intronic	NA
MB_Group4_T1--2	chr22:37494289	C	NA	15	0	15	36.800	6.538	0	0	0	13	0	TMPRSS6	intronic	NA
MB_Group4_T1--3	chr22:37494289	C	NA	117	0	117	38.128	3.007	0	0	0	115	0	TMPRSS6	intronic	NA
MB_Group4_T1--4	chr22:37494289	C	A	15	0.067	14	35.071	4.428	1	39.000	0.000	12	1	TMPRSS6	intronic	NA
MB_Group4_T1--5	chr22:37494289	C	NA	77	0	77	36.442	5.347	0	0	0	72	0	TMPRSS6	intronic	NA
MB_Group4_T1--6	chr22:37494289	C	NA	12	0	12	34.750	8.740	0	0	0	11	0	TMPRSS6	intronic	NA
MB_Group4_T1--GL	chr22:37494289	C	NA	37	0	37	37.757	2.948	0	0	0	37	0	TMPRSS6	intronic	NA
MB_Group4_T1--1	chr2:238436179	C	NA	34	0	34	37.559	3.341	0	0	0	33	0	MLPH	intronic	NA
MB_Group4_T1--2	chr2:238436179	C	NA	36	0	35	37.829	3.356	0	0	0	34	0	MLPH	intronic	NA
MB_Group4_T1--3	chr2:238436179	C	NA	98	0	98	36.704	4.825	0	0	0	90	0	MLPH	intronic	NA
MB_Group4_T1--4	chr2:238436179	C	NA	20	0	20	37.450	3.953	0	0	0	19	0	MLPH	intronic	NA
MB_Group4_T1--5	chr2:238436179	C	T	43	0.163	35	36.857	3.107	7	36.571	3.047	34	7	MLPH	intronic	NA
MB_Group4_T1--6	chr2:238436179	C	NA	13	0	13	37.462	3.307	0	0	0	13	0	MLPH	intronic	NA
MB_Group4_T1--GL	chr2:238436179	C	NA	99	0	99	36.909	4.099	0	0	0	93	0	MLPH	intronic	NA
MB_Group4_T1--1	chr22:38934782	A	G	46	0.217	36	35.611	4.190	10	36.900	2.767	32	10	DMC1	intronic	NA
MB_Group4_T1--2	chr22:38934782	A	G	50	0.080	46	37.326	3.205	4	37.500	1.915	45	4	DMC1	intronic	NA
MB_Group4_T1--3	chr22:38934782	A	G	71	0.028	69	35.609	5.483	2	37.000	0.000	62	2	DMC1	intronic	NA
MB_Group4_T1--4	chr22:38934782	A	G	35	0.114	31	35.871	5.626	4	37.000	0.000	29	4	DMC1	intronic	NA
MB_Group4_T1--5	chr22:38934782	A	G	95	0.042	91	35.297	5.605	4	34.500	2.082	83	4	DMC1	intronic	NA
MB_Group4_T1--6	chr22:38934782	A	G	30	0.100	27	35.519	6.423	3	35.000	8.718	25	2	DMC1	intronic	NA
MB_Group4_T1--GL	chr22:38934782	A	NA	56	0	55	37.582	2.630	0	0	0	55	0	DMC1	intronic	NA
MB_Group4_T1--1	chr2:239157543	G	A	28	0.071	25	37.400	3.819	2	37.000	0.000	24	2	PER2	intronic	NA
MB_Group4_T1--2	chr2:239157543	G	A	23	0.174	19	36.737	5.465	4	38.000	2.000	17	4	PER2	intronic	NA
MB_Group4_T1--3	chr2:239157543	G	A	90	0.044	86	36.919	5.769	4	37.000	0.000	81	4	PER2	intronic	NA
MB_Group4_T1--4	chr2:239157543	G	NA	13	0	12	36.500	3.656	0	0	0	11	0	PER2	intronic	NA
MB_Group4_T1--5	chr2:239157543	G	A	87	0.092	78	37.013	5.497	8	33.250	9.453	72	7	PER2	intronic	NA
MB_Group4_T1--6	chr2:239157543	G	NA	10	0	10	34.900	6.315	0	0	0	8	0	PER2	intronic	NA
MB_Group4_T1--GL	chr2:239157543	G	NA	37	0	37	36.838	5.252	0	0	0	35	0	PER2	intronic	NA
MB_Group4_T1--1	chr2:239258062	C	NA	29	0	29	34.000	6.969	0	0	0	25	0	TRAF3IP1	intronic	NA
MB_Group4_T1--2	chr2:239258062	C	NA	23	0	23	34.478	6.059	0	0	0	21	0	TRAF3IP1	intronic	NA
MB_Group4_T1--3	chr2:239258062	C	NA	95	0	95	35.926	4.434	0	0	0	90	0	TRAF3IP1	intronic	NA
MB_Group4_T1--4	chr2:239258062	C	A	12	0.250	9	36.889	3.480	3	36.333	4.041	9	3	TRAF3IP1	intronic	NA
MB_Group4_T1--5	chr2:239258062	C	NA	37	0	37	36.595	3.312	0	0	0	37	0	TRAF3IP1	intronic	NA
MB_Group4_T1--6	chr2:239258062	C	NA	23	0	23	35.348	5.033	0	0	0	21	0	TRAF3IP1	intronic	NA
MB_Group4_T1--GL	chr2:239258062	C	NA	66	0	66	36.379	4.430	0	0	0	63	0	TRAF3IP1	intronic	NA
MB_Group4_T1--1	chr22:39353661	G	NA	24	0	24	37.667	3.144	0	0	0	24	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--2	chr22:39353661	G	NA	11	0	11	35.636	3.009	0	0	0	11	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--3	chr22:39353661	G	NA	90	0	90	36.011	3.056	0	0	0	87	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--4	chr22:39353661	G	NA	17	0	16	37.000	2.733	0	0	0	16	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--5	chr22:39353661	G	NA	42	0	41	34.854	7.585	0	0	0	37	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--6	chr22:39353661	G	C	12	0.250	9	34.667	7.263	3	34.333	3.512	8	3	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--GL	chr22:39353661	G	NA	50	0	50	35.660	3.788	0	0	0	46	0	APOBEC3A,APOBEC3A_B	UTR5	NA
MB_Group4_T1--1	chr22:39358703	G	A	18	0.056	17	36.706	6.101	1	35.000	0.000	15	1	APOBEC3A	UTR3	NA
MB_Group4_T1--2	chr22:39358703	G	NA	26	0	26	35.115	6.959	0	0	0	24	0	APOBEC3A	UTR3	NA
MB_Group4_T1--3	chr22:39358703	G	NA	94	0	93	36.065	4.761	0	0	0	86	0	APOBEC3A	UTR3	NA
MB_Group4_T1--4	chr22:39358703	G	NA	15	0	15	31.933	9.765	0	0	0	12	0	APOBEC3A	UTR3	NA
MB_Group4_T1--5	chr22:39358703	G	NA	103	0	103	35.854	5.020	0	0	0	95	0	APOBEC3A	UTR3	NA
MB_Group4_T1--6	chr22:39358703	G	A	19	0.211	15	35.400	4.626	4	35.000	1.633	14	4	APOBEC3A	UTR3	NA
MB_Group4_T1--GL	chr22:39358703	G	NA	48	0	48	35.896	4.790	0	0	0	43	0	APOBEC3A	UTR3	NA
MB_Group4_T1--1	chr22:39918195	C	NA	18	0	18	36.556	3.944	0	0	0	16	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--2	chr22:39918195	C	A	15	0.200	12	37.833	3.713	3	34.667	1.155	12	3	ATF4	exonic	stopgain_SNV
MB_Group4_T1--3	chr22:39918195	C	NA	129	0	129	38.248	3.082	0	0	0	126	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--4	chr22:39918195	C	NA	15	0	15	37.933	3.058	0	0	0	15	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--5	chr22:39918195	C	NA	109	0	109	36.991	4.512	0	0	0	104	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--6	chr22:39918195	C	NA	15	0	15	36.067	4.431	0	0	0	14	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--GL	chr22:39918195	C	NA	44	0	44	37.591	5.824	0	0	0	40	0	ATF4	exonic	stopgain_SNV
MB_Group4_T1--1	chr22:41569882	A	G	20	0.250	15	35.400	9.956	5	37.000	0.000	12	5	EP300	intronic	NA
MB_Group4_T1--2	chr22:41569882	A	G	23	0.043	22	36.455	7.469	1	37.000	0.000	21	1	EP300	intronic	NA
MB_Group4_T1--3	chr22:41569882	A	G	73	0.151	62	38.387	3.149	11	35.636	5.591	61	10	EP300	intronic	NA
MB_Group4_T1--4	chr22:41569882	A	NA	10	0	10	35.700	4.191	0	0	0	9	0	EP300	intronic	NA
MB_Group4_T1--5	chr22:41569882	A	G	70	0.229	53	38.698	3.196	16	36.062	1.769	51	16	EP300	intronic	NA
MB_Group4_T1--6	chr22:41569882	A	NA	18	0	18	37.556	3.552	0	0	0	18	0	EP300	intronic	NA
MB_Group4_T1--GL	chr22:41569882	A	NA	63	0	63	38.095	3.339	0	0	0	62	0	EP300	intronic	NA
MB_Group4_T1--1	chr22:41586293	G	C	22	0.136	18	33.667	3.199	3	35.667	1.155	17	3	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--2	chr22:41586293	G	C	37	0.162	30	34.433	5.710	6	33.333	3.724	28	5	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--3	chr22:41586293	G	C	68	0.103	61	34.984	3.699	7	36.429	0.976	58	7	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--4	chr22:41586293	G	C	19	0.211	15	34.467	4.533	4	34.000	2.449	14	4	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--5	chr22:41586293	G	C	74	0.189	58	35.155	5.767	14	35.357	1.906	52	14	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--6	chr22:41586293	G	C	19	0.211	15	35.867	3.720	4	32.750	7.228	14	3	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--GL	chr22:41586293	G	NA	52	0	51	33.922	6.523	0	0	0	45	0	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:41586294	C	T	22	0.136	19	33.053	4.089	3	35.000	0.000	15	3	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--2	chr22:41586294	C	T	37	0.162	31	36.065	3.530	6	31.667	6.683	29	4	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--3	chr22:41586294	C	T	68	0.103	61	35.557	4.689	7	36.429	0.976	56	7	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--4	chr22:41586294	C	T	19	0.211	15	35.067	4.652	4	30.500	10.376	14	3	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--5	chr22:41586294	C	T	74	0.203	59	35.966	5.684	15	31.933	9.208	55	13	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--6	chr22:41586294	C	T	19	0.211	15	36.467	3.543	4	36.000	1.155	15	4	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--GL	chr22:41586294	C	NA	52	0	52	33.981	7.053	0	0	0	46	0	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:41586316	C	T	17	0.059	16	33.688	3.610	1	37.000	0.000	15	1	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--2	chr22:41586316	C	T	22	0.136	19	33.947	3.778	3	34.333	4.619	17	2	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--3	chr22:41586316	C	T	59	0.034	56	34.786	3.764	2	37.000	0.000	53	2	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--4	chr22:41586316	C	T	14	0.071	13	34.077	3.201	1	33.000	0.000	12	1	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--5	chr22:41586316	C	T	53	0.189	43	34.047	6.306	10	36.600	0.843	38	10	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--6	chr22:41586316	C	NA	15	0	15	35.667	2.690	0	0	0	15	0	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--GL	chr22:41586316	C	NA	49	0	49	33.796	4.852	0	0	0	44	0	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:41586317	C	G	17	0.059	16	33.750	2.864	1	37.000	0.000	15	1	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--2	chr22:41586317	C	G	22	0.136	19	34.895	2.307	3	36.333	1.155	19	3	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--3	chr22:41586317	C	G	59	0.034	57	35.193	3.096	2	37.000	0.000	55	2	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--4	chr22:41586317	C	G	14	0.071	13	34.154	3.716	1	37.000	0.000	12	1	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--5	chr22:41586317	C	G	53	0.189	43	34.814	4.802	10	35.900	2.234	41	10	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--6	chr22:41586317	C	G	15	0.067	14	35.429	2.875	1	37.000	0.000	14	1	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--GL	chr22:41586317	C	NA	48	0	48	34.500	3.776	0	0	0	44	0	LOC101927279	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:44967846	C	NA	27	0	27	36.407	4.854	0	0	0	25	0	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--2	chr22:44967846	C	NA	27	0	27	35.519	5.366	0	0	0	23	0	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--3	chr22:44967846	C	NA	62	0	62	36.984	3.356	0	0	0	61	0	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--4	chr22:44967846	C	NA	17	0	17	36.412	2.785	0	0	0	17	0	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--5	chr22:44967846	C	A	43	0.023	42	35.476	6.013	1	35.000	0.000	39	1	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--6	chr22:44967846	C	A	12	0.250	9	37.667	2.693	3	35.000	4.583	9	3	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--GL	chr22:44967846	C	NA	69	0	69	34.986	6.045	0	0	0	60	0	LINC00207	ncRNA_intronic	NA
MB_Group4_T1--1	chr22:50655259	C	NA	19	0	19	35.474	6.113	0	0	0	16	0	SELO	exonic	unknown
MB_Group4_T1--2	chr22:50655259	C	NA	22	0	22	33.864	7.292	0	0	0	18	0	SELO	exonic	unknown
MB_Group4_T1--3	chr22:50655259	C	NA	125	0	125	35.608	5.218	0	0	0	107	0	SELO	exonic	unknown
MB_Group4_T1--4	chr22:50655259	C	NA	14	0	14	33.214	10.650	0	0	0	11	0	SELO	exonic	unknown
MB_Group4_T1--5	chr22:50655259	C	NA	99	0	99	36.737	4.487	0	0	0	91	0	SELO	exonic	unknown
MB_Group4_T1--6	chr22:50655259	C	A	11	0.273	8	37.250	5.339	3	33.667	6.429	7	2	SELO	exonic	unknown
MB_Group4_T1--GL	chr22:50655259	C	NA	50	0	50	36.000	5.190	0	0	0	46	0	SELO	exonic	unknown
MB_Group4_T1--1	chr2:26409117	C	NA	20	0	20	35.700	4.646	0	0	0	19	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--2	chr2:26409117	C	NA	34	0	34	35.324	5.618	0	0	0	30	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--3	chr2:26409117	C	NA	76	0	76	36.026	3.386	0	0	0	75	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--4	chr2:26409117	C	T	14	0.214	11	36.364	5.124	3	33.333	7.638	10	2	GAREML	exonic	synonymous_SNV
MB_Group4_T1--5	chr2:26409117	C	NA	77	0	76	35.566	4.568	0	0	0	70	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--6	chr2:26409117	C	NA	15	0	15	36.467	4.086	0	0	0	14	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--GL	chr2:26409117	C	NA	39	0	39	36.231	5.065	0	0	0	37	0	GAREML	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:26506131	G	A	42	0.024	41	36.122	5.802	1	34.000	0.000	36	1	HADHB	intronic	NA
MB_Group4_T1--2	chr2:26506131	G	A	30	0.067	28	34.000	6.722	2	37.000	0.000	25	2	HADHB	intronic	NA
MB_Group4_T1--3	chr2:26506131	G	NA	76	0	76	35.105	5.887	0	0	0	68	0	HADHB	intronic	NA
MB_Group4_T1--4	chr2:26506131	G	NA	22	0	22	34.864	5.890	0	0	0	17	0	HADHB	intronic	NA
MB_Group4_T1--5	chr2:26506131	G	NA	98	0	97	35.784	5.549	0	0	0	91	0	HADHB	intronic	NA
MB_Group4_T1--6	chr2:26506131	G	A	20	0.200	16	35.938	4.281	4	34.500	3.786	16	3	HADHB	intronic	NA
MB_Group4_T1--GL	chr2:26506131	G	NA	54	0	54	35.278	6.239	0	0	0	48	0	HADHB	intronic	NA
MB_Group4_T1--1	chr2:26506158	C	T	33	0.333	21	37.476	3.907	11	36.818	1.079	20	11	HADHB	intronic	NA
MB_Group4_T1--2	chr2:26506158	C	T	15	0.333	10	36.200	4.940	5	32.800	8.319	9	4	HADHB	intronic	NA
MB_Group4_T1--3	chr2:26506158	C	T	57	0.070	53	37.189	5.004	4	37.000	0.000	47	4	HADHB	intronic	NA
MB_Group4_T1--4	chr2:26506158	C	T	13	0.231	10	37.400	2.716	3	37.000	0.000	10	3	HADHB	intronic	NA
MB_Group4_T1--5	chr2:26506158	C	T	81	0.235	62	35.694	7.405	19	33.316	8.334	53	16	HADHB	intronic	NA
MB_Group4_T1--6	chr2:26506158	C	T	10	0.100	9	36.778	6.241	1	37.000	0.000	8	1	HADHB	intronic	NA
MB_Group4_T1--GL	chr2:26506158	C	NA	34	0	34	38.412	3.026	0	0	0	34	0	HADHB	intronic	NA
MB_Group4_T1--1	chr2:26689401	A	C	21	0.143	18	35.111	3.216	3	37.667	1.155	17	3	OTOF	intronic	NA
MB_Group4_T1--2	chr2:26689401	A	C	13	0.154	11	38.000	2.449	2	37.000	0.000	11	2	OTOF	intronic	NA
MB_Group4_T1--3	chr2:26689401	A	C	108	0.056	101	35.545	4.504	6	36.167	1.329	93	6	OTOF	intronic	NA
MB_Group4_T1--4	chr2:26689401	A	NA	12	0	12	36.083	3.118	0	0	0	11	0	OTOF	intronic	NA
MB_Group4_T1--5	chr2:26689401	A	C	101	0.248	74	35.986	3.501	25	37.160	2.749	70	24	OTOF	intronic	NA
MB_Group4_T1--6	chr2:26689401	A	C	17	0.294	12	35.417	5.931	5	35.400	2.608	10	5	OTOF	intronic	NA
MB_Group4_T1--GL	chr2:26689401	A	NA	36	0	36	36.278	3.453	0	0	0	34	0	OTOF	intronic	NA
MB_Group4_T1--1	chr2:39485320	A	NA	11	0	7	36.143	5.146	0	0	0	6	0	MAP4K3	intronic	NA
MB_Group4_T1--2	chr2:39485320	A	G	23	0.217	18	36.611	4.327	5	34.200	0.447	17	5	MAP4K3	intronic	NA
MB_Group4_T1--3	chr2:39485320	A	G	41	0.195	33	37.697	4.991	8	33.000	2.070	31	8	MAP4K3	intronic	NA
MB_Group4_T1--4	chr2:39485320	A	G	18	0.111	16	38.000	2.944	2	31.000	0.000	16	2	MAP4K3	intronic	NA
MB_Group4_T1--5	chr2:39485320	A	G	62	0.581	25	37.360	4.281	36	33.472	1.612	23	36	MAP4K3	intronic	NA
MB_Group4_T1--6	chr2:39485320	A	G	11	0.273	8	34.000	11.110	3	35.000	1.732	7	3	MAP4K3	intronic	NA
MB_Group4_T1--GL	chr2:39485320	A	NA	34	0	34	37.029	4.145	0	0	0	33	0	MAP4K3	intronic	NA
MB_Group4_T1--1	chr2:39485324	T	NA	11	0	7	36.714	5.438	0	0	0	6	0	MAP4K3	intronic	NA
MB_Group4_T1--2	chr2:39485324	T	C	23	0.217	18	37.833	3.167	5	36.200	1.789	18	5	MAP4K3	intronic	NA
MB_Group4_T1--3	chr2:39485324	T	C	43	0.209	34	38.412	3.394	9	36.333	1.414	33	9	MAP4K3	intronic	NA
MB_Group4_T1--4	chr2:39485324	T	C	19	0.105	17	39.000	2.062	2	37.000	0.000	17	2	MAP4K3	intronic	NA
MB_Group4_T1--5	chr2:39485324	T	C	62	0.597	25	38.720	3.129	37	36.189	2.012	24	36	MAP4K3	intronic	NA
MB_Group4_T1--6	chr2:39485324	T	C	11	0.273	8	36.250	4.950	3	36.000	1.732	7	3	MAP4K3	intronic	NA
MB_Group4_T1--GL	chr2:39485324	T	NA	35	0	35	37.629	4.899	0	0	0	33	0	MAP4K3	intronic	NA
MB_Group4_T1--1	chr2:44541024	T	NA	64	0	64	38.547	3.111	0	0	0	63	0	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--2	chr2:44541024	T	NA	53	0	53	38.604	4.793	0	0	0	52	0	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--3	chr2:44541024	T	G	148	0.014	146	38.596	4.431	2	40.500	0.707	141	2	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--4	chr2:44541024	T	NA	46	0	46	38.696	2.375	0	0	0	46	0	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--5	chr2:44541024	T	NA	36	0	36	37.167	4.681	0	0	0	34	0	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--6	chr2:44541024	T	G	37	0.135	32	38.438	2.983	5	37.000	4.062	32	5	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--GL	chr2:44541024	T	NA	228	0	228	38.693	3.356	0	0	0	224	0	SLC3A1	exonic	synonymous_SNV
MB_Group4_T1--1	chr2:47221616	C	NA	25	0	25	37.200	2.754	0	0	0	25	0	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:47221616	C	A	29	0.138	25	35.600	2.415	4	37.750	3.202	25	4	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:47221616	C	NA	97	0	97	37.010	3.762	0	0	0	93	0	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:47221616	C	NA	11	0	11	36.364	2.976	0	0	0	11	0	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:47221616	C	A	32	0.031	31	37.129	2.895	1	35.000	0.000	31	1	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:47221616	C	NA	21	0	21	35.143	6.703	0	0	0	18	0	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:47221616	C	NA	57	0	57	36.281	3.835	0	0	0	55	0	TTC7A	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr2:62052993	C	T	33	0.030	32	37.156	3.802	1	37.000	0.000	31	1	FAM161A	UTR3	NA
MB_Group4_T1--2	chr2:62052993	C	T	39	0.051	37	36.486	2.912	2	37.000	0.000	37	2	FAM161A	UTR3	NA
MB_Group4_T1--3	chr2:62052993	C	T	104	0.154	87	36.782	4.004	16	36.438	1.209	85	16	FAM161A	UTR3	NA
MB_Group4_T1--4	chr2:62052993	C	NA	24	0	23	36.609	3.763	0	0	0	22	0	FAM161A	UTR3	NA
MB_Group4_T1--5	chr2:62052993	C	T	88	0.205	70	35.700	6.226	18	36.944	0.998	63	18	FAM161A	UTR3	NA
MB_Group4_T1--6	chr2:62052993	C	NA	10	0	10	34.600	2.716	0	0	0	10	0	FAM161A	UTR3	NA
MB_Group4_T1--GL	chr2:62052993	C	NA	105	0	104	36.413	4.757	0	0	0	100	0	FAM161A	UTR3	NA
MB_Group4_T1--1	chr2:85625866	C	NA	19	0	19	36.842	3.253	0	0	0	18	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--2	chr2:85625866	C	NA	12	0	12	37.833	3.010	0	0	0	12	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--3	chr2:85625866	C	NA	108	0	108	36.593	3.898	0	0	0	106	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--4	chr2:85625866	C	NA	13	0	13	36.769	3.086	0	0	0	13	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--5	chr2:85625866	C	NA	56	0	56	36.714	3.457	0	0	0	53	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--6	chr2:85625866	C	A	11	0.364	7	36.571	2.760	4	36.750	2.630	7	4	CAPG	exonic	stopgain_SNV
MB_Group4_T1--GL	chr2:85625866	C	NA	46	0	46	36.891	4.523	0	0	0	41	0	CAPG	exonic	stopgain_SNV
MB_Group4_T1--1	chr2:87303167	G	NA	26	0	26	35.615	3.477	0	0	0	25	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--2	chr2:87303167	G	NA	19	0	19	36.474	2.796	0	0	0	19	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--3	chr2:87303167	G	NA	51	0	51	35.255	3.660	0	0	0	47	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--4	chr2:87303167	G	A	15	0.200	11	34.727	8.284	3	33.333	0.577	10	3	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--5	chr2:87303167	G	NA	40	0	40	35.500	4.326	0	0	0	36	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--6	chr2:87303167	G	NA	11	0	11	35.000	4.171	0	0	0	10	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--GL	chr2:87303167	G	NA	37	0	37	35.811	4.294	0	0	0	36	0	LOC285074	ncRNA_exonic	NA
MB_Group4_T1--1	chr2:89091847	C	T	26	0.192	21	37.333	2.633	5	38.000	3.162	21	5	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--2	chr2:89091847	C	NA	23	0	23	34.870	6.384	0	0	0	21	0	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--3	chr2:89091847	C	NA	48	0	48	38.000	2.752	0	0	0	48	0	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--4	chr2:89091847	C	T	21	0.095	19	36.474	5.048	2	37.000	0.000	18	2	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--5	chr2:89091847	C	T	40	0.025	39	36.667	3.630	1	39.000	0.000	38	1	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--6	chr2:89091847	C	NA	13	0	13	36.846	5.080	0	0	0	12	0	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--GL	chr2:89091847	C	NA	50	0	50	37.100	4.315	0	0	0	48	0	ANKRD36BP2	ncRNA_intronic	NA
MB_Group4_T1--1	chr2:97810394	T	NA	40	0	40	36.900	5.453	0	0	0	39	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr2:97810394	T	NA	20	0	20	37.700	3.435	0	0	0	19	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr2:97810394	T	NA	67	0	67	37.910	3.957	0	0	0	65	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr2:97810394	T	NA	24	0	24	38.917	2.205	0	0	0	24	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr2:97810394	T	NA	10	0	10	39.100	2.378	0	0	0	10	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr2:97810394	T	A	13	0.231	10	37.500	4.767	3	36.333	3.215	9	3	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr2:97810394	T	NA	83	0	83	37.807	3.452	0	0	0	80	0	ANKRD36	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:124464314	A	G	56	0.214	44	37.068	3.824	12	35.500	2.195	42	12	UMPS	UTR3	NA
MB_Group4_T1--2	chr3:124464314	A	G	51	0.078	45	37.511	5.177	4	36.500	1.000	43	4	UMPS	UTR3	NA
MB_Group4_T1--3	chr3:124464314	A	G	144	0.042	137	37.423	5.341	6	33.500	3.728	129	5	UMPS	UTR3	NA
MB_Group4_T1--4	chr3:124464314	A	G	33	0.061	31	35.903	6.467	2	37.000	0.000	28	2	UMPS	UTR3	NA
MB_Group4_T1--5	chr3:124464314	A	G	99	0.111	87	36.322	6.932	11	34.636	2.618	79	11	UMPS	UTR3	NA
MB_Group4_T1--6	chr3:124464314	A	NA	25	0	25	36.880	5.199	0	0	0	22	0	UMPS	UTR3	NA
MB_Group4_T1--GL	chr3:124464314	A	NA	85	0	85	37.200	4.652	0	0	0	81	0	UMPS	UTR3	NA
MB_Group4_T1--1	chr3:124464315	G	A	57	0.228	44	37.068	5.809	13	36.615	0.961	41	13	UMPS	UTR3	NA
MB_Group4_T1--2	chr3:124464315	G	A	53	0.113	47	37.234	4.478	6	36.667	1.966	45	6	UMPS	UTR3	NA
MB_Group4_T1--3	chr3:124464315	G	A	147	0.048	139	37.871	3.710	7	32.286	9.945	134	6	UMPS	UTR3	NA
MB_Group4_T1--4	chr3:124464315	G	A	33	0.061	31	36.290	6.420	2	37.000	0.000	29	2	UMPS	UTR3	NA
MB_Group4_T1--5	chr3:124464315	G	A	104	0.125	90	36.411	6.451	13	34.462	4.352	85	11	UMPS	UTR3	NA
MB_Group4_T1--6	chr3:124464315	G	NA	26	0	25	37.120	3.370	0	0	0	25	0	UMPS	UTR3	NA
MB_Group4_T1--GL	chr3:124464315	G	NA	90	0	90	37.189	4.337	0	0	0	88	0	UMPS	UTR3	NA
MB_Group4_T1--1	chr3:128613993	T	C	25	0.280	18	36.444	2.955	7	36.714	0.756	18	7	ACAD9	intronic	NA
MB_Group4_T1--2	chr3:128613993	T	C	24	0.167	20	36.550	4.466	4	33.000	4.690	19	3	ACAD9	intronic	NA
MB_Group4_T1--3	chr3:128613993	T	C	110	0.164	92	37.533	4.142	18	36.778	0.647	89	18	ACAD9	intronic	NA
MB_Group4_T1--4	chr3:128613993	T	C	14	0.214	11	37.000	2.793	3	37.000	0.000	11	3	ACAD9	intronic	NA
MB_Group4_T1--5	chr3:128613993	T	C	99	0.192	79	37.823	4.221	19	36.579	1.071	77	19	ACAD9	intronic	NA
MB_Group4_T1--6	chr3:128613993	T	C	14	0.143	12	37.500	2.908	2	37.000	0.000	12	2	ACAD9	intronic	NA
MB_Group4_T1--GL	chr3:128613993	T	NA	34	0	34	37.441	3.727	0	0	0	32	0	ACAD9	intronic	NA
MB_Group4_T1--1	chr3:128613995	C	T	25	0.320	17	36.529	4.665	8	36.375	1.768	15	8	ACAD9	intronic	NA
MB_Group4_T1--2	chr3:128613995	C	T	24	0.167	20	36.750	4.734	4	32.500	5.447	18	3	ACAD9	intronic	NA
MB_Group4_T1--3	chr3:128613995	C	T	111	0.162	93	37.409	4.352	18	36.778	0.647	89	18	ACAD9	intronic	NA
MB_Group4_T1--4	chr3:128613995	C	T	14	0.214	11	37.909	2.119	3	37.000	0.000	11	3	ACAD9	intronic	NA
MB_Group4_T1--5	chr3:128613995	C	T	99	0.192	80	38.700	2.683	19	36.684	0.749	79	19	ACAD9	intronic	NA
MB_Group4_T1--6	chr3:128613995	C	T	14	0.143	12	36.583	3.630	2	34.500	3.536	11	2	ACAD9	intronic	NA
MB_Group4_T1--GL	chr3:128613995	C	NA	36	0	35	37.514	3.526	0	0	0	34	0	ACAD9	intronic	NA
MB_Group4_T1--1	chr3:129290443	C	NA	28	0	28	37.179	3.869	0	0	0	27	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--2	chr3:129290443	C	NA	20	0	20	38.800	2.949	0	0	0	20	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--3	chr3:129290443	C	NA	167	0	167	37.647	3.665	0	0	0	162	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--4	chr3:129290443	C	A	13	0.231	10	36.200	5.453	3	34.000	2.646	9	3	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--5	chr3:129290443	C	NA	113	0	113	37.504	3.933	0	0	0	110	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--6	chr3:129290443	C	NA	20	0	20	36.750	4.077	0	0	0	18	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--GL	chr3:129290443	C	NA	42	0	42	38.024	3.317	0	0	0	40	0	PLXND1(NM_015103:exon18:c.3246-1G>T)	splicing	NA
MB_Group4_T1--1	chr3:137880801	C	NA	28	0	28	37.429	3.929	0	0	0	27	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:137880801	C	NA	21	0	21	35.762	6.024	0	0	0	18	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:137880801	C	NA	70	0	69	37.391	3.623	0	0	0	66	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:137880801	C	NA	20	0	20	37.600	3.485	0	0	0	19	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:137880801	C	NA	22	0	22	38.455	2.540	0	0	0	22	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:137880801	C	A	15	0.200	12	34.833	4.218	3	39.000	2.000	11	3	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:137880801	C	NA	84	0	84	36.917	4.209	0	0	0	79	0	DBR1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:145838729	T	NA	17	0	17	35.882	3.655	0	0	0	16	0	PLOD2	intronic	NA
MB_Group4_T1--2	chr3:145838729	T	C	16	0.062	14	37.500	2.279	1	35.000	0.000	14	1	PLOD2	intronic	NA
MB_Group4_T1--3	chr3:145838729	T	C	32	0.031	30	37.267	4.354	1	37.000	0.000	29	1	PLOD2	intronic	NA
MB_Group4_T1--4	chr3:145838729	T	NA	10	0	10	33.700	7.258	0	0	0	8	0	PLOD2	intronic	NA
MB_Group4_T1--5	chr3:145838729	T	C	46	0.239	35	36.229	3.979	11	36.455	2.252	33	11	PLOD2	intronic	NA
MB_Group4_T1--6	chr3:145838729	T	C	12	0.083	10	37.600	2.366	1	37.000	0.000	10	1	PLOD2	intronic	NA
MB_Group4_T1--GL	chr3:145838729	T	NA	40	0	40	37.300	3.314	0	0	0	39	0	PLOD2	intronic	NA
MB_Group4_T1--1	chr3:145838776	A	G	30	0.233	23	38.522	2.842	7	37.286	0.756	22	7	PLOD2	intronic	NA
MB_Group4_T1--2	chr3:145838776	A	G	27	0.296	19	37.842	2.035	8	36.250	1.753	19	8	PLOD2	intronic	NA
MB_Group4_T1--3	chr3:145838776	A	G	62	0.048	58	36.948	5.356	3	37.667	1.155	54	3	PLOD2	intronic	NA
MB_Group4_T1--4	chr3:145838776	A	G	20	0.150	17	37.588	4.109	3	36.333	1.155	16	3	PLOD2	intronic	NA
MB_Group4_T1--5	chr3:145838776	A	G	54	0.148	46	37.217	5.159	8	37.250	1.669	43	8	PLOD2	intronic	NA
MB_Group4_T1--6	chr3:145838776	A	G	20	0.250	15	37.800	2.783	5	36.600	0.894	15	5	PLOD2	intronic	NA
MB_Group4_T1--GL	chr3:145838776	A	NA	58	0	58	38.069	4.108	0	0	0	55	0	PLOD2	intronic	NA
MB_Group4_T1--1	chr3:148876318	G	T	17	0.118	15	40.600	0.910	2	37.000	0.000	15	2	HPS3	intronic	NA
MB_Group4_T1--2	chr3:148876318	G	T	17	0.235	13	39.308	2.287	4	35.000	0.000	13	4	HPS3	intronic	NA
MB_Group4_T1--3	chr3:148876318	G	T	38	0.026	37	37.649	5.250	1	35.000	0.000	35	1	HPS3	intronic	NA
MB_Group4_T1--4	chr3:148876318	G	NA	10	0	10	38.800	4.022	0	0	0	9	0	HPS3	intronic	NA
MB_Group4_T1--5	chr3:148876318	G	T	11	0.091	10	38.100	2.644	1	37.000	0.000	10	1	HPS3	intronic	NA
MB_Group4_T1--6	chr3:148876318	G	NA	10	0	10	38.600	2.951	0	0	0	10	0	HPS3	intronic	NA
MB_Group4_T1--GL	chr3:148876318	G	NA	37	0	37	38.892	2.503	0	0	0	37	0	HPS3	intronic	NA
MB_Group4_T1--1	chr3:150834222	C	NA	18	0	18	38.556	2.684	0	0	0	18	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:150834222	C	NA	15	0	15	38.000	2.330	0	0	0	15	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:150834222	C	NA	48	0	47	37.638	3.686	0	0	0	46	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:150834222	C	NA	12	0	12	37.750	3.137	0	0	0	12	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:150834222	C	NA	28	0	28	39.036	3.226	0	0	0	27	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:150834222	C	A	15	0.200	12	37.583	2.968	3	36.333	1.155	12	3	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:150834222	C	NA	49	0	49	38.061	3.262	0	0	0	48	0	MED12L	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:150931534	A	G	52	0.019	51	37.412	4.846	1	35.000	0.000	49	1	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:150931534	A	NA	31	0	31	37.484	2.815	0	0	0	31	0	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:150931534	A	G	73	0.274	52	37.808	3.036	20	38.200	2.913	51	20	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:150931534	A	NA	26	0	26	36.077	5.535	0	0	0	25	0	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:150931534	A	G	30	0.133	26	35.231	7.246	4	38.500	3.000	23	4	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:150931534	A	G	24	0.125	21	38.476	3.172	3	37.000	3.464	20	3	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:150931534	A	NA	127	0	127	37.118	4.143	0	0	0	121	0	P2RY14	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:155830156	T	C	13	0.385	8	37.250	3.655	5	36.000	2.646	8	5	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--2	chr3:155830156	T	NA	17	0	17	36.294	5.145	0	0	0	15	0	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--3	chr3:155830156	T	NA	48	0	47	37.553	5.360	0	0	0	44	0	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--4	chr3:155830156	T	NA	10	0	10	35.700	7.732	0	0	0	8	0	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--5	chr3:155830156	T	C	24	0.042	22	37.364	3.259	1	37.000	0.000	22	1	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--6	chr3:155830156	T	NA	13	0	13	39.538	1.984	0	0	0	13	0	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--GL	chr3:155830156	T	NA	50	0	50	37.560	4.077	0	0	0	46	0	GMPS(dist=174636),KCNAB1(dist=8181)	intergenic	NA
MB_Group4_T1--1	chr3:164785338	G	NA	19	0	19	39.053	2.321	0	0	0	19	0	SI	intronic	NA
MB_Group4_T1--2	chr3:164785338	G	NA	13	0	13	38.538	2.259	0	0	0	13	0	SI	intronic	NA
MB_Group4_T1--3	chr3:164785338	G	NA	37	0	37	39.108	2.436	0	0	0	37	0	SI	intronic	NA
MB_Group4_T1--4	chr3:164785338	G	NA	16	0	16	39.750	1.483	0	0	0	16	0	SI	intronic	NA
MB_Group4_T1--5	chr3:164785338	G	A	18	0.167	15	37.533	4.190	3	38.000	2.646	14	3	SI	intronic	NA
MB_Group4_T1--6	chr3:164785338	G	NA	10	0	10	39.400	1.430	0	0	0	10	0	SI	intronic	NA
MB_Group4_T1--GL	chr3:164785338	G	NA	44	0	44	38.591	4.277	0	0	0	42	0	SI	intronic	NA
MB_Group4_T1--1	chr3:16633822	A	G	16	0.562	7	36.143	5.551	9	36.222	1.787	6	9	DAZL	intronic	NA
MB_Group4_T1--2	chr3:16633822	A	G	18	0.167	15	37.933	2.576	3	37.000	0.000	15	3	DAZL	intronic	NA
MB_Group4_T1--3	chr3:16633822	A	G	47	0.128	41	37.634	3.433	6	32.167	8.159	39	5	DAZL	intronic	NA
MB_Group4_T1--4	chr3:16633822	A	G	10	0.100	9	37.778	3.193	1	37.000	0.000	9	1	DAZL	intronic	NA
MB_Group4_T1--5	chr3:16633822	A	G	28	0.250	20	36.400	3.560	7	36.714	0.756	20	7	DAZL	intronic	NA
MB_Group4_T1--6	chr3:16633822	A	G	13	0.077	12	37.750	3.279	1	37.000	0.000	12	1	DAZL	intronic	NA
MB_Group4_T1--GL	chr3:16633822	A	NA	54	0	53	36.811	4.740	0	0	0	49	0	DAZL	intronic	NA
MB_Group4_T1--1	chr3:182752032	A	T	10	0.100	9	35.222	3.667	1	35.000	0.000	8	1	MCCC1	intronic	NA
MB_Group4_T1--2	chr3:182752032	A	NA	19	0	19	35.000	8.781	0	0	0	17	0	MCCC1	intronic	NA
MB_Group4_T1--3	chr3:182752032	A	T	38	0.132	33	34.545	8.397	5	36.600	0.894	29	5	MCCC1	intronic	NA
MB_Group4_T1--4	chr3:182752032	A	NA	11	0	11	36.545	6.486	0	0	0	10	0	MCCC1	intronic	NA
MB_Group4_T1--5	chr3:182752032	A	T	41	0.171	34	35.824	4.421	7	36.714	0.756	33	7	MCCC1	intronic	NA
MB_Group4_T1--6	chr3:182752032	A	NA	10	0	10	36.600	2.914	0	0	0	10	0	MCCC1	intronic	NA
MB_Group4_T1--GL	chr3:182752032	A	NA	37	0	36	37.472	3.185	0	0	0	36	0	MCCC1	intronic	NA
MB_Group4_T1--1	chr3:182752034	C	T	10	0.100	9	34.778	9.667	1	37.000	0.000	8	1	MCCC1	intronic	NA
MB_Group4_T1--2	chr3:182752034	C	NA	19	0	19	36.947	4.390	0	0	0	17	0	MCCC1	intronic	NA
MB_Group4_T1--3	chr3:182752034	C	T	38	0.132	33	35.455	4.950	5	36.600	0.894	29	5	MCCC1	intronic	NA
MB_Group4_T1--4	chr3:182752034	C	NA	11	0	10	38.400	2.633	0	0	0	10	0	MCCC1	intronic	NA
MB_Group4_T1--5	chr3:182752034	C	T	42	0.167	34	35.971	4.130	7	36.714	0.756	31	7	MCCC1	intronic	NA
MB_Group4_T1--6	chr3:182752034	C	NA	10	0	10	37.700	2.214	0	0	0	10	0	MCCC1	intronic	NA
MB_Group4_T1--GL	chr3:182752034	C	NA	36	0	36	37.750	3.290	0	0	0	35	0	MCCC1	intronic	NA
MB_Group4_T1--1	chr3:182788887	C	G	80	0.275	58	38.879	2.541	22	38.591	3.514	57	22	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:182788887	C	NA	82	0	82	38.317	4.181	0	0	0	80	0	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:182788887	C	G	246	0.020	241	38.477	3.483	5	40.400	0.548	234	5	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:182788887	C	NA	65	0	64	38.391	2.567	0	0	0	64	0	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:182788887	C	NA	73	0	73	37.671	5.513	0	0	0	70	0	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:182788887	C	NA	38	0	38	37.395	5.702	0	0	0	36	0	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:182788887	C	NA	215	0	215	38.395	4.050	0	0	0	209	0	MCCC1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:183756051	C	A	14	0.214	11	37.545	3.588	3	38.000	3.606	11	3	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:183756051	C	NA	17	0	17	37.176	7.860	0	0	0	16	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:183756051	C	NA	106	0	106	36.821	4.028	0	0	0	100	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:183756051	C	NA	14	0	14	37.786	2.887	0	0	0	14	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:183756051	C	NA	50	0	50	37.760	3.946	0	0	0	49	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:183756051	C	NA	14	0	14	38.857	3.183	0	0	0	13	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:183756051	C	NA	76	0	76	36.987	3.978	0	0	0	73	0	HTR3D	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:183996379	C	A	21	0.190	17	36.765	4.116	4	37.000	1.633	16	4	ECE2	intronic	NA
MB_Group4_T1--2	chr3:183996379	C	NA	29	0	29	36.828	3.714	0	0	0	29	0	ECE2	intronic	NA
MB_Group4_T1--3	chr3:183996379	C	NA	120	0	120	35.992	4.252	0	0	0	114	0	ECE2	intronic	NA
MB_Group4_T1--4	chr3:183996379	C	NA	11	0	11	36.545	3.503	0	0	0	11	0	ECE2	intronic	NA
MB_Group4_T1--5	chr3:183996379	C	NA	54	0	54	36.148	5.388	0	0	0	51	0	ECE2	intronic	NA
MB_Group4_T1--6	chr3:183996379	C	NA	14	0	14	36.357	4.534	0	0	0	12	0	ECE2	intronic	NA
MB_Group4_T1--GL	chr3:183996379	C	NA	53	0	53	35.660	5.225	0	0	0	49	0	ECE2	intronic	NA
MB_Group4_T1--1	chr3:186271845	T	C	17	0.235	13	37.923	3.968	4	37.750	2.217	12	4	TBCCD1	intronic	NA
MB_Group4_T1--2	chr3:186271845	T	C	21	0.095	19	36.053	5.005	2	36.000	1.414	18	2	TBCCD1	intronic	NA
MB_Group4_T1--3	chr3:186271845	T	C	67	0.060	63	37.397	3.382	4	36.500	1.000	61	4	TBCCD1	intronic	NA
MB_Group4_T1--4	chr3:186271845	T	C	10	0.100	9	36.333	4.000	1	37.000	0.000	9	1	TBCCD1	intronic	NA
MB_Group4_T1--5	chr3:186271845	T	C	51	0.275	37	37.865	2.850	14	34.214	7.607	37	12	TBCCD1	intronic	NA
MB_Group4_T1--6	chr3:186271845	T	NA	14	0	14	37.214	2.517	0	0	0	14	0	TBCCD1	intronic	NA
MB_Group4_T1--GL	chr3:186271845	T	NA	38	0	38	36.526	4.045	0	0	0	34	0	TBCCD1	intronic	NA
MB_Group4_T1--1	chr3:194313621	T	C	16	0.250	12	35.750	2.563	4	37.750	0.957	12	4	TMEM44	intronic	NA
MB_Group4_T1--2	chr3:194313621	T	C	17	0.059	16	32.875	4.410	1	37.000	0.000	13	1	TMEM44	intronic	NA
MB_Group4_T1--3	chr3:194313621	T	C	75	0.013	74	32.459	6.279	1	38.000	0.000	59	1	TMEM44	intronic	NA
MB_Group4_T1--4	chr3:194313621	T	C	16	0.188	13	31.000	7.789	3	38.667	0.577	9	3	TMEM44	intronic	NA
MB_Group4_T1--5	chr3:194313621	T	C	44	0.045	42	34.571	3.983	2	39.500	2.121	38	2	TMEM44	intronic	NA
MB_Group4_T1--6	chr3:194313621	T	NA	12	0	11	34.000	2.324	0	0	0	11	0	TMEM44	intronic	NA
MB_Group4_T1--GL	chr3:194313621	T	NA	33	0	33	31.970	4.959	0	0	0	24	0	TMEM44	intronic	NA
MB_Group4_T1--1	chr3:195789305	A	G	25	0.080	23	38.696	2.401	2	35.000	2.828	23	2	TFRC	intronic	NA
MB_Group4_T1--2	chr3:195789305	A	NA	20	0	19	39.737	1.881	0	0	0	19	0	TFRC	intronic	NA
MB_Group4_T1--3	chr3:195789305	A	G	69	0.029	67	38.388	2.985	2	33.500	4.950	66	2	TFRC	intronic	NA
MB_Group4_T1--4	chr3:195789305	A	NA	15	0	15	35.533	6.243	0	0	0	13	0	TFRC	intronic	NA
MB_Group4_T1--5	chr3:195789305	A	G	41	0.268	30	38.233	3.370	11	35.909	1.640	29	11	TFRC	intronic	NA
MB_Group4_T1--6	chr3:195789305	A	NA	12	0	12	37.500	4.317	0	0	0	11	0	TFRC	intronic	NA
MB_Group4_T1--GL	chr3:195789305	A	NA	44	0	44	38.045	3.327	0	0	0	44	0	TFRC	intronic	NA
MB_Group4_T1--1	chr3:195789309	C	T	24	0.042	23	37.261	3.768	1	37.000	0.000	22	1	TFRC	intronic	NA
MB_Group4_T1--2	chr3:195789309	C	NA	20	0	19	39.263	2.806	0	0	0	19	0	TFRC	intronic	NA
MB_Group4_T1--3	chr3:195789309	C	T	72	0.014	71	37.690	5.195	1	37.000	0.000	67	1	TFRC	intronic	NA
MB_Group4_T1--4	chr3:195789309	C	NA	14	0	14	37.857	3.035	0	0	0	14	0	TFRC	intronic	NA
MB_Group4_T1--5	chr3:195789309	C	T	43	0.256	32	38.531	2.627	11	34.727	2.867	32	11	TFRC	intronic	NA
MB_Group4_T1--6	chr3:195789309	C	NA	12	0	12	38.000	2.763	0	0	0	12	0	TFRC	intronic	NA
MB_Group4_T1--GL	chr3:195789309	C	NA	44	0	44	37.614	3.841	0	0	0	41	0	TFRC	intronic	NA
MB_Group4_T1--1	chr3:3196362	C	NA	19	0	19	37.368	6.193	0	0	0	17	0	CRBN	intronic	NA
MB_Group4_T1--2	chr3:3196362	C	NA	22	0	22	39.682	1.644	0	0	0	22	0	CRBN	intronic	NA
MB_Group4_T1--3	chr3:3196362	C	A	50	0.020	49	39.816	1.629	1	33.000	0.000	49	1	CRBN	intronic	NA
MB_Group4_T1--4	chr3:3196362	C	NA	30	0	30	38.067	4.540	0	0	0	29	0	CRBN	intronic	NA
MB_Group4_T1--5	chr3:3196362	C	NA	12	0	12	35.750	8.069	0	0	0	11	0	CRBN	intronic	NA
MB_Group4_T1--6	chr3:3196362	C	A	17	0.176	14	39.786	1.424	3	38.333	2.309	14	3	CRBN	intronic	NA
MB_Group4_T1--GL	chr3:3196362	C	NA	63	0	63	37.841	3.655	0	0	0	59	0	CRBN	intronic	NA
MB_Group4_T1--1	chr3:36880201	C	NA	25	0	25	38.400	3.416	0	0	0	25	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:36880201	C	NA	16	0	16	38.688	3.092	0	0	0	16	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:36880201	C	NA	62	0	62	38.016	3.731	0	0	0	59	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:36880201	C	NA	21	0	21	37.190	3.723	0	0	0	20	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:36880201	C	NA	24	0	24	36.792	6.467	0	0	0	23	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:36880201	C	A	21	0.143	18	37.167	5.501	3	40.667	0.577	17	3	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:36880201	C	NA	73	0	73	38.329	3.760	0	0	0	71	0	TRANK1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:46477648	T	NA	19	0	19	36.368	2.629	0	0	0	19	0	LTF	UTR3	NA
MB_Group4_T1--2	chr3:46477648	T	NA	16	0	16	36.875	4.759	0	0	0	15	0	LTF	UTR3	NA
MB_Group4_T1--3	chr3:46477648	T	NA	76	0	76	36.000	4.192	0	0	0	71	0	LTF	UTR3	NA
MB_Group4_T1--4	chr3:46477648	T	NA	11	0	11	34.455	3.778	0	0	0	10	0	LTF	UTR3	NA
MB_Group4_T1--5	chr3:46477648	T	NA	22	0	22	34.818	3.911	0	0	0	20	0	LTF	UTR3	NA
MB_Group4_T1--6	chr3:46477648	T	C	15	0.200	12	38.250	2.633	3	38.000	3.000	12	3	LTF	UTR3	NA
MB_Group4_T1--GL	chr3:46477648	T	NA	65	0	64	35.859	3.141	0	0	0	62	0	LTF	UTR3	NA
MB_Group4_T1--1	chr3:47469135	C	NA	23	0	23	37.826	3.243	0	0	0	23	0	SCAP	exonic	stopgain_SNV
MB_Group4_T1--2	chr3:47469135	C	NA	31	0	31	37.000	5.385	0	0	0	30	0	SCAP	exonic	stopgain_SNV
MB_Group4_T1--3	chr3:47469135	C	A	123	0.008	122	37.713	3.947	1	31.000	0.000	118	1	SCAP	exonic	stopgain_SNV
MB_Group4_T1--4	chr3:47469135	C	NA	14	0	14	37.429	6.665	0	0	0	13	0	SCAP	exonic	stopgain_SNV
MB_Group4_T1--5	chr3:47469135	C	A	46	0.174	38	36.763	3.324	8	34.750	2.605	38	8	SCAP	exonic	stopgain_SNV
MB_Group4_T1--6	chr3:47469135	C	NA	12	0	12	36.833	3.353	0	0	0	12	0	SCAP	exonic	stopgain_SNV
MB_Group4_T1--GL	chr3:47469135	C	NA	66	0	66	37.091	4.346	0	0	0	62	0	SCAP	exonic	stopgain_SNV
MB_Group4_T1--1	chr3:48629354	C	NA	139	0	139	36.252	4.013	0	0	0	130	0	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:48629354	C	T	71	0.155	60	36.800	3.424	11	36.818	3.281	59	11	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:48629354	C	T	833	0.011	824	36.015	4.685	9	35.889	7.079	769	8	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:48629354	C	NA	57	0	56	35.946	4.811	0	0	0	54	0	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:48629354	C	NA	691	0	691	35.734	4.958	0	0	0	641	0	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:48629354	C	NA	71	0	71	35.873	5.624	0	0	0	65	0	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:48629354	C	NA	264	0	264	36.148	4.481	0	0	0	249	0	COL7A1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:48667855	C	NA	21	0	21	36.333	3.440	0	0	0	20	0	SLC26A6	intronic	NA
MB_Group4_T1--2	chr3:48667855	C	NA	12	0	12	37.500	3.289	0	0	0	12	0	SLC26A6	intronic	NA
MB_Group4_T1--3	chr3:48667855	C	NA	107	0	107	37.140	3.949	0	0	0	104	0	SLC26A6	intronic	NA
MB_Group4_T1--4	chr3:48667855	C	NA	13	0	13	33.923	9.394	0	0	0	11	0	SLC26A6	intronic	NA
MB_Group4_T1--5	chr3:48667855	C	NA	82	0	82	37.415	3.464	0	0	0	81	0	SLC26A6	intronic	NA
MB_Group4_T1--6	chr3:48667855	C	A	16	0.188	13	38.923	3.303	3	36.667	2.887	13	3	SLC26A6	intronic	NA
MB_Group4_T1--GL	chr3:48667855	C	NA	43	0	43	37.860	3.392	0	0	0	43	0	SLC26A6	intronic	NA
MB_Group4_T1--1	chr3:49723739	A	C	32	0.281	22	28.864	6.105	9	21.444	11.114	11	3	MST1	intronic	NA
MB_Group4_T1--2	chr3:49723739	A	C	31	0.387	18	27.944	7.376	12	30.583	5.384	8	8	MST1	intronic	NA
MB_Group4_T1--3	chr3:49723739	A	C	174	0.494	86	29.279	7.695	86	30.919	5.686	50	63	MST1	intronic	NA
MB_Group4_T1--4	chr3:49723739	A	C	10	0.600	4	27.750	6.850	6	32.000	2.098	2	5	MST1	intronic	NA
MB_Group4_T1--5	chr3:49723739	A	C	149	0.443	77	28.831	7.918	66	28.970	6.500	41	40	MST1	intronic	NA
MB_Group4_T1--6	chr3:49723739	A	C	16	0.438	8	27.500	6.392	7	23.714	13.099	3	4	MST1	intronic	NA
MB_Group4_T1--GL	chr3:49723739	A	C	46	0.022	44	28.614	6.889	1	24.000	0.000	21	0	MST1	intronic	NA
MB_Group4_T1--1	chr3:52536005	A	T	50	0.320	34	33.118	4.928	16	34.062	1.914	30	15	STAB1	intronic	NA
MB_Group4_T1--2	chr3:52536005	A	T	33	0.394	20	34.350	4.428	13	34.154	2.340	15	13	STAB1	intronic	NA
MB_Group4_T1--3	chr3:52536005	A	T	193	0.041	185	34.849	4.894	8	31.250	8.876	168	7	STAB1	intronic	NA
MB_Group4_T1--4	chr3:52536005	A	T	24	0.292	17	34.176	7.222	7	32.000	1.826	16	7	STAB1	intronic	NA
MB_Group4_T1--5	chr3:52536005	A	T	219	0.160	184	34.777	5.133	35	33.914	2.811	170	34	STAB1	intronic	NA
MB_Group4_T1--6	chr3:52536005	A	T	22	0.136	19	34.421	5.326	3	30.000	1.732	16	2	STAB1	intronic	NA
MB_Group4_T1--GL	chr3:52536005	A	NA	51	0	51	35.392	4.005	0	0	0	46	0	STAB1	intronic	NA
MB_Group4_T1--1	chr3:52536008	G	T	51	0.294	36	35.500	5.464	15	36.733	0.704	34	15	STAB1	intronic	NA
MB_Group4_T1--2	chr3:52536008	G	T	34	0.412	20	35.400	6.636	14	36.000	2.000	19	14	STAB1	intronic	NA
MB_Group4_T1--3	chr3:52536008	G	T	207	0.039	199	36.035	4.667	8	34.500	7.309	189	7	STAB1	intronic	NA
MB_Group4_T1--4	chr3:52536008	G	T	25	0.240	19	37.211	2.616	6	36.667	0.816	19	6	STAB1	intronic	NA
MB_Group4_T1--5	chr3:52536008	G	T	231	0.160	194	36.036	4.346	37	35.351	5.034	181	35	STAB1	intronic	NA
MB_Group4_T1--6	chr3:52536008	G	T	22	0.136	19	36.053	4.327	3	34.000	3.606	17	3	STAB1	intronic	NA
MB_Group4_T1--GL	chr3:52536008	G	NA	61	0	61	36.557	3.594	0	0	0	60	0	STAB1	intronic	NA
MB_Group4_T1--1	chr3:52676066	A	NA	41	0	32	34.938	3.172	0	0	0	29	0	PBRM1	intronic	NA
MB_Group4_T1--2	chr3:52676066	A	T	12	0.333	7	36.571	1.618	4	28.750	4.787	7	2	PBRM1	intronic	NA
MB_Group4_T1--3	chr3:52676066	A	T	64	0.047	51	35.196	4.322	3	28.333	4.726	48	2	PBRM1	intronic	NA
MB_Group4_T1--4	chr3:52676066	A	T	16	0.062	14	32.786	6.315	1	32.000	0.000	13	1	PBRM1	intronic	NA
MB_Group4_T1--5	chr3:52676066	A	NA	29	0	20	35.150	4.158	0	0	0	19	0	PBRM1	intronic	NA
MB_Group4_T1--6	chr3:52676066	A	NA	12	0	8	34.500	2.828	0	0	0	8	0	PBRM1	intronic	NA
MB_Group4_T1--GL	chr3:52676066	A	NA	60	0	45	36.111	3.393	0	0	0	44	0	PBRM1	intronic	NA
MB_Group4_T1--1	chr3:52837997	G	NA	16	0	16	34.812	2.344	0	0	0	16	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr3:52837997	G	C	19	0.316	13	36.308	3.225	6	35.667	2.160	13	6	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr3:52837997	G	NA	139	0	139	35.489	3.545	0	0	0	133	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr3:52837997	G	NA	18	0	18	35.056	2.796	0	0	0	18	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr3:52837997	G	NA	94	0	94	35.330	4.388	0	0	0	89	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr3:52837997	G	NA	17	0	17	36.412	3.001	0	0	0	17	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr3:52837997	G	NA	67	0	67	35.284	4.037	0	0	0	59	0	ITIH3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr3:53217491	C	NA	17	0	17	36.353	2.893	0	0	0	17	0	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--2	chr3:53217491	C	A	14	0.214	11	35.364	3.384	3	37.000	2.646	11	3	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--3	chr3:53217491	C	NA	84	0	84	35.893	5.169	0	0	0	78	0	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--4	chr3:53217491	C	NA	11	0	11	30.636	8.441	0	0	0	8	0	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--5	chr3:53217491	C	A	64	0.016	63	35.540	3.809	1	35.000	0.000	61	1	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--6	chr3:53217491	C	NA	13	0	13	36.692	5.023	0	0	0	12	0	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--GL	chr3:53217491	C	NA	53	0	53	35.566	3.337	0	0	0	51	0	PRKCD	exonic	synonymous_SNV
MB_Group4_T1--1	chr4:100472060	C	G	40	0.225	31	37.419	2.630	9	38.556	2.455	31	9	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:100472060	C	NA	43	0	43	37.744	3.332	0	0	0	42	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:100472060	C	NA	80	0	80	36.850	4.933	0	0	0	77	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:100472060	C	NA	37	0	37	38.162	2.901	0	0	0	36	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:100472060	C	NA	21	0	21	37.238	2.300	0	0	0	21	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:100472060	C	NA	23	0	23	36.652	6.020	0	0	0	22	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:100472060	C	NA	119	0	119	37.697	3.743	0	0	0	115	0	TRMT10A	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:103585774	C	T	48	0.188	38	37.605	4.390	9	34.444	2.506	37	8	MANBA	intronic	NA
MB_Group4_T1--2	chr4:103585774	C	T	26	0.154	22	37.500	3.839	4	33.250	3.862	21	3	MANBA	intronic	NA
MB_Group4_T1--3	chr4:103585774	C	T	91	0.011	90	36.678	4.030	1	33.000	0.000	87	1	MANBA	intronic	NA
MB_Group4_T1--4	chr4:103585774	C	NA	26	0	25	35.680	5.383	0	0	0	24	0	MANBA	intronic	NA
MB_Group4_T1--5	chr4:103585774	C	T	84	0.024	82	37.963	3.241	2	36.500	2.121	80	2	MANBA	intronic	NA
MB_Group4_T1--6	chr4:103585774	C	T	21	0.048	20	33.350	8.911	1	37.000	0.000	16	1	MANBA	intronic	NA
MB_Group4_T1--GL	chr4:103585774	C	NA	76	0	76	37.000	4.202	0	0	0	72	0	MANBA	intronic	NA
MB_Group4_T1--1	chr4:106448161	G	NA	25	0	25	35.720	3.577	0	0	0	24	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--2	chr4:106448161	G	NA	19	0	19	36.947	3.851	0	0	0	18	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--3	chr4:106448161	G	NA	66	0	66	35.273	4.809	0	0	0	60	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--4	chr4:106448161	G	T	16	0.188	13	36.923	3.926	3	36.667	3.786	12	3	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--5	chr4:106448161	G	NA	39	0	39	36.256	3.647	0	0	0	37	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--6	chr4:106448161	G	NA	11	0	11	35.182	3.920	0	0	0	10	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--GL	chr4:106448161	G	NA	47	0	47	36.660	3.534	0	0	0	45	0	PPA2(dist=52934),ARHGEF38(dist=25616)	intergenic	NA
MB_Group4_T1--1	chr4:117519579	G	NA	29	0	29	35.379	4.030	0	0	0	27	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--2	chr4:117519579	G	NA	23	0	23	36.609	3.665	0	0	0	21	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--3	chr4:117519579	G	NA	135	0	135	35.830	4.416	0	0	0	124	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--4	chr4:117519579	G	T	19	0.158	16	34.688	4.270	3	38.667	3.215	14	3	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--5	chr4:117519579	G	NA	90	0	90	34.589	5.440	0	0	0	79	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--6	chr4:117519579	G	NA	12	0	12	32.333	9.884	0	0	0	10	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--GL	chr4:117519579	G	NA	56	0	56	34.518	5.768	0	0	0	50	0	MIR1973(dist=298655),TRAM1L1(dist=485131)	intergenic	NA
MB_Group4_T1--1	chr4:152200991	G	A	22	0.182	18	36.833	7.641	4	35.000	3.651	17	4	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--2	chr4:152200991	G	A	31	0.226	23	38.304	2.584	7	37.000	1.633	23	7	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--3	chr4:152200991	G	A	56	0.179	46	37.457	3.075	10	36.800	1.476	45	10	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--4	chr4:152200991	G	A	22	0.227	17	36.941	7.301	5	36.400	1.342	16	5	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--5	chr4:152200991	G	A	70	0.371	44	37.909	3.102	26	36.308	3.017	44	25	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--6	chr4:152200991	G	A	12	0.167	10	39.200	1.932	2	36.500	2.121	10	2	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--GL	chr4:152200991	G	NA	49	0	49	37.163	4.215	0	0	0	47	0	PRSS48	exonic	synonymous_SNV
MB_Group4_T1--1	chr4:164466783	C	NA	11	0	11	35.091	4.763	0	0	0	10	0	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:164466783	C	A	12	0.250	9	36.556	3.877	3	37.667	1.528	9	3	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:164466783	C	A	20	0.050	19	35.632	3.235	1	37.000	0.000	18	1	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:164466783	C	NA	13	0	13	37.000	2.915	0	0	0	13	0	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:164466783	C	NA	10	0	10	35.000	3.742	0	0	0	9	0	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:164466783	C	NA	12	0	12	36.583	2.503	0	0	0	12	0	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:164466783	C	NA	34	0	34	36.853	3.332	0	0	0	33	0	MARCH1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:184585269	A	G	20	0.050	1	39.000	0.000	1	37.000	0.000	1	1	TRAPPC11	intronic	NA
MB_Group4_T1--2	chr4:184585269	A	NA	19	0	4	35.750	2.754	0	0	0	4	0	TRAPPC11	intronic	NA
MB_Group4_T1--3	chr4:184585269	A	G	82	0.354	2	37.500	2.121	29	35.897	3.967	2	28	TRAPPC11	intronic	NA
MB_Group4_T1--4	chr4:184585269	A	NA	24	0	15	37.733	2.282	0	0	0	15	0	TRAPPC11	intronic	NA
MB_Group4_T1--5	chr4:184585269	A	NA	31	0	3	35.000	4.000	0	0	0	3	0	TRAPPC11	intronic	NA
MB_Group4_T1--6	chr4:184585269	A	NA	13	0	5	35.800	1.304	0	0	0	5	0	TRAPPC11	intronic	NA
MB_Group4_T1--GL	chr4:184585269	A	NA	72	0	41	35.976	3.725	0	0	0	39	0	TRAPPC11	intronic	NA
MB_Group4_T1--1	chr4:186361689	C	A	18	0.167	15	37.800	3.629	3	40.000	1.732	14	3	C4orf47	intronic	NA
MB_Group4_T1--2	chr4:186361689	C	NA	14	0	14	38.929	3.792	0	0	0	13	0	C4orf47	intronic	NA
MB_Group4_T1--3	chr4:186361689	C	NA	45	0	45	38.556	2.062	0	0	0	45	0	C4orf47	intronic	NA
MB_Group4_T1--4	chr4:186361689	C	NA	25	0	25	38.720	2.638	0	0	0	24	0	C4orf47	intronic	NA
MB_Group4_T1--5	chr4:186361689	C	NA	23	0	23	38.652	3.472	0	0	0	22	0	C4orf47	intronic	NA
MB_Group4_T1--6	chr4:186361689	C	NA	29	0	29	36.793	5.772	0	0	0	28	0	C4orf47	intronic	NA
MB_Group4_T1--GL	chr4:186361689	C	NA	74	0	73	38.068	3.813	0	0	0	70	0	C4orf47	intronic	NA
MB_Group4_T1--1	chr4:187158305	T	C	22	0.091	20	36.500	4.323	2	33.500	0.707	18	2	KLKB1	intronic	NA
MB_Group4_T1--2	chr4:187158305	T	C	21	0.048	20	37.350	2.720	1	34.000	0.000	20	1	KLKB1	intronic	NA
MB_Group4_T1--3	chr4:187158305	T	C	60	0.100	54	35.333	5.818	6	33.000	1.549	51	6	KLKB1	intronic	NA
MB_Group4_T1--4	chr4:187158305	T	C	29	0.034	28	35.500	5.534	1	34.000	0.000	25	1	KLKB1	intronic	NA
MB_Group4_T1--5	chr4:187158305	T	C	58	0.172	48	35.667	4.633	10	33.800	1.932	45	10	KLKB1	intronic	NA
MB_Group4_T1--6	chr4:187158305	T	C	16	0.125	14	37.929	3.518	2	34.000	0.000	14	2	KLKB1	intronic	NA
MB_Group4_T1--GL	chr4:187158305	T	NA	43	0	43	34.140	5.185	0	0	0	40	0	KLKB1	intronic	NA
MB_Group4_T1--1	chr4:38799981	G	T	24	0.333	16	38.500	2.530	8	37.125	4.051	16	7	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:38799981	G	NA	26	0	26	37.654	3.857	0	0	0	25	0	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:38799981	G	T	66	0.076	61	35.393	5.302	5	40.000	1.732	56	5	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:38799981	G	NA	22	0	22	36.864	3.796	0	0	0	22	0	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:38799981	G	NA	21	0	21	37.381	3.840	0	0	0	20	0	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:38799981	G	NA	17	0	17	39.059	1.749	0	0	0	17	0	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:38799981	G	NA	60	0	60	38.283	3.195	0	0	0	58	0	TLR1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:48091773	T	NA	29	0	29	38.138	3.815	0	0	0	28	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:48091773	T	NA	20	0	20	36.950	3.967	0	0	0	19	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:48091773	T	NA	50	0	50	37.300	4.032	0	0	0	48	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:48091773	T	C	27	0.148	23	37.348	3.069	4	36.000	3.464	23	4	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:48091773	T	NA	12	0	12	36.000	3.814	0	0	0	11	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:48091773	T	NA	13	0	13	37.923	2.783	0	0	0	13	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:48091773	T	NA	84	0	84	37.095	3.288	0	0	0	82	0	TXK	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:69885923	T	G	47	0.043	45	36.267	4.361	2	37.000	0.000	41	2	UGT2B10	exonic	unknown
MB_Group4_T1--2	chr4:69885923	T	G	65	0.092	59	36.102	4.711	6	36.000	1.095	56	6	UGT2B10	exonic	unknown
MB_Group4_T1--3	chr4:69885923	T	G	124	0.048	118	36.169	4.835	6	37.000	2.191	110	6	UGT2B10	exonic	unknown
MB_Group4_T1--4	chr4:69885923	T	G	57	0.053	54	36.907	2.973	3	37.000	0.000	53	3	UGT2B10	exonic	unknown
MB_Group4_T1--5	chr4:69885923	T	G	42	0.167	35	36.686	5.144	7	36.429	0.976	33	7	UGT2B10	exonic	unknown
MB_Group4_T1--6	chr4:69885923	T	G	37	0.054	35	36.600	2.933	2	37.000	0.000	35	2	UGT2B10	exonic	unknown
MB_Group4_T1--GL	chr4:69885923	T	NA	203	0	203	36.039	4.169	0	0	0	189	0	UGT2B10	exonic	unknown
MB_Group4_T1--1	chr4:74486175	C	NA	20	0	20	32.450	8.325	0	0	0	16	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:74486175	C	NA	25	0	25	32.040	5.697	0	0	0	18	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:74486175	C	NA	90	0	90	33.011	5.078	0	0	0	77	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:74486175	C	A	23	0.174	19	30.684	9.184	4	34.000	3.464	15	4	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:74486175	C	NA	74	0	74	33.270	5.691	0	0	0	64	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:74486175	C	NA	20	0	20	32.800	4.060	0	0	0	16	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:74486175	C	NA	46	0	46	35.000	2.633	0	0	0	45	0	RASSF6	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:76841864	C	NA	26	0	26	37.538	3.373	0	0	0	26	0	NAAA	intronic	NA
MB_Group4_T1--2	chr4:76841864	C	A	36	0.028	35	36.600	4.710	1	41.000	0.000	31	1	NAAA	intronic	NA
MB_Group4_T1--3	chr4:76841864	C	NA	114	0	113	36.929	4.728	0	0	0	108	0	NAAA	intronic	NA
MB_Group4_T1--4	chr4:76841864	C	NA	19	0	19	37.421	7.411	0	0	0	18	0	NAAA	intronic	NA
MB_Group4_T1--5	chr4:76841864	C	NA	53	0	53	36.623	3.829	0	0	0	51	0	NAAA	intronic	NA
MB_Group4_T1--6	chr4:76841864	C	A	16	0.188	13	36.769	3.370	3	39.000	3.464	13	3	NAAA	intronic	NA
MB_Group4_T1--GL	chr4:76841864	C	NA	103	0	103	37.272	4.027	0	0	0	100	0	NAAA	intronic	NA
MB_Group4_T1--1	chr4:88532216	C	NA	12	0	11	38.364	3.880	0	0	0	11	0	DSPP	intronic	NA
MB_Group4_T1--2	chr4:88532216	C	T	20	0.250	15	38.267	3.035	5	34.600	1.342	15	5	DSPP	intronic	NA
MB_Group4_T1--3	chr4:88532216	C	NA	74	0	73	38.425	4.729	0	0	0	71	0	DSPP	intronic	NA
MB_Group4_T1--4	chr4:88532216	C	T	17	0.059	14	35.214	6.682	1	37.000	0.000	11	1	DSPP	intronic	NA
MB_Group4_T1--5	chr4:88532216	C	NA	20	0	19	38.632	2.671	0	0	0	19	0	DSPP	intronic	NA
MB_Group4_T1--6	chr4:88532216	C	NA	17	0	17	38.706	3.387	0	0	0	16	0	DSPP	intronic	NA
MB_Group4_T1--GL	chr4:88532216	C	NA	70	0	69	38.377	3.374	0	0	0	67	0	DSPP	intronic	NA
MB_Group4_T1--1	chr4:89669102	A	G	18	0.167	15	36.133	3.461	3	37.333	2.517	14	3	FAM13A	intronic	NA
MB_Group4_T1--2	chr4:89669102	A	G	21	0.143	18	34.111	3.969	3	37.000	0.000	16	3	FAM13A	intronic	NA
MB_Group4_T1--3	chr4:89669102	A	G	44	0.068	41	34.390	5.634	3	36.333	1.155	35	3	FAM13A	intronic	NA
MB_Group4_T1--4	chr4:89669102	A	G	15	0.067	14	32.643	3.855	1	37.000	0.000	11	1	FAM13A	intronic	NA
MB_Group4_T1--5	chr4:89669102	A	G	38	0.289	27	34.037	4.743	11	34.727	5.968	22	10	FAM13A	intronic	NA
MB_Group4_T1--6	chr4:89669102	A	NA	15	0	15	33.733	3.150	0	0	0	14	0	FAM13A	intronic	NA
MB_Group4_T1--GL	chr4:89669102	A	NA	45	0	45	33.333	6.168	0	0	0	37	0	FAM13A	intronic	NA
MB_Group4_T1--1	chr4:95202923	A	G	18	0.056	17	34.176	6.521	1	37.000	0.000	15	1	SMARCAD1	intronic	NA
MB_Group4_T1--2	chr4:95202923	A	G	15	0.267	11	35.545	3.078	4	32.750	10.532	10	3	SMARCAD1	intronic	NA
MB_Group4_T1--3	chr4:95202923	A	G	77	0.039	74	34.541	6.098	3	37.333	0.577	64	3	SMARCAD1	intronic	NA
MB_Group4_T1--4	chr4:95202923	A	NA	13	0	13	35.308	3.038	0	0	0	13	0	SMARCAD1	intronic	NA
MB_Group4_T1--5	chr4:95202923	A	G	55	0.073	51	35.275	4.916	4	36.500	1.000	47	4	SMARCAD1	intronic	NA
MB_Group4_T1--6	chr4:95202923	A	G	15	0.200	12	35.833	4.174	3	38.000	1.000	11	3	SMARCAD1	intronic	NA
MB_Group4_T1--GL	chr4:95202923	A	NA	51	0	50	35.120	4.188	0	0	0	44	0	SMARCAD1	intronic	NA
MB_Group4_T1--1	chr4:96761326	G	T	22	0.227	17	37.235	4.521	5	36.600	2.881	16	5	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr4:96761326	G	NA	24	0	24	37.750	2.982	0	0	0	24	0	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr4:96761326	G	T	126	0.032	122	37.885	3.621	4	39.250	2.217	118	4	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr4:96761326	G	NA	20	0	20	36.350	6.209	0	0	0	18	0	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr4:96761326	G	NA	97	0	97	37.722	3.387	0	0	0	95	0	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr4:96761326	G	NA	16	0	16	37.375	5.097	0	0	0	14	0	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr4:96761326	G	NA	43	0	43	37.302	3.852	0	0	0	42	0	PDHA2	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr4:9743906	A	C	19	0.421	11	35.182	4.191	8	36.625	2.200	9	8	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--2	chr4:9743906	A	C	14	0.429	8	36.875	2.232	6	36.500	1.761	8	6	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--3	chr4:9743906	A	C	56	0.446	30	34.700	7.576	25	37.280	2.509	25	25	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--4	chr4:9743906	A	NA	25	0	25	36.440	2.663	0	0	0	25	0	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--5	chr4:9743906	A	C	14	0.357	9	37.222	3.734	5	36.000	3.317	9	5	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--6	chr4:9743906	A	C	14	0.143	12	39.167	1.899	2	40.000	0.000	12	2	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--GL	chr4:9743906	A	NA	63	0	63	36.667	5.454	0	0	0	56	0	MIR548I2(dist=185969),DRD5(dist=39352)	intergenic	NA
MB_Group4_T1--1	chr5:1201813	G	A	69	0.116	61	32.754	6.584	8	35.375	1.685	48	8	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--2	chr5:1201813	G	A	73	0.151	62	33.726	4.177	11	37.455	1.368	54	11	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--3	chr5:1201813	G	A	313	0.016	308	32.890	6.191	5	36.200	1.304	253	5	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--4	chr5:1201813	G	A	41	0.049	39	33.462	6.743	2	39.000	2.828	34	2	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--5	chr5:1201813	G	A	261	0.042	250	33.552	5.722	11	36.636	1.912	215	11	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--6	chr5:1201813	G	A	37	0.135	32	33.625	4.449	5	36.200	1.095	28	5	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--GL	chr5:1201813	G	NA	123	0	123	32.049	6.824	0	0	0	100	0	SLC6A19	exonic	synonymous_SNV
MB_Group4_T1--1	chr5:127625073	T	C	26	0.115	23	36.957	2.771	3	36.667	1.528	22	3	FBN2	intronic	NA
MB_Group4_T1--2	chr5:127625073	T	C	15	0.067	14	38.143	2.316	1	37.000	0.000	14	1	FBN2	intronic	NA
MB_Group4_T1--3	chr5:127625073	T	NA	69	0	68	36.118	3.930	0	0	0	65	0	FBN2	intronic	NA
MB_Group4_T1--4	chr5:127625073	T	NA	14	0	14	36.429	6.073	0	0	0	13	0	FBN2	intronic	NA
MB_Group4_T1--5	chr5:127625073	T	C	58	0.190	46	37.304	2.756	11	35.727	2.760	45	10	FBN2	intronic	NA
MB_Group4_T1--6	chr5:127625073	T	NA	13	0	13	37.154	2.794	0	0	0	13	0	FBN2	intronic	NA
MB_Group4_T1--GL	chr5:127625073	T	NA	65	0	65	36.677	3.670	0	0	0	63	0	FBN2	intronic	NA
MB_Group4_T1--1	chr5:138654846	C	T	30	0.067	28	38.000	2.108	2	35.500	2.121	28	2	MATR3	intronic	NA
MB_Group4_T1--2	chr5:138654846	C	T	25	0.200	20	38.000	3.026	5	37.000	2.828	20	5	MATR3	intronic	NA
MB_Group4_T1--3	chr5:138654846	C	T	98	0.010	97	37.598	3.976	1	37.000	0.000	92	1	MATR3	intronic	NA
MB_Group4_T1--4	chr5:138654846	C	NA	13	0	13	38.692	2.983	0	0	0	13	0	MATR3	intronic	NA
MB_Group4_T1--5	chr5:138654846	C	T	62	0.097	56	37.589	3.687	6	36.000	3.286	55	6	MATR3	intronic	NA
MB_Group4_T1--6	chr5:138654846	C	NA	19	0	19	36.895	5.216	0	0	0	17	0	MATR3	intronic	NA
MB_Group4_T1--GL	chr5:138654846	C	NA	82	0	82	38.085	3.742	0	0	0	79	0	MATR3	intronic	NA
MB_Group4_T1--1	chr5:138660830	C	NA	10	0	9	36.222	5.118	0	0	0	8	0	MATR3	intronic	NA
MB_Group4_T1--2	chr5:138660830	C	NA	15	0	15	37.267	3.693	0	0	0	15	0	MATR3	intronic	NA
MB_Group4_T1--3	chr5:138660830	C	T	41	0.024	40	36.925	3.206	1	39.000	0.000	40	1	MATR3	intronic	NA
MB_Group4_T1--4	chr5:138660830	C	NA	15	0	15	35.800	4.945	0	0	0	13	0	MATR3	intronic	NA
MB_Group4_T1--5	chr5:138660830	C	T	43	0.233	33	36.061	4.264	10	37.500	2.369	30	10	MATR3	intronic	NA
MB_Group4_T1--6	chr5:138660830	C	NA	12	0	12	36.500	2.541	0	0	0	12	0	MATR3	intronic	NA
MB_Group4_T1--GL	chr5:138660830	C	NA	33	0	33	35.939	3.473	0	0	0	30	0	MATR3	intronic	NA
MB_Group4_T1--1	chr5:138713080	C	NA	29	0	29	35.379	4.799	0	0	0	27	0	SLC23A1	intronic	NA
MB_Group4_T1--2	chr5:138713080	C	NA	13	0	13	38.077	3.174	0	0	0	13	0	SLC23A1	intronic	NA
MB_Group4_T1--3	chr5:138713080	C	NA	128	0	128	36.055	5.050	0	0	0	119	0	SLC23A1	intronic	NA
MB_Group4_T1--4	chr5:138713080	C	NA	11	0	11	33.455	9.522	0	0	0	9	0	SLC23A1	intronic	NA
MB_Group4_T1--5	chr5:138713080	C	NA	54	0	54	35.574	3.699	0	0	0	51	0	SLC23A1	intronic	NA
MB_Group4_T1--6	chr5:138713080	C	A	16	0.188	13	37.154	2.340	3	37.000	2.000	13	3	SLC23A1	intronic	NA
MB_Group4_T1--GL	chr5:138713080	C	NA	54	0	54	37.167	3.511	0	0	0	53	0	SLC23A1	intronic	NA
MB_Group4_T1--1	chr5:149474016	A	G	29	0.379	18	38.167	3.092	11	36.091	4.437	18	10	CSF1R	intronic	NA
MB_Group4_T1--2	chr5:149474016	A	G	22	0.364	14	37.357	3.795	8	37.875	2.748	14	8	CSF1R	intronic	NA
MB_Group4_T1--3	chr5:149474016	A	G	83	0.458	44	37.045	3.368	38	38.342	2.507	42	38	CSF1R	intronic	NA
MB_Group4_T1--4	chr5:149474016	A	NA	24	0	23	37.348	2.479	0	0	0	23	0	CSF1R	intronic	NA
MB_Group4_T1--5	chr5:149474016	A	G	23	0.565	10	37.700	3.368	13	34.615	8.481	10	11	CSF1R	intronic	NA
MB_Group4_T1--6	chr5:149474016	A	G	19	0.263	14	38.786	3.118	5	32.000	6.633	14	3	CSF1R	intronic	NA
MB_Group4_T1--GL	chr5:149474016	A	NA	98	0	98	37.582	3.479	0	0	0	95	0	CSF1R	intronic	NA
MB_Group4_T1--1	chr5:149912344	T	C	24	0.292	17	38.118	2.870	7	36.714	0.756	17	7	NDST1	intronic	NA
MB_Group4_T1--2	chr5:149912344	T	C	15	0.267	10	38.400	3.748	4	38.000	1.155	9	4	NDST1	intronic	NA
MB_Group4_T1--3	chr5:149912344	T	C	94	0.053	89	38.146	5.491	5	36.000	2.236	85	5	NDST1	intronic	NA
MB_Group4_T1--4	chr5:149912344	T	C	17	0.176	14	34.000	9.806	3	36.333	1.155	12	3	NDST1	intronic	NA
MB_Group4_T1--5	chr5:149912344	T	C	94	0.181	77	38.610	3.180	17	34.941	4.451	75	15	NDST1	intronic	NA
MB_Group4_T1--6	chr5:149912344	T	C	14	0.143	12	38.917	2.466	2	37.000	0.000	12	2	NDST1	intronic	NA
MB_Group4_T1--GL	chr5:149912344	T	NA	36	0	35	38.829	2.526	0	0	0	34	0	NDST1	intronic	NA
MB_Group4_T1--1	chr5:150429493	C	NA	20	0	20	37.450	2.395	0	0	0	20	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr5:150429493	C	NA	28	0	28	37.786	2.644	0	0	0	28	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr5:150429493	C	NA	65	0	65	36.154	4.105	0	0	0	61	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr5:150429493	C	NA	21	0	21	36.143	3.410	0	0	0	19	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr5:150429493	C	NA	33	0	33	36.303	3.005	0	0	0	33	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr5:150429493	C	A	14	0.214	11	36.727	4.125	3	36.000	1.000	10	3	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr5:150429493	C	NA	88	0	88	35.750	4.024	0	0	0	83	0	TNIP1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr5:2787582	C	NA	43	0	43	37.279	6.029	0	0	0	40	0	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--2	chr5:2787582	C	NA	35	0	35	37.943	4.671	0	0	0	34	0	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--3	chr5:2787582	C	A	73	0.014	71	38.437	3.741	1	41.000	0.000	69	1	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--4	chr5:2787582	C	NA	43	0	42	37.881	5.460	0	0	0	40	0	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--5	chr5:2787582	C	A	16	0.250	12	36.833	3.298	4	37.500	4.359	12	4	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--6	chr5:2787582	C	NA	30	0	30	38.833	3.018	0	0	0	29	0	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--GL	chr5:2787582	C	NA	108	0	108	38.056	2.685	0	0	0	108	0	C5orf38(dist=32071),LOC102467074(dist=390367)	intergenic	NA
MB_Group4_T1--1	chr5:35014355	A	G	28	0.107	24	36.792	2.874	3	35.333	2.887	24	3	AGXT2	intronic	NA
MB_Group4_T1--2	chr5:35014355	A	G	21	0.143	18	37.000	2.828	3	37.000	0.000	18	3	AGXT2	intronic	NA
MB_Group4_T1--3	chr5:35014355	A	G	78	0.013	77	36.701	3.773	1	37.000	0.000	74	1	AGXT2	intronic	NA
MB_Group4_T1--4	chr5:35014355	A	G	13	0.077	12	35.667	3.701	1	35.000	0.000	11	1	AGXT2	intronic	NA
MB_Group4_T1--5	chr5:35014355	A	G	73	0.219	57	36.281	4.847	16	37.062	0.929	53	16	AGXT2	intronic	NA
MB_Group4_T1--6	chr5:35014355	A	G	17	0.176	14	36.786	2.577	3	36.333	1.155	14	3	AGXT2	intronic	NA
MB_Group4_T1--GL	chr5:35014355	A	NA	64	0	64	36.453	3.948	0	0	0	61	0	AGXT2	intronic	NA
MB_Group4_T1--1	chr5:37046254	C	NA	49	0	49	37.878	5.438	0	0	0	48	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr5:37046254	C	A	31	0.129	27	38.296	3.635	4	41.000	0.000	26	4	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr5:37046254	C	NA	57	0	57	38.193	4.286	0	0	0	55	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr5:37046254	C	NA	28	0	28	38.464	2.575	0	0	0	28	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr5:37046254	C	NA	19	0	19	38.474	3.405	0	0	0	18	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr5:37046254	C	NA	22	0	22	38.727	2.529	0	0	0	22	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr5:37046254	C	NA	99	0	99	38.040	3.870	0	0	0	93	0	NIPBL	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr5:37333405	T	C	19	0.053	18	35.444	4.273	1	37.000	0.000	17	1	NUP155	intronic	NA
MB_Group4_T1--2	chr5:37333405	T	C	20	0.150	17	36.059	3.381	3	34.333	3.055	16	3	NUP155	intronic	NA
MB_Group4_T1--3	chr5:37333405	T	C	72	0.042	69	36.928	4.679	3	33.000	6.928	67	2	NUP155	intronic	NA
MB_Group4_T1--4	chr5:37333405	T	C	14	0.071	13	36.462	4.576	1	32.000	0.000	11	1	NUP155	intronic	NA
MB_Group4_T1--5	chr5:37333405	T	C	59	0.153	50	34.900	5.144	9	32.778	8.786	44	8	NUP155	intronic	NA
MB_Group4_T1--6	chr5:37333405	T	C	10	0.200	8	35.875	6.534	2	34.500	3.536	7	2	NUP155	intronic	NA
MB_Group4_T1--GL	chr5:37333405	T	NA	44	0	44	36.636	3.616	0	0	0	42	0	NUP155	intronic	NA
MB_Group4_T1--1	chr5:38502626	G	A	28	0.036	27	35.556	4.060	1	34.000	0.000	25	1	LIFR	intronic	NA
MB_Group4_T1--2	chr5:38502626	G	A	15	0.333	10	34.300	7.364	5	34.400	2.793	7	5	LIFR	intronic	NA
MB_Group4_T1--3	chr5:38502626	G	A	74	0.081	68	36.118	4.237	6	34.500	1.975	64	6	LIFR	intronic	NA
MB_Group4_T1--4	chr5:38502626	G	A	12	0.083	11	33.545	5.126	1	37.000	0.000	8	1	LIFR	intronic	NA
MB_Group4_T1--5	chr5:38502626	G	A	48	0.042	46	35.435	6.414	2	35.000	0.000	41	2	LIFR	intronic	NA
MB_Group4_T1--6	chr5:38502626	G	A	13	0.077	12	31.083	6.947	1	37.000	0.000	8	1	LIFR	intronic	NA
MB_Group4_T1--GL	chr5:38502626	G	NA	62	0	62	36.113	3.938	0	0	0	58	0	LIFR	intronic	NA
MB_Group4_T1--1	chr5:38966842	A	NA	27	0	27	36.852	2.583	0	0	0	27	0	RICTOR	intronic	NA
MB_Group4_T1--2	chr5:38966842	A	NA	20	0	20	37.550	2.417	0	0	0	20	0	RICTOR	intronic	NA
MB_Group4_T1--3	chr5:38966842	A	NA	22	0	22	36.455	3.985	0	0	0	21	0	RICTOR	intronic	NA
MB_Group4_T1--4	chr5:38966842	A	NA	17	0	17	35.941	6.240	0	0	0	16	0	RICTOR	intronic	NA
MB_Group4_T1--5	chr5:38966842	A	NA	11	0	11	36.364	2.838	0	0	0	11	0	RICTOR	intronic	NA
MB_Group4_T1--6	chr5:38966842	A	G	13	0.308	9	37.667	2.291	4	37.000	0.816	9	4	RICTOR	intronic	NA
MB_Group4_T1--GL	chr5:38966842	A	NA	39	0	39	36.795	3.427	0	0	0	37	0	RICTOR	intronic	NA
MB_Group4_T1--1	chr5:39389874	G	A	18	0.222	12	34.583	6.973	4	33.750	2.062	11	4	DAB2	intronic	NA
MB_Group4_T1--2	chr5:39389874	G	A	17	0.235	12	37.333	4.030	4	33.500	1.732	11	4	DAB2	intronic	NA
MB_Group4_T1--3	chr5:39389874	G	A	33	0.030	32	36.750	6.638	1	34.000	0.000	30	1	DAB2	intronic	NA
MB_Group4_T1--4	chr5:39389874	G	NA	10	0	10	37.700	2.263	0	0	0	10	0	DAB2	intronic	NA
MB_Group4_T1--5	chr5:39389874	G	NA	24	0	23	36.739	5.586	0	0	0	21	0	DAB2	intronic	NA
MB_Group4_T1--6	chr5:39389874	G	NA	10	0	10	38.300	3.433	0	0	0	10	0	DAB2	intronic	NA
MB_Group4_T1--GL	chr5:39389874	G	NA	60	0	60	37.883	4.063	0	0	0	57	0	DAB2	intronic	NA
MB_Group4_T1--1	chr5:55800554	C	NA	18	0	18	36.611	5.359	0	0	0	16	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--2	chr5:55800554	C	NA	19	0	19	38.105	2.685	0	0	0	19	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--3	chr5:55800554	C	NA	59	0	59	37.644	3.279	0	0	0	58	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--4	chr5:55800554	C	A	17	0.176	14	36.643	5.168	3	41.000	0.000	13	3	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--5	chr5:55800554	C	NA	14	0	14	38.571	2.344	0	0	0	14	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--6	chr5:55800554	C	NA	21	0	21	37.905	2.809	0	0	0	21	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--GL	chr5:55800554	C	NA	34	0	34	37.765	2.629	0	0	0	34	0	LOC102467147(dist=22958),LOC101928448(dist=6667)	intergenic	NA
MB_Group4_T1--1	chr5:64933704	A	G	23	0.261	17	38.588	2.501	6	36.667	0.816	17	6	TRAPPC13	intronic	NA
MB_Group4_T1--2	chr5:64933704	A	G	32	0.250	24	39.292	2.236	8	33.875	7.279	24	7	TRAPPC13	intronic	NA
MB_Group4_T1--3	chr5:64933704	A	G	44	0.205	35	38.457	3.913	9	36.778	0.667	34	9	TRAPPC13	intronic	NA
MB_Group4_T1--4	chr5:64933704	A	G	11	0.273	8	36.375	5.605	3	37.000	0.000	7	3	TRAPPC13	intronic	NA
MB_Group4_T1--5	chr5:64933704	A	G	81	0.160	67	38.806	2.687	13	34.923	5.008	66	12	TRAPPC13	intronic	NA
MB_Group4_T1--6	chr5:64933704	A	G	11	0.364	7	38.143	3.805	4	36.500	1.000	7	4	TRAPPC13	intronic	NA
MB_Group4_T1--GL	chr5:64933704	A	NA	48	0	48	38.083	3.254	0	0	0	47	0	TRAPPC13	intronic	NA
MB_Group4_T1--1	chr5:66441179	C	NA	31	0	31	36.613	3.413	0	0	0	30	0	MAST4	exonic	synonymous_SNV
MB_Group4_T1--2	chr5:66441179	C	NA	20	0	20	37.350	3.964	0	0	0	19	0	MAST4	exonic	synonymous_SNV
MB_Group4_T1--3	chr5:66441179	C	A	115	0.009	114	35.298	4.213	1	37.000	0.000	108	1	MAST4	exonic	synonymous_SNV
MB_Group4_T1--4	chr5:66441179	C	NA	23	0	23	35.130	3.455	0	0	0	22	0	MAST4	exonic	synonymous_SNV
MB_Group4_T1--5	chr5:66441179	C	A	27	0.037	26	35.500	3.636	1	41.000	0.000	24	1	MAST4	exonic	synonymous_SNV
MB_Group4_T1--6	chr5:66441179	C	A	11	0.273	8	35.125	2.416	3	34.667	5.508	8	2	MAST4	exonic	synonymous_SNV
MB_Group4_T1--GL	chr5:66441179	C	NA	106	0	106	35.774	4.347	0	0	0	101	0	MAST4	exonic	synonymous_SNV
MB_Group4_T1--1	chr5:72285345	C	NA	53	0	53	36.811	4.000	0	0	0	49	0	FCHO2	intronic	NA
MB_Group4_T1--2	chr5:72285345	C	NA	33	0	33	38.606	2.499	0	0	0	33	0	FCHO2	intronic	NA
MB_Group4_T1--3	chr5:72285345	C	NA	77	0	77	36.532	6.073	0	0	0	71	0	FCHO2	intronic	NA
MB_Group4_T1--4	chr5:72285345	C	A	22	0.182	18	35.111	6.936	4	38.000	1.826	15	4	FCHO2	intronic	NA
MB_Group4_T1--5	chr5:72285345	C	NA	15	0	15	37.733	3.011	0	0	0	15	0	FCHO2	intronic	NA
MB_Group4_T1--6	chr5:72285345	C	NA	28	0	28	37.179	2.894	0	0	0	27	0	FCHO2	intronic	NA
MB_Group4_T1--GL	chr5:72285345	C	NA	92	0	92	36.946	4.592	0	0	0	87	0	FCHO2	intronic	NA
MB_Group4_T1--1	chr5:74011593	G	A	34	0.265	25	37.560	6.627	9	34.778	1.202	24	9	HEXB	intronic	NA
MB_Group4_T1--2	chr5:74011593	G	A	24	0.250	18	35.944	5.196	6	35.667	1.033	15	6	HEXB	intronic	NA
MB_Group4_T1--3	chr5:74011593	G	A	75	0.067	70	37.629	3.452	5	36.200	1.095	67	5	HEXB	intronic	NA
MB_Group4_T1--4	chr5:74011593	G	A	21	0.190	17	37.647	2.914	4	35.500	1.000	17	4	HEXB	intronic	NA
MB_Group4_T1--5	chr5:74011593	G	A	76	0.158	63	36.524	5.373	12	34.917	1.084	60	12	HEXB	intronic	NA
MB_Group4_T1--6	chr5:74011593	G	A	10	0.100	9	38.000	2.828	1	35.000	0.000	9	1	HEXB	intronic	NA
MB_Group4_T1--GL	chr5:74011593	G	NA	61	0	61	37.475	3.355	0	0	0	59	0	HEXB	intronic	NA
MB_Group4_T1--1	chr5:94826450	T	C	26	0.192	21	37.238	4.242	5	35.800	2.683	19	5	TTC37	intronic	NA
MB_Group4_T1--2	chr5:94826450	T	NA	14	0	14	38.214	3.446	0	0	0	14	0	TTC37	intronic	NA
MB_Group4_T1--3	chr5:94826450	T	C	74	0.108	65	38.415	3.245	8	37.000	0.000	64	8	TTC37	intronic	NA
MB_Group4_T1--4	chr5:94826450	T	NA	10	0	10	38.900	2.331	0	0	0	10	0	TTC37	intronic	NA
MB_Group4_T1--5	chr5:94826450	T	C	55	0.127	48	37.729	3.194	7	34.286	4.855	47	6	TTC37	intronic	NA
MB_Group4_T1--6	chr5:94826450	T	C	18	0.111	16	37.938	3.151	2	37.000	0.000	16	2	TTC37	intronic	NA
MB_Group4_T1--GL	chr5:94826450	T	NA	45	0	45	37.356	3.874	0	0	0	44	0	TTC37	intronic	NA
MB_Group4_T1--1	chr6:126332554	A	NA	19	0	19	38.211	2.760	0	0	0	19	0	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:126332554	A	G	31	0.032	30	39.000	2.304	1	36.000	0.000	30	1	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:126332554	A	NA	40	0	40	38.575	2.049	0	0	0	40	0	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:126332554	A	NA	18	0	18	36.000	5.678	0	0	0	16	0	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:126332554	A	G	16	0.250	12	38.500	2.067	4	35.500	1.291	12	4	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:126332554	A	NA	20	0	20	38.250	1.803	0	0	0	20	0	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:126332554	A	NA	73	0	73	37.110	2.870	0	0	0	73	0	TRMT11	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:142718803	A	G	40	0.200	32	36.281	5.709	8	38.375	2.875	29	8	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:142718803	A	NA	48	0	48	38.188	2.788	0	0	0	48	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:142718803	A	NA	56	0	56	37.929	3.500	0	0	0	55	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:142718803	A	NA	48	0	48	37.854	6.042	0	0	0	45	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:142718803	A	NA	22	0	22	37.818	3.936	0	0	0	20	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:142718803	A	NA	19	0	19	38.737	2.306	0	0	0	19	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:142718803	A	NA	144	0	144	37.500	3.702	0	0	0	138	0	GPR126	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:152555648	C	NA	17	0	17	35.529	7.899	0	0	0	16	0	SYNE1	intronic	NA
MB_Group4_T1--2	chr6:152555648	C	T	20	0.050	19	37.526	4.074	1	37.000	0.000	18	1	SYNE1	intronic	NA
MB_Group4_T1--3	chr6:152555648	C	T	75	0.027	73	36.507	5.467	2	37.000	0.000	69	2	SYNE1	intronic	NA
MB_Group4_T1--4	chr6:152555648	C	NA	10	0	10	39.000	2.055	0	0	0	10	0	SYNE1	intronic	NA
MB_Group4_T1--5	chr6:152555648	C	T	50	0.140	43	36.744	4.510	7	36.857	0.900	40	7	SYNE1	intronic	NA
MB_Group4_T1--6	chr6:152555648	C	T	20	0.150	17	36.706	6.678	3	34.667	4.041	16	3	SYNE1	intronic	NA
MB_Group4_T1--GL	chr6:152555648	C	NA	56	0	56	38.054	2.300	0	0	0	56	0	SYNE1	intronic	NA
MB_Group4_T1--1	chr6:152560962	A	NA	21	0	20	38.850	2.996	0	0	0	20	0	SYNE1	intronic	NA
MB_Group4_T1--2	chr6:152560962	A	G	23	0.130	20	38.350	3.689	3	36.000	1.732	19	3	SYNE1	intronic	NA
MB_Group4_T1--3	chr6:152560962	A	G	97	0.103	87	38.448	3.608	10	36.000	1.764	85	10	SYNE1	intronic	NA
MB_Group4_T1--4	chr6:152560962	A	G	17	0.059	16	38.250	3.337	1	37.000	0.000	16	1	SYNE1	intronic	NA
MB_Group4_T1--5	chr6:152560962	A	G	52	0.308	36	38.833	2.432	16	36.250	1.732	36	16	SYNE1	intronic	NA
MB_Group4_T1--6	chr6:152560962	A	G	15	0.067	14	37.571	6.676	1	37.000	0.000	13	1	SYNE1	intronic	NA
MB_Group4_T1--GL	chr6:152560962	A	NA	79	0	79	38.468	3.601	0	0	0	77	0	SYNE1	intronic	NA
MB_Group4_T1--1	chr6:152560964	T	C	21	0.048	20	38.950	2.438	1	37.000	0.000	20	1	SYNE1	intronic	NA
MB_Group4_T1--2	chr6:152560964	T	C	22	0.091	20	36.650	6.319	2	33.500	0.707	18	2	SYNE1	intronic	NA
MB_Group4_T1--3	chr6:152560964	T	C	95	0.105	85	37.941	4.269	10	36.200	1.398	82	10	SYNE1	intronic	NA
MB_Group4_T1--4	chr6:152560964	T	C	18	0.056	17	36.353	5.454	1	37.000	0.000	15	1	SYNE1	intronic	NA
MB_Group4_T1--5	chr6:152560964	T	C	55	0.291	39	37.590	3.385	16	34.812	2.455	38	16	SYNE1	intronic	NA
MB_Group4_T1--6	chr6:152560964	T	C	14	0.071	13	38.000	3.719	1	37.000	0.000	13	1	SYNE1	intronic	NA
MB_Group4_T1--GL	chr6:152560964	T	NA	82	0	82	37.573	4.439	0	0	0	79	0	SYNE1	intronic	NA
MB_Group4_T1--1	chr6:152655027	T	C	22	0.091	20	36.750	3.370	2	37.000	0.000	19	2	SYNE1	intronic	NA
MB_Group4_T1--2	chr6:152655027	T	C	29	0.103	26	37.962	3.481	3	37.000	0.000	25	3	SYNE1	intronic	NA
MB_Group4_T1--3	chr6:152655027	T	C	57	0.018	56	37.714	4.507	1	39.000	0.000	53	1	SYNE1	intronic	NA
MB_Group4_T1--4	chr6:152655027	T	NA	19	0	19	38.053	3.659	0	0	0	19	0	SYNE1	intronic	NA
MB_Group4_T1--5	chr6:152655027	T	C	24	0.208	19	39.158	2.089	5	37.400	0.894	19	5	SYNE1	intronic	NA
MB_Group4_T1--6	chr6:152655027	T	NA	13	0	13	36.846	4.140	0	0	0	12	0	SYNE1	intronic	NA
MB_Group4_T1--GL	chr6:152655027	T	NA	65	0	65	38.754	2.942	0	0	0	63	0	SYNE1	intronic	NA
MB_Group4_T1--1	chr6:153311227	C	NA	25	0	25	38.080	2.707	0	0	0	25	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--2	chr6:153311227	C	NA	24	0	24	37.875	3.040	0	0	0	24	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--3	chr6:153311227	C	NA	88	0	88	38.114	3.631	0	0	0	83	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--4	chr6:153311227	C	NA	21	0	21	37.095	4.182	0	0	0	20	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--5	chr6:153311227	C	NA	24	0	24	37.167	5.247	0	0	0	22	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--6	chr6:153311227	C	A	14	0.214	11	37.818	4.600	3	40.333	1.155	10	3	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--GL	chr6:153311227	C	NA	69	0	69	38.391	2.562	0	0	0	69	0	MTRF1L	exonic	stopgain_SNV
MB_Group4_T1--1	chr6:15595557	G	A	31	0.161	26	38.192	2.450	5	35.600	0.894	26	5	DTNBP1	intronic	NA
MB_Group4_T1--2	chr6:15595557	G	A	26	0.154	22	35.909	4.587	4	36.500	1.000	21	4	DTNBP1	intronic	NA
MB_Group4_T1--3	chr6:15595557	G	A	89	0.213	70	36.286	5.045	19	35.947	2.321	67	18	DTNBP1	intronic	NA
MB_Group4_T1--4	chr6:15595557	G	A	11	0.273	8	36.375	2.925	3	37.000	0.000	8	3	DTNBP1	intronic	NA
MB_Group4_T1--5	chr6:15595557	G	A	64	0.328	41	35.390	5.366	21	35.714	1.454	38	21	DTNBP1	intronic	NA
MB_Group4_T1--6	chr6:15595557	G	A	13	0.077	12	35.333	4.658	1	37.000	0.000	11	1	DTNBP1	intronic	NA
MB_Group4_T1--GL	chr6:15595557	G	NA	56	0	56	37.304	3.057	0	0	0	54	0	DTNBP1	intronic	NA
MB_Group4_T1--1	chr6:15595558	T	C	34	0.147	29	37.724	2.724	5	35.600	3.130	29	5	DTNBP1	intronic	NA
MB_Group4_T1--2	chr6:15595558	T	C	30	0.133	26	33.962	5.040	4	37.000	0.000	22	4	DTNBP1	intronic	NA
MB_Group4_T1--3	chr6:15595558	T	C	88	0.193	70	36.714	2.959	17	35.471	4.332	68	16	DTNBP1	intronic	NA
MB_Group4_T1--4	chr6:15595558	T	C	12	0.250	9	35.556	4.419	3	37.000	0.000	8	3	DTNBP1	intronic	NA
MB_Group4_T1--5	chr6:15595558	T	C	63	0.333	42	34.167	6.064	21	36.619	0.805	36	21	DTNBP1	intronic	NA
MB_Group4_T1--6	chr6:15595558	T	C	15	0.067	14	35.143	3.613	1	37.000	0.000	14	1	DTNBP1	intronic	NA
MB_Group4_T1--GL	chr6:15595558	T	NA	59	0	59	36.831	3.217	0	0	0	57	0	DTNBP1	intronic	NA
MB_Group4_T1--1	chr6:158565346	C	NA	23	0	23	37.174	3.010	0	0	0	23	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:158565346	C	NA	29	0	29	37.000	3.036	0	0	0	29	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:158565346	C	NA	35	0	35	36.743	3.184	0	0	0	35	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:158565346	C	A	24	0.167	20	37.650	4.475	4	36.000	3.916	19	4	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:158565346	C	NA	13	0	12	36.250	4.555	0	0	0	11	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:158565346	C	NA	13	0	13	36.769	3.563	0	0	0	13	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:158565346	C	NA	47	0	47	36.766	3.447	0	0	0	45	0	SERAC1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:158925130	C	A	28	0.143	24	36.500	4.836	4	37.250	3.862	23	4	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:158925130	C	NA	26	0	26	36.077	3.979	0	0	0	25	0	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:158925130	C	NA	115	0	115	35.783	4.418	0	0	0	107	0	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:158925130	C	NA	13	0	13	36.231	3.219	0	0	0	13	0	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:158925130	C	A	51	0.039	49	36.122	2.728	2	31.000	4.243	49	1	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:158925130	C	NA	25	0	25	34.080	4.991	0	0	0	21	0	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:158925130	C	NA	56	0	56	36.161	3.907	0	0	0	53	0	TULP4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:166743060	C	NA	22	0	22	37.091	2.759	0	0	0	22	0	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:166743060	C	NA	28	0	28	36.964	5.561	0	0	0	26	0	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:166743060	C	G	47	0.277	34	37.235	3.726	13	37.385	5.470	33	12	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:166743060	C	NA	19	0	19	37.632	3.833	0	0	0	18	0	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:166743060	C	G	22	0.045	21	37.571	3.655	1	35.000	0.000	20	1	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:166743060	C	NA	14	0	14	37.000	6.782	0	0	0	13	0	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:166743060	C	NA	50	0	50	36.780	3.716	0	0	0	49	0	SFT2D1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:167352620	G	NA	23	0	23	36.565	3.616	0	0	0	22	0	RNASET2	intronic	NA
MB_Group4_T1--2	chr6:167352620	G	A	20	0.100	18	36.722	3.578	2	37.000	0.000	17	2	RNASET2	intronic	NA
MB_Group4_T1--3	chr6:167352620	G	A	91	0.033	88	37.614	2.969	3	37.000	0.000	86	3	RNASET2	intronic	NA
MB_Group4_T1--4	chr6:167352620	G	NA	15	0	15	36.933	3.105	0	0	0	15	0	RNASET2	intronic	NA
MB_Group4_T1--5	chr6:167352620	G	A	61	0.148	51	36.588	3.573	9	37.000	0.000	49	9	RNASET2	intronic	NA
MB_Group4_T1--6	chr6:167352620	G	NA	12	0	12	37.083	2.539	0	0	0	12	0	RNASET2	intronic	NA
MB_Group4_T1--GL	chr6:167352620	G	NA	58	0	58	37.500	3.085	0	0	0	57	0	RNASET2	intronic	NA
MB_Group4_T1--1	chr6:18131121	A	NA	28	0	28	36.607	3.213	0	0	0	28	0	TPMT	intronic	NA
MB_Group4_T1--2	chr6:18131121	A	G	33	0.182	27	36.889	3.309	6	35.000	1.789	25	6	TPMT	intronic	NA
MB_Group4_T1--3	chr6:18131121	A	G	71	0.056	67	36.224	4.852	4	35.750	1.500	61	4	TPMT	intronic	NA
MB_Group4_T1--4	chr6:18131121	A	G	17	0.118	15	34.400	8.244	2	36.000	1.414	13	2	TPMT	intronic	NA
MB_Group4_T1--5	chr6:18131121	A	G	78	0.038	75	35.707	6.438	3	36.667	2.082	67	3	TPMT	intronic	NA
MB_Group4_T1--6	chr6:18131121	A	G	22	0.091	20	36.300	3.988	2	37.000	0.000	19	2	TPMT	intronic	NA
MB_Group4_T1--GL	chr6:18131121	A	NA	44	0	44	34.614	6.824	0	0	0	39	0	TPMT	intronic	NA
MB_Group4_T1--1	chr6:24701829	C	NA	28	0	28	35.929	1.904	0	0	0	28	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:24701829	C	NA	18	0	18	36.833	1.886	0	0	0	18	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:24701829	C	NA	27	0	27	35.778	2.118	0	0	0	27	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:24701829	C	NA	11	0	11	34.818	3.401	0	0	0	10	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:24701829	C	A	13	0.231	10	34.600	3.471	3	36.000	2.646	9	3	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:24701829	C	NA	11	0	11	35.091	3.936	0	0	0	10	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:24701829	C	NA	37	0	37	35.703	3.161	0	0	0	36	0	ACOT13	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:26027294	G	A	29	0.069	27	35.296	4.530	2	37.000	0.000	24	2	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:26027294	G	A	32	0.188	26	35.115	5.256	6	36.333	1.033	23	6	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:26027294	G	NA	109	0	108	36.935	3.899	0	0	0	103	0	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:26027294	G	A	23	0.087	21	37.571	3.124	2	37.000	0.000	21	2	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:26027294	G	A	39	0.077	36	36.222	4.155	3	35.667	1.155	33	3	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:26027294	G	A	22	0.091	20	35.800	5.043	2	34.000	1.414	19	2	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:26027294	G	NA	85	0	85	36.341	3.372	0	0	0	81	0	HIST1H4B	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:27775514	A	G	57	0.158	48	36.479	5.279	9	36.778	2.048	45	9	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:27775514	A	G	61	0.049	58	36.897	2.942	3	36.333	1.155	57	3	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:27775514	A	G	183	0.033	177	35.921	4.300	6	37.333	0.816	167	6	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:27775514	A	NA	38	0	38	36.263	2.344	0	0	0	38	0	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:27775514	A	G	137	0.066	128	36.836	3.179	9	36.667	1.414	124	9	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:27775514	A	G	40	0.100	36	37.000	2.839	4	37.000	0.000	35	4	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:27775514	A	NA	111	0	111	36.198	4.143	0	0	0	104	0	HIST1H2BL	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:27775845	A	C	34	0.147	29	35.897	4.624	5	37.000	0.000	26	5	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--2	chr6:27775845	A	C	26	0.154	21	36.286	4.349	4	37.000	0.000	20	4	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--3	chr6:27775845	A	C	93	0.065	87	36.414	4.170	6	37.667	1.633	81	6	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--4	chr6:27775845	A	C	16	0.250	12	36.667	2.934	4	34.000	4.761	12	3	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--5	chr6:27775845	A	C	51	0.059	48	35.771	3.996	3	37.000	0.000	45	3	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--6	chr6:27775845	A	C	13	0.077	12	35.833	4.064	1	39.000	0.000	11	1	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--GL	chr6:27775845	A	NA	38	0	38	36.184	5.784	0	0	0	34	0	HIST1H2AI,HIST1H2BL	upstream	NA
MB_Group4_T1--1	chr6:29274942	C	A	26	0.154	22	36.591	7.202	4	37.750	1.708	21	4	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:29274942	C	NA	32	0	32	36.625	3.799	0	0	0	30	0	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:29274942	C	A	137	0.022	134	37.127	4.921	3	38.333	3.055	125	3	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:29274942	C	A	24	0.042	23	37.261	3.887	1	36.000	0.000	21	1	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:29274942	C	NA	25	0	25	38.480	3.380	0	0	0	24	0	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:29274942	C	NA	20	0	20	36.950	3.052	0	0	0	20	0	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:29274942	C	NA	93	0	93	36.118	5.884	0	0	0	88	0	OR14J1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:29637807	G	A	30	0.200	24	35.875	4.111	6	31.333	10.820	23	5	MOG	intronic	NA
MB_Group4_T1--2	chr6:29637807	G	A	30	0.200	24	36.958	4.868	6	37.333	0.816	22	6	MOG	intronic	NA
MB_Group4_T1--3	chr6:29637807	G	A	101	0.109	90	36.944	4.048	11	35.818	1.834	85	11	MOG	intronic	NA
MB_Group4_T1--4	chr6:29637807	G	A	25	0.040	24	37.167	2.514	1	32.000	0.000	24	1	MOG	intronic	NA
MB_Group4_T1--5	chr6:29637807	G	A	63	0.190	50	35.640	6.930	12	36.917	0.669	42	12	MOG	intronic	NA
MB_Group4_T1--6	chr6:29637807	G	A	11	0.091	10	33.700	8.590	1	37.000	0.000	8	1	MOG	intronic	NA
MB_Group4_T1--GL	chr6:29637807	G	NA	99	0	99	36.727	5.423	0	0	0	92	0	MOG	intronic	NA
MB_Group4_T1--1	chr6:29637812	T	C	32	0.250	23	34.174	5.702	8	35.625	3.420	19	8	MOG	intronic	NA
MB_Group4_T1--2	chr6:29637812	T	C	36	0.194	29	36.069	3.654	7	38.143	1.676	27	7	MOG	intronic	NA
MB_Group4_T1--3	chr6:29637812	T	C	114	0.105	102	33.804	5.542	12	36.917	2.906	88	12	MOG	intronic	NA
MB_Group4_T1--4	chr6:29637812	T	NA	29	0	28	35.464	3.339	0	0	0	27	0	MOG	intronic	NA
MB_Group4_T1--5	chr6:29637812	T	C	72	0.208	56	32.946	7.031	15	36.333	5.851	45	14	MOG	intronic	NA
MB_Group4_T1--6	chr6:29637812	T	C	12	0.083	10	32.600	9.454	1	39.000	0.000	8	1	MOG	intronic	NA
MB_Group4_T1--GL	chr6:29637812	T	NA	113	0	112	33.473	5.674	0	0	0	94	0	MOG	intronic	NA
MB_Group4_T1--1	chr6:31778229	A	NA	20	0	20	36.150	6.714	0	0	0	19	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:31778229	A	G	24	0.208	19	37.421	2.411	5	36.600	0.894	19	5	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:31778229	A	NA	111	0	111	36.775	4.255	0	0	0	105	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:31778229	A	G	14	0.071	12	35.833	3.040	1	37.000	0.000	12	1	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:31778229	A	G	60	0.033	57	36.140	4.537	2	37.000	0.000	53	2	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:31778229	A	NA	12	0	12	37.333	1.923	0	0	0	12	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:31778229	A	NA	39	0	39	36.718	3.832	0	0	0	36	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:31778701	C	T	61	0.213	48	36.125	4.639	13	32.846	3.211	42	12	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:31778701	C	T	77	0.143	66	36.106	4.445	11	34.091	3.590	63	10	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:31778701	C	T	258	0.008	255	36.973	3.874	2	37.000	0.000	247	2	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:31778701	C	T	38	0.158	32	37.094	3.402	6	34.667	1.366	32	6	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:31778701	C	T	149	0.060	140	37.214	4.768	9	34.556	2.744	134	9	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:31778701	C	T	36	0.056	34	37.059	3.054	2	35.000	5.657	34	2	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:31778701	C	NA	103	0	103	37.340	3.207	0	0	0	101	0	HSPA1L	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:31778702	G	T	60	0.217	47	36.128	4.776	13	33.000	5.568	44	11	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:31778702	G	T	77	0.143	66	36.636	3.670	11	36.273	1.348	63	11	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:31778702	G	T	255	0.008	253	36.549	4.896	2	37.000	0.000	239	2	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:31778702	G	T	38	0.158	32	37.406	3.783	6	35.500	1.225	30	6	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:31778702	G	T	150	0.060	141	36.837	4.339	9	36.000	1.732	133	9	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:31778702	G	T	36	0.083	32	37.094	3.995	3	38.333	2.309	30	3	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:31778702	G	NA	102	0	101	37.426	3.112	0	0	0	99	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:31779033	A	C	65	0.077	60	36.400	6.285	5	35.400	3.847	55	4	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:31779033	A	C	83	0.181	68	37.735	3.331	15	33.267	8.040	65	14	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:31779033	A	C	327	0.015	322	35.966	7.057	5	34.600	2.608	291	5	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:31779033	A	C	59	0.119	52	36.327	5.287	7	31.857	11.067	46	6	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:31779033	A	C	215	0.093	195	36.882	4.998	20	36.150	2.231	180	20	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:31779033	A	C	58	0.103	52	36.808	5.828	6	35.333	2.658	48	6	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:31779033	A	NA	116	0	116	37.129	4.758	0	0	0	111	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:31779591	A	G	76	0.158	64	36.719	5.227	12	35.500	3.802	61	11	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:31779591	A	G	62	0.258	46	37.348	3.542	16	34.875	4.829	45	14	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:31779591	A	G	191	0.016	188	36.670	4.562	3	37.000	0.000	179	3	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:31779591	A	G	42	0.238	32	37.062	4.272	10	36.900	1.663	29	10	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:31779591	A	G	124	0.097	111	36.486	4.854	12	36.667	0.778	104	12	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:31779591	A	G	51	0.098	46	36.826	4.543	5	37.000	0.000	42	5	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:31779591	A	NA	110	0	110	36.655	4.721	0	0	0	106	0	HSPA1L	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:34385590	C	NA	18	0	18	37.444	3.148	0	0	0	18	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--2	chr6:34385590	C	T	14	0.214	11	36.273	7.058	3	35.000	1.000	9	3	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--3	chr6:34385590	C	NA	54	0	54	37.185	4.915	0	0	0	53	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--4	chr6:34385590	C	NA	14	0	14	36.286	4.480	0	0	0	13	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--5	chr6:34385590	C	NA	17	0	17	37.882	4.357	0	0	0	16	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--6	chr6:34385590	C	NA	16	0	16	36.000	5.514	0	0	0	15	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--GL	chr6:34385590	C	NA	43	0	43	38.349	2.716	0	0	0	43	0	RPS10,RPS10-NUDT3	intronic	NA
MB_Group4_T1--1	chr6:36882177	G	NA	17	0	17	38.000	2.937	0	0	0	17	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:36882177	G	NA	20	0	20	36.450	3.426	0	0	0	20	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:36882177	G	NA	60	0	60	36.450	3.326	0	0	0	59	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:36882177	G	T	14	0.214	11	35.636	3.585	3	39.000	3.464	10	3	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:36882177	G	NA	40	0	40	35.550	4.696	0	0	0	35	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:36882177	G	NA	17	0	17	38.176	2.698	0	0	0	17	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:36882177	G	NA	83	0	83	36.675	4.359	0	0	0	80	0	C6orf89	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:37254734	C	NA	44	0	43	31.372	6.601	0	0	0	33	0	TBC1D22B	intronic	NA
MB_Group4_T1--2	chr6:37254734	C	NA	44	0	44	31.636	6.387	0	0	0	32	0	TBC1D22B	intronic	NA
MB_Group4_T1--3	chr6:37254734	C	A	74	0.027	72	31.833	6.983	2	31.000	5.657	56	1	TBC1D22B	intronic	NA
MB_Group4_T1--4	chr6:37254734	C	NA	25	0	25	29.560	10.393	0	0	0	19	0	TBC1D22B	intronic	NA
MB_Group4_T1--5	chr6:37254734	C	A	29	0.172	24	30.792	9.956	5	35.800	1.789	18	5	TBC1D22B	intronic	NA
MB_Group4_T1--6	chr6:37254734	C	A	20	0.050	19	33.895	5.435	1	33.000	0.000	15	1	TBC1D22B	intronic	NA
MB_Group4_T1--GL	chr6:37254734	C	NA	125	0	125	31.344	6.354	0	0	0	92	0	TBC1D22B	intronic	NA
MB_Group4_T1--1	chr6:41038812	T	NA	39	0	39	34.897	4.957	0	0	0	36	0	OARD1	intronic	NA
MB_Group4_T1--2	chr6:41038812	T	NA	33	0	33	34.667	4.233	0	0	0	28	0	OARD1	intronic	NA
MB_Group4_T1--3	chr6:41038812	T	C	84	0.226	65	34.508	4.944	19	36.158	2.267	60	19	OARD1	intronic	NA
MB_Group4_T1--4	chr6:41038812	T	C	32	0.062	30	35.133	4.058	2	38.000	4.243	28	2	OARD1	intronic	NA
MB_Group4_T1--5	chr6:41038812	T	C	70	0.043	67	35.209	4.785	3	32.667	8.737	60	2	OARD1	intronic	NA
MB_Group4_T1--6	chr6:41038812	T	C	29	0.069	27	32.778	6.435	2	38.000	4.243	24	2	OARD1	intronic	NA
MB_Group4_T1--GL	chr6:41038812	T	NA	63	0	63	34.286	5.458	0	0	0	53	0	OARD1	intronic	NA
MB_Group4_T1--1	chr6:41196482	C	NA	30	0	24	36.917	2.518	0	0	0	24	0	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:41196482	C	T	32	0.375	20	37.450	2.114	12	36.833	0.577	20	12	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:41196482	C	T	94	0.064	86	35.942	6.053	6	36.667	0.816	78	6	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:41196482	C	T	20	0.200	16	36.812	3.209	4	37.250	2.062	16	4	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:41196482	C	T	52	0.077	48	37.792	2.697	4	36.500	1.000	48	4	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:41196482	C	T	21	0.238	16	37.812	2.834	5	37.000	0.000	16	5	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:41196482	C	NA	41	0	41	37.146	3.525	0	0	0	40	0	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:41196483	C	A	30	0.033	23	36.522	4.804	1	37.000	0.000	22	1	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:41196483	C	A	33	0.364	21	38.143	1.878	12	36.667	1.155	21	12	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:41196483	C	A	95	0.074	88	36.557	5.128	7	37.000	1.155	82	7	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:41196483	C	A	20	0.200	16	37.188	2.316	4	37.500	2.517	16	4	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:41196483	C	A	51	0.078	47	38.043	2.349	4	37.000	0.000	47	4	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:41196483	C	A	21	0.238	16	37.938	2.955	5	37.000	0.000	16	5	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:41196483	C	NA	41	0	41	37.829	2.529	0	0	0	41	0	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:41196777	C	T	27	0.111	24	36.208	2.484	3	36.333	1.155	24	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:41196777	C	T	25	0.240	19	35.211	4.504	6	36.000	2.449	18	6	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:41196777	C	T	101	0.050	96	35.365	4.314	5	37.000	0.000	92	5	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:41196777	C	T	19	0.158	16	37.188	3.449	3	37.000	0.000	16	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:41196777	C	T	32	0.094	29	36.379	3.416	3	36.667	0.577	29	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:41196777	C	T	22	0.136	19	36.895	4.293	3	37.000	0.000	18	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:41196777	C	NA	44	0	44	36.568	3.295	0	0	0	43	0	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:41196779	C	G	27	0.111	24	36.167	2.239	3	37.000	0.000	24	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:41196779	C	G	25	0.240	19	35.263	5.269	6	36.500	1.225	18	6	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:41196779	C	G	100	0.050	95	35.084	5.154	5	37.000	0.000	91	5	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:41196779	C	G	18	0.167	15	37.400	3.376	3	37.000	0.000	15	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:41196779	C	G	32	0.094	29	36.552	3.460	3	35.667	1.155	28	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:41196779	C	G	21	0.143	18	38.111	2.698	3	36.333	1.155	18	3	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:41196779	C	NA	44	0	44	36.500	2.791	0	0	0	44	0	TREML4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:41197212	T	A	46	0.152	39	36.821	3.727	7	33.571	5.711	37	5	TREML4	intronic	NA
MB_Group4_T1--2	chr6:41197212	T	A	49	0.143	42	37.690	3.659	7	36.714	0.756	40	7	TREML4	intronic	NA
MB_Group4_T1--3	chr6:41197212	T	A	149	0.040	143	37.503	4.012	6	36.333	1.033	138	6	TREML4	intronic	NA
MB_Group4_T1--4	chr6:41197212	T	A	44	0.068	41	38.732	2.145	3	35.667	3.215	41	3	TREML4	intronic	NA
MB_Group4_T1--5	chr6:41197212	T	A	56	0.089	51	36.784	5.601	5	35.600	2.191	48	5	TREML4	intronic	NA
MB_Group4_T1--6	chr6:41197212	T	NA	21	0	20	37.050	2.819	0	0	0	20	0	TREML4	intronic	NA
MB_Group4_T1--GL	chr6:41197212	T	NA	79	0	79	37.304	4.642	0	0	0	75	0	TREML4	intronic	NA
MB_Group4_T1--1	chr6:43578584	G	A	30	0.133	26	39.846	1.617	4	37.000	0.000	26	4	POLH	intronic	NA
MB_Group4_T1--2	chr6:43578584	G	A	37	0.243	28	38.393	5.014	9	37.556	1.130	27	9	POLH	intronic	NA
MB_Group4_T1--3	chr6:43578584	G	A	91	0.044	86	39.151	3.793	4	38.000	2.000	84	4	POLH	intronic	NA
MB_Group4_T1--4	chr6:43578584	G	A	23	0.130	20	39.400	2.010	3	37.000	0.000	20	3	POLH	intronic	NA
MB_Group4_T1--5	chr6:43578584	G	A	92	0.076	85	38.529	4.330	7	38.000	1.915	80	7	POLH	intronic	NA
MB_Group4_T1--6	chr6:43578584	G	A	25	0.160	21	39.810	1.940	4	37.000	1.633	21	4	POLH	intronic	NA
MB_Group4_T1--GL	chr6:43578584	G	NA	48	0	48	38.479	5.153	0	0	0	44	0	POLH	intronic	NA
MB_Group4_T1--1	chr6:43618392	T	C	33	0.333	22	38.455	2.521	11	34.182	6.080	22	9	RSPH9	intronic	NA
MB_Group4_T1--2	chr6:43618392	T	C	39	0.231	30	36.800	3.718	9	36.778	0.667	29	9	RSPH9	intronic	NA
MB_Group4_T1--3	chr6:43618392	T	C	108	0.037	104	37.808	3.147	4	35.500	1.000	102	4	RSPH9	intronic	NA
MB_Group4_T1--4	chr6:43618392	T	C	24	0.292	17	36.529	2.695	7	36.429	0.976	16	7	RSPH9	intronic	NA
MB_Group4_T1--5	chr6:43618392	T	C	102	0.127	89	36.393	5.571	13	36.923	0.641	83	13	RSPH9	intronic	NA
MB_Group4_T1--6	chr6:43618392	T	C	19	0.211	15	36.533	4.502	4	36.000	2.000	14	4	RSPH9	intronic	NA
MB_Group4_T1--GL	chr6:43618392	T	NA	42	0	42	37.190	5.558	0	0	0	40	0	RSPH9	intronic	NA
MB_Group4_T1--1	chr6:5000689	A	T	44	0.205	35	38.114	2.398	9	35.222	3.632	34	8	RPP40	intronic	NA
MB_Group4_T1--2	chr6:5000689	A	T	28	0.250	21	38.905	2.468	7	36.714	0.756	21	7	RPP40	intronic	NA
MB_Group4_T1--3	chr6:5000689	A	T	120	0.025	117	37.427	3.689	3	37.000	0.000	112	3	RPP40	intronic	NA
MB_Group4_T1--4	chr6:5000689	A	T	19	0.158	16	38.938	1.948	3	37.000	0.000	16	3	RPP40	intronic	NA
MB_Group4_T1--5	chr6:5000689	A	T	92	0.120	81	36.593	4.785	11	36.000	1.612	75	11	RPP40	intronic	NA
MB_Group4_T1--6	chr6:5000689	A	NA	17	0	17	35.706	5.753	0	0	0	14	0	RPP40	intronic	NA
MB_Group4_T1--GL	chr6:5000689	A	NA	62	0	62	38.532	2.659	0	0	0	61	0	RPP40	intronic	NA
MB_Group4_T1--1	chr6:52357674	A	NA	10	0	10	39.400	1.776	0	0	0	10	0	EFHC1	UTR3	NA
MB_Group4_T1--2	chr6:52357674	A	C	17	0.059	16	39.438	2.159	1	37.000	0.000	16	1	EFHC1	UTR3	NA
MB_Group4_T1--3	chr6:52357674	A	C	42	0.024	41	38.195	3.108	1	34.000	0.000	40	1	EFHC1	UTR3	NA
MB_Group4_T1--4	chr6:52357674	A	C	14	0.071	13	36.692	4.922	1	35.000	0.000	12	1	EFHC1	UTR3	NA
MB_Group4_T1--5	chr6:52357674	A	C	11	0.273	8	36.250	6.431	3	33.333	6.351	7	2	EFHC1	UTR3	NA
MB_Group4_T1--6	chr6:52357674	A	C	15	0.067	14	39.429	1.697	1	34.000	0.000	14	1	EFHC1	UTR3	NA
MB_Group4_T1--GL	chr6:52357674	A	NA	37	0	37	37.432	5.805	0	0	0	35	0	EFHC1	UTR3	NA
MB_Group4_T1--1	chr6:56376091	C	T	39	0.103	35	36.457	4.686	4	36.500	0.577	33	4	DST	exonic	synonymous_SNV
MB_Group4_T1--2	chr6:56376091	C	NA	40	0	40	37.450	3.046	0	0	0	40	0	DST	exonic	synonymous_SNV
MB_Group4_T1--3	chr6:56376091	C	NA	79	0	79	36.810	3.000	0	0	0	78	0	DST	exonic	synonymous_SNV
MB_Group4_T1--4	chr6:56376091	C	NA	36	0	36	36.667	3.935	0	0	0	35	0	DST	exonic	synonymous_SNV
MB_Group4_T1--5	chr6:56376091	C	T	26	0.192	21	36.000	3.661	5	36.200	3.194	20	5	DST	exonic	synonymous_SNV
MB_Group4_T1--6	chr6:56376091	C	T	23	0.130	20	37.050	3.000	3	39.667	2.309	20	3	DST	exonic	synonymous_SNV
MB_Group4_T1--GL	chr6:56376091	C	NA	138	0	136	36.309	3.323	0	0	0	132	0	DST	exonic	synonymous_SNV
MB_Group4_T1--1	chr6:70992731	C	NA	52	0	52	35.346	6.395	0	0	0	44	0	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr6:70992731	C	NA	44	0	44	35.068	8.273	0	0	0	37	0	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr6:70992731	C	G	198	0.005	197	37.157	5.718	1	41.000	0.000	181	1	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr6:70992731	C	NA	35	0	35	35.429	7.126	0	0	0	28	0	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr6:70992731	C	NA	128	0	128	36.727	6.223	0	0	0	116	0	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr6:70992731	C	G	29	0.172	24	36.750	6.408	5	37.000	5.831	22	4	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr6:70992731	C	NA	114	0	114	36.140	6.709	0	0	0	98	0	COL9A1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr6:88210590	C	T	22	0.045	21	38.524	2.839	1	37.000	0.000	21	1	SLC35A1	intronic	NA
MB_Group4_T1--2	chr6:88210590	C	NA	14	0	14	37.143	3.009	0	0	0	14	0	SLC35A1	intronic	NA
MB_Group4_T1--3	chr6:88210590	C	T	53	0.057	50	36.240	5.286	3	35.667	1.155	48	3	SLC35A1	intronic	NA
MB_Group4_T1--4	chr6:88210590	C	NA	11	0	11	36.000	3.521	0	0	0	10	0	SLC35A1	intronic	NA
MB_Group4_T1--5	chr6:88210590	C	T	47	0.170	39	36.667	3.335	8	36.500	0.926	38	8	SLC35A1	intronic	NA
MB_Group4_T1--6	chr6:88210590	C	NA	13	0	13	36.154	5.460	0	0	0	12	0	SLC35A1	intronic	NA
MB_Group4_T1--GL	chr6:88210590	C	NA	47	0	47	37.234	3.478	0	0	0	46	0	SLC35A1	intronic	NA
MB_Group4_T1--1	chr7:100608268	C	NA	33	0	33	34.697	5.520	0	0	0	30	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--2	chr7:100608268	C	NA	23	0	23	36.087	3.895	0	0	0	21	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--3	chr7:100608268	C	T	170	0.165	141	36.631	3.754	28	35.536	3.626	138	27	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--4	chr7:100608268	C	T	11	0.273	8	36.750	3.770	3	33.333	2.887	8	3	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--5	chr7:100608268	C	T	114	0.193	92	36.315	4.516	22	35.000	6.532	85	20	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--6	chr7:100608268	C	NA	21	0	21	36.381	4.056	0	0	0	20	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--GL	chr7:100608268	C	NA	51	0	51	36.784	3.009	0	0	0	51	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_Group4_T1--1	chr7:103202424	A	NA	43	0	41	34.854	4.228	0	0	0	39	0	RELN	intronic	NA
MB_Group4_T1--2	chr7:103202424	A	NA	47	0	44	35.909	4.170	0	0	0	41	0	RELN	intronic	NA
MB_Group4_T1--3	chr7:103202424	A	NA	71	0	70	34.743	4.373	0	0	0	66	0	RELN	intronic	NA
MB_Group4_T1--4	chr7:103202424	A	NA	52	0	47	35.362	6.809	0	0	0	45	0	RELN	intronic	NA
MB_Group4_T1--5	chr7:103202424	A	C	25	0.400	15	35.933	3.826	10	34.100	7.264	14	9	RELN	intronic	NA
MB_Group4_T1--6	chr7:103202424	A	C	17	0.118	15	33.667	6.608	2	38.000	1.414	14	2	RELN	intronic	NA
MB_Group4_T1--GL	chr7:103202424	A	NA	118	0	112	35.036	5.480	0	0	0	105	0	RELN	intronic	NA
MB_Group4_T1--1	chr7:1132236	C	NA	30	0	30	34.933	4.495	0	0	0	28	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:1132236	C	NA	23	0	23	34.652	4.396	0	0	0	20	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:1132236	C	NA	115	0	115	35.461	4.862	0	0	0	102	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:1132236	C	A	13	0.231	10	31.500	6.241	3	33.333	5.508	7	2	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:1132236	C	NA	66	0	66	34.318	6.707	0	0	0	55	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:1132236	C	NA	15	0	15	31.133	9.149	0	0	0	10	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:1132236	C	NA	34	0	34	35.088	4.461	0	0	0	31	0	GPER1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:122321287	T	C	33	0.061	31	38.032	3.911	2	36.000	1.414	29	2	CADPS2	intronic	NA
MB_Group4_T1--2	chr7:122321287	T	C	31	0.065	29	38.862	3.346	2	39.000	2.828	28	2	CADPS2	intronic	NA
MB_Group4_T1--3	chr7:122321287	T	C	146	0.027	141	38.277	4.495	4	36.500	1.000	136	4	CADPS2	intronic	NA
MB_Group4_T1--4	chr7:122321287	T	NA	24	0	24	38.458	2.377	0	0	0	24	0	CADPS2	intronic	NA
MB_Group4_T1--5	chr7:122321287	T	C	50	0.240	38	38.763	3.191	12	34.667	6.125	36	10	CADPS2	intronic	NA
MB_Group4_T1--6	chr7:122321287	T	C	18	0.111	16	37.875	4.334	2	35.500	2.121	15	2	CADPS2	intronic	NA
MB_Group4_T1--GL	chr7:122321287	T	NA	57	0	57	38.930	3.798	0	0	0	55	0	CADPS2	intronic	NA
MB_Group4_T1--1	chr7:122321288	G	T	33	0.061	31	37.613	5.264	2	36.000	1.414	30	2	CADPS2	intronic	NA
MB_Group4_T1--2	chr7:122321288	G	T	32	0.031	30	37.833	4.496	1	37.000	0.000	29	1	CADPS2	intronic	NA
MB_Group4_T1--3	chr7:122321288	G	T	150	0.020	145	37.207	4.734	3	37.000	0.000	136	3	CADPS2	intronic	NA
MB_Group4_T1--4	chr7:122321288	G	NA	24	0	24	38.083	2.620	0	0	0	23	0	CADPS2	intronic	NA
MB_Group4_T1--5	chr7:122321288	G	T	51	0.196	39	37.872	3.412	10	36.000	3.055	38	10	CADPS2	intronic	NA
MB_Group4_T1--6	chr7:122321288	G	T	18	0.111	16	36.438	7.966	2	37.000	0.000	15	2	CADPS2	intronic	NA
MB_Group4_T1--GL	chr7:122321288	G	NA	57	0	57	37.351	6.281	0	0	0	54	0	CADPS2	intronic	NA
MB_Group4_T1--1	chr7:12409604	A	NA	51	0	51	36.176	6.095	0	0	0	46	0	VWDE	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:12409604	A	NA	49	0	49	37.000	3.559	0	0	0	48	0	VWDE	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:12409604	A	T	118	0.127	103	36.456	4.024	15	38.333	3.331	100	15	VWDE	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:12409604	A	NA	42	0	42	36.048	3.170	0	0	0	41	0	VWDE	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:12409604	A	NA	21	0	21	38.571	2.803	0	0	0	21	0	VWDE	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:12409604	A	T	34	0.029	33	34.848	5.702	1	35.000	0.000	26	1	VWDE	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:12409604	A	NA	198	0	198	37.061	3.907	0	0	0	194	0	VWDE	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:128293493	C	G	37	0.189	30	35.533	3.550	7	37.000	0.000	29	7	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--2	chr7:128293493	C	G	33	0.273	24	36.500	3.695	9	34.667	3.708	23	8	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--3	chr7:128293493	C	G	145	0.034	140	34.279	5.628	5	33.600	7.603	125	4	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--4	chr7:128293493	C	G	16	0.188	13	37.077	3.546	3	37.000	0.000	13	3	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--5	chr7:128293493	C	G	156	0.205	124	34.702	5.262	32	36.688	1.230	110	32	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--6	chr7:128293493	C	NA	14	0	14	34.500	3.737	0	0	0	13	0	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--GL	chr7:128293493	C	NA	46	0	46	35.761	3.157	0	0	0	46	0	LINC01000	ncRNA_exonic	NA
MB_Group4_T1--1	chr7:128483623	G	A	83	0.205	66	35.318	4.092	17	36.765	5.652	62	16	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:128483623	G	NA	61	0	61	35.377	3.689	0	0	0	58	0	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:128483623	G	A	635	0.011	628	35.882	4.514	7	39.571	2.507	594	7	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:128483623	G	NA	36	0	36	36.972	3.291	0	0	0	36	0	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:128483623	G	NA	493	0	492	35.720	5.005	0	0	0	461	0	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:128483623	G	NA	55	0	55	37.127	4.000	0	0	0	53	0	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:128483623	G	NA	154	0	154	35.786	4.706	0	0	0	145	0	FLNC	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:138601847	G	A	11	0.091	10	37.000	3.091	1	39.000	0.000	10	1	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:138601847	G	A	17	0.059	16	35.125	7.482	1	35.000	0.000	15	1	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:138601847	G	A	82	0.024	80	34.987	5.806	2	37.000	0.000	71	2	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:138601847	G	NA	13	0	13	35.231	4.952	0	0	0	12	0	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:138601847	G	A	64	0.219	50	35.320	6.535	14	35.857	1.292	42	14	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:138601847	G	NA	11	0	11	30.909	9.235	0	0	0	7	0	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:138601847	G	NA	33	0	33	35.788	4.456	0	0	0	31	0	KIAA1549	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:143807231	C	T	42	0.167	35	37.229	3.582	7	35.714	1.113	34	7	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:143807231	C	T	36	0.167	30	37.933	2.572	6	37.667	1.633	30	6	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:143807231	C	T	104	0.029	101	36.644	4.034	3	35.333	2.887	98	3	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:143807231	C	T	48	0.125	42	36.905	4.107	6	37.000	1.265	40	6	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:143807231	C	T	26	0.038	25	37.280	3.385	1	37.000	0.000	25	1	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:143807231	C	T	24	0.208	19	38.474	2.653	5	36.600	0.894	19	5	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:143807231	C	NA	124	0	122	35.975	4.050	0	0	0	117	0	OR2A2	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:143816208	C	G	21	0.190	17	36.765	5.178	4	38.000	2.582	16	4	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--2	chr7:143816208	C	G	25	0.040	24	36.333	3.886	1	37.000	0.000	23	1	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--3	chr7:143816208	C	G	88	0.034	85	36.941	3.926	3	37.000	0.000	81	3	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--4	chr7:143816208	C	NA	12	0	12	34.917	4.621	0	0	0	10	0	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--5	chr7:143816208	C	G	33	0.182	27	37.111	2.607	6	37.000	0.000	27	6	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--6	chr7:143816208	C	G	16	0.062	15	35.600	3.795	1	37.000	0.000	15	1	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--GL	chr7:143816208	C	NA	41	0	41	36.122	5.483	0	0	0	39	0	OR2A2(dist=8576),OR2A14(dist=9998)	intergenic	NA
MB_Group4_T1--1	chr7:143816210	C	G	22	0.182	18	37.222	5.208	4	37.000	2.160	17	4	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--2	chr7:143816210	C	G	24	0.042	23	38.304	2.738	1	37.000	0.000	23	1	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--3	chr7:143816210	C	G	86	0.035	83	37.554	3.472	3	35.000	3.464	82	3	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--4	chr7:143816210	C	NA	11	0	11	38.364	2.767	0	0	0	11	0	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--5	chr7:143816210	C	G	33	0.182	27	37.593	2.650	6	36.500	1.225	27	6	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--6	chr7:143816210	C	G	15	0.067	14	36.714	4.084	1	37.000	0.000	14	1	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--GL	chr7:143816210	C	NA	40	0	40	37.000	3.823	0	0	0	38	0	OR2A2(dist=8578),OR2A14(dist=9996)	intergenic	NA
MB_Group4_T1--1	chr7:143826530	G	A	52	0.173	43	35.814	3.881	9	36.000	2.345	41	9	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:143826530	G	A	52	0.173	43	37.512	3.439	9	34.667	4.123	41	8	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:143826530	G	A	156	0.064	146	36.938	3.851	10	35.900	2.234	141	10	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:143826530	G	A	35	0.171	29	35.276	6.290	6	34.667	1.366	27	6	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:143826530	G	A	54	0.111	48	36.375	3.824	6	35.500	2.345	46	6	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:143826530	G	A	25	0.160	21	37.476	2.462	4	34.250	2.986	21	4	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:143826530	G	NA	117	0	117	37.410	2.841	0	0	0	117	0	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:143826602	A	G	45	0.156	38	35.816	3.408	7	33.857	6.619	37	6	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:143826602	A	G	64	0.125	56	36.464	3.110	8	36.250	2.121	55	8	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:143826602	A	G	149	0.027	145	37.124	4.560	4	38.000	2.000	140	4	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:143826602	A	G	36	0.083	33	35.364	5.787	3	34.000	5.196	32	2	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:143826602	A	G	61	0.082	56	36.839	3.302	5	34.600	3.286	54	5	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:143826602	A	G	32	0.062	30	36.500	3.452	2	37.000	0.000	30	2	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:143826602	A	NA	90	0	90	37.422	3.094	0	0	0	89	0	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:143826975	C	T	46	0.239	35	34.771	3.789	11	36.455	0.934	32	11	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:143826975	C	T	50	0.180	41	34.463	4.348	9	37.000	0.000	37	9	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:143826975	C	T	177	0.136	153	35.320	3.320	24	36.292	1.944	147	23	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:143826975	C	T	47	0.234	36	35.056	3.756	11	37.000	0.000	33	11	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:143826975	C	T	59	0.169	49	35.327	3.520	10	36.800	0.632	47	10	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:143826975	C	T	35	0.114	31	35.516	2.706	4	36.500	1.000	30	4	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:143826975	C	NA	110	0	110	35.227	4.183	0	0	0	104	0	OR2A14	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:148513771	C	NA	29	0	29	37.103	4.624	0	0	0	27	0	EZH2	intronic	NA
MB_Group4_T1--2	chr7:148513771	C	NA	27	0	27	37.593	3.308	0	0	0	26	0	EZH2	intronic	NA
MB_Group4_T1--3	chr7:148513771	C	A	65	0.015	64	37.875	3.539	1	41.000	0.000	63	1	EZH2	intronic	NA
MB_Group4_T1--4	chr7:148513771	C	NA	12	0	12	38.833	2.406	0	0	0	12	0	EZH2	intronic	NA
MB_Group4_T1--5	chr7:148513771	C	NA	15	0	15	37.533	2.900	0	0	0	15	0	EZH2	intronic	NA
MB_Group4_T1--6	chr7:148513771	C	A	11	0.273	8	37.000	3.207	3	36.000	1.732	8	3	EZH2	intronic	NA
MB_Group4_T1--GL	chr7:148513771	C	NA	68	0	68	37.603	3.629	0	0	0	67	0	EZH2	intronic	NA
MB_Group4_T1--1	chr7:148718323	T	C	17	0.059	16	38.625	3.008	1	37.000	0.000	16	1	PDIA4	intronic	NA
MB_Group4_T1--2	chr7:148718323	T	C	15	0.067	14	37.000	2.320	1	37.000	0.000	14	1	PDIA4	intronic	NA
MB_Group4_T1--3	chr7:148718323	T	C	74	0.108	66	37.212	4.498	8	37.500	0.926	63	8	PDIA4	intronic	NA
MB_Group4_T1--4	chr7:148718323	T	NA	11	0	11	37.364	3.075	0	0	0	11	0	PDIA4	intronic	NA
MB_Group4_T1--5	chr7:148718323	T	C	65	0.231	49	35.796	5.236	15	34.400	5.138	45	14	PDIA4	intronic	NA
MB_Group4_T1--6	chr7:148718323	T	NA	12	0	12	37.000	2.174	0	0	0	12	0	PDIA4	intronic	NA
MB_Group4_T1--GL	chr7:148718323	T	NA	42	0	42	37.286	3.897	0	0	0	41	0	PDIA4	intronic	NA
MB_Group4_T1--1	chr7:148718325	G	A	18	0.056	17	37.882	4.167	1	37.000	0.000	16	1	PDIA4	intronic	NA
MB_Group4_T1--2	chr7:148718325	G	A	15	0.067	14	37.929	1.730	1	37.000	0.000	14	1	PDIA4	intronic	NA
MB_Group4_T1--3	chr7:148718325	G	A	75	0.093	68	37.235	3.902	7	37.000	0.000	66	7	PDIA4	intronic	NA
MB_Group4_T1--4	chr7:148718325	G	NA	11	0	11	38.545	1.809	0	0	0	11	0	PDIA4	intronic	NA
MB_Group4_T1--5	chr7:148718325	G	A	64	0.188	52	36.250	4.874	12	34.500	3.754	49	10	PDIA4	intronic	NA
MB_Group4_T1--6	chr7:148718325	G	NA	12	0	12	35.667	5.483	0	0	0	11	0	PDIA4	intronic	NA
MB_Group4_T1--GL	chr7:148718325	G	NA	43	0	43	37.628	3.215	0	0	0	42	0	PDIA4	intronic	NA
MB_Group4_T1--1	chr7:149530929	T	A	23	0.174	19	36.368	5.718	4	37.000	3.651	18	4	SSPO	UTR3	NA
MB_Group4_T1--2	chr7:149530929	T	NA	38	0	38	37.605	4.259	0	0	0	36	0	SSPO	UTR3	NA
MB_Group4_T1--3	chr7:149530929	T	NA	155	0	155	36.987	4.801	0	0	0	151	0	SSPO	UTR3	NA
MB_Group4_T1--4	chr7:149530929	T	NA	21	0	21	37.333	4.029	0	0	0	20	0	SSPO	UTR3	NA
MB_Group4_T1--5	chr7:149530929	T	NA	47	0	47	37.553	2.827	0	0	0	47	0	SSPO	UTR3	NA
MB_Group4_T1--6	chr7:149530929	T	NA	23	0	23	38.783	2.891	0	0	0	23	0	SSPO	UTR3	NA
MB_Group4_T1--GL	chr7:149530929	T	NA	87	0	87	37.885	3.251	0	0	0	87	0	SSPO	UTR3	NA
MB_Group4_T1--1	chr7:150383986	C	NA	15	0	15	36.733	3.390	0	0	0	15	0	GIMAP2	intronic	NA
MB_Group4_T1--2	chr7:150383986	C	NA	15	0	15	38.133	3.044	0	0	0	15	0	GIMAP2	intronic	NA
MB_Group4_T1--3	chr7:150383986	C	T	32	0.094	29	37.034	3.679	3	37.000	0.000	27	3	GIMAP2	intronic	NA
MB_Group4_T1--4	chr7:150383986	C	T	17	0.059	15	35.600	3.355	1	34.000	0.000	14	1	GIMAP2	intronic	NA
MB_Group4_T1--5	chr7:150383986	C	T	35	0.171	29	36.345	3.638	6	35.500	2.811	27	6	GIMAP2	intronic	NA
MB_Group4_T1--6	chr7:150383986	C	NA	11	0	11	37.455	2.734	0	0	0	11	0	GIMAP2	intronic	NA
MB_Group4_T1--GL	chr7:150383986	C	NA	41	0	41	34.561	6.205	0	0	0	37	0	GIMAP2	intronic	NA
MB_Group4_T1--1	chr7:150383989	A	G	16	0.062	15	36.667	3.266	1	37.000	0.000	15	1	GIMAP2	intronic	NA
MB_Group4_T1--2	chr7:150383989	A	NA	15	0	15	36.933	4.818	0	0	0	14	0	GIMAP2	intronic	NA
MB_Group4_T1--3	chr7:150383989	A	G	31	0.097	28	36.143	3.352	3	33.000	1.732	27	3	GIMAP2	intronic	NA
MB_Group4_T1--4	chr7:150383989	A	G	17	0.059	16	33.562	5.440	1	37.000	0.000	15	1	GIMAP2	intronic	NA
MB_Group4_T1--5	chr7:150383989	A	G	36	0.194	29	34.103	6.651	7	31.571	8.121	26	5	GIMAP2	intronic	NA
MB_Group4_T1--6	chr7:150383989	A	G	11	0.091	10	38.300	2.058	1	37.000	0.000	10	1	GIMAP2	intronic	NA
MB_Group4_T1--GL	chr7:150383989	A	NA	42	0	42	34.952	3.767	0	0	0	41	0	GIMAP2	intronic	NA
MB_Group4_T1--1	chr7:150439350	T	C	31	0.161	26	30.577	7.809	5	35.600	2.191	19	5	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:150439350	T	C	35	0.229	25	29.960	7.260	8	34.750	3.240	17	7	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:150439350	T	C	102	0.059	95	32.579	5.987	6	35.833	2.041	78	6	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:150439350	T	C	20	0.100	18	32.778	5.857	2	37.000	0.000	15	2	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:150439350	T	C	57	0.158	47	32.000	6.051	9	34.667	7.000	38	8	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:150439350	T	C	22	0.091	20	32.500	5.186	2	37.000	0.000	15	2	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:150439350	T	NA	62	0	62	33.145	4.479	0	0	0	54	0	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:150439351	G	A	31	0.161	26	33.385	5.330	5	36.600	0.894	23	5	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:150439351	G	A	35	0.286	25	29.040	9.749	10	29.600	11.730	18	7	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:150439351	G	A	102	0.059	96	33.552	6.314	6	36.333	1.033	84	6	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:150439351	G	A	20	0.100	18	35.056	3.208	2	36.000	1.414	17	2	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:150439351	G	A	57	0.158	48	34.396	5.584	9	36.556	1.333	44	9	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:150439351	G	A	22	0.091	20	34.700	4.131	2	37.000	0.000	18	2	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:150439351	G	NA	63	0	63	34.571	3.291	0	0	0	58	0	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:150439632	A	G	49	0.163	41	36.463	3.702	8	35.500	1.690	39	8	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:150439632	A	G	56	0.125	49	37.306	4.788	7	35.000	2.517	46	7	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:150439632	A	G	167	0.072	155	37.503	3.317	12	36.167	2.290	153	12	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:150439632	A	G	36	0.111	31	34.871	6.495	4	36.500	1.000	27	4	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:150439632	A	G	117	0.077	108	36.074	5.693	9	36.556	1.333	102	9	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:150439632	A	G	30	0.067	28	36.607	5.021	2	37.500	0.707	26	2	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:150439632	A	NA	69	0	69	36.449	4.196	0	0	0	65	0	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:150439688	A	G	72	0.083	66	36.409	4.530	6	37.000	0.000	65	6	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:150439688	A	G	87	0.115	77	35.636	4.404	10	37.400	1.265	71	10	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:150439688	A	G	218	0.041	209	35.837	4.361	9	33.889	7.373	197	8	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:150439688	A	G	33	0.152	28	35.786	3.315	5	37.000	0.000	27	5	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:150439688	A	G	142	0.070	132	35.886	4.534	10	36.600	2.271	123	10	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:150439688	A	G	39	0.128	34	35.324	3.641	5	37.000	0.000	31	5	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:150439688	A	NA	82	0	82	35.549	3.742	0	0	0	75	0	GIMAP1-GIMAP5,GIMAP5	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:150439900	T	C	55	0.182	45	37.267	3.353	10	36.600	0.843	44	10	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:150439900	T	C	62	0.097	56	37.107	4.044	6	32.167	7.333	53	4	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:150439900	T	C	150	0.053	141	36.546	5.664	8	36.750	0.707	130	8	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:150439900	T	C	44	0.136	38	35.737	6.408	6	35.333	2.338	34	6	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:150439900	T	C	120	0.125	105	36.905	4.152	15	36.733	1.033	101	15	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:150439900	T	C	51	0.059	48	36.896	3.799	3	36.333	1.155	44	3	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:150439900	T	NA	112	0	112	37.402	3.555	0	0	0	109	0	GIMAP1-GIMAP5,GIMAP5	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:21721001	T	C	15	0.133	13	37.077	2.929	2	37.000	0.000	13	2	DNAH11	intronic	NA
MB_Group4_T1--2	chr7:21721001	T	C	23	0.217	17	34.882	5.183	5	35.600	2.191	14	5	DNAH11	intronic	NA
MB_Group4_T1--3	chr7:21721001	T	C	50	0.140	43	36.349	3.747	7	34.857	2.610	41	7	DNAH11	intronic	NA
MB_Group4_T1--4	chr7:21721001	T	NA	11	0	11	30.455	9.070	0	0	0	8	0	DNAH11	intronic	NA
MB_Group4_T1--5	chr7:21721001	T	C	40	0.325	26	37.192	2.980	13	36.538	0.877	26	13	DNAH11	intronic	NA
MB_Group4_T1--6	chr7:21721001	T	C	19	0.158	16	33.812	5.636	3	36.667	0.577	13	3	DNAH11	intronic	NA
MB_Group4_T1--GL	chr7:21721001	T	NA	54	0	54	37.611	3.579	0	0	0	53	0	DNAH11	intronic	NA
MB_Group4_T1--1	chr7:23180131	G	A	21	0.143	18	35.000	3.199	3	36.333	1.155	18	3	KLHL7	intronic	NA
MB_Group4_T1--2	chr7:23180131	G	A	10	0.200	8	37.375	2.326	2	37.000	0.000	8	2	KLHL7	intronic	NA
MB_Group4_T1--3	chr7:23180131	G	A	57	0.088	52	35.615	3.810	5	37.000	0.000	49	5	KLHL7	intronic	NA
MB_Group4_T1--4	chr7:23180131	G	A	14	0.071	13	34.462	3.099	1	37.000	0.000	12	1	KLHL7	intronic	NA
MB_Group4_T1--5	chr7:23180131	G	A	74	0.162	60	33.383	6.977	12	36.583	1.443	53	12	KLHL7	intronic	NA
MB_Group4_T1--6	chr7:23180131	G	A	11	0.091	10	34.200	6.861	1	37.000	0.000	9	1	KLHL7	intronic	NA
MB_Group4_T1--GL	chr7:23180131	G	NA	60	0	60	34.100	5.075	0	0	0	53	0	KLHL7	intronic	NA
MB_Group4_T1--1	chr7:35187287	G	A	28	0.107	25	37.720	2.807	3	36.333	3.055	25	3	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--2	chr7:35187287	G	A	33	0.061	31	36.968	6.085	2	37.000	0.000	28	2	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--3	chr7:35187287	G	A	97	0.175	80	38.163	3.224	17	36.765	1.562	79	17	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--4	chr7:35187287	G	A	22	0.045	21	36.619	7.813	1	37.000	0.000	19	1	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--5	chr7:35187287	G	A	75	0.320	50	37.800	4.041	24	36.625	0.770	47	24	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--6	chr7:35187287	G	A	17	0.118	15	39.067	1.907	2	36.000	1.414	15	2	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--GL	chr7:35187287	G	NA	89	0	88	36.886	5.505	0	0	0	84	0	DPY19L2P1	ncRNA_intronic	NA
MB_Group4_T1--1	chr7:39832631	G	A	80	0.075	73	36.521	3.618	6	36.667	0.816	71	6	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--2	chr7:39832631	G	A	70	0.186	56	36.393	3.576	13	35.846	2.304	55	12	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--3	chr7:39832631	G	A	251	0.032	243	36.342	3.775	8	37.000	0.000	232	8	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--4	chr7:39832631	G	A	43	0.116	38	36.895	3.652	5	37.200	0.447	37	5	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--5	chr7:39832631	G	A	360	0.083	329	36.131	4.355	30	36.433	1.006	317	30	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--6	chr7:39832631	G	A	44	0.136	38	36.500	3.607	6	35.667	3.327	37	6	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--GL	chr7:39832631	G	NA	108	0	108	37.065	3.662	0	0	0	105	0	LINC00265	ncRNA_exonic	NA
MB_Group4_T1--1	chr7:44099046	C	NA	23	0	23	35.652	6.860	0	0	0	22	0	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:44099046	C	NA	15	0	15	34.867	5.986	0	0	0	14	0	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:44099046	C	A	109	0.009	108	36.593	3.965	1	41.000	0.000	105	1	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:44099046	C	A	14	0.214	11	36.545	4.275	3	35.000	4.000	10	3	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:44099046	C	A	80	0.013	79	35.873	5.823	1	35.000	0.000	74	1	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:44099046	C	NA	24	0	24	36.917	3.309	0	0	0	23	0	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:44099046	C	NA	47	0	47	36.383	4.857	0	0	0	46	0	DBNL	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:45851252	A	T	30	0.033	29	34.931	4.551	1	35.000	0.000	26	1	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--2	chr7:45851252	A	T	23	0.261	17	35.471	3.555	6	36.000	1.095	15	6	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--3	chr7:45851252	A	T	67	0.015	66	35.394	4.030	1	35.000	0.000	62	1	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--4	chr7:45851252	A	T	11	0.091	10	34.900	3.247	1	35.000	0.000	9	1	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--5	chr7:45851252	A	NA	57	0	57	34.737	5.433	0	0	0	53	0	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--6	chr7:45851252	A	T	15	0.067	14	36.143	4.452	1	37.000	0.000	13	1	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--GL	chr7:45851252	A	NA	40	0	40	35.700	3.275	0	0	0	40	0	SEPT7P2(dist=42635),IGFBP1(dist=76707)	intergenic	NA
MB_Group4_T1--1	chr7:50687038	T	G	35	0.200	28	38.679	2.803	7	38.571	2.070	28	7	GRB10	intronic	NA
MB_Group4_T1--2	chr7:50687038	T	G	29	0.034	28	38.179	2.842	1	39.000	0.000	28	1	GRB10	intronic	NA
MB_Group4_T1--3	chr7:50687038	T	G	86	0.023	84	37.786	4.407	2	41.000	0.000	81	2	GRB10	intronic	NA
MB_Group4_T1--4	chr7:50687038	T	NA	19	0	19	37.474	2.010	0	0	0	19	0	GRB10	intronic	NA
MB_Group4_T1--5	chr7:50687038	T	NA	33	0	33	35.697	5.469	0	0	0	30	0	GRB10	intronic	NA
MB_Group4_T1--6	chr7:50687038	T	NA	21	0	21	36.857	6.981	0	0	0	20	0	GRB10	intronic	NA
MB_Group4_T1--GL	chr7:50687038	T	NA	81	0	81	37.309	4.119	0	0	0	78	0	GRB10	intronic	NA
MB_Group4_T1--1	chr7:55810274	G	C	49	0.122	43	35.302	3.082	6	36.333	1.033	42	6	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--2	chr7:55810274	G	C	37	0.162	31	36.194	2.562	6	36.333	1.033	31	6	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--3	chr7:55810274	G	C	159	0.025	155	35.852	3.411	4	26.250	13.696	149	2	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--4	chr7:55810274	G	C	15	0.067	14	35.500	3.436	1	37.000	0.000	14	1	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--5	chr7:55810274	G	C	240	0.037	230	35.665	3.857	9	37.000	0.000	222	9	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--6	chr7:55810274	G	NA	21	0	21	36.095	2.897	0	0	0	21	0	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--GL	chr7:55810274	G	NA	80	0	80	36.050	2.989	0	0	0	79	0	FKBP9L(dist=38014),SEPT14(dist=50963)	intergenic	NA
MB_Group4_T1--1	chr7:55810297	G	T	67	0.194	54	36.185	3.676	13	36.077	1.553	52	13	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--2	chr7:55810297	G	T	44	0.182	36	37.361	2.779	8	36.500	0.926	36	8	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--3	chr7:55810297	G	T	164	0.018	161	35.839	5.627	3	36.333	1.155	147	3	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--4	chr7:55810297	G	T	24	0.083	22	36.955	4.603	2	37.000	0.000	20	2	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--5	chr7:55810297	G	T	279	0.075	258	36.547	4.153	21	35.524	3.530	248	20	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--6	chr7:55810297	G	T	27	0.148	23	36.913	5.256	4	36.500	1.000	21	4	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--GL	chr7:55810297	G	NA	95	0	95	37.147	4.034	0	0	0	91	0	FKBP9L(dist=38037),SEPT14(dist=50940)	intergenic	NA
MB_Group4_T1--1	chr7:55810700	G	C	35	0.171	29	35.793	4.288	6	31.500	4.461	26	5	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--2	chr7:55810700	G	C	35	0.286	25	34.480	6.995	10	33.600	2.503	23	9	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--3	chr7:55810700	G	C	86	0.023	84	36.571	4.468	2	32.500	2.121	80	2	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--4	chr7:55810700	G	C	10	0.200	8	35.500	4.309	2	34.000	0.000	8	2	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--5	chr7:55810700	G	C	108	0.102	97	36.948	4.099	11	33.545	2.252	92	11	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--6	chr7:55810700	G	C	16	0.188	13	36.538	2.904	3	34.000	0.000	13	3	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--GL	chr7:55810700	G	NA	44	0	44	36.682	3.934	0	0	0	42	0	FKBP9L(dist=38440),SEPT14(dist=50537)	intergenic	NA
MB_Group4_T1--1	chr7:55811762	C	T	53	0.038	51	37.118	4.068	2	36.000	1.414	50	2	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--2	chr7:55811762	C	T	52	0.173	43	37.093	3.265	9	36.111	1.054	43	9	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--3	chr7:55811762	C	NA	158	0	158	36.481	4.914	0	0	0	146	0	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--4	chr7:55811762	C	T	27	0.074	25	38.080	2.613	2	34.000	4.243	25	2	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--5	chr7:55811762	C	T	237	0.004	236	36.335	5.280	1	37.000	0.000	215	1	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--6	chr7:55811762	C	NA	31	0	31	36.839	4.132	0	0	0	30	0	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--GL	chr7:55811762	C	NA	93	0	93	37.086	3.273	0	0	0	92	0	FKBP9L(dist=39502),SEPT14(dist=49475)	intergenic	NA
MB_Group4_T1--1	chr7:56442497	C	A	27	0.074	25	34.440	4.528	2	38.500	3.536	23	2	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--2	chr7:56442497	C	NA	36	0	36	36.222	3.382	0	0	0	35	0	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--3	chr7:56442497	C	A	102	0.010	101	34.059	4.425	1	41.000	0.000	88	1	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--4	chr7:56442497	C	A	14	0.214	11	35.273	2.832	3	38.333	3.055	11	3	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--5	chr7:56442497	C	A	131	0.023	128	34.406	5.572	3	38.000	3.000	114	3	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--6	chr7:56442497	C	NA	29	0	29	34.966	2.732	0	0	0	29	0	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--GL	chr7:56442497	C	NA	66	0	66	35.591	2.672	0	0	0	66	0	NUPR1L(dist=258407),LOC650226(dist=48900)	intergenic	NA
MB_Group4_T1--1	chr7:56442530	C	T	21	0.095	19	35.263	5.867	2	36.000	1.414	16	2	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--2	chr7:56442530	C	NA	24	0	24	36.750	3.517	0	0	0	23	0	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--3	chr7:56442530	C	T	81	0.012	79	34.987	5.792	1	37.000	0.000	71	1	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--4	chr7:56442530	C	T	10	0.300	7	33.857	4.451	3	35.667	2.309	5	3	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--5	chr7:56442530	C	T	89	0.067	83	35.337	4.971	6	37.000	0.000	73	6	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--6	chr7:56442530	C	NA	24	0	24	35.833	5.799	0	0	0	22	0	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--GL	chr7:56442530	C	NA	54	0	54	35.093	5.947	0	0	0	46	0	NUPR1L(dist=258440),LOC650226(dist=48867)	intergenic	NA
MB_Group4_T1--1	chr7:6018026	T	C	20	0.100	18	36.056	2.437	2	36.000	1.414	18	2	PMS2	intronic	NA
MB_Group4_T1--2	chr7:6018026	T	C	18	0.056	17	35.235	3.800	1	37.000	0.000	15	1	PMS2	intronic	NA
MB_Group4_T1--3	chr7:6018026	T	C	69	0.043	66	36.500	4.615	3	27.000	17.321	64	2	PMS2	intronic	NA
MB_Group4_T1--4	chr7:6018026	T	NA	13	0	13	35.538	3.230	0	0	0	13	0	PMS2	intronic	NA
MB_Group4_T1--5	chr7:6018026	T	C	98	0.214	77	36.117	3.426	21	36.476	1.250	74	21	PMS2	intronic	NA
MB_Group4_T1--6	chr7:6018026	T	C	13	0.077	12	36.333	3.576	1	37.000	0.000	12	1	PMS2	intronic	NA
MB_Group4_T1--GL	chr7:6018026	T	NA	44	0	44	36.705	2.993	0	0	0	43	0	PMS2	intronic	NA
MB_Group4_T1--1	chr7:6018169	T	A	91	0.308	63	36.556	4.829	28	36.179	3.475	57	27	PMS2	intronic	NA
MB_Group4_T1--2	chr7:6018169	T	A	78	0.244	59	37.000	5.075	19	36.368	1.165	55	19	PMS2	intronic	NA
MB_Group4_T1--3	chr7:6018169	T	A	172	0.134	149	37.040	3.855	23	37.130	1.140	142	23	PMS2	intronic	NA
MB_Group4_T1--4	chr7:6018169	T	A	44	0.250	33	36.424	4.265	11	35.818	3.545	30	10	PMS2	intronic	NA
MB_Group4_T1--5	chr7:6018169	T	A	224	0.237	171	36.368	5.660	53	35.717	5.153	155	50	PMS2	intronic	NA
MB_Group4_T1--6	chr7:6018169	T	A	36	0.250	27	36.889	4.585	9	35.000	6.083	26	8	PMS2	intronic	NA
MB_Group4_T1--GL	chr7:6018169	T	NA	163	0	163	37.012	3.941	0	0	0	155	0	PMS2	intronic	NA
MB_Group4_T1--1	chr7:6018584	A	G	23	0.130	20	37.500	4.007	3	37.000	0.000	19	3	PMS2	intronic	NA
MB_Group4_T1--2	chr7:6018584	A	G	22	0.409	13	38.077	3.013	9	37.222	1.563	13	9	PMS2	intronic	NA
MB_Group4_T1--3	chr7:6018584	A	G	35	0.057	33	37.424	3.250	2	37.000	0.000	32	2	PMS2	intronic	NA
MB_Group4_T1--4	chr7:6018584	A	G	14	0.143	12	36.750	6.676	2	36.000	1.414	11	2	PMS2	intronic	NA
MB_Group4_T1--5	chr7:6018584	A	G	71	0.127	62	37.823	4.287	9	34.778	5.954	60	8	PMS2	intronic	NA
MB_Group4_T1--6	chr7:6018584	A	G	16	0.125	14	38.643	3.128	2	37.000	0.000	14	2	PMS2	intronic	NA
MB_Group4_T1--GL	chr7:6018584	A	NA	38	0	38	36.289	4.787	0	0	0	36	0	PMS2	intronic	NA
MB_Group4_T1--1	chr7:6022836	C	NA	22	0	22	36.364	4.006	0	0	0	21	0	PMS2	intronic	NA
MB_Group4_T1--2	chr7:6022836	C	T	29	0.103	25	37.800	3.291	3	37.667	1.155	25	3	PMS2	intronic	NA
MB_Group4_T1--3	chr7:6022836	C	T	70	0.014	69	36.377	4.994	1	37.000	0.000	65	1	PMS2	intronic	NA
MB_Group4_T1--4	chr7:6022836	C	T	19	0.211	15	36.667	4.419	4	36.500	1.000	14	4	PMS2	intronic	NA
MB_Group4_T1--5	chr7:6022836	C	T	54	0.037	52	36.923	3.935	2	32.500	3.536	49	2	PMS2	intronic	NA
MB_Group4_T1--6	chr7:6022836	C	T	13	0.154	11	32.182	9.569	2	37.000	0.000	8	2	PMS2	intronic	NA
MB_Group4_T1--GL	chr7:6022836	C	NA	38	0	38	38.105	2.597	0	0	0	38	0	PMS2	intronic	NA
MB_Group4_T1--1	chr7:64043371	G	NA	34	0	34	36.588	3.350	0	0	0	33	0	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--2	chr7:64043371	G	NA	36	0	36	36.472	2.667	0	0	0	36	0	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--3	chr7:64043371	G	T	114	0.009	113	35.522	4.516	1	33.000	0.000	105	1	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--4	chr7:64043371	G	T	18	0.222	14	35.571	3.131	4	38.750	1.500	14	4	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--5	chr7:64043371	G	T	137	0.007	136	35.360	4.433	1	34.000	0.000	129	1	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--6	chr7:64043371	G	NA	29	0	29	36.379	3.678	0	0	0	28	0	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--GL	chr7:64043371	G	NA	55	0	55	35.109	4.856	0	0	0	52	0	LOC641746	ncRNA_exonic	NA
MB_Group4_T1--1	chr7:6781103	G	A	19	0.105	17	38.294	2.392	2	37.000	0.000	17	2	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--2	chr7:6781103	G	A	17	0.235	13	37.846	2.794	4	36.500	1.000	13	4	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--3	chr7:6781103	G	A	63	0.048	59	35.898	6.250	3	37.000	0.000	54	3	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--4	chr7:6781103	G	A	12	0.083	11	38.273	2.611	1	37.000	0.000	11	1	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--5	chr7:6781103	G	A	56	0.036	54	37.148	5.479	2	37.000	0.000	52	2	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--6	chr7:6781103	G	A	16	0.250	12	36.917	5.351	4	35.000	1.633	10	4	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--GL	chr7:6781103	G	NA	44	0	44	38.568	2.172	0	0	0	44	0	PMS2CL	ncRNA_intronic	NA
MB_Group4_T1--1	chr7:72755174	T	C	31	0.161	26	34.962	6.762	5	36.600	0.894	23	5	FKBP6	intronic	NA
MB_Group4_T1--2	chr7:72755174	T	C	26	0.115	23	36.478	5.089	3	37.000	0.000	21	3	FKBP6	intronic	NA
MB_Group4_T1--3	chr7:72755174	T	C	142	0.134	123	37.618	4.017	19	36.579	1.071	118	19	FKBP6	intronic	NA
MB_Group4_T1--4	chr7:72755174	T	C	16	0.250	12	36.833	4.108	4	38.000	2.000	11	4	FKBP6	intronic	NA
MB_Group4_T1--5	chr7:72755174	T	C	102	0.275	74	37.122	4.791	28	36.786	0.630	72	28	FKBP6	intronic	NA
MB_Group4_T1--6	chr7:72755174	T	C	19	0.053	18	36.889	4.588	1	37.000	0.000	16	1	FKBP6	intronic	NA
MB_Group4_T1--GL	chr7:72755174	T	NA	82	0	82	37.037	4.893	0	0	0	76	0	FKBP6	intronic	NA
MB_Group4_T1--1	chr7:72755175	G	A	30	0.133	26	33.692	8.322	4	36.500	1.000	22	4	FKBP6	intronic	NA
MB_Group4_T1--2	chr7:72755175	G	A	27	0.111	24	35.417	7.015	3	37.000	0.000	21	3	FKBP6	intronic	NA
MB_Group4_T1--3	chr7:72755175	G	A	140	0.129	122	38.025	2.905	18	36.778	0.647	120	18	FKBP6	intronic	NA
MB_Group4_T1--4	chr7:72755175	G	A	17	0.059	16	37.125	2.964	1	37.000	0.000	16	1	FKBP6	intronic	NA
MB_Group4_T1--5	chr7:72755175	G	A	99	0.222	77	37.117	4.760	22	36.864	0.468	74	22	FKBP6	intronic	NA
MB_Group4_T1--6	chr7:72755175	G	A	19	0.053	18	35.833	5.762	1	37.000	0.000	17	1	FKBP6	intronic	NA
MB_Group4_T1--GL	chr7:72755175	G	NA	81	0	81	36.963	5.144	0	0	0	76	0	FKBP6	intronic	NA
MB_Group4_T1--1	chr7:82544959	T	NA	31	0	31	37.194	5.437	0	0	0	29	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:82544959	T	NA	25	0	25	37.840	2.868	0	0	0	25	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:82544959	T	NA	76	0	76	37.250	3.295	0	0	0	75	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:82544959	T	NA	31	0	31	37.484	2.515	0	0	0	31	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:82544959	T	NA	25	0	25	35.560	8.257	0	0	0	23	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:82544959	T	C	17	0.176	14	38.071	3.050	3	37.667	3.055	14	3	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:82544959	T	NA	87	0	87	37.655	4.080	0	0	0	81	0	PCLO	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:87196409	A	G	24	0.208	19	38.579	3.564	5	39.000	3.464	18	5	ABCB1	intronic	NA
MB_Group4_T1--2	chr7:87196409	A	G	20	0.050	19	37.474	6.059	1	41.000	0.000	18	1	ABCB1	intronic	NA
MB_Group4_T1--3	chr7:87196409	A	G	84	0.060	79	39.456	2.591	5	38.800	1.789	78	5	ABCB1	intronic	NA
MB_Group4_T1--4	chr7:87196409	A	NA	10	0	10	37.500	5.083	0	0	0	9	0	ABCB1	intronic	NA
MB_Group4_T1--5	chr7:87196409	A	NA	17	0	17	37.235	4.956	0	0	0	14	0	ABCB1	intronic	NA
MB_Group4_T1--6	chr7:87196409	A	NA	18	0	18	39.500	2.455	0	0	0	18	0	ABCB1	intronic	NA
MB_Group4_T1--GL	chr7:87196409	A	NA	81	0	81	39.012	2.658	0	0	0	81	0	ABCB1	intronic	NA
MB_Group4_T1--1	chr7:87533852	C	NA	12	0	12	37.000	3.668	0	0	0	12	0	DBF4	intronic	NA
MB_Group4_T1--2	chr7:87533852	C	NA	18	0	18	36.833	3.536	0	0	0	17	0	DBF4	intronic	NA
MB_Group4_T1--3	chr7:87533852	C	T	52	0.077	48	36.833	3.491	4	37.000	0.000	46	4	DBF4	intronic	NA
MB_Group4_T1--4	chr7:87533852	C	T	11	0.182	9	35.444	3.245	2	37.000	0.000	8	2	DBF4	intronic	NA
MB_Group4_T1--5	chr7:87533852	C	T	53	0.226	41	37.293	4.766	12	36.667	0.778	37	12	DBF4	intronic	NA
MB_Group4_T1--6	chr7:87533852	C	T	19	0.053	18	35.833	4.033	1	37.000	0.000	16	1	DBF4	intronic	NA
MB_Group4_T1--GL	chr7:87533852	C	NA	43	0	43	35.814	4.311	0	0	0	38	0	DBF4	intronic	NA
MB_Group4_T1--1	chr7:87533862	C	T	15	0.067	14	35.643	4.940	1	35.000	0.000	13	1	DBF4	intronic	NA
MB_Group4_T1--2	chr7:87533862	C	NA	17	0	17	35.118	5.946	0	0	0	15	0	DBF4	intronic	NA
MB_Group4_T1--3	chr7:87533862	C	T	47	0.064	44	36.523	3.560	3	37.000	0.000	43	3	DBF4	intronic	NA
MB_Group4_T1--4	chr7:87533862	C	NA	12	0	12	34.833	3.857	0	0	0	11	0	DBF4	intronic	NA
MB_Group4_T1--5	chr7:87533862	C	T	49	0.327	33	35.485	6.063	16	36.188	1.682	31	16	DBF4	intronic	NA
MB_Group4_T1--6	chr7:87533862	C	NA	17	0	17	35.647	3.757	0	0	0	17	0	DBF4	intronic	NA
MB_Group4_T1--GL	chr7:87533862	C	NA	43	0	43	35.326	3.365	0	0	0	41	0	DBF4	intronic	NA
MB_Group4_T1--1	chr7:87533864	A	G	15	0.067	14	36.143	3.505	1	37.000	0.000	13	1	DBF4	intronic	NA
MB_Group4_T1--2	chr7:87533864	A	NA	17	0	16	36.375	3.594	0	0	0	15	0	DBF4	intronic	NA
MB_Group4_T1--3	chr7:87533864	A	G	48	0.062	45	36.822	2.987	3	37.000	0.000	44	3	DBF4	intronic	NA
MB_Group4_T1--4	chr7:87533864	A	NA	10	0	10	36.300	2.710	0	0	0	10	0	DBF4	intronic	NA
MB_Group4_T1--5	chr7:87533864	A	G	49	0.367	31	37.161	3.034	18	36.167	1.543	30	18	DBF4	intronic	NA
MB_Group4_T1--6	chr7:87533864	A	NA	16	0	16	36.250	4.235	0	0	0	14	0	DBF4	intronic	NA
MB_Group4_T1--GL	chr7:87533864	A	NA	42	0	42	35.619	3.513	0	0	0	38	0	DBF4	intronic	NA
MB_Group4_T1--1	chr7:87825821	A	NA	45	0	45	37.556	4.099	0	0	0	44	0	ADAM22	UTR3	NA
MB_Group4_T1--2	chr7:87825821	A	NA	35	0	35	37.686	3.428	0	0	0	34	0	ADAM22	UTR3	NA
MB_Group4_T1--3	chr7:87825821	A	NA	89	0	89	37.652	3.237	0	0	0	87	0	ADAM22	UTR3	NA
MB_Group4_T1--4	chr7:87825821	A	NA	28	0	28	36.964	4.615	0	0	0	26	0	ADAM22	UTR3	NA
MB_Group4_T1--5	chr7:87825821	A	G	18	0.167	15	36.867	2.416	3	39.667	1.528	15	3	ADAM22	UTR3	NA
MB_Group4_T1--6	chr7:87825821	A	NA	17	0	17	37.059	4.145	0	0	0	16	0	ADAM22	UTR3	NA
MB_Group4_T1--GL	chr7:87825821	A	NA	77	0	77	37.013	4.988	0	0	0	72	0	ADAM22	UTR3	NA
MB_Group4_T1--1	chr7:87839127	T	NA	23	0	23	35.087	5.393	0	0	0	22	0	SRI	intronic	NA
MB_Group4_T1--2	chr7:87839127	T	NA	14	0	14	35.929	2.786	0	0	0	14	0	SRI	intronic	NA
MB_Group4_T1--3	chr7:87839127	T	C	78	0.077	71	36.408	4.132	6	36.333	1.633	66	6	SRI	intronic	NA
MB_Group4_T1--4	chr7:87839127	T	NA	16	0	16	35.938	3.021	0	0	0	16	0	SRI	intronic	NA
MB_Group4_T1--5	chr7:87839127	T	C	39	0.179	32	34.562	5.180	7	37.000	0.000	28	7	SRI	intronic	NA
MB_Group4_T1--6	chr7:87839127	T	NA	23	0	23	34.565	6.294	0	0	0	22	0	SRI	intronic	NA
MB_Group4_T1--GL	chr7:87839127	T	NA	39	0	39	36.872	3.764	0	0	0	38	0	SRI	intronic	NA
MB_Group4_T1--1	chr7:923881	C	NA	41	0	41	33.463	7.912	0	0	0	38	0	GET4	intronic	NA
MB_Group4_T1--2	chr7:923881	C	NA	27	0	27	34.259	5.523	0	0	0	25	0	GET4	intronic	NA
MB_Group4_T1--3	chr7:923881	C	NA	140	0	140	34.464	4.372	0	0	0	131	0	GET4	intronic	NA
MB_Group4_T1--4	chr7:923881	C	NA	21	0	21	34.381	1.564	0	0	0	21	0	GET4	intronic	NA
MB_Group4_T1--5	chr7:923881	C	NA	127	0	126	33.492	5.387	0	0	0	111	0	GET4	intronic	NA
MB_Group4_T1--6	chr7:923881	C	A	14	0.286	10	35.200	4.315	4	31.500	6.351	9	3	GET4	intronic	NA
MB_Group4_T1--GL	chr7:923881	C	NA	65	0	64	33.750	6.003	0	0	0	59	0	GET4	intronic	NA
MB_Group4_T1--1	chr7:97498404	A	G	53	0.038	51	38.333	4.655	2	34.500	9.192	49	1	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:97498404	A	G	45	0.022	44	37.909	3.298	1	35.000	0.000	43	1	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:97498404	A	G	183	0.077	169	37.467	4.883	14	36.929	1.940	158	14	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:97498404	A	G	27	0.074	25	37.760	3.004	2	37.000	0.000	24	2	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:97498404	A	G	142	0.218	110	38.500	2.558	31	36.806	1.701	110	31	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:97498404	A	G	29	0.069	27	36.556	5.176	2	33.500	2.121	24	2	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:97498404	A	NA	142	0	142	37.775	3.884	0	0	0	138	0	ASNS	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:97498433	A	G	37	0.027	36	38.306	3.078	1	41.000	0.000	35	1	ASNS	exonic	synonymous_SNV
MB_Group4_T1--2	chr7:97498433	A	G	34	0.088	31	38.871	2.630	3	28.000	15.588	31	2	ASNS	exonic	synonymous_SNV
MB_Group4_T1--3	chr7:97498433	A	G	113	0.071	105	38.495	3.498	8	35.875	1.808	101	8	ASNS	exonic	synonymous_SNV
MB_Group4_T1--4	chr7:97498433	A	NA	18	0	18	38.222	4.095	0	0	0	17	0	ASNS	exonic	synonymous_SNV
MB_Group4_T1--5	chr7:97498433	A	G	99	0.242	75	38.640	3.216	24	35.500	4.294	74	23	ASNS	exonic	synonymous_SNV
MB_Group4_T1--6	chr7:97498433	A	NA	16	0	16	38.562	3.405	0	0	0	16	0	ASNS	exonic	synonymous_SNV
MB_Group4_T1--GL	chr7:97498433	A	NA	86	0	85	37.224	6.648	0	0	0	80	0	ASNS	exonic	synonymous_SNV
MB_Group4_T1--1	chr7:99021339	G	T	32	0.188	26	30.692	5.206	6	34.833	4.021	19	6	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--2	chr7:99021339	G	NA	34	0	34	31.059	4.355	0	0	0	29	0	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--3	chr7:99021339	G	T	208	0.010	206	30.966	5.014	2	34.000	1.414	159	2	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--4	chr7:99021339	G	NA	15	0	15	30.533	6.093	0	0	0	12	0	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--5	chr7:99021339	G	NA	124	0	123	31.220	5.712	0	0	0	96	0	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--6	chr7:99021339	G	NA	25	0	25	30.880	3.244	0	0	0	19	0	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--GL	chr7:99021339	G	NA	69	0	69	31.232	5.039	0	0	0	55	0	ATP5J2-PTCD1,PTCD1	intronic	NA
MB_Group4_T1--1	chr7:99569609	T	G	36	0.111	32	36.531	3.592	4	34.000	2.449	31	4	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr7:99569609	T	G	54	0.185	44	35.909	5.229	10	34.300	3.713	43	9	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr7:99569609	T	G	110	0.073	102	36.137	3.869	8	33.000	3.071	96	7	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr7:99569609	T	G	22	0.273	16	36.750	2.745	6	35.167	2.858	16	6	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr7:99569609	T	G	53	0.113	47	35.809	5.424	6	33.667	5.428	43	5	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr7:99569609	T	G	24	0.292	17	36.235	4.644	7	34.143	1.773	16	7	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr7:99569609	T	NA	45	0	45	35.778	3.599	0	0	0	43	0	AZGP1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr7:99578359	C	T	40	0.200	32	38.500	2.064	8	37.500	2.619	32	8	AZGP1P1	upstream	NA
MB_Group4_T1--2	chr7:99578359	C	T	51	0.176	42	37.429	3.801	9	37.556	1.810	40	9	AZGP1P1	upstream	NA
MB_Group4_T1--3	chr7:99578359	C	T	134	0.104	119	37.924	4.086	14	37.357	2.240	118	14	AZGP1P1	upstream	NA
MB_Group4_T1--4	chr7:99578359	C	NA	18	0	18	37.889	2.632	0	0	0	18	0	AZGP1P1	upstream	NA
MB_Group4_T1--5	chr7:99578359	C	T	118	0.119	104	37.567	3.689	14	35.714	6.438	101	12	AZGP1P1	upstream	NA
MB_Group4_T1--6	chr7:99578359	C	T	26	0.038	25	35.760	6.023	1	35.000	0.000	22	1	AZGP1P1	upstream	NA
MB_Group4_T1--GL	chr7:99578359	C	NA	74	0	74	37.135	3.361	0	0	0	72	0	AZGP1P1	upstream	NA
MB_Group4_T1--1	chr7:99581037	C	T	31	0.097	28	33.929	7.488	3	37.000	0.000	24	3	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--2	chr7:99581037	C	T	35	0.200	28	35.321	5.869	7	37.000	0.000	25	7	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--3	chr7:99581037	C	T	154	0.058	144	35.854	4.363	9	35.778	2.991	138	8	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--4	chr7:99581037	C	NA	11	0	11	32.727	5.120	0	0	0	9	0	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--5	chr7:99581037	C	T	62	0.065	58	36.466	2.780	4	35.750	2.500	57	4	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--6	chr7:99581037	C	T	20	0.200	16	35.062	8.012	4	37.000	0.000	15	4	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--GL	chr7:99581037	C	NA	58	0	57	35.860	3.786	0	0	0	54	0	AZGP1P1	ncRNA_exonic	NA
MB_Group4_T1--1	chr7:99796309	C	NA	17	0	17	37.000	3.021	0	0	0	17	0	STAG3	intronic	NA
MB_Group4_T1--2	chr7:99796309	C	NA	24	0	24	37.792	3.203	0	0	0	23	0	STAG3	intronic	NA
MB_Group4_T1--3	chr7:99796309	C	NA	87	0	87	36.920	4.483	0	0	0	82	0	STAG3	intronic	NA
MB_Group4_T1--4	chr7:99796309	C	T	14	0.357	9	34.889	10.068	5	34.800	4.712	8	4	STAG3	intronic	NA
MB_Group4_T1--5	chr7:99796309	C	NA	55	0	55	37.945	3.540	0	0	0	53	0	STAG3	intronic	NA
MB_Group4_T1--6	chr7:99796309	C	T	20	0.300	14	37.786	3.401	6	37.667	1.862	14	6	STAG3	intronic	NA
MB_Group4_T1--GL	chr7:99796309	C	NA	53	0	53	36.642	5.589	0	0	0	49	0	STAG3	intronic	NA
MB_Group4_T1--1	chr8:104388167	A	NA	35	0	35	37.600	2.943	0	0	0	35	0	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr8:104388167	A	NA	43	0	43	36.884	5.202	0	0	0	41	0	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr8:104388167	A	NA	55	0	55	37.873	4.823	0	0	0	54	0	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr8:104388167	A	G	41	0.463	22	38.000	2.845	19	37.737	2.941	22	19	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr8:104388167	A	NA	19	0	19	37.842	5.429	0	0	0	18	0	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr8:104388167	A	G	19	0.737	5	38.000	3.000	14	35.429	7.208	5	13	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr8:104388167	A	NA	89	0	89	37.169	4.533	0	0	0	83	0	CTHRC1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr8:105361550	G	NA	22	0	22	35.636	6.433	0	0	0	21	0	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr8:105361550	G	NA	22	0	22	39.500	1.739	0	0	0	22	0	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr8:105361550	G	T	61	0.033	59	38.085	3.650	2	36.500	0.707	57	2	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr8:105361550	G	NA	31	0	31	38.452	3.107	0	0	0	31	0	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr8:105361550	G	T	14	0.357	9	35.667	4.359	5	37.600	2.074	8	5	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr8:105361550	G	NA	16	0	16	36.125	8.884	0	0	0	14	0	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr8:105361550	G	NA	124	0	124	37.976	3.282	0	0	0	121	0	DCSTAMP	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr8:11416255	C	NA	16	0	16	35.312	3.979	0	0	0	15	0	BLK	intronic	NA
MB_Group4_T1--2	chr8:11416255	C	NA	26	0	26	34.192	6.853	0	0	0	22	0	BLK	intronic	NA
MB_Group4_T1--3	chr8:11416255	C	NA	64	0	64	33.938	6.520	0	0	0	56	0	BLK	intronic	NA
MB_Group4_T1--4	chr8:11416255	C	NA	13	0	13	34.923	3.861	0	0	0	12	0	BLK	intronic	NA
MB_Group4_T1--5	chr8:11416255	C	NA	31	0	31	34.387	3.413	0	0	0	28	0	BLK	intronic	NA
MB_Group4_T1--6	chr8:11416255	C	A	14	0.214	11	29.909	11.657	3	34.667	0.577	9	3	BLK	intronic	NA
MB_Group4_T1--GL	chr8:11416255	C	NA	68	0	68	34.250	5.044	0	0	0	62	0	BLK	intronic	NA
MB_Group4_T1--1	chr8:133113531	A	NA	15	0	15	37.400	3.180	0	0	0	15	0	HHLA1	intronic	NA
MB_Group4_T1--2	chr8:133113531	A	T	24	0.083	22	38.682	2.533	2	38.500	3.536	22	2	HHLA1	intronic	NA
MB_Group4_T1--3	chr8:133113531	A	NA	23	0	23	36.130	4.257	0	0	0	21	0	HHLA1	intronic	NA
MB_Group4_T1--4	chr8:133113531	A	NA	17	0	17	35.000	7.340	0	0	0	15	0	HHLA1	intronic	NA
MB_Group4_T1--5	chr8:133113531	A	T	10	0.300	7	37.286	3.200	3	37.000	6.083	7	3	HHLA1	intronic	NA
MB_Group4_T1--6	chr8:133113531	A	NA	12	0	12	36.250	6.440	0	0	0	11	0	HHLA1	intronic	NA
MB_Group4_T1--GL	chr8:133113531	A	NA	66	0	66	37.970	2.584	0	0	0	66	0	HHLA1	intronic	NA
MB_Group4_T1--1	chr8:133144282	T	NA	13	0	13	33.692	4.404	0	0	0	12	0	KCNQ3	intronic	NA
MB_Group4_T1--2	chr8:133144282	T	C	24	0.042	23	33.696	6.629	1	37.000	0.000	20	1	KCNQ3	intronic	NA
MB_Group4_T1--3	chr8:133144282	T	C	60	0.150	51	35.314	5.327	9	36.778	0.667	46	9	KCNQ3	intronic	NA
MB_Group4_T1--4	chr8:133144282	T	C	15	0.067	14	35.143	4.865	1	37.000	0.000	13	1	KCNQ3	intronic	NA
MB_Group4_T1--5	chr8:133144282	T	C	33	0.242	25	33.880	5.011	8	36.500	0.926	21	8	KCNQ3	intronic	NA
MB_Group4_T1--6	chr8:133144282	T	C	10	0.100	9	35.111	3.655	1	33.000	0.000	9	1	KCNQ3	intronic	NA
MB_Group4_T1--GL	chr8:133144282	T	NA	104	0	104	34.144	5.555	0	0	0	87	0	KCNQ3	intronic	NA
MB_Group4_T1--1	chr8:133144284	A	NA	13	0	13	35.769	2.421	0	0	0	13	0	KCNQ3	intronic	NA
MB_Group4_T1--2	chr8:133144284	A	C	23	0.043	22	35.955	6.083	1	37.000	0.000	21	1	KCNQ3	intronic	NA
MB_Group4_T1--3	chr8:133144284	A	C	60	0.117	53	36.057	5.101	7	36.714	0.756	48	7	KCNQ3	intronic	NA
MB_Group4_T1--4	chr8:133144284	A	C	15	0.067	14	36.714	3.667	1	37.000	0.000	14	1	KCNQ3	intronic	NA
MB_Group4_T1--5	chr8:133144284	A	C	33	0.212	24	36.042	3.569	7	36.714	0.756	23	7	KCNQ3	intronic	NA
MB_Group4_T1--6	chr8:133144284	A	C	10	0.100	9	36.556	3.432	1	35.000	0.000	8	1	KCNQ3	intronic	NA
MB_Group4_T1--GL	chr8:133144284	A	NA	104	0	104	36.346	4.924	0	0	0	95	0	KCNQ3	intronic	NA
MB_Group4_T1--1	chr8:133668969	T	C	17	0.176	14	38.000	4.867	3	38.333	2.309	12	3	LRRC6	intronic	NA
MB_Group4_T1--2	chr8:133668969	T	C	12	0.333	8	38.125	6.600	4	38.500	1.915	7	4	LRRC6	intronic	NA
MB_Group4_T1--3	chr8:133668969	T	NA	23	0	23	39.043	2.931	0	0	0	23	0	LRRC6	intronic	NA
MB_Group4_T1--4	chr8:133668969	T	C	11	0.091	10	36.000	5.907	1	41.000	0.000	8	1	LRRC6	intronic	NA
MB_Group4_T1--5	chr8:133668969	T	C	18	0.167	15	38.133	3.583	3	37.000	0.000	15	3	LRRC6	intronic	NA
MB_Group4_T1--6	chr8:133668969	T	NA	12	0	12	39.083	2.065	0	0	0	12	0	LRRC6	intronic	NA
MB_Group4_T1--GL	chr8:133668969	T	NA	47	0	47	38.277	4.990	0	0	0	46	0	LRRC6	intronic	NA
MB_Group4_T1--1	chr8:143958199	G	C	71	0.366	45	35.889	4.018	26	34.000	8.347	40	21	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr8:143958199	G	NA	71	0	71	36.113	4.166	0	0	0	65	0	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr8:143958199	G	C	352	0.065	329	35.426	5.101	23	35.609	5.852	299	19	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr8:143958199	G	NA	57	0	57	33.930	5.961	0	0	0	50	0	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr8:143958199	G	NA	303	0	303	35.353	4.753	0	0	0	274	0	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr8:143958199	G	NA	55	0	55	34.836	5.333	0	0	0	47	0	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr8:143958199	G	NA	320	0	320	35.384	5.092	0	0	0	285	0	CYP11B1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr8:37706016	A	NA	11	0	11	37.455	1.809	0	0	0	11	0	BRF2	intronic	NA
MB_Group4_T1--2	chr8:37706016	A	NA	14	0	13	39.000	2.273	0	0	0	13	0	BRF2	intronic	NA
MB_Group4_T1--3	chr8:37706016	A	C	48	0.083	44	38.068	3.385	4	37.000	0.000	43	4	BRF2	intronic	NA
MB_Group4_T1--4	chr8:37706016	A	C	14	0.071	13	36.692	4.571	1	37.000	0.000	12	1	BRF2	intronic	NA
MB_Group4_T1--5	chr8:37706016	A	C	38	0.237	29	37.345	3.940	9	37.000	0.000	27	9	BRF2	intronic	NA
MB_Group4_T1--6	chr8:37706016	A	C	10	0.200	7	37.143	8.133	2	36.000	1.414	6	2	BRF2	intronic	NA
MB_Group4_T1--GL	chr8:37706016	A	NA	39	0	39	38.615	3.200	0	0	0	38	0	BRF2	intronic	NA
MB_Group4_T1--1	chr8:54147387	C	A	24	0.167	20	36.450	2.874	4	38.000	2.582	20	4	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr8:54147387	C	NA	19	0	19	36.895	3.247	0	0	0	18	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr8:54147387	C	NA	45	0	45	36.800	5.075	0	0	0	43	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr8:54147387	C	NA	25	0	25	36.320	6.033	0	0	0	24	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr8:54147387	C	NA	14	0	14	37.286	3.221	0	0	0	14	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr8:54147387	C	NA	17	0	17	35.824	3.067	0	0	0	16	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr8:54147387	C	NA	81	0	81	37.568	3.467	0	0	0	78	0	OPRK1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr8:61769195	A	NA	39	0	39	37.590	2.962	0	0	0	39	0	CHD7	exonic	synonymous_SNV
MB_Group4_T1--2	chr8:61769195	A	G	29	0.069	27	37.333	2.527	2	41.000	0.000	27	2	CHD7	exonic	synonymous_SNV
MB_Group4_T1--3	chr8:61769195	A	G	40	0.125	35	38.000	2.623	5	39.400	1.673	35	5	CHD7	exonic	synonymous_SNV
MB_Group4_T1--4	chr8:61769195	A	NA	40	0	40	37.275	3.419	0	0	0	39	0	CHD7	exonic	synonymous_SNV
MB_Group4_T1--5	chr8:61769195	A	NA	14	0	14	34.000	5.306	0	0	0	13	0	CHD7	exonic	synonymous_SNV
MB_Group4_T1--6	chr8:61769195	A	NA	17	0	17	37.412	3.163	0	0	0	17	0	CHD7	exonic	synonymous_SNV
MB_Group4_T1--GL	chr8:61769195	A	NA	161	0	161	37.217	3.001	0	0	0	160	0	CHD7	exonic	synonymous_SNV
MB_Group4_T1--1	chr8:69011896	C	T	12	0.333	8	35.250	5.445	4	33.000	4.690	7	3	PREX2	intronic	NA
MB_Group4_T1--2	chr8:69011896	C	T	13	0.077	12	38.167	2.038	1	36.000	0.000	12	1	PREX2	intronic	NA
MB_Group4_T1--3	chr8:69011896	C	NA	22	0	20	36.850	4.095	0	0	0	19	0	PREX2	intronic	NA
MB_Group4_T1--4	chr8:69011896	C	NA	17	0	17	36.647	3.239	0	0	0	16	0	PREX2	intronic	NA
MB_Group4_T1--5	chr8:69011896	C	NA	10	0	10	36.300	3.561	0	0	0	10	0	PREX2	intronic	NA
MB_Group4_T1--6	chr8:69011896	C	NA	12	0	12	37.750	3.769	0	0	0	11	0	PREX2	intronic	NA
MB_Group4_T1--GL	chr8:69011896	C	NA	95	0	95	36.011	4.673	0	0	0	90	0	PREX2	intronic	NA
MB_Group4_T1--1	chr8:86753090	T	NA	23	0	23	36.609	3.327	0	0	0	23	0	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--2	chr8:86753090	T	C	23	0.087	21	36.952	2.747	2	36.000	1.414	21	2	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--3	chr8:86753090	T	NA	31	0	31	35.613	2.940	0	0	0	30	0	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--4	chr8:86753090	T	NA	20	0	20	35.250	5.562	0	0	0	19	0	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--5	chr8:86753090	T	C	49	0.245	37	36.622	2.396	12	35.583	2.503	37	12	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--6	chr8:86753090	T	NA	13	0	13	36.308	4.231	0	0	0	12	0	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--GL	chr8:86753090	T	NA	34	0	34	35.912	3.988	0	0	0	33	0	REXO1L2P(dist=3486),REXO1L2P(dist=3594)	intergenic	NA
MB_Group4_T1--1	chr8:95782877	G	A	18	0.167	15	35.400	4.050	3	35.667	1.155	14	3	DPY19L4	intronic	NA
MB_Group4_T1--2	chr8:95782877	G	A	21	0.143	17	36.647	2.473	3	35.000	2.000	17	3	DPY19L4	intronic	NA
MB_Group4_T1--3	chr8:95782877	G	NA	49	0	49	36.633	3.046	0	0	0	49	0	DPY19L4	intronic	NA
MB_Group4_T1--4	chr8:95782877	G	A	15	0.067	14	35.714	2.867	1	32.000	0.000	14	1	DPY19L4	intronic	NA
MB_Group4_T1--5	chr8:95782877	G	A	26	0.308	18	35.556	3.585	8	36.125	0.991	17	8	DPY19L4	intronic	NA
MB_Group4_T1--6	chr8:95782877	G	A	15	0.067	14	37.143	2.248	1	37.000	0.000	14	1	DPY19L4	intronic	NA
MB_Group4_T1--GL	chr8:95782877	G	NA	72	0	71	36.141	5.378	0	0	0	63	0	DPY19L4	intronic	NA
MB_Group4_T1--1	chr9:123794296	G	NA	35	0	35	37.057	5.630	0	0	0	34	0	C5	intronic	NA
MB_Group4_T1--2	chr9:123794296	G	A	31	0.097	28	37.857	2.606	3	35.667	1.155	28	3	C5	intronic	NA
MB_Group4_T1--3	chr9:123794296	G	A	74	0.014	73	36.986	4.221	1	35.000	0.000	69	1	C5	intronic	NA
MB_Group4_T1--4	chr9:123794296	G	A	25	0.080	23	36.522	3.273	2	37.000	0.000	23	2	C5	intronic	NA
MB_Group4_T1--5	chr9:123794296	G	A	43	0.186	35	35.800	7.214	8	36.000	1.512	33	8	C5	intronic	NA
MB_Group4_T1--6	chr9:123794296	G	NA	17	0	16	37.562	3.915	0	0	0	16	0	C5	intronic	NA
MB_Group4_T1--GL	chr9:123794296	G	NA	91	0	91	36.747	3.282	0	0	0	91	0	C5	intronic	NA
MB_Group4_T1--1	chr9:124048430	G	T	22	0.182	18	36.000	4.406	4	35.750	4.992	17	3	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr9:124048430	G	NA	26	0	26	35.808	3.805	0	0	0	25	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr9:124048430	G	NA	56	0	56	35.393	5.996	0	0	0	50	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr9:124048430	G	NA	15	0	15	35.400	3.439	0	0	0	14	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr9:124048430	G	NA	40	0	40	36.400	5.642	0	0	0	37	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr9:124048430	G	NA	11	0	11	37.182	5.154	0	0	0	10	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr9:124048430	G	NA	36	0	36	36.667	3.964	0	0	0	34	0	GSN	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr9:125437457	C	NA	17	0	17	38.176	2.744	0	0	0	17	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr9:125437457	C	NA	17	0	17	34.765	7.846	0	0	0	15	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr9:125437457	C	NA	57	0	57	38.456	3.117	0	0	0	55	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr9:125437457	C	NA	19	0	19	36.579	4.032	0	0	0	17	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr9:125437457	C	A	16	0.188	13	37.923	3.639	3	38.667	3.215	12	3	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr9:125437457	C	NA	16	0	16	37.812	2.401	0	0	0	16	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr9:125437457	C	NA	53	0	53	37.264	5.178	0	0	0	50	0	OR1L3	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr9:12695513	A	NA	21	0	21	36.429	5.446	0	0	0	18	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--2	chr9:12695513	A	NA	39	0	39	37.590	2.572	0	0	0	39	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--3	chr9:12695513	A	NA	64	0	64	35.500	4.522	0	0	0	57	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--4	chr9:12695513	A	NA	39	0	39	37.487	5.331	0	0	0	38	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--5	chr9:12695513	A	NA	10	0	10	36.800	1.229	0	0	0	10	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--6	chr9:12695513	A	C	15	0.200	12	36.000	3.384	3	35.333	1.528	12	3	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--GL	chr9:12695513	A	NA	121	0	121	36.975	3.249	0	0	0	119	0	TYRP1(NM_000550:exon3:c.386-2A>C)	splicing	NA
MB_Group4_T1--1	chr9:129946167	C	G	31	0.258	23	37.348	3.200	8	37.000	2.138	23	8	RALGPS1	intronic	NA
MB_Group4_T1--2	chr9:129946167	C	G	32	0.219	25	36.920	5.908	7	36.429	0.976	24	7	RALGPS1	intronic	NA
MB_Group4_T1--3	chr9:129946167	C	G	97	0.113	86	35.756	5.120	11	36.364	1.567	76	11	RALGPS1	intronic	NA
MB_Group4_T1--4	chr9:129946167	C	G	23	0.217	18	36.000	5.891	5	37.600	1.342	17	5	RALGPS1	intronic	NA
MB_Group4_T1--5	chr9:129946167	C	G	77	0.273	56	35.714	4.552	21	36.667	2.266	53	21	RALGPS1	intronic	NA
MB_Group4_T1--6	chr9:129946167	C	G	15	0.267	11	37.273	3.717	4	36.500	1.000	10	4	RALGPS1	intronic	NA
MB_Group4_T1--GL	chr9:129946167	C	NA	40	0	40	36.450	4.076	0	0	0	39	0	RALGPS1	intronic	NA
MB_Group4_T1--1	chr9:13143579	A	NA	23	0	23	38.348	2.479	0	0	0	23	0	MPDZ	intronic	NA
MB_Group4_T1--2	chr9:13143579	A	NA	25	0	25	37.840	4.922	0	0	0	24	0	MPDZ	intronic	NA
MB_Group4_T1--3	chr9:13143579	A	NA	27	0	27	36.037	3.514	0	0	0	24	0	MPDZ	intronic	NA
MB_Group4_T1--4	chr9:13143579	A	NA	26	0	26	37.769	3.076	0	0	0	25	0	MPDZ	intronic	NA
MB_Group4_T1--5	chr9:13143579	A	NA	13	0	13	37.154	2.193	0	0	0	13	0	MPDZ	intronic	NA
MB_Group4_T1--6	chr9:13143579	A	G	17	0.176	14	39.571	1.697	3	38.000	2.646	14	3	MPDZ	intronic	NA
MB_Group4_T1--GL	chr9:13143579	A	NA	67	0	67	37.522	3.492	0	0	0	66	0	MPDZ	intronic	NA
MB_Group4_T1--1	chr9:131689098	G	C	17	0.118	15	36.667	3.994	2	36.000	1.414	13	2	PHYHD1	intronic	NA
MB_Group4_T1--2	chr9:131689098	G	C	18	0.056	17	37.529	1.772	1	37.000	0.000	17	1	PHYHD1	intronic	NA
MB_Group4_T1--3	chr9:131689098	G	C	65	0.015	64	36.547	4.947	1	41.000	0.000	61	1	PHYHD1	intronic	NA
MB_Group4_T1--4	chr9:131689098	G	C	15	0.267	10	34.900	2.132	4	37.500	1.000	10	4	PHYHD1	intronic	NA
MB_Group4_T1--5	chr9:131689098	G	NA	38	0	38	35.711	4.614	0	0	0	35	0	PHYHD1	intronic	NA
MB_Group4_T1--6	chr9:131689098	G	C	15	0.133	13	37.000	3.512	2	38.000	1.414	12	2	PHYHD1	intronic	NA
MB_Group4_T1--GL	chr9:131689098	G	NA	35	0	35	37.171	4.349	0	0	0	32	0	PHYHD1	intronic	NA
MB_Group4_T1--1	chr9:132889805	T	NA	36	0	36	37.556	3.102	0	0	0	35	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr9:132889805	T	C	20	0.200	16	39.562	1.788	4	34.750	6.752	16	3	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr9:132889805	T	NA	77	0	77	37.961	3.522	0	0	0	76	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr9:132889805	T	NA	16	0	16	38.188	2.257	0	0	0	16	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr9:132889805	T	NA	30	0	30	35.233	8.709	0	0	0	25	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr9:132889805	T	NA	13	0	13	38.231	2.488	0	0	0	13	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr9:132889805	T	NA	69	0	69	37.449	3.728	0	0	0	66	0	GPR107	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr9:134384626	T	C	23	0.217	18	37.111	4.042	5	36.200	3.033	17	5	POMT1	intronic	NA
MB_Group4_T1--2	chr9:134384626	T	C	31	0.065	29	37.483	3.203	2	39.500	0.707	29	2	POMT1	intronic	NA
MB_Group4_T1--3	chr9:134384626	T	C	96	0.083	88	37.523	3.629	8	36.875	2.031	84	8	POMT1	intronic	NA
MB_Group4_T1--4	chr9:134384626	T	C	15	0.133	13	38.077	2.565	2	31.000	8.485	13	1	POMT1	intronic	NA
MB_Group4_T1--5	chr9:134384626	T	C	74	0.149	63	37.429	3.847	11	35.636	4.342	61	10	POMT1	intronic	NA
MB_Group4_T1--6	chr9:134384626	T	C	15	0.133	13	35.077	5.545	2	38.500	0.707	11	2	POMT1	intronic	NA
MB_Group4_T1--GL	chr9:134384626	T	NA	41	0	41	37.976	3.029	0	0	0	40	0	POMT1	intronic	NA
MB_Group4_T1--1	chr9:135133919	T	C	14	0.071	13	37.308	3.119	1	34.000	0.000	12	1	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--2	chr9:135133919	T	C	21	0.286	15	38.200	3.406	6	36.000	1.673	14	6	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--3	chr9:135133919	T	C	52	0.019	51	37.725	2.940	1	37.000	0.000	50	1	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--4	chr9:135133919	T	NA	12	0	12	37.250	7.275	0	0	0	10	0	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--5	chr9:135133919	T	C	39	0.077	36	36.583	5.944	3	36.333	1.155	32	3	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--6	chr9:135133919	T	C	11	0.091	10	38.300	2.452	1	37.000	0.000	10	1	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--GL	chr9:135133919	T	NA	40	0	40	36.450	5.706	0	0	0	38	0	NTNG2(dist=15699),SETX(dist=2908)	intergenic	NA
MB_Group4_T1--1	chr9:136030575	C	A	22	0.182	18	36.444	2.935	4	37.500	3.000	18	4	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr9:136030575	C	NA	21	0	21	35.857	4.430	0	0	0	20	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr9:136030575	C	NA	90	0	90	36.567	4.816	0	0	0	85	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr9:136030575	C	NA	13	0	13	36.615	3.501	0	0	0	13	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr9:136030575	C	NA	55	0	55	36.309	4.529	0	0	0	52	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr9:136030575	C	NA	10	0	10	36.300	3.498	0	0	0	10	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr9:136030575	C	NA	59	0	59	35.983	5.181	0	0	0	56	0	GBGT1	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr9:139101114	C	NA	22	0	22	36.273	4.600	0	0	0	20	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--2	chr9:139101114	C	NA	10	0	10	38.400	2.633	0	0	0	10	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--3	chr9:139101114	C	NA	100	0	100	36.450	4.115	0	0	0	97	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--4	chr9:139101114	C	A	17	0.176	14	38.286	2.920	3	36.667	2.517	14	3	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--5	chr9:139101114	C	NA	82	0	82	36.000	4.912	0	0	0	76	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--6	chr9:139101114	C	NA	15	0	15	35.467	6.643	0	0	0	13	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--GL	chr9:139101114	C	NA	44	0	44	37.091	3.483	0	0	0	43	0	QSOX2	exonic	synonymous_SNV
MB_Group4_T1--1	chr9:139282196	C	NA	34	0	34	37.294	2.960	0	0	0	34	0	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--2	chr9:139282196	C	NA	33	0	33	36.667	2.642	0	0	0	33	0	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--3	chr9:139282196	C	NA	223	0	223	35.646	3.833	0	0	0	216	0	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--4	chr9:139282196	C	A	13	0.231	10	35.300	2.111	3	34.000	2.646	10	3	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--5	chr9:139282196	C	A	167	0.006	166	35.892	4.553	1	37.000	0.000	157	1	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--6	chr9:139282196	C	NA	14	0	14	35.714	2.644	0	0	0	14	0	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--GL	chr9:139282196	C	NA	72	0	72	34.917	5.161	0	0	0	66	0	SNAPC4	exonic	nonsynonymous_SNV
MB_Group4_T1--1	chr9:140918265	T	NA	29	0	29	33.862	5.547	0	0	0	23	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--2	chr9:140918265	T	NA	22	0	22	31.909	8.502	0	0	0	16	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--3	chr9:140918265	T	NA	61	0	61	34.033	4.803	0	0	0	49	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--4	chr9:140918265	T	C	15	0.267	11	33.000	5.586	4	36.000	2.000	9	4	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--5	chr9:140918265	T	NA	45	0	45	33.822	6.311	0	0	0	37	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--6	chr9:140918265	T	NA	10	0	10	34.300	5.618	0	0	0	9	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--GL	chr9:140918265	T	NA	49	0	49	31.939	7.119	0	0	0	35	0	CACNA1B(NM_000718:exon19:c.3068+2T>C,NM_001243812:exon19:c.3068+2T>C)	splicing	NA
MB_Group4_T1--1	chr9:14690339	T	NA	59	0	59	38.085	3.395	0	0	0	57	0	ZDHHC21	UTR5	NA
MB_Group4_T1--2	chr9:14690339	T	NA	47	0	47	38.234	3.066	0	0	0	47	0	ZDHHC21	UTR5	NA
MB_Group4_T1--3	chr9:14690339	T	NA	57	0	57	38.053	4.966	0	0	0	55	0	ZDHHC21	UTR5	NA
MB_Group4_T1--4	chr9:14690339	T	NA	27	0	27	38.556	2.470	0	0	0	27	0	ZDHHC21	UTR5	NA
MB_Group4_T1--5	chr9:14690339	T	NA	36	0	36	38.083	2.545	0	0	0	36	0	ZDHHC21	UTR5	NA
MB_Group4_T1--6	chr9:14690339	T	A	17	0.176	14	35.857	4.865	3	39.333	2.082	11	3	ZDHHC21	UTR5	NA
MB_Group4_T1--GL	chr9:14690339	T	NA	44	0	44	37.545	4.868	0	0	0	42	0	ZDHHC21	UTR5	NA
MB_Group4_T1--1	chr9:19380114	C	NA	11	0	11	35.273	4.901	0	0	0	10	0	RPS6	intronic	NA
MB_Group4_T1--2	chr9:19380114	C	NA	17	0	17	37.059	4.802	0	0	0	15	0	RPS6	intronic	NA
MB_Group4_T1--3	chr9:19380114	C	NA	61	0	61	37.852	3.114	0	0	0	60	0	RPS6	intronic	NA
MB_Group4_T1--4	chr9:19380114	C	A	11	0.273	8	33.750	6.628	3	37.000	3.606	7	3	RPS6	intronic	NA
MB_Group4_T1--5	chr9:19380114	C	NA	65	0	65	37.600	3.786	0	0	0	62	0	RPS6	intronic	NA
MB_Group4_T1--6	chr9:19380114	C	NA	12	0	12	39.000	1.758	0	0	0	12	0	RPS6	intronic	NA
MB_Group4_T1--GL	chr9:19380114	C	NA	34	0	34	38.176	3.242	0	0	0	33	0	RPS6	intronic	NA
MB_Group4_T1--1	chr9:20916828	A	NA	51	0	51	39.196	2.254	0	0	0	51	0	FOCAD	intronic	NA
MB_Group4_T1--2	chr9:20916828	A	NA	24	0	24	38.042	2.820	0	0	0	24	0	FOCAD	intronic	NA
MB_Group4_T1--3	chr9:20916828	A	NA	32	0	32	37.688	3.393	0	0	0	31	0	FOCAD	intronic	NA
MB_Group4_T1--4	chr9:20916828	A	NA	16	0	16	37.750	2.517	0	0	0	16	0	FOCAD	intronic	NA
MB_Group4_T1--5	chr9:20916828	A	C	13	0.231	10	38.800	1.814	3	38.333	2.082	10	3	FOCAD	intronic	NA
MB_Group4_T1--6	chr9:20916828	A	NA	10	0	10	37.100	3.178	0	0	0	10	0	FOCAD	intronic	NA
MB_Group4_T1--GL	chr9:20916828	A	NA	69	0	69	38.087	3.505	0	0	0	67	0	FOCAD	intronic	NA
MB_Group4_T1--1	chr9:32973201	G	NA	31	0	31	35.258	5.428	0	0	0	29	0	APTX	UTR3	NA
MB_Group4_T1--2	chr9:32973201	G	NA	35	0	35	37.857	2.390	0	0	0	35	0	APTX	UTR3	NA
MB_Group4_T1--3	chr9:32973201	G	NA	151	0	151	37.007	4.090	0	0	0	147	0	APTX	UTR3	NA
MB_Group4_T1--4	chr9:32973201	G	NA	27	0	27	37.111	3.030	0	0	0	27	0	APTX	UTR3	NA
MB_Group4_T1--5	chr9:32973201	G	C	35	0.257	26	38.038	2.720	9	38.444	2.651	26	9	APTX	UTR3	NA
MB_Group4_T1--6	chr9:32973201	G	NA	29	0	29	34.897	5.918	0	0	0	24	0	APTX	UTR3	NA
MB_Group4_T1--GL	chr9:32973201	G	NA	90	0	90	37.022	3.563	0	0	0	88	0	APTX	UTR3	NA
MB_Group4_T1--1	chr9:37490422	G	NA	18	0	18	37.722	3.528	0	0	0	17	0	POLR1E	intronic	NA
MB_Group4_T1--2	chr9:37490422	G	NA	19	0	19	37.211	4.158	0	0	0	18	0	POLR1E	intronic	NA
MB_Group4_T1--3	chr9:37490422	G	NA	54	0	54	37.167	3.441	0	0	0	53	0	POLR1E	intronic	NA
MB_Group4_T1--4	chr9:37490422	G	NA	12	0	12	39.500	1.784	0	0	0	12	0	POLR1E	intronic	NA
MB_Group4_T1--5	chr9:37490422	G	NA	21	0	21	37.476	3.400	0	0	0	21	0	POLR1E	intronic	NA
MB_Group4_T1--6	chr9:37490422	G	A	15	0.200	12	39.167	1.899	3	37.000	2.646	12	3	POLR1E	intronic	NA
MB_Group4_T1--GL	chr9:37490422	G	NA	47	0	47	36.191	3.615	0	0	0	45	0	POLR1E	intronic	NA
MB_Group4_T1--1	chr9:44873935	T	G	54	0.056	51	35.588	4.364	3	34.667	2.517	47	3	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--2	chr9:44873935	T	G	42	0.071	39	36.538	3.926	3	37.667	1.155	37	3	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--3	chr9:44873935	T	G	111	0.027	108	35.750	4.326	3	36.000	2.646	104	3	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--4	chr9:44873935	T	G	24	0.167	20	36.050	5.501	4	36.750	2.062	19	4	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--5	chr9:44873935	T	G	104	0.144	89	35.528	4.948	15	35.400	3.376	84	14	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--6	chr9:44873935	T	NA	28	0	28	37.071	3.102	0	0	0	28	0	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--GL	chr9:44873935	T	NA	38	0	38	36.342	3.685	0	0	0	38	0	LINC01189(dist=482519),FAM27C(dist=116301)	intergenic	NA
MB_Group4_T1--1	chr9:44874037	G	T	27	0.222	21	35.524	3.614	6	37.000	0.000	19	6	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--2	chr9:44874037	G	T	27	0.037	26	36.500	4.347	1	37.000	0.000	25	1	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--3	chr9:44874037	G	T	69	0.101	62	35.597	2.989	7	36.571	1.134	60	7	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--4	chr9:44874037	G	T	21	0.095	19	35.737	5.194	2	37.000	0.000	18	2	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--5	chr9:44874037	G	T	80	0.150	68	36.912	2.478	12	36.500	0.905	67	12	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--6	chr9:44874037	G	T	25	0.120	22	36.682	3.242	3	37.000	0.000	21	3	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--GL	chr9:44874037	G	NA	33	0	33	36.879	3.638	0	0	0	31	0	LINC01189(dist=482621),FAM27C(dist=116199)	intergenic	NA
MB_Group4_T1--1	chr9:44874050	C	NA	18	0	18	36.500	4.148	0	0	0	17	0	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--2	chr9:44874050	C	A	23	0.217	18	36.667	3.911	5	37.000	0.000	17	5	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--3	chr9:44874050	C	NA	53	0	53	35.717	6.514	0	0	0	48	0	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--4	chr9:44874050	C	A	12	0.167	10	35.900	5.705	2	37.000	0.000	9	2	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--5	chr9:44874050	C	A	48	0.083	43	37.837	3.109	4	34.250	4.272	43	3	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--6	chr9:44874050	C	A	14	0.071	13	37.538	2.989	1	37.000	0.000	13	1	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--GL	chr9:44874050	C	NA	37	0	37	36.676	5.360	0	0	0	35	0	LINC01189(dist=482634),FAM27C(dist=116186)	intergenic	NA
MB_Group4_T1--1	chr9:44874156	A	G	35	0.171	29	36.379	5.925	6	35.500	2.811	28	6	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--2	chr9:44874156	A	G	35	0.257	26	36.538	3.252	9	35.889	1.764	26	9	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--3	chr9:44874156	A	NA	85	0	85	36.506	4.407	0	0	0	78	0	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--4	chr9:44874156	A	G	17	0.176	14	38.357	2.560	3	37.000	2.000	14	3	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--5	chr9:44874156	A	G	95	0.200	76	36.684	3.246	19	36.421	1.465	73	19	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--6	chr9:44874156	A	G	24	0.125	21	36.571	2.694	3	37.000	0.000	21	3	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--GL	chr9:44874156	A	NA	33	0	33	36.848	3.365	0	0	0	32	0	LINC01189(dist=482740),FAM27C(dist=116080)	intergenic	NA
MB_Group4_T1--1	chr9:68416302	G	C	16	0.062	15	36.400	3.180	1	41.000	0.000	15	1	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--2	chr9:68416302	G	NA	17	0	15	37.867	3.399	0	0	0	15	0	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--3	chr9:68416302	G	C	59	0.102	49	36.143	6.973	6	36.333	2.658	44	6	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--4	chr9:68416302	G	C	18	0.278	13	35.462	4.034	5	35.400	5.367	12	4	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--5	chr9:68416302	G	C	33	0.030	32	36.688	3.632	1	41.000	0.000	32	1	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--6	chr9:68416302	G	NA	15	0	14	38.214	3.965	0	0	0	14	0	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--GL	chr9:68416302	G	NA	42	0	42	37.571	4.150	0	0	0	40	0	ANKRD20A3(dist=446009),LOC642236(dist=11481)	intergenic	NA
MB_Group4_T1--1	chr9:68425710	G	A	17	0.118	15	35.000	4.928	2	39.000	1.414	14	2	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--2	chr9:68425710	G	A	18	0.111	16	38.938	2.144	2	36.000	7.071	16	2	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--3	chr9:68425710	G	A	27	0.074	25	38.120	3.295	2	38.000	4.243	25	2	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--4	chr9:68425710	G	A	21	0.095	19	37.211	3.276	2	27.500	16.263	19	1	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--5	chr9:68425710	G	A	15	0.067	14	38.357	2.925	1	34.000	0.000	14	1	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--6	chr9:68425710	G	A	11	0.273	8	38.125	2.295	3	36.000	4.000	8	3	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--GL	chr9:68425710	G	NA	57	0	57	37.386	3.539	0	0	0	57	0	ANKRD20A3(dist=455417),LOC642236(dist=2073)	intergenic	NA
MB_Group4_T1--1	chr9:71667885	T	C	20	0.050	19	32.053	6.302	1	37.000	0.000	15	1	FXN	intronic	NA
MB_Group4_T1--2	chr9:71667885	T	NA	31	0	30	33.900	7.009	0	0	0	25	0	FXN	intronic	NA
MB_Group4_T1--3	chr9:71667885	T	C	73	0.014	71	33.507	5.981	1	37.000	0.000	59	1	FXN	intronic	NA
MB_Group4_T1--4	chr9:71667885	T	C	22	0.045	21	34.286	3.862	1	37.000	0.000	18	1	FXN	intronic	NA
MB_Group4_T1--5	chr9:71667885	T	C	54	0.093	49	33.653	7.361	5	36.200	1.643	42	5	FXN	intronic	NA
MB_Group4_T1--6	chr9:71667885	T	C	19	0.211	15	34.800	3.052	4	38.000	2.000	15	4	FXN	intronic	NA
MB_Group4_T1--GL	chr9:71667885	T	NA	63	0	63	34.778	5.517	0	0	0	56	0	FXN	intronic	NA
MB_Group4_T1--1	chr9:77400656	T	NA	11	0	11	34.909	4.158	0	0	0	10	0	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77400656	T	NA	16	0	16	34.750	3.804	0	0	0	15	0	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77400656	T	A	63	0.063	59	35.458	5.344	4	32.500	1.732	53	4	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77400656	T	NA	14	0	14	35.214	2.424	0	0	0	14	0	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77400656	T	A	57	0.193	46	33.935	7.154	11	33.000	3.286	38	10	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77400656	T	NA	12	0	12	34.833	4.469	0	0	0	10	0	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77400656	T	NA	53	0	53	34.717	4.448	0	0	0	48	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:77400660	T	NA	11	0	11	36.727	3.036	0	0	0	11	0	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77400660	T	NA	14	0	14	38.071	2.674	0	0	0	14	0	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77400660	T	C	59	0.068	55	36.436	4.198	4	37.000	0.000	51	4	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77400660	T	NA	15	0	15	36.200	2.242	0	0	0	15	0	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77400660	T	C	57	0.228	44	35.273	8.079	13	34.846	3.078	40	12	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77400660	T	NA	12	0	12	37.000	2.892	0	0	0	12	0	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77400660	T	NA	52	0	52	36.288	3.038	0	0	0	51	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:77407839	A	G	34	0.088	31	36.774	7.513	3	32.667	5.859	28	2	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77407839	A	NA	27	0	27	37.037	5.585	0	0	0	25	0	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77407839	A	G	65	0.092	59	38.356	3.231	6	36.667	0.816	57	6	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77407839	A	NA	13	0	13	37.615	8.713	0	0	0	12	0	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77407839	A	G	77	0.208	61	38.098	3.815	16	35.438	6.918	58	15	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77407839	A	G	11	0.091	10	38.400	2.675	1	37.000	0.000	10	1	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77407839	A	NA	80	0	80	37.788	4.313	0	0	0	76	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:77407843	T	C	33	0.091	30	37.100	6.343	3	33.667	0.577	28	3	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77407843	T	C	27	0.074	25	36.400	6.117	2	30.500	4.950	23	1	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77407843	T	C	63	0.079	58	37.000	4.928	5	33.400	1.342	54	5	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77407843	T	NA	13	0	13	38.385	3.254	0	0	0	13	0	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77407843	T	C	75	0.187	61	37.656	5.263	14	34.500	2.565	58	14	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77407843	T	C	11	0.091	10	37.800	2.348	1	34.000	0.000	10	1	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77407843	T	NA	83	0	83	37.241	4.498	0	0	0	80	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:77442546	G	A	35	0.200	28	37.036	3.260	7	37.000	0.000	28	7	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77442546	G	A	45	0.244	34	36.588	3.192	11	37.273	2.240	33	11	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77442546	G	A	164	0.134	142	35.796	4.934	22	32.864	6.889	130	17	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77442546	G	A	22	0.136	19	36.421	4.363	3	35.000	3.464	18	3	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77442546	G	A	192	0.198	154	35.584	5.157	38	35.763	3.900	143	36	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77442546	G	A	28	0.036	27	36.148	6.274	1	37.000	0.000	25	1	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77442546	G	NA	45	0	45	37.044	3.219	0	0	0	43	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:77442576	T	C	64	0.203	50	26.500	7.872	13	34.692	2.626	24	12	TRPM6	intronic	NA
MB_Group4_T1--2	chr9:77442576	T	C	70	0.229	53	26.906	8.732	16	32.875	3.810	24	14	TRPM6	intronic	NA
MB_Group4_T1--3	chr9:77442576	T	C	219	0.105	195	27.400	7.209	23	33.783	4.719	92	21	TRPM6	intronic	NA
MB_Group4_T1--4	chr9:77442576	T	C	39	0.154	33	27.848	5.799	6	34.500	1.225	15	6	TRPM6	intronic	NA
MB_Group4_T1--5	chr9:77442576	T	C	238	0.185	192	26.182	8.691	44	33.000	4.899	73	40	TRPM6	intronic	NA
MB_Group4_T1--6	chr9:77442576	T	C	40	0.150	34	27.324	7.281	6	31.000	10.392	13	5	TRPM6	intronic	NA
MB_Group4_T1--GL	chr9:77442576	T	NA	82	0	79	27.911	7.708	0	0	0	45	0	TRPM6	intronic	NA
MB_Group4_T1--1	chr9:79820786	A	G	24	0.208	19	37.842	2.968	5	38.600	1.673	19	5	VPS13A	intronic	NA
MB_Group4_T1--2	chr9:79820786	A	G	24	0.042	23	37.087	4.327	1	35.000	0.000	22	1	VPS13A	intronic	NA
MB_Group4_T1--3	chr9:79820786	A	NA	32	0	32	36.844	4.167	0	0	0	30	0	VPS13A	intronic	NA
MB_Group4_T1--4	chr9:79820786	A	G	15	0.067	14	38.000	2.828	1	39.000	0.000	14	1	VPS13A	intronic	NA
MB_Group4_T1--5	chr9:79820786	A	NA	25	0	24	37.208	3.526	0	0	0	24	0	VPS13A	intronic	NA
MB_Group4_T1--6	chr9:79820786	A	NA	11	0	11	38.091	3.239	0	0	0	11	0	VPS13A	intronic	NA
MB_Group4_T1--GL	chr9:79820786	A	NA	74	0	74	36.865	4.452	0	0	0	73	0	VPS13A	intronic	NA
MB_Group4_T1--1	chr9:90631855	A	G	20	0.100	18	36.889	3.428	2	36.000	1.414	17	2	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--2	chr9:90631855	A	G	24	0.042	23	35.000	5.054	1	36.000	0.000	21	1	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--3	chr9:90631855	A	G	54	0.056	51	36.961	2.835	3	35.000	2.000	51	3	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--4	chr9:90631855	A	NA	15	0	14	37.429	4.292	0	0	0	13	0	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--5	chr9:90631855	A	G	62	0.194	50	36.300	4.581	12	36.083	3.029	46	12	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--6	chr9:90631855	A	NA	14	0	14	34.429	4.831	0	0	0	13	0	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--GL	chr9:90631855	A	NA	40	0	39	34.641	6.201	0	0	0	35	0	CDK20(dist=42160),SPATA31C2(dist=112365)	intergenic	NA
MB_Group4_T1--1	chrM:7769	N	G	466	0.079	0	0.000	0.000	37	36.486	2.545	0	37	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--2	chrM:7769	N	G	452	0.084	0	0.000	0.000	38	37.105	3.726	0	37	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--3	chrM:7769	N	G	846	0.071	0	0.000	0.000	60	36.683	4.057	0	57	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--4	chrM:7769	N	G	428	0.065	0	0.000	0.000	28	33.786	8.185	0	23	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--5	chrM:7769	N	G	333	0.210	0	0.000	0.000	70	37.371	2.865	0	69	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--6	chrM:7769	N	G	307	0.049	0	0.000	0.000	15	36.333	3.638	0	15	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--GL	chrM:7769	N	G	475	0.128	0	0.000	0.000	61	36.803	3.038	0	60	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T1--1	chrX:110492271	C	A	20	0.150	17	37.882	1.996	3	40.000	1.000	17	3	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--2	chrX:110492271	C	NA	20	0	20	38.250	3.076	0	0	0	20	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--3	chrX:110492271	C	NA	57	0	57	35.491	4.859	0	0	0	52	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--4	chrX:110492271	C	NA	14	0	14	37.571	3.131	0	0	0	14	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--5	chrX:110492271	C	NA	14	0	14	35.571	4.127	0	0	0	13	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--6	chrX:110492271	C	NA	19	0	19	36.842	2.089	0	0	0	19	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--GL	chrX:110492271	C	NA	84	0	84	35.643	5.199	0	0	0	79	0	CAPN6	exonic	synonymous_SNV
MB_Group4_T1--1	chrX:123044535	C	T	14	0.071	13	38.154	2.968	1	39.000	0.000	13	1	XIAP	UTR3	NA
MB_Group4_T1--2	chrX:123044535	C	T	35	0.029	34	35.706	3.606	1	38.000	0.000	32	1	XIAP	UTR3	NA
MB_Group4_T1--3	chrX:123044535	C	NA	66	0	66	34.909	5.557	0	0	0	62	0	XIAP	UTR3	NA
MB_Group4_T1--4	chrX:123044535	C	NA	11	0	11	37.636	4.130	0	0	0	10	0	XIAP	UTR3	NA
MB_Group4_T1--5	chrX:123044535	C	T	65	0.185	50	36.720	3.698	12	37.750	3.769	49	11	XIAP	UTR3	NA
MB_Group4_T1--6	chrX:123044535	C	T	12	0.083	11	36.000	4.074	1	39.000	0.000	11	1	XIAP	UTR3	NA
MB_Group4_T1--GL	chrX:123044535	C	NA	62	0	62	35.339	3.996	0	0	0	60	0	XIAP	UTR3	NA
MB_Group4_T1--1	chrX:151896220	G	A	27	0.185	22	35.818	2.970	5	37.600	2.793	21	5	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--2	chrX:151896220	G	A	36	0.083	33	36.424	3.816	3	36.333	1.155	32	3	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--3	chrX:151896220	G	A	76	0.026	74	35.878	5.358	2	41.000	0.000	69	2	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--4	chrX:151896220	G	A	16	0.062	15	35.333	6.067	1	37.000	0.000	14	1	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--5	chrX:151896220	G	A	25	0.080	23	36.130	5.084	2	35.500	0.707	22	2	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--6	chrX:151896220	G	NA	18	0	18	35.611	4.500	0	0	0	17	0	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--GL	chrX:151896220	G	NA	73	0	73	36.027	4.010	0	0	0	70	0	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--1	chrX:151896406	A	G	27	0.185	22	35.591	4.194	5	36.400	1.949	20	5	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--2	chrX:151896406	A	G	41	0.049	38	34.000	5.937	2	32.500	6.364	32	1	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--3	chrX:151896406	A	G	111	0.018	109	36.294	4.250	2	37.000	0.000	103	2	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--4	chrX:151896406	A	NA	15	0	15	34.800	3.629	0	0	0	15	0	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--5	chrX:151896406	A	G	40	0.050	38	35.000	6.401	2	34.000	4.243	35	2	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--6	chrX:151896406	A	G	20	0.150	17	36.118	3.407	3	28.000	15.588	17	2	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--GL	chrX:151896406	A	NA	94	0	94	37.181	3.279	0	0	0	94	0	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--1	chrX:151896643	C	G	94	0.181	77	36.571	3.651	17	36.706	1.404	73	17	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--2	chrX:151896643	C	G	128	0.211	100	37.120	3.033	27	36.889	1.281	99	27	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--3	chrX:151896643	C	G	309	0.058	291	36.976	4.232	18	37.222	1.396	279	18	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--4	chrX:151896643	C	G	49	0.082	45	37.311	2.494	4	36.750	1.258	45	4	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--5	chrX:151896643	C	G	114	0.114	101	36.050	4.337	13	37.615	1.502	94	13	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--6	chrX:151896643	C	G	69	0.145	59	36.407	4.090	10	37.200	1.476	57	10	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--GL	chrX:151896643	C	NA	289	0	289	37.017	3.858	0	0	0	277	0	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--1	chrX:151896644	A	T	94	0.181	76	36.579	3.917	17	36.706	1.611	73	17	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--2	chrX:151896644	A	T	128	0.219	100	37.060	3.104	28	36.036	2.134	98	28	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--3	chrX:151896644	A	T	309	0.058	291	36.649	4.569	18	36.667	1.879	276	18	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--4	chrX:151896644	A	T	49	0.082	45	36.911	2.930	4	36.250	1.500	43	4	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--5	chrX:151896644	A	T	113	0.115	100	36.120	3.751	13	37.231	1.363	93	13	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--6	chrX:151896644	A	T	69	0.145	59	36.407	3.913	10	36.700	1.889	57	10	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--GL	chrX:151896644	A	NA	286	0	284	36.496	4.946	0	0	0	270	0	CSAG4	ncRNA_exonic	NA
MB_Group4_T1--1	chrX:151896836	C	T	42	0.190	34	39.176	3.307	8	35.750	8.155	33	7	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--2	chrX:151896836	C	T	57	0.140	49	38.633	4.480	8	38.125	1.642	47	8	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--3	chrX:151896836	C	T	192	0.042	183	37.754	3.836	8	36.625	2.722	175	8	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--4	chrX:151896836	C	T	29	0.034	28	38.321	3.672	1	41.000	0.000	27	1	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--5	chrX:151896836	C	T	59	0.051	56	38.464	2.997	3	36.333	1.155	55	3	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--6	chrX:151896836	C	T	25	0.080	23	39.087	2.503	2	37.000	0.000	23	2	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--GL	chrX:151896836	C	NA	136	0	136	38.118	3.091	0	0	0	135	0	CSAG4	ncRNA_intronic	NA
MB_Group4_T1--1	chrX:70361629	G	A	69	0.464	37	35.811	4.345	32	34.625	4.930	35	31	MED12	intronic	NA
MB_Group4_T1--2	chrX:70361629	G	A	71	0.366	45	36.422	3.696	26	34.808	2.530	43	25	MED12	intronic	NA
MB_Group4_T1--3	chrX:70361629	G	A	205	0.039	197	37.508	4.218	8	35.500	1.690	189	8	MED12	intronic	NA
MB_Group4_T1--4	chrX:70361629	G	A	24	0.375	15	36.467	4.291	9	34.333	3.428	14	8	MED12	intronic	NA
MB_Group4_T1--5	chrX:70361629	G	A	174	0.155	147	36.469	5.469	27	34.889	2.407	134	27	MED12	intronic	NA
MB_Group4_T1--6	chrX:70361629	G	A	21	0.048	20	32.500	8.575	1	37.000	0.000	15	1	MED12	intronic	NA
MB_Group4_T1--GL	chrX:70361629	G	NA	195	0	195	37.221	4.310	0	0	0	185	0	MED12	intronic	NA
MB_Group4_T1--1	chrX:70361630	G	T	70	0.471	36	35.111	6.409	33	35.697	4.902	33	32	MED12	intronic	NA
MB_Group4_T1--2	chrX:70361630	G	T	73	0.356	47	36.447	3.425	26	35.538	2.267	44	26	MED12	intronic	NA
MB_Group4_T1--3	chrX:70361630	G	T	212	0.038	202	37.406	4.785	8	35.625	2.446	195	8	MED12	intronic	NA
MB_Group4_T1--4	chrX:70361630	G	T	25	0.360	16	36.688	4.332	9	36.333	1.000	15	9	MED12	intronic	NA
MB_Group4_T1--5	chrX:70361630	G	T	174	0.167	141	36.738	5.410	29	35.586	3.030	125	27	MED12	intronic	NA
MB_Group4_T1--6	chrX:70361630	G	T	21	0.048	18	36.111	4.523	1	35.000	0.000	16	1	MED12	intronic	NA
MB_Group4_T1--GL	chrX:70361630	G	NA	200	0	200	37.260	3.866	0	0	0	191	0	MED12	intronic	NA
MB_Group4_T2--1	10:102588585	A	C	15	0.067	14	36.357	3.455	1	37.000	0.000	14	1	PAX2	UTR3	NA
MB_Group4_T2--2	10:102588585	A	C	14	0.143	12	35.333	3.085	2	33.500	10.607	12	1	PAX2	UTR3	NA
MB_Group4_T2--3	10:102588585	A	C	27	0.259	20	36.550	5.073	7	33.571	2.225	18	7	PAX2	UTR3	NA
MB_Group4_T2--4	10:102588585	A	C	21	0.095	19	38.316	4.151	2	31.500	0.707	18	2	PAX2	UTR3	NA
MB_Group4_T2--5	10:102588585	A	C	37	0.135	32	37.375	5.302	5	35.800	4.604	30	5	PAX2	UTR3	NA
MB_Group4_T2--6	10:102588585	A	C	19	0.053	18	36.833	9.212	1	38.000	0.000	17	1	PAX2	UTR3	NA
MB_Group4_T2--7	10:102588585	A	NA	19	0	19	36.105	9.463	0	0	0	17	0	PAX2	UTR3	NA
MB_Group4_T2--8	10:102588585	A	C	22	0.045	21	35.905	5.458	1	37.000	0.000	19	1	PAX2	UTR3	NA
MB_Group4_T2--9	10:102588585	A	C	27	0.111	24	36.125	8.279	3	34.333	1.155	22	3	PAX2	UTR3	NA
MB_Group4_T2--GL	10:102588585	A	NA	33	0	33	36.970	5.126	0	0	0	32	0	PAX2	UTR3	NA
MB_Group4_T2--1	10:105799558	A	NA	10	0	10	35.600	3.239	0	0	0	10	0	COL17A1	intronic	NA
MB_Group4_T2--2	10:105799558	A	G	13	0.231	9	27.667	15.207	3	32.333	2.309	6	3	COL17A1	intronic	NA
MB_Group4_T2--3	10:105799558	A	NA	33	0	31	34.968	7.578	0	0	0	27	0	COL17A1	intronic	NA
MB_Group4_T2--4	10:105799558	A	NA	25	0	24	35.750	6.024	0	0	0	22	0	COL17A1	intronic	NA
MB_Group4_T2--5	10:105799558	A	G	35	0.057	33	33.758	8.650	2	32.000	2.828	28	2	COL17A1	intronic	NA
MB_Group4_T2--6	10:105799558	A	NA	18	0	16	36.625	4.815	0	0	0	14	0	COL17A1	intronic	NA
MB_Group4_T2--7	10:105799558	A	NA	17	0	16	33.375	10.275	0	0	0	13	0	COL17A1	intronic	NA
MB_Group4_T2--8	10:105799558	A	NA	26	0	26	30.231	11.315	0	0	0	18	0	COL17A1	intronic	NA
MB_Group4_T2--9	10:105799558	A	NA	19	0	19	33.842	8.461	0	0	0	17	0	COL17A1	intronic	NA
MB_Group4_T2--GL	10:105799558	A	NA	35	0	35	34.714	5.983	0	0	0	31	0	COL17A1	intronic	NA
MB_Group4_T2--1	10:11503546	A	NA	25	0	25	35.600	5.888	0	0	0	22	0	USP6NL	UTR3	NA
MB_Group4_T2--2	10:11503546	A	C	34	0.059	32	35.906	5.366	2	33.000	4.243	30	2	USP6NL	UTR3	NA
MB_Group4_T2--3	10:11503546	A	C	39	0.026	38	36.895	5.119	1	34.000	0.000	35	1	USP6NL	UTR3	NA
MB_Group4_T2--4	10:11503546	A	C	28	0.036	27	35.741	8.351	1	34.000	0.000	25	1	USP6NL	UTR3	NA
MB_Group4_T2--5	10:11503546	A	NA	22	0	22	33.409	10.262	0	0	0	18	0	USP6NL	UTR3	NA
MB_Group4_T2--6	10:11503546	A	C	23	0.043	22	34.545	8.852	1	34.000	0.000	18	1	USP6NL	UTR3	NA
MB_Group4_T2--7	10:11503546	A	NA	23	0	23	36.696	5.834	0	0	0	21	0	USP6NL	UTR3	NA
MB_Group4_T2--8	10:11503546	A	C	38	0.158	31	37.000	3.376	6	35.500	1.643	30	6	USP6NL	UTR3	NA
MB_Group4_T2--9	10:11503546	A	NA	22	0	22	36.227	8.083	0	0	0	21	0	USP6NL	UTR3	NA
MB_Group4_T2--GL	10:11503546	A	NA	41	0	41	37.854	3.328	0	0	0	40	0	USP6NL	UTR3	NA
MB_Group4_T2--1	10:36812324	A	NA	142	0	141	37.929	4.605	0	0	0	136	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--2	10:36812324	A	NA	114	0	114	37.974	5.244	0	0	0	108	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--3	10:36812324	A	NA	204	0	203	38.512	3.598	0	0	0	200	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--4	10:36812324	A	NA	182	0	182	38.676	3.700	0	0	0	176	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--5	10:36812324	A	NA	202	0	202	38.366	4.307	0	0	0	196	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--6	10:36812324	A	G	140	0.150	119	37.076	7.465	21	38.238	2.606	109	21	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--7	10:36812324	A	NA	180	0	179	38.844	3.676	0	0	0	174	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--8	10:36812324	A	NA	167	0	167	38.102	4.790	0	0	0	161	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--9	10:36812324	A	NA	136	0	136	38.228	4.140	0	0	0	132	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--GL	10:36812324	A	NA	196	0	196	38.515	4.637	0	0	0	190	0	PCAT5(dist=722476),ANKRD30A(dist=602461)	intergenic	NA
MB_Group4_T2--1	10:47133066	C	A	51	0.118	45	30.356	10.131	6	37.833	4.535	28	6	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--2	10:47133066	C	NA	33	0	33	29.121	12.359	0	0	0	23	0	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--3	10:47133066	C	NA	60	0	58	28.586	12.452	0	0	0	35	0	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--4	10:47133066	C	A	49	0.122	43	32.953	9.957	6	33.833	15.626	35	5	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--5	10:47133066	C	A	51	0.078	47	25.957	13.555	4	39.000	2.828	26	4	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--6	10:47133066	C	A	43	0.070	40	26.675	11.396	3	37.000	4.000	21	3	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--7	10:47133066	C	A	38	0.211	30	32.233	11.063	8	33.125	12.878	23	7	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--8	10:47133066	C	A	53	0.075	48	31.938	11.497	4	25.250	16.820	41	2	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--9	10:47133066	C	NA	41	0	38	30.237	11.469	0	0	0	26	0	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--GL	10:47133066	C	NA	50	0	48	31.042	11.787	0	0	0	36	0	LINC00842	ncRNA_intronic	NA
MB_Group4_T2--1	10:98778683	C	NA	10	0	10	32.900	7.810	0	0	0	9	0	SLIT1	intronic	NA
MB_Group4_T2--2	10:98778683	C	NA	16	0	16	31.938	14.055	0	0	0	13	0	SLIT1	intronic	NA
MB_Group4_T2--3	10:98778683	C	NA	36	0	36	37.139	4.740	0	0	0	34	0	SLIT1	intronic	NA
MB_Group4_T2--4	10:98778683	C	NA	20	0	20	36.900	5.025	0	0	0	18	0	SLIT1	intronic	NA
MB_Group4_T2--5	10:98778683	C	NA	30	0	30	36.133	9.797	0	0	0	27	0	SLIT1	intronic	NA
MB_Group4_T2--6	10:98778683	C	NA	26	0	26	34.923	7.766	0	0	0	24	0	SLIT1	intronic	NA
MB_Group4_T2--7	10:98778683	C	NA	28	0	28	32.714	11.907	0	0	0	23	0	SLIT1	intronic	NA
MB_Group4_T2--8	10:98778683	C	A	17	0.294	12	35.083	7.204	5	35.200	5.119	10	4	SLIT1	intronic	NA
MB_Group4_T2--9	10:98778683	C	NA	23	0	23	36.087	8.056	0	0	0	22	0	SLIT1	intronic	NA
MB_Group4_T2--GL	10:98778683	C	NA	34	0	34	37.588	4.243	0	0	0	33	0	SLIT1	intronic	NA
MB_Group4_T2--1	11:1081378	G	A	27	0.296	19	32.053	9.003	8	37.375	2.925	14	8	MUC2	intronic	NA
MB_Group4_T2--2	11:1081378	G	A	22	0.273	16	32.625	9.179	6	35.667	2.422	14	6	MUC2	intronic	NA
MB_Group4_T2--3	11:1081378	G	A	23	0.174	19	33.842	6.167	4	36.500	1.732	16	4	MUC2	intronic	NA
MB_Group4_T2--4	11:1081378	G	A	25	0.120	22	36.682	5.304	3	38.667	1.528	21	3	MUC2	intronic	NA
MB_Group4_T2--5	11:1081378	G	A	30	0.133	26	35.346	5.067	4	24.750	15.650	24	2	MUC2	intronic	NA
MB_Group4_T2--6	11:1081378	G	A	18	0.278	13	24.692	16.620	5	30.200	8.643	7	3	MUC2	intronic	NA
MB_Group4_T2--7	11:1081378	G	NA	27	0	27	33.481	5.556	0	0	0	22	0	MUC2	intronic	NA
MB_Group4_T2--8	11:1081378	G	A	22	0.136	19	34.368	5.069	3	38.333	4.619	15	3	MUC2	intronic	NA
MB_Group4_T2--9	11:1081378	G	A	14	0.071	13	34.692	5.936	1	39.000	0.000	11	1	MUC2	intronic	NA
MB_Group4_T2--GL	11:1081378	G	NA	47	0	46	34.957	6.331	0	0	0	42	0	MUC2	intronic	NA
MB_Group4_T2--1	11:130780274	A	C	102	0.029	40	37.225	5.447	3	31.667	3.215	38	2	SNX19	intronic	NA
MB_Group4_T2--2	11:130780274	A	C	91	0.055	45	34.756	9.777	5	33.400	2.510	40	4	SNX19	intronic	NA
MB_Group4_T2--3	11:130780274	A	C	103	0.049	34	35.882	9.969	5	30.000	7.141	31	3	SNX19	intronic	NA
MB_Group4_T2--4	11:130780274	A	C	80	0.075	24	36.750	8.269	6	32.833	4.834	22	5	SNX19	intronic	NA
MB_Group4_T2--5	11:130780274	A	C	84	0.060	18	37.722	9.125	5	31.200	7.430	17	4	SNX19	intronic	NA
MB_Group4_T2--6	11:130780274	A	C	92	0.043	34	35.647	9.380	4	31.500	2.887	31	2	SNX19	intronic	NA
MB_Group4_T2--7	11:130780274	A	C	75	0.027	22	38.000	3.352	2	34.500	0.707	22	2	SNX19	intronic	NA
MB_Group4_T2--8	11:130780274	A	C	105	0.048	40	36.475	8.779	5	32.800	3.493	37	4	SNX19	intronic	NA
MB_Group4_T2--9	11:130780274	A	NA	70	0	28	37.250	7.427	0	0	0	27	0	SNX19	intronic	NA
MB_Group4_T2--GL	11:130780274	A	NA	83	0	59	35.763	9.806	0	0	0	54	0	SNX19	intronic	NA
MB_Group4_T2--1	11:26582237	A	NA	37	0	37	38.297	2.559	0	0	0	37	0	MUC15	UTR3	NA
MB_Group4_T2--2	11:26582237	A	NA	31	0	31	38.677	2.135	0	0	0	31	0	MUC15	UTR3	NA
MB_Group4_T2--3	11:26582237	A	NA	61	0	61	37.115	6.553	0	0	0	58	0	MUC15	UTR3	NA
MB_Group4_T2--4	11:26582237	A	NA	29	0	29	39.241	2.573	0	0	0	29	0	MUC15	UTR3	NA
MB_Group4_T2--5	11:26582237	A	NA	27	0	27	38.704	5.090	0	0	0	26	0	MUC15	UTR3	NA
MB_Group4_T2--6	11:26582237	A	G	34	0.029	33	38.606	3.929	1	40.000	0.000	31	1	MUC15	UTR3	NA
MB_Group4_T2--7	11:26582237	A	NA	37	0	37	35.865	9.528	0	0	0	33	0	MUC15	UTR3	NA
MB_Group4_T2--8	11:26582237	A	G	43	0.209	34	37.824	4.296	9	38.333	3.202	31	9	MUC15	UTR3	NA
MB_Group4_T2--9	11:26582237	A	NA	17	0	17	37.588	5.001	0	0	0	16	0	MUC15	UTR3	NA
MB_Group4_T2--GL	11:26582237	A	NA	40	0	40	39.425	2.735	0	0	0	40	0	MUC15	UTR3	NA
MB_Group4_T2--1	1:153066244	A	NA	70	0	70	38.057	5.255	0	0	0	68	0	SPRR2E	UTR5	NA
MB_Group4_T2--2	1:153066244	A	NA	92	0	92	36.565	6.463	0	0	0	84	0	SPRR2E	UTR5	NA
MB_Group4_T2--3	1:153066244	A	NA	124	0	124	38.185	4.211	0	0	0	120	0	SPRR2E	UTR5	NA
MB_Group4_T2--4	1:153066244	A	NA	121	0	121	36.818	6.752	0	0	0	115	0	SPRR2E	UTR5	NA
MB_Group4_T2--5	1:153066244	A	NA	135	0	135	37.644	5.651	0	0	0	128	0	SPRR2E	UTR5	NA
MB_Group4_T2--6	1:153066244	A	G	133	0.030	129	37.574	5.841	4	39.250	2.363	123	4	SPRR2E	UTR5	NA
MB_Group4_T2--7	1:153066244	A	NA	103	0	103	38.301	5.213	0	0	0	97	0	SPRR2E	UTR5	NA
MB_Group4_T2--8	1:153066244	A	G	139	0.209	110	37.309	5.339	29	38.759	2.614	105	29	SPRR2E	UTR5	NA
MB_Group4_T2--9	1:153066244	A	NA	100	0	100	38.860	2.689	0	0	0	99	0	SPRR2E	UTR5	NA
MB_Group4_T2--GL	1:153066244	A	NA	117	0	117	37.821	6.456	0	0	0	110	0	SPRR2E	UTR5	NA
MB_Group4_T2--1	11:70016945	T	A	29	0.069	7	34.000	6.506	2	33.500	0.707	5	2	ANO1	intronic	NA
MB_Group4_T2--2	11:70016945	T	A	36	0.056	7	36.429	3.409	2	32.500	2.121	7	2	ANO1	intronic	NA
MB_Group4_T2--3	11:70016945	T	A	48	0.021	4	38.000	2.944	1	35.000	0.000	4	1	ANO1	intronic	NA
MB_Group4_T2--4	11:70016945	T	A	46	0.087	4	27.750	17.481	4	31.750	1.500	3	4	ANO1	intronic	NA
MB_Group4_T2--5	11:70016945	T	A	42	0.095	2	34.000	4.243	4	33.250	1.500	2	4	ANO1	intronic	NA
MB_Group4_T2--6	11:70016945	T	A	34	0.029	10	36.400	3.836	1	34.000	0.000	9	1	ANO1	intronic	NA
MB_Group4_T2--7	11:70016945	T	A	39	0.051	2	37.500	3.536	2	32.500	2.121	2	2	ANO1	intronic	NA
MB_Group4_T2--8	11:70016945	T	A	37	0.108	10	27.200	14.250	4	32.000	2.000	6	4	ANO1	intronic	NA
MB_Group4_T2--9	11:70016945	T	A	16	0.188	3	34.667	10.970	3	31.333	4.619	2	2	ANO1	intronic	NA
MB_Group4_T2--GL	11:70016945	T	NA	67	0	35	35.571	3.681	0	0	0	33	0	ANO1	intronic	NA
MB_Group4_T2--1	11:88245427	G	T	41	0.122	16	35.688	10.045	5	37.400	2.702	14	5	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--2	11:88245427	G	T	69	0.029	28	38.286	4.569	2	33.500	10.607	26	1	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--3	11:88245427	G	T	86	0.035	14	38.357	4.254	3	31.333	9.866	13	2	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--4	11:88245427	G	T	80	0.037	5	38.200	2.775	3	38.333	2.082	5	3	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--5	11:88245427	G	T	68	0.044	13	38.462	3.307	3	25.000	20.075	13	2	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--6	11:88245427	G	T	78	0.038	25	37.760	5.238	3	38.333	2.082	22	3	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--7	11:88245427	G	T	56	0.054	16	38.188	3.526	3	37.333	2.887	16	3	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--8	11:88245427	G	T	70	0.043	24	39.042	2.851	3	37.000	2.646	23	3	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--9	11:88245427	G	T	79	0.051	23	39.522	1.755	4	39.750	1.500	23	4	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--GL	11:88245427	G	NA	85	0	62	37.500	7.430	0	0	0	58	0	GRM5-AS1	ncRNA_exonic	NA
MB_Group4_T2--1	1:205072996	C	T	41	0.220	32	37.312	3.987	9	32.778	10.462	31	7	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--2	1:205072996	C	T	42	0.357	27	35.333	7.805	15	36.267	3.058	25	14	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--3	1:205072996	C	T	66	0.530	31	38.774	3.964	35	36.743	5.204	29	33	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--4	1:205072996	C	T	65	0.538	30	38.833	2.520	35	36.771	4.380	30	32	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--5	1:205072996	C	T	66	0.500	33	37.273	4.411	33	35.727	7.191	32	30	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--6	1:205072996	C	T	68	0.412	39	37.718	3.516	28	36.786	2.807	38	28	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--7	1:205072996	C	T	64	0.469	34	37.588	4.046	30	36.800	4.238	32	28	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--8	1:205072996	C	T	80	0.225	61	38.131	3.884	18	33.944	9.576	58	16	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--9	1:205072996	C	T	62	0.355	39	36.897	7.451	22	36.091	8.129	36	21	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	1:205072996	C	NA	76	0	75	37.147	5.927	0	0	0	71	0	RBBP5	exonic	nonsynonymous_SNV
MB_Group4_T2--1	12:109680329	G	T	92	0.196	74	35.784	8.035	18	34.444	9.269	69	15	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--2	12:109680329	G	T	135	0.252	101	37.297	4.820	34	33.735	8.461	97	30	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--3	12:109680329	G	T	212	0.241	161	36.261	6.856	51	35.588	6.721	144	46	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--4	12:109680329	G	T	178	0.185	145	37.069	5.038	33	35.818	4.851	136	31	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--5	12:109680329	G	T	203	0.222	158	36.842	5.406	45	34.222	7.157	148	40	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--6	12:109680329	G	T	110	0.273	80	36.312	6.490	30	34.833	9.948	73	25	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--7	12:109680329	G	T	191	0.236	146	37.130	4.486	45	36.778	4.461	141	44	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--8	12:109680329	G	T	133	0.256	99	36.081	7.528	34	36.559	4.047	91	31	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--9	12:109680329	G	T	109	0.193	88	38.295	3.326	21	36.000	8.944	86	19	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	12:109680329	G	NA	182	0	182	37.599	4.521	0	0	0	175	0	ACACB	exonic	nonsynonymous_SNV
MB_Group4_T2--1	12:123199399	G	C	175	0.194	141	35.780	6.906	34	35.088	7.137	125	30	HCAR3	UTR3	NA
MB_Group4_T2--2	12:123199399	G	NA	234	0	234	35.611	7.007	0	0	0	210	0	HCAR3	UTR3	NA
MB_Group4_T2--3	12:123199399	G	C	283	0.046	269	36.465	6.613	13	38.692	2.323	247	13	HCAR3	UTR3	NA
MB_Group4_T2--4	12:123199399	G	C	260	0.035	251	36.195	7.452	9	38.000	2.121	229	9	HCAR3	UTR3	NA
MB_Group4_T2--5	12:123199399	G	NA	270	0	270	36.985	5.467	0	0	0	251	0	HCAR3	UTR3	NA
MB_Group4_T2--6	12:123199399	G	NA	172	0	172	37.285	6.269	0	0	0	165	0	HCAR3	UTR3	NA
MB_Group4_T2--7	12:123199399	G	NA	324	0	324	35.972	7.058	0	0	0	297	0	HCAR3	UTR3	NA
MB_Group4_T2--8	12:123199399	G	NA	215	0	215	36.698	6.711	0	0	0	197	0	HCAR3	UTR3	NA
MB_Group4_T2--9	12:123199399	G	NA	186	0	186	36.237	6.618	0	0	0	171	0	HCAR3	UTR3	NA
MB_Group4_T2--GL	12:123199399	G	NA	365	0	365	37.307	5.902	0	0	0	345	0	HCAR3	UTR3	NA
MB_Group4_T2--1	12:44189120	G	A	187	0.219	146	38.452	4.151	41	39.634	1.685	140	41	TWF1	UTR3	NA
MB_Group4_T2--2	12:44189120	G	A	195	0.231	150	38.140	4.377	45	38.289	3.739	147	43	TWF1	UTR3	NA
MB_Group4_T2--3	12:44189120	G	A	322	0.220	251	38.554	4.595	71	39.577	2.734	243	70	TWF1	UTR3	NA
MB_Group4_T2--4	12:44189120	G	A	245	0.216	192	38.880	4.183	53	39.642	1.851	186	53	TWF1	UTR3	NA
MB_Group4_T2--5	12:44189120	G	A	296	0.216	231	38.654	3.676	64	38.969	2.720	225	64	TWF1	UTR3	NA
MB_Group4_T2--6	12:44189120	G	A	214	0.168	178	38.742	3.770	36	38.222	6.702	171	35	TWF1	UTR3	NA
MB_Group4_T2--7	12:44189120	G	A	241	0.158	203	38.931	3.283	38	38.500	5.092	197	36	TWF1	UTR3	NA
MB_Group4_T2--8	12:44189120	G	A	249	0.088	227	38.436	4.999	22	39.364	2.718	217	22	TWF1	UTR3	NA
MB_Group4_T2--9	12:44189120	G	A	208	0.125	182	38.918	5.473	26	40.269	1.313	178	26	TWF1	UTR3	NA
MB_Group4_T2--GL	12:44189120	G	NA	184	0	184	38.897	3.527	0	0	0	181	0	TWF1	UTR3	NA
MB_Group4_T2--1	14:58832935	G	T	76	0.197	60	38.100	4.758	15	31.933	13.085	59	12	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--2	14:58832935	G	T	81	0.185	66	38.136	4.213	15	36.467	8.096	64	14	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--3	14:58832935	G	T	127	0.205	100	39.290	2.660	26	37.538	4.329	98	25	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--4	14:58832935	G	T	94	0.245	71	38.099	3.914	23	39.304	1.820	69	23	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--5	14:58832935	G	T	96	0.229	73	38.479	3.428	22	38.955	3.214	73	21	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--6	14:58832935	G	T	83	0.361	53	38.340	5.824	30	37.967	6.105	52	29	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--7	14:58832935	G	T	92	0.109	82	37.512	7.059	10	39.700	2.058	76	10	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--8	14:58832935	G	T	89	0.146	76	38.776	3.747	13	38.769	3.140	73	13	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--9	14:58832935	G	T	89	0.202	71	39.423	2.418	18	38.944	4.007	71	17	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	14:58832935	G	NA	91	0	91	38.396	5.483	0	0	0	88	0	ARID4A	exonic	nonsynonymous_SNV
MB_Group4_T2--1	16:14334479	C	A	54	0.056	21	36.524	6.234	3	36.333	2.082	19	3	MKL2	intronic	NA
MB_Group4_T2--2	16:14334479	C	A	41	0.098	21	35.524	5.465	4	38.250	1.500	18	4	MKL2	intronic	NA
MB_Group4_T2--3	16:14334479	C	A	57	0.088	15	37.467	2.997	5	28.400	14.843	15	4	MKL2	intronic	NA
MB_Group4_T2--4	16:14334479	C	A	59	0.051	33	35.667	8.305	3	34.000	3.606	31	3	MKL2	intronic	NA
MB_Group4_T2--5	16:14334479	C	A	76	0.039	31	36.387	5.084	3	36.333	2.517	29	3	MKL2	intronic	NA
MB_Group4_T2--6	16:14334479	C	NA	60	0	30	34.467	8.452	0	0	0	24	0	MKL2	intronic	NA
MB_Group4_T2--7	16:14334479	C	A	45	0.067	18	34.556	8.919	3	31.667	4.726	17	2	MKL2	intronic	NA
MB_Group4_T2--8	16:14334479	C	A	48	0.042	26	37.538	5.961	2	35.000	5.657	24	2	MKL2	intronic	NA
MB_Group4_T2--9	16:14334479	C	A	37	0.081	7	40.143	1.464	3	36.667	2.517	7	3	MKL2	intronic	NA
MB_Group4_T2--GL	16:14334479	C	NA	70	0	40	36.925	5.146	0	0	0	38	0	MKL2	intronic	NA
MB_Group4_T2--1	16:14334480	A	T	56	0.071	22	35.409	7.781	4	36.500	2.082	18	4	MKL2	intronic	NA
MB_Group4_T2--2	16:14334480	A	T	40	0.100	20	35.750	6.231	4	37.000	2.449	18	4	MKL2	intronic	NA
MB_Group4_T2--3	16:14334480	A	T	57	0.088	16	35.062	9.255	5	26.400	14.046	15	3	MKL2	intronic	NA
MB_Group4_T2--4	16:14334480	A	T	57	0.070	30	34.933	8.863	4	34.250	3.403	26	4	MKL2	intronic	NA
MB_Group4_T2--5	16:14334480	A	T	77	0.052	31	35.290	8.549	4	35.500	1.732	29	4	MKL2	intronic	NA
MB_Group4_T2--6	16:14334480	A	NA	60	0	30	34.467	7.422	0	0	0	25	0	MKL2	intronic	NA
MB_Group4_T2--7	16:14334480	A	T	45	0.067	18	34.667	9.120	3	28.000	9.165	16	2	MKL2	intronic	NA
MB_Group4_T2--8	16:14334480	A	T	46	0.043	24	38.208	4.539	2	33.500	3.536	22	2	MKL2	intronic	NA
MB_Group4_T2--9	16:14334480	A	T	38	0.079	8	38.875	2.800	3	36.667	2.517	8	3	MKL2	intronic	NA
MB_Group4_T2--GL	16:14334480	A	NA	71	0	41	36.805	3.932	0	0	0	40	0	MKL2	intronic	NA
MB_Group4_T2--1	16:20361093	T	C	21	0.048	20	36.750	5.665	1	36.000	0.000	18	1	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--2	16:20361093	T	C	42	0.048	40	36.950	4.657	2	36.500	3.536	38	2	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--3	16:20361093	T	C	58	0.017	57	36.667	8.307	1	38.000	0.000	53	1	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--4	16:20361093	T	C	49	0.041	47	36.234	6.847	2	36.500	3.536	44	2	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--5	16:20361093	T	C	51	0.039	49	36.878	6.277	2	36.000	2.828	46	2	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--6	16:20361093	T	NA	29	0	29	37.414	7.351	0	0	0	28	0	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--7	16:20361093	T	C	43	0.116	38	37.395	3.977	5	36.400	3.715	36	5	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--8	16:20361093	T	C	39	0.051	36	38.000	3.423	2	23.500	21.920	34	1	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--9	16:20361093	T	C	36	0.167	30	37.133	3.491	6	35.500	3.987	30	6	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	16:20361093	T	NA	60	0	60	38.233	4.192	0	0	0	57	0	UMOD	exonic	nonsynonymous_SNV
MB_Group4_T2--1	16:31367137	C	T	16	0.625	5	34.600	2.302	10	35.200	3.938	5	8	ITGAX	intronic	NA
MB_Group4_T2--2	16:31367137	C	T	16	0.500	8	32.750	12.691	8	34.125	7.240	7	7	ITGAX	intronic	NA
MB_Group4_T2--3	16:31367137	C	T	28	0.464	15	30.333	12.385	13	32.000	8.206	11	11	ITGAX	intronic	NA
MB_Group4_T2--4	16:31367137	C	T	13	0.538	6	37.000	4.195	7	35.714	4.271	6	7	ITGAX	intronic	NA
MB_Group4_T2--5	16:31367137	C	T	25	0.560	11	34.091	8.757	14	36.286	4.177	9	13	ITGAX	intronic	NA
MB_Group4_T2--6	16:31367137	C	T	19	0.368	12	31.833	10.504	7	33.857	12.116	9	6	ITGAX	intronic	NA
MB_Group4_T2--7	16:31367137	C	T	24	0.333	16	34.188	9.793	8	34.250	3.284	14	7	ITGAX	intronic	NA
MB_Group4_T2--8	16:31367137	C	T	16	0.250	12	32.583	10.300	4	34.750	6.397	9	3	ITGAX	intronic	NA
MB_Group4_T2--9	16:31367137	C	T	13	0.385	8	36.500	5.503	5	33.600	5.459	7	4	ITGAX	intronic	NA
MB_Group4_T2--GL	16:31367137	C	NA	49	0	49	35.061	8.680	0	0	0	45	0	ITGAX	intronic	NA
MB_Group4_T2--1	16:5106111	G	A	37	0.135	32	34.688	7.937	5	37.200	2.588	28	5	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--2	16:5106111	G	NA	32	0	32	35.844	4.939	0	0	0	29	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--3	16:5106111	G	NA	37	0	37	36.216	6.696	0	0	0	35	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--4	16:5106111	G	NA	28	0	28	37.643	3.861	0	0	0	27	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--5	16:5106111	G	NA	51	0	50	35.920	7.079	0	0	0	45	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--6	16:5106111	G	NA	30	0	30	37.733	3.877	0	0	0	29	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--7	16:5106111	G	NA	47	0	46	37.109	6.294	0	0	0	44	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--8	16:5106111	G	NA	16	0	16	37.688	3.177	0	0	0	16	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--9	16:5106111	G	NA	29	0	29	36.069	7.611	0	0	0	27	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	16:5106111	G	NA	58	0	58	35.707	6.880	0	0	0	55	0	C16orf89	exonic	nonsynonymous_SNV
MB_Group4_T2--1	17:21903195	G	C	16	0.250	12	37.583	2.843	4	35.500	3.873	12	4	FLJ36000	upstream	NA
MB_Group4_T2--2	17:21903195	G	C	34	0.029	33	36.303	4.035	1	41.000	0.000	30	1	FLJ36000	upstream	NA
MB_Group4_T2--3	17:21903195	G	C	20	0.100	18	37.500	3.053	2	38.500	3.536	18	2	FLJ36000	upstream	NA
MB_Group4_T2--4	17:21903195	G	C	29	0.138	25	35.440	7.171	4	38.500	3.000	22	4	FLJ36000	upstream	NA
MB_Group4_T2--5	17:21903195	G	C	37	0.108	33	36.515	6.369	4	33.500	6.245	31	3	FLJ36000	upstream	NA
MB_Group4_T2--6	17:21903195	G	C	22	0.091	20	37.400	3.926	2	36.500	4.950	19	2	FLJ36000	upstream	NA
MB_Group4_T2--7	17:21903195	G	C	44	0.159	37	36.486	6.678	7	37.714	2.870	35	7	FLJ36000	upstream	NA
MB_Group4_T2--8	17:21903195	G	C	18	0.111	16	34.125	10.164	2	38.000	4.243	14	2	FLJ36000	upstream	NA
MB_Group4_T2--9	17:21903195	G	C	22	0.182	18	36.944	4.633	4	39.750	1.258	17	4	FLJ36000	upstream	NA
MB_Group4_T2--GL	17:21903195	G	NA	34	0	34	36.647	6.614	0	0	0	33	0	FLJ36000	upstream	NA
MB_Group4_T2--1	17:45900774	T	C	65	0.062	38	37.184	4.404	4	36.750	2.630	35	4	MRPL10	UTR3	NA
MB_Group4_T2--2	17:45900774	T	NA	67	0	39	38.615	3.984	0	0	0	38	0	MRPL10	UTR3	NA
MB_Group4_T2--3	17:45900774	T	C	106	0.019	46	39.000	3.204	2	33.500	7.778	45	1	MRPL10	UTR3	NA
MB_Group4_T2--4	17:45900774	T	C	78	0.051	37	37.811	6.666	4	34.500	3.317	36	4	MRPL10	UTR3	NA
MB_Group4_T2--5	17:45900774	T	C	96	0.021	35	38.914	1.652	2	37.500	4.950	35	2	MRPL10	UTR3	NA
MB_Group4_T2--6	17:45900774	T	C	69	0.101	27	38.926	3.269	7	37.571	3.409	27	7	MRPL10	UTR3	NA
MB_Group4_T2--7	17:45900774	T	C	86	0.058	35	38.086	4.494	5	31.800	13.882	34	4	MRPL10	UTR3	NA
MB_Group4_T2--8	17:45900774	T	C	95	0.053	24	39.292	1.922	5	30.000	16.047	24	4	MRPL10	UTR3	NA
MB_Group4_T2--9	17:45900774	T	C	57	0.035	31	38.355	2.799	2	28.000	4.243	31	1	MRPL10	UTR3	NA
MB_Group4_T2--GL	17:45900774	T	NA	66	0	36	38.556	6.843	0	0	0	35	0	MRPL10	UTR3	NA
MB_Group4_T2--1	17:72997364	T	G	31	0.065	29	31.552	8.016	2	34.000	4.243	23	2	CDR2L	intronic	NA
MB_Group4_T2--2	17:72997364	T	G	43	0.116	37	32.216	8.580	5	33.400	1.517	28	5	CDR2L	intronic	NA
MB_Group4_T2--3	17:72997364	T	G	53	0.170	43	32.744	7.027	9	34.889	1.965	33	9	CDR2L	intronic	NA
MB_Group4_T2--4	17:72997364	T	G	50	0.120	44	32.455	6.684	6	30.667	6.772	37	4	CDR2L	intronic	NA
MB_Group4_T2--5	17:72997364	T	G	54	0.111	48	34.333	5.054	6	34.833	2.317	42	6	CDR2L	intronic	NA
MB_Group4_T2--6	17:72997364	T	G	36	0.083	33	32.667	7.423	3	34.000	1.000	26	3	CDR2L	intronic	NA
MB_Group4_T2--7	17:72997364	T	G	33	0.091	30	33.467	6.922	3	34.667	4.041	25	3	CDR2L	intronic	NA
MB_Group4_T2--8	17:72997364	T	G	48	0.208	38	34.737	3.629	10	30.200	11.924	35	8	CDR2L	intronic	NA
MB_Group4_T2--9	17:72997364	T	G	34	0.088	31	32.839	6.890	3	36.333	1.155	27	3	CDR2L	intronic	NA
MB_Group4_T2--GL	17:72997364	T	NA	44	0	44	33.795	6.947	0	0	0	37	0	CDR2L	intronic	NA
MB_Group4_T2--1	19:35842701	G	NA	130	0	130	33.708	7.525	0	0	0	115	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--2	19:35842701	G	NA	114	0	113	32.991	8.814	0	0	0	96	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--3	19:35842701	G	NA	180	0	180	34.978	7.196	0	0	0	161	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--4	19:35842701	G	NA	163	0	163	33.110	9.797	0	0	0	135	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--5	19:35842701	G	NA	180	0	180	34.544	7.360	0	0	0	159	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--6	19:35842701	G	NA	86	0	86	34.605	7.889	0	0	0	74	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--7	19:35842701	G	T	172	0.029	166	33.886	8.279	5	36.000	2.000	147	5	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--8	19:35842701	G	NA	100	0	100	35.520	6.848	0	0	0	93	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--9	19:35842701	G	T	93	0.151	79	36.215	4.311	14	35.571	2.793	75	14	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	19:35842701	G	NA	200	0	198	34.520	7.420	0	0	0	177	0	FFAR1	exonic	nonsynonymous_SNV
MB_Group4_T2--1	19:43672308	G	NA	47	0	47	38.277	4.307	0	0	0	45	0	PSG5	UTR3	NA
MB_Group4_T2--2	19:43672308	G	NA	58	0	58	38.897	4.741	0	0	0	56	0	PSG5	UTR3	NA
MB_Group4_T2--3	19:43672308	G	T	72	0.042	69	39.594	2.110	3	39.667	1.528	68	3	PSG5	UTR3	NA
MB_Group4_T2--4	19:43672308	G	NA	61	0	61	38.820	3.294	0	0	0	60	0	PSG5	UTR3	NA
MB_Group4_T2--5	19:43672308	G	T	52	0.135	45	37.267	6.319	7	40.143	1.215	43	7	PSG5	UTR3	NA
MB_Group4_T2--6	19:43672308	G	NA	71	0	71	37.479	5.039	0	0	0	67	0	PSG5	UTR3	NA
MB_Group4_T2--7	19:43672308	G	NA	42	0	42	38.524	3.542	0	0	0	41	0	PSG5	UTR3	NA
MB_Group4_T2--8	19:43672308	G	NA	73	0	73	39.411	2.837	0	0	0	72	0	PSG5	UTR3	NA
MB_Group4_T2--9	19:43672308	G	NA	54	0	54	39.222	3.051	0	0	0	53	0	PSG5	UTR3	NA
MB_Group4_T2--GL	19:43672308	G	NA	43	0	43	39.395	2.470	0	0	0	42	0	PSG5	UTR3	NA
MB_Group4_T2--1	19:57985950	T	NA	76	0	28	35.750	5.461	0	0	0	24	0	ZNF772	intronic	NA
MB_Group4_T2--2	19:57985950	T	NA	84	0	29	34.862	7.259	0	0	0	26	0	ZNF772	intronic	NA
MB_Group4_T2--3	19:57985950	T	G	99	0.040	34	36.676	6.314	4	37.750	2.986	30	4	ZNF772	intronic	NA
MB_Group4_T2--4	19:57985950	T	G	86	0.023	25	34.600	9.460	2	36.000	7.071	22	2	ZNF772	intronic	NA
MB_Group4_T2--5	19:57985950	T	G	105	0.067	31	35.710	6.991	7	36.286	4.499	30	7	ZNF772	intronic	NA
MB_Group4_T2--6	19:57985950	T	NA	70	0	17	37.412	2.740	0	0	0	17	0	ZNF772	intronic	NA
MB_Group4_T2--7	19:57985950	T	G	86	0.047	24	38.375	2.601	4	34.500	3.873	24	4	ZNF772	intronic	NA
MB_Group4_T2--8	19:57985950	T	G	88	0.057	38	38.342	2.916	5	33.600	2.881	37	5	ZNF772	intronic	NA
MB_Group4_T2--9	19:57985950	T	NA	86	0	31	37.097	6.112	0	0	0	29	0	ZNF772	intronic	NA
MB_Group4_T2--GL	19:57985950	T	NA	82	0	44	38.068	3.996	0	0	0	42	0	ZNF772	intronic	NA
MB_Group4_T2--1	2:128467048	C	NA	27	0	27	37.815	4.876	0	0	0	26	0	WDR33	intronic	NA
MB_Group4_T2--2	2:128467048	C	T	35	0.029	34	34.500	7.751	1	35.000	0.000	27	1	WDR33	intronic	NA
MB_Group4_T2--3	2:128467048	C	T	48	0.062	45	36.356	6.593	3	35.000	3.606	42	3	WDR33	intronic	NA
MB_Group4_T2--4	2:128467048	C	NA	45	0	44	35.455	6.801	0	0	0	40	0	WDR33	intronic	NA
MB_Group4_T2--5	2:128467048	C	T	56	0.196	45	36.089	4.842	11	34.364	4.202	41	10	WDR33	intronic	NA
MB_Group4_T2--6	2:128467048	C	NA	30	0	30	35.967	7.323	0	0	0	28	0	WDR33	intronic	NA
MB_Group4_T2--7	2:128467048	C	NA	45	0	44	37.523	3.825	0	0	0	43	0	WDR33	intronic	NA
MB_Group4_T2--8	2:128467048	C	NA	29	0	29	36.966	4.717	0	0	0	28	0	WDR33	intronic	NA
MB_Group4_T2--9	2:128467048	C	NA	40	0	40	36.850	4.990	0	0	0	37	0	WDR33	intronic	NA
MB_Group4_T2--GL	2:128467048	C	NA	36	0	36	36.306	7.379	0	0	0	34	0	WDR33	intronic	NA
MB_Group4_T2--1	21:40564189	T	A	38	0.132	15	38.133	3.720	5	34.200	4.550	15	4	BRWD1	UTR3	NA
MB_Group4_T2--2	21:40564189	T	A	49	0.020	23	38.087	3.837	1	39.000	0.000	21	1	BRWD1	UTR3	NA
MB_Group4_T2--3	21:40564189	T	A	63	0.048	24	38.167	3.319	3	36.333	4.041	24	3	BRWD1	UTR3	NA
MB_Group4_T2--4	21:40564189	T	A	59	0.017	33	38.121	3.748	1	31.000	0.000	32	1	BRWD1	UTR3	NA
MB_Group4_T2--5	21:40564189	T	A	52	0.019	15	39.200	3.688	1	39.000	0.000	14	1	BRWD1	UTR3	NA
MB_Group4_T2--6	21:40564189	T	A	41	0.049	12	39.917	1.621	2	37.500	4.950	12	2	BRWD1	UTR3	NA
MB_Group4_T2--7	21:40564189	T	A	45	0.044	20	35.950	9.682	2	39.500	0.707	18	2	BRWD1	UTR3	NA
MB_Group4_T2--8	21:40564189	T	A	59	0.034	36	39.472	2.813	2	37.500	4.950	35	2	BRWD1	UTR3	NA
MB_Group4_T2--9	21:40564189	T	A	34	0.059	12	38.250	3.769	2	31.000	8.485	12	1	BRWD1	UTR3	NA
MB_Group4_T2--GL	21:40564189	T	NA	50	0	33	38.879	3.781	0	0	0	31	0	BRWD1	UTR3	NA
MB_Group4_T2--1	21:44433149	T	G	43	0.302	30	38.400	2.896	13	38.231	3.140	30	13	PKNOX1	intronic	NA
MB_Group4_T2--2	21:44433149	T	G	45	0.244	34	37.382	4.619	11	38.545	3.588	32	11	PKNOX1	intronic	NA
MB_Group4_T2--3	21:44433149	T	G	84	0.274	61	38.410	3.523	23	38.174	3.927	59	21	PKNOX1	intronic	NA
MB_Group4_T2--4	21:44433149	T	G	54	0.241	41	39.707	1.778	13	38.615	4.369	41	12	PKNOX1	intronic	NA
MB_Group4_T2--5	21:44433149	T	G	78	0.205	62	38.290	5.812	16	38.438	2.337	59	16	PKNOX1	intronic	NA
MB_Group4_T2--6	21:44433149	T	G	44	0.227	34	39.000	3.542	10	35.700	12.037	32	9	PKNOX1	intronic	NA
MB_Group4_T2--7	21:44433149	T	G	63	0.317	43	38.860	2.883	20	39.950	1.638	43	20	PKNOX1	intronic	NA
MB_Group4_T2--8	21:44433149	T	G	41	0.317	28	38.714	4.099	13	36.462	8.987	26	12	PKNOX1	intronic	NA
MB_Group4_T2--9	21:44433149	T	G	44	0.273	32	38.719	7.163	12	40.333	1.231	30	12	PKNOX1	intronic	NA
MB_Group4_T2--GL	21:44433149	T	NA	68	0	68	39.544	2.606	0	0	0	68	0	PKNOX1	intronic	NA
MB_Group4_T2--1	2:37105207	C	G	37	0.162	31	38.484	3.129	6	38.500	2.950	31	6	STRN	intronic	NA
MB_Group4_T2--2	2:37105207	C	G	40	0.300	28	38.000	3.549	12	35.667	9.680	26	10	STRN	intronic	NA
MB_Group4_T2--3	2:37105207	C	G	67	0.284	48	37.083	5.738	19	39.421	1.742	44	19	STRN	intronic	NA
MB_Group4_T2--4	2:37105207	C	G	33	0.091	30	37.900	4.374	3	34.000	6.245	29	2	STRN	intronic	NA
MB_Group4_T2--5	2:37105207	C	G	56	0.250	42	38.738	3.500	14	39.071	2.235	41	14	STRN	intronic	NA
MB_Group4_T2--6	2:37105207	C	G	30	0.200	24	39.792	2.021	6	40.667	0.816	24	6	STRN	intronic	NA
MB_Group4_T2--7	2:37105207	C	G	42	0.214	33	37.939	3.929	9	34.111	12.424	32	8	STRN	intronic	NA
MB_Group4_T2--8	2:37105207	C	G	38	0.263	28	38.393	3.292	10	38.300	2.791	28	10	STRN	intronic	NA
MB_Group4_T2--9	2:37105207	C	G	38	0.184	31	39.129	3.274	7	39.286	2.752	31	7	STRN	intronic	NA
MB_Group4_T2--GL	2:37105207	C	NA	43	0	43	39.000	3.352	0	0	0	41	0	STRN	intronic	NA
MB_Group4_T2--1	2:5833337	G	T	54	0.259	40	33.925	6.952	14	32.286	9.555	36	11	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--2	2:5833337	G	T	50	0.180	41	35.585	6.395	9	32.111	5.925	39	7	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--3	2:5833337	G	T	83	0.217	65	36.323	5.560	18	36.111	4.861	63	16	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--4	2:5833337	G	T	82	0.280	59	35.305	5.380	23	32.826	7.463	56	17	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--5	2:5833337	G	T	88	0.170	73	34.781	6.031	15	32.600	7.836	67	12	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--6	2:5833337	G	T	49	0.245	37	36.432	3.663	12	34.417	10.950	36	11	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--7	2:5833337	G	T	78	0.321	53	34.283	5.545	25	32.560	10.174	46	20	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--8	2:5833337	G	T	68	0.176	56	34.661	7.214	12	38.417	3.059	52	12	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--9	2:5833337	G	T	48	0.188	39	35.128	6.542	9	31.333	12.258	36	6	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	2:5833337	G	NA	63	0	63	33.635	9.530	0	0	0	54	0	SOX11	exonic	nonsynonymous_SNV
MB_Group4_T2--1	2:62112246	C	NA	36	0	36	28.722	10.550	0	0	0	25	0	CCT4	intronic	NA
MB_Group4_T2--2	2:62112246	C	NA	47	0	45	28.244	9.301	0	0	0	24	0	CCT4	intronic	NA
MB_Group4_T2--3	2:62112246	C	T	44	0.068	41	28.878	9.045	3	21.000	17.059	25	1	CCT4	intronic	NA
MB_Group4_T2--4	2:62112246	C	NA	59	0	57	28.070	10.980	0	0	0	37	0	CCT4	intronic	NA
MB_Group4_T2--5	2:62112246	C	NA	51	0	51	31.824	7.620	0	0	0	39	0	CCT4	intronic	NA
MB_Group4_T2--6	2:62112246	C	NA	31	0	31	30.097	8.972	0	0	0	20	0	CCT4	intronic	NA
MB_Group4_T2--7	2:62112246	C	NA	50	0	48	29.188	9.407	0	0	0	29	0	CCT4	intronic	NA
MB_Group4_T2--8	2:62112246	C	T	43	0.116	38	30.737	10.492	5	22.800	13.180	28	2	CCT4	intronic	NA
MB_Group4_T2--9	2:62112246	C	T	34	0.235	26	27.885	12.561	8	27.375	12.478	17	6	CCT4	intronic	NA
MB_Group4_T2--GL	2:62112246	C	NA	44	0	42	33.952	5.860	0	0	0	36	0	CCT4	intronic	NA
MB_Group4_T2--1	2:8870572	G	NA	58	0	58	37.121	3.714	0	0	0	56	0	KIDINS220	UTR3	NA
MB_Group4_T2--2	2:8870572	G	NA	71	0	70	37.314	5.288	0	0	0	66	0	KIDINS220	UTR3	NA
MB_Group4_T2--3	2:8870572	G	A	96	0.052	91	37.769	5.186	5	36.400	4.980	88	5	KIDINS220	UTR3	NA
MB_Group4_T2--4	2:8870572	G	NA	75	0	74	38.041	5.178	0	0	0	71	0	KIDINS220	UTR3	NA
MB_Group4_T2--5	2:8870572	G	A	86	0.209	68	37.059	6.804	18	36.556	8.760	65	16	KIDINS220	UTR3	NA
MB_Group4_T2--6	2:8870572	G	NA	57	0	57	36.193	8.333	0	0	0	53	0	KIDINS220	UTR3	NA
MB_Group4_T2--7	2:8870572	G	NA	47	0	47	38.234	5.979	0	0	0	46	0	KIDINS220	UTR3	NA
MB_Group4_T2--8	2:8870572	G	NA	102	0	102	37.098	5.108	0	0	0	94	0	KIDINS220	UTR3	NA
MB_Group4_T2--9	2:8870572	G	NA	74	0	74	37.689	4.786	0	0	0	69	0	KIDINS220	UTR3	NA
MB_Group4_T2--GL	2:8870572	G	NA	60	0	60	38.417	3.164	0	0	0	59	0	KIDINS220	UTR3	NA
MB_Group4_T2--1	3:189039067	T	A	55	0.018	54	38.074	3.528	1	34.000	0.000	53	1	TPRG1	UTR3	NA
MB_Group4_T2--2	3:189039067	T	A	46	0.022	45	38.556	2.735	1	31.000	0.000	45	1	TPRG1	UTR3	NA
MB_Group4_T2--3	3:189039067	T	A	98	0.071	91	38.341	4.634	7	39.143	1.773	87	7	TPRG1	UTR3	NA
MB_Group4_T2--4	3:189039067	T	A	70	0.100	63	38.889	2.968	7	37.857	4.706	62	6	TPRG1	UTR3	NA
MB_Group4_T2--5	3:189039067	T	A	73	0.151	62	38.129	3.761	11	35.273	4.452	59	10	TPRG1	UTR3	NA
MB_Group4_T2--6	3:189039067	T	A	86	0.081	79	38.316	4.937	7	36.571	2.070	77	7	TPRG1	UTR3	NA
MB_Group4_T2--7	3:189039067	T	A	73	0.055	69	38.565	3.704	4	36.750	2.500	64	4	TPRG1	UTR3	NA
MB_Group4_T2--8	3:189039067	T	A	74	0.081	68	38.647	5.341	6	33.500	4.806	66	5	TPRG1	UTR3	NA
MB_Group4_T2--9	3:189039067	T	A	62	0.048	59	37.763	5.197	3	37.667	3.512	55	3	TPRG1	UTR3	NA
MB_Group4_T2--GL	3:189039067	T	NA	59	0	59	38.559	3.936	0	0	0	58	0	TPRG1	UTR3	NA
MB_Group4_T2--1	3:196196816	G	NA	22	0	16	36.812	5.102	0	0	0	15	0	RNF168	UTR3	NA
MB_Group4_T2--2	3:196196816	G	T	35	0.143	15	36.133	4.565	5	35.600	4.219	14	5	RNF168	UTR3	NA
MB_Group4_T2--3	3:196196816	G	T	47	0.128	19	38.263	3.229	6	29.167	13.732	19	5	RNF168	UTR3	NA
MB_Group4_T2--4	3:196196816	G	T	40	0.075	20	37.500	3.606	3	25.333	20.429	20	2	RNF168	UTR3	NA
MB_Group4_T2--5	3:196196816	G	NA	67	0	33	38.485	3.094	0	0	0	32	0	RNF168	UTR3	NA
MB_Group4_T2--6	3:196196816	G	NA	33	0	20	39.050	2.328	0	0	0	20	0	RNF168	UTR3	NA
MB_Group4_T2--7	3:196196816	G	NA	52	0	27	37.741	3.157	0	0	0	27	0	RNF168	UTR3	NA
MB_Group4_T2--8	3:196196816	G	T	40	0.100	23	38.826	2.640	4	35.500	1.915	23	4	RNF168	UTR3	NA
MB_Group4_T2--9	3:196196816	G	NA	32	0	11	39.273	2.760	0	0	0	11	0	RNF168	UTR3	NA
MB_Group4_T2--GL	3:196196816	G	NA	61	0	47	38.277	4.543	0	0	0	46	0	RNF168	UTR3	NA
MB_Group4_T2--1	3:42244693	A	NA	26	0	25	32.240	8.398	0	0	0	21	0	TRAK1	UTR3	NA
MB_Group4_T2--2	3:42244693	A	T	27	0.037	26	31.923	7.853	1	37.000	0.000	19	1	TRAK1	UTR3	NA
MB_Group4_T2--3	3:42244693	A	T	36	0.083	33	34.152	4.101	3	23.667	18.771	29	2	TRAK1	UTR3	NA
MB_Group4_T2--4	3:42244693	A	T	30	0.133	26	33.885	6.186	4	34.750	0.500	23	4	TRAK1	UTR3	NA
MB_Group4_T2--5	3:42244693	A	T	38	0.079	34	32.206	10.057	3	33.000	2.000	27	3	TRAK1	UTR3	NA
MB_Group4_T2--6	3:42244693	A	T	42	0.095	38	34.132	5.715	4	34.500	2.517	32	4	TRAK1	UTR3	NA
MB_Group4_T2--7	3:42244693	A	T	34	0.029	33	33.788	7.541	1	35.000	0.000	27	1	TRAK1	UTR3	NA
MB_Group4_T2--8	3:42244693	A	T	36	0.194	29	32.310	11.235	7	34.571	3.259	24	7	TRAK1	UTR3	NA
MB_Group4_T2--9	3:42244693	A	T	31	0.065	29	33.897	6.614	2	34.500	0.707	24	2	TRAK1	UTR3	NA
MB_Group4_T2--GL	3:42244693	A	NA	46	0	45	35.200	3.963	0	0	0	41	0	TRAK1	UTR3	NA
MB_Group4_T2--1	4:57190307	G	A	19	0.421	11	35.545	3.205	8	38.500	2.726	11	8	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--2	4:57190307	G	A	20	0.450	11	39.273	2.195	9	37.889	2.848	11	9	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--3	4:57190307	G	A	34	0.500	17	39.118	2.643	17	38.529	3.466	17	17	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--4	4:57190307	G	A	32	0.500	16	38.375	3.284	16	35.312	9.762	15	14	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--5	4:57190307	G	A	31	0.258	23	38.087	4.348	8	37.125	5.083	22	7	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--6	4:57190307	G	A	26	0.500	13	39.154	3.602	13	37.385	5.075	12	12	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--7	4:57190307	G	A	34	0.559	15	36.467	4.103	19	35.842	9.406	14	17	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--8	4:57190307	G	A	26	0.423	15	37.200	3.509	11	38.000	4.604	15	10	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--9	4:57190307	G	A	31	0.484	16	37.750	4.187	15	37.600	4.778	15	14	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	4:57190307	G	NA	36	0	36	38.278	2.865	0	0	0	36	0	KIAA1211	exonic	nonsynonymous_SNV
MB_Group4_T2--1	4:652630	G	C	95	0.242	72	35.042	6.903	23	33.826	8.558	66	19	PDE6B	intronic	NA
MB_Group4_T2--2	4:652630	G	C	123	0.203	98	35.622	6.603	25	36.120	3.667	88	24	PDE6B	intronic	NA
MB_Group4_T2--3	4:652630	G	C	179	0.207	142	36.352	5.854	37	35.189	7.397	134	34	PDE6B	intronic	NA
MB_Group4_T2--4	4:652630	G	C	169	0.296	119	36.630	4.166	50	37.740	3.288	113	50	PDE6B	intronic	NA
MB_Group4_T2--5	4:652630	G	C	182	0.231	139	35.727	6.240	42	36.405	6.593	129	40	PDE6B	intronic	NA
MB_Group4_T2--6	4:652630	G	C	135	0.252	100	34.780	8.812	34	36.529	4.187	91	32	PDE6B	intronic	NA
MB_Group4_T2--7	4:652630	G	C	153	0.144	131	36.305	5.886	22	34.955	6.925	120	20	PDE6B	intronic	NA
MB_Group4_T2--8	4:652630	G	C	126	0.063	118	36.559	5.231	8	36.250	5.874	114	7	PDE6B	intronic	NA
MB_Group4_T2--9	4:652630	G	C	103	0.175	85	35.894	5.992	18	37.667	3.049	80	18	PDE6B	intronic	NA
MB_Group4_T2--GL	4:652630	G	NA	173	0	172	37.000	4.280	0	0	0	163	0	PDE6B	intronic	NA
MB_Group4_T2--1	5:176308744	C	T	43	0.209	33	33.242	8.485	9	29.556	10.382	26	6	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--2	5:176308744	C	NA	56	0	56	36.679	4.636	0	0	0	50	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--3	5:176308744	C	T	82	0.024	80	36.725	6.556	2	27.500	13.435	74	1	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--4	5:176308744	C	NA	60	0	58	36.724	5.207	0	0	0	56	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--5	5:176308744	C	NA	102	0	102	34.951	8.417	0	0	0	84	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--6	5:176308744	C	NA	57	0	57	36.965	4.590	0	0	0	55	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--7	5:176308744	C	NA	69	0	69	38.203	3.243	0	0	0	68	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--8	5:176308744	C	NA	61	0	61	34.016	10.700	0	0	0	51	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--9	5:176308744	C	NA	50	0	50	37.620	5.127	0	0	0	47	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	5:176308744	C	NA	82	0	82	37.244	5.904	0	0	0	77	0	HK3	exonic	nonsynonymous_SNV
MB_Group4_T2--1	5:2754339	C	T	62	0.081	57	28.526	16.314	5	34.000	1.732	40	5	C5orf38	intronic	NA
MB_Group4_T2--2	5:2754339	C	T	47	0.149	40	31.650	13.208	7	32.571	3.155	32	6	C5orf38	intronic	NA
MB_Group4_T2--3	5:2754339	C	T	90	0.022	88	33.705	11.894	2	35.000	1.414	76	2	C5orf38	intronic	NA
MB_Group4_T2--4	5:2754339	C	T	84	0.024	82	34.854	9.881	2	35.500	2.121	73	2	C5orf38	intronic	NA
MB_Group4_T2--5	5:2754339	C	T	77	0.026	75	33.253	11.988	2	33.500	3.536	65	2	C5orf38	intronic	NA
MB_Group4_T2--6	5:2754339	C	T	56	0.071	52	32.173	13.241	4	34.750	0.957	41	4	C5orf38	intronic	NA
MB_Group4_T2--7	5:2754339	C	T	62	0.032	60	30.233	15.248	2	34.500	0.707	47	2	C5orf38	intronic	NA
MB_Group4_T2--8	5:2754339	C	T	71	0.070	66	31.742	13.559	5	28.600	14.910	53	4	C5orf38	intronic	NA
MB_Group4_T2--9	5:2754339	C	T	56	0.036	54	33.463	12.840	2	32.500	2.121	46	2	C5orf38	intronic	NA
MB_Group4_T2--GL	5:2754339	C	NA	56	0	55	33.364	13.324	0	0	0	47	0	C5orf38	intronic	NA
MB_Group4_T2--1	5:74021852	A	NA	32	0	13	39.231	2.421	0	0	0	13	0	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--2	5:74021852	A	NA	23	0	13	36.538	5.010	0	0	0	11	0	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--3	5:74021852	A	T	53	0.038	24	38.042	3.420	2	39.500	0.707	24	2	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--4	5:74021852	A	T	48	0.062	24	35.083	10.942	3	26.667	21.385	21	2	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--5	5:74021852	A	T	43	0.116	18	37.500	2.640	5	38.000	1.414	18	5	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--6	5:74021852	A	T	34	0.029	20	39.500	1.933	1	38.000	0.000	20	1	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--7	5:74021852	A	T	31	0.065	19	37.684	4.083	2	37.000	1.414	17	2	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--8	5:74021852	A	T	51	0.059	31	38.161	2.979	3	38.333	3.055	30	3	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--9	5:74021852	A	T	45	0.089	24	38.833	2.239	4	40.000	0.000	24	4	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	5:74021852	A	NA	63	0	38	37.658	6.419	0	0	0	37	0	GFM2	exonic	nonsynonymous_SNV
MB_Group4_T2--1	5:79028747	G	NA	67	0	67	36.746	4.656	0	0	0	63	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--2	5:79028747	G	NA	65	0	65	37.123	4.072	0	0	0	61	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--3	5:79028747	G	NA	90	0	90	37.211	7.154	0	0	0	83	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--4	5:79028747	G	NA	72	0	72	39.194	3.066	0	0	0	70	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--5	5:79028747	G	NA	67	0	67	38.403	3.546	0	0	0	65	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--6	5:79028747	G	A	59	0.169	49	37.102	5.760	10	36.800	5.554	47	8	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--7	5:79028747	G	NA	65	0	65	37.815	6.113	0	0	0	61	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--8	5:79028747	G	NA	72	0	72	37.681	5.170	0	0	0	67	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--9	5:79028747	G	NA	47	0	47	38.511	3.444	0	0	0	46	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	5:79028747	G	NA	84	0	84	38.702	4.854	0	0	0	82	0	CMYA5	exonic	nonsynonymous_SNV
MB_Group4_T2--1	6:169616609	T	G	30	0.100	27	37.407	5.521	3	38.000	1.732	25	3	THBS2	UTR3	NA
MB_Group4_T2--2	6:169616609	T	G	38	0.079	34	38.176	4.079	3	27.000	21.656	33	2	THBS2	UTR3	NA
MB_Group4_T2--3	6:169616609	T	G	65	0.062	61	36.836	6.984	4	36.250	4.573	56	4	THBS2	UTR3	NA
MB_Group4_T2--4	6:169616609	T	G	47	0.149	40	37.125	7.713	7	37.143	3.485	38	7	THBS2	UTR3	NA
MB_Group4_T2--5	6:169616609	T	G	59	0.034	57	37.456	3.505	2	34.000	8.485	56	1	THBS2	UTR3	NA
MB_Group4_T2--6	6:169616609	T	G	54	0.074	50	39.100	2.401	4	38.500	1.291	50	4	THBS2	UTR3	NA
MB_Group4_T2--7	6:169616609	T	G	55	0.109	49	37.551	5.058	6	36.000	3.899	46	6	THBS2	UTR3	NA
MB_Group4_T2--8	6:169616609	T	G	47	0.064	44	38.682	2.735	3	39.333	0.577	43	3	THBS2	UTR3	NA
MB_Group4_T2--9	6:169616609	T	G	43	0.047	41	38.098	3.826	2	39.000	2.828	38	2	THBS2	UTR3	NA
MB_Group4_T2--GL	6:169616609	T	NA	36	0	36	37.111	4.938	0	0	0	33	0	THBS2	UTR3	NA
MB_Group4_T2--1	6:31731874	C	T	35	0.200	28	35.071	5.544	7	32.857	14.088	25	6	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--2	6:31731874	C	T	42	0.119	37	35.189	4.383	5	39.200	2.490	32	5	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--3	6:31731874	C	T	72	0.222	56	36.232	4.036	16	36.312	9.485	52	15	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--4	6:31731874	C	T	64	0.281	46	33.696	8.801	18	38.722	3.578	36	17	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--5	6:31731874	C	T	63	0.381	39	33.128	8.992	24	37.542	3.811	32	23	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--6	6:31731874	C	T	29	0.138	24	36.542	3.890	4	26.250	16.194	21	3	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--7	6:31731874	C	T	75	0.200	60	36.083	6.347	15	39.400	1.454	56	15	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--8	6:31731874	C	T	55	0.109	49	33.714	8.150	6	39.167	3.251	42	6	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--9	6:31731874	C	T	43	0.233	33	35.697	5.294	10	38.500	3.719	29	9	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	6:31731874	C	NA	63	0	63	36.397	5.417	0	0	0	62	0	SAPCD1	exonic	nonsynonymous_SNV
MB_Group4_T2--1	8:108912939	G	A	22	0.364	14	34.643	5.213	8	38.625	1.598	13	8	RSPO2	UTR3	NA
MB_Group4_T2--2	8:108912939	G	NA	45	0	45	36.378	6.354	0	0	0	38	0	RSPO2	UTR3	NA
MB_Group4_T2--3	8:108912939	G	NA	51	0	51	37.235	6.078	0	0	0	49	0	RSPO2	UTR3	NA
MB_Group4_T2--4	8:108912939	G	NA	45	0	45	37.111	6.706	0	0	0	43	0	RSPO2	UTR3	NA
MB_Group4_T2--5	8:108912939	G	NA	64	0	64	37.375	5.394	0	0	0	63	0	RSPO2	UTR3	NA
MB_Group4_T2--6	8:108912939	G	NA	41	0	41	37.512	4.556	0	0	0	39	0	RSPO2	UTR3	NA
MB_Group4_T2--7	8:108912939	G	NA	43	0	43	36.395	8.407	0	0	0	41	0	RSPO2	UTR3	NA
MB_Group4_T2--8	8:108912939	G	NA	43	0	43	37.163	5.273	0	0	0	40	0	RSPO2	UTR3	NA
MB_Group4_T2--9	8:108912939	G	NA	44	0	44	38.364	3.028	0	0	0	43	0	RSPO2	UTR3	NA
MB_Group4_T2--GL	8:108912939	G	NA	64	0	64	37.391	5.737	0	0	0	63	0	RSPO2	UTR3	NA
MB_Group4_T2--1	8:110460473	G	NA	75	0	75	37.987	3.298	0	0	0	73	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--2	8:110460473	G	NA	74	0	74	37.230	5.548	0	0	0	72	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--3	8:110460473	G	NA	155	0	155	38.432	3.788	0	0	0	149	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--4	8:110460473	G	NA	164	0	164	38.524	4.692	0	0	0	159	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--5	8:110460473	G	NA	156	0	155	39.129	2.751	0	0	0	152	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--6	8:110460473	G	C	125	0.032	121	38.017	4.752	4	39.000	2.708	117	4	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--7	8:110460473	G	NA	128	0	128	38.562	3.720	0	0	0	124	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--8	8:110460473	G	C	145	0.166	121	38.388	3.682	24	38.792	3.134	118	23	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--9	8:110460473	G	NA	113	0	112	38.723	4.131	0	0	0	108	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	8:110460473	G	NA	144	0	144	38.285	5.500	0	0	0	137	0	PKHD1L1	exonic	nonsynonymous_SNV
MB_Group4_T2--1	8:144642501	C	NA	39	0	39	35.795	8.712	0	0	0	36	0	GSDMD	intronic	NA
MB_Group4_T2--2	8:144642501	C	NA	33	0	33	32.333	10.279	0	0	0	27	0	GSDMD	intronic	NA
MB_Group4_T2--3	8:144642501	C	A	66	0.030	64	34.203	9.517	2	38.000	4.243	54	2	GSDMD	intronic	NA
MB_Group4_T2--4	8:144642501	C	NA	61	0	60	35.550	8.865	0	0	0	54	0	GSDMD	intronic	NA
MB_Group4_T2--5	8:144642501	C	A	55	0.236	42	33.976	10.735	13	37.385	3.380	37	13	GSDMD	intronic	NA
MB_Group4_T2--6	8:144642501	C	A	38	0.026	37	37.649	3.393	1	36.000	0.000	35	1	GSDMD	intronic	NA
MB_Group4_T2--7	8:144642501	C	NA	65	0	65	35.646	6.990	0	0	0	61	0	GSDMD	intronic	NA
MB_Group4_T2--8	8:144642501	C	NA	44	0	44	35.455	8.415	0	0	0	40	0	GSDMD	intronic	NA
MB_Group4_T2--9	8:144642501	C	NA	32	0	32	33.969	9.937	0	0	0	27	0	GSDMD	intronic	NA
MB_Group4_T2--GL	8:144642501	C	NA	83	0	83	34.482	8.916	0	0	0	74	0	GSDMD	intronic	NA
MB_Group4_T2--1	8:17501954	G	A	16	0.250	12	36.583	3.579	4	33.500	4.123	12	3	MTUS1	UTR3	NA
MB_Group4_T2--2	8:17501954	G	NA	12	0	12	38.833	3.040	0	0	0	12	0	MTUS1	UTR3	NA
MB_Group4_T2--3	8:17501954	G	NA	23	0	23	36.087	7.440	0	0	0	20	0	MTUS1	UTR3	NA
MB_Group4_T2--4	8:17501954	G	A	18	0.056	17	37.471	7.930	1	39.000	0.000	16	1	MTUS1	UTR3	NA
MB_Group4_T2--5	8:17501954	G	NA	20	0	20	38.100	3.726	0	0	0	20	0	MTUS1	UTR3	NA
MB_Group4_T2--6	8:17501954	G	A	23	0.043	22	38.364	5.403	1	39.000	0.000	20	1	MTUS1	UTR3	NA
MB_Group4_T2--7	8:17501954	G	A	39	0.026	38	39.395	2.717	1	34.000	0.000	38	1	MTUS1	UTR3	NA
MB_Group4_T2--8	8:17501954	G	A	21	0.095	19	37.263	6.217	2	39.000	0.000	17	2	MTUS1	UTR3	NA
MB_Group4_T2--9	8:17501954	G	NA	15	0	15	36.133	9.870	0	0	0	14	0	MTUS1	UTR3	NA
MB_Group4_T2--GL	8:17501954	G	NA	49	0	49	38.694	3.417	0	0	0	48	0	MTUS1	UTR3	NA
MB_Group4_T2--1	8:17501955	G	T	16	0.250	12	34.167	7.998	4	33.250	5.377	10	3	MTUS1	UTR3	NA
MB_Group4_T2--2	8:17501955	G	NA	12	0	12	39.417	1.929	0	0	0	12	0	MTUS1	UTR3	NA
MB_Group4_T2--3	8:17501955	G	NA	23	0	23	36.870	5.003	0	0	0	20	0	MTUS1	UTR3	NA
MB_Group4_T2--4	8:17501955	G	T	18	0.111	16	38.875	4.272	2	23.000	21.213	15	1	MTUS1	UTR3	NA
MB_Group4_T2--5	8:17501955	G	T	21	0.048	20	37.900	5.964	1	31.000	0.000	19	1	MTUS1	UTR3	NA
MB_Group4_T2--6	8:17501955	G	T	23	0.043	22	38.409	3.813	1	39.000	0.000	20	1	MTUS1	UTR3	NA
MB_Group4_T2--7	8:17501955	G	T	39	0.026	38	38.711	3.471	1	34.000	0.000	37	1	MTUS1	UTR3	NA
MB_Group4_T2--8	8:17501955	G	T	22	0.091	20	38.050	4.019	2	39.000	0.000	19	2	MTUS1	UTR3	NA
MB_Group4_T2--9	8:17501955	G	NA	15	0	15	35.667	9.832	0	0	0	13	0	MTUS1	UTR3	NA
MB_Group4_T2--GL	8:17501955	G	NA	47	0	47	38.043	5.095	0	0	0	45	0	MTUS1	UTR3	NA
MB_Group4_T2--1	X:12938367	T	NA	49	0	49	37.735	5.219	0	0	0	46	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--2	X:12938367	T	NA	45	0	45	37.267	5.011	0	0	0	41	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--3	X:12938367	T	NA	89	0	89	37.596	5.549	0	0	0	84	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--4	X:12938367	T	NA	53	0	53	38.887	2.539	0	0	0	53	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--5	X:12938367	T	NA	76	0	76	37.750	4.558	0	0	0	74	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--6	X:12938367	T	C	65	0.062	61	38.787	2.091	4	33.250	4.992	61	3	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--7	X:12938367	T	NA	53	0	53	38.132	3.674	0	0	0	51	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--8	X:12938367	T	C	64	0.250	48	38.979	2.522	16	38.062	3.473	48	16	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--9	X:12938367	T	NA	73	0	73	36.904	6.611	0	0	0	68	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	X:12938367	T	NA	94	0	94	38.606	3.108	0	0	0	93	0	TLR8	exonic	nonsynonymous_SNV
MB_Group4_T2--1	X:134749557	G	T	14	0.143	12	36.667	6.946	2	38.000	0.000	11	2	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--2	X:134749557	G	T	16	0.062	15	37.467	6.390	1	36.000	0.000	14	1	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--3	X:134749557	G	T	27	0.148	23	37.435	5.053	4	40.250	0.957	21	4	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--4	X:134749557	G	T	24	0.083	22	37.364	7.061	2	38.000	4.243	20	2	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--5	X:134749557	G	NA	27	0	27	37.481	7.501	0	0	0	26	0	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--6	X:134749557	G	T	18	0.278	13	38.462	2.184	5	38.000	2.915	13	5	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--7	X:134749557	G	NA	13	0	13	33.923	14.297	0	0	0	11	0	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--8	X:134749557	G	T	19	0.053	18	39.778	1.987	1	41.000	0.000	18	1	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--9	X:134749557	G	T	19	0.105	17	39.118	2.595	2	41.000	0.000	17	2	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--GL	X:134749557	G	NA	35	0	35	38.343	7.669	0	0	0	33	0	DDX26B(dist=33097),CT45A1(dist=97628)	intergenic	NA
MB_Group4_T2--1	X:2795259	G	A	20	0.200	16	36.125	4.801	4	39.000	1.414	13	4	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--2	X:2795259	G	NA	26	0	26	36.000	6.542	0	0	0	24	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--3	X:2795259	G	A	38	0.026	37	35.000	9.247	1	40.000	0.000	32	1	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--4	X:2795259	G	NA	21	0	21	36.857	5.659	0	0	0	19	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--5	X:2795259	G	NA	34	0	34	38.000	4.492	0	0	0	33	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--6	X:2795259	G	NA	24	0	24	36.417	8.377	0	0	0	22	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--7	X:2795259	G	NA	27	0	27	36.259	3.789	0	0	0	25	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--8	X:2795259	G	NA	22	0	22	37.636	3.812	0	0	0	21	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--9	X:2795259	G	NA	21	0	21	37.667	3.337	0	0	0	21	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--GL	X:2795259	G	NA	61	0	61	37.836	3.765	0	0	0	60	0	GYG2	exonic	nonsynonymous_SNV
MB_Group4_T2--1	X:91875483	T	G	29	0.034	25	21.400	13.096	1	37.000	0.000	9	1	PCDH11X	UTR3	NA
MB_Group4_T2--2	X:91875483	T	G	30	0.133	26	24.692	10.732	4	26.750	16.741	11	3	PCDH11X	UTR3	NA
MB_Group4_T2--3	X:91875483	T	G	55	0.145	45	27.111	10.345	8	33.000	3.423	25	7	PCDH11X	UTR3	NA
MB_Group4_T2--4	X:91875483	T	G	30	0.167	25	26.400	8.935	5	23.800	12.911	10	3	PCDH11X	UTR3	NA
MB_Group4_T2--5	X:91875483	T	G	39	0.103	35	26.800	9.203	4	25.500	13.178	18	3	PCDH11X	UTR3	NA
MB_Group4_T2--6	X:91875483	T	G	41	0.146	33	25.182	10.629	6	24.333	13.852	15	4	PCDH11X	UTR3	NA
MB_Group4_T2--7	X:91875483	T	G	36	0.194	27	29.593	9.145	7	30.714	2.870	18	5	PCDH11X	UTR3	NA
MB_Group4_T2--8	X:91875483	T	G	28	0.179	22	29.182	7.327	5	22.000	16.628	12	3	PCDH11X	UTR3	NA
MB_Group4_T2--9	X:91875483	T	G	39	0.205	31	28.613	9.570	8	28.625	11.649	19	6	PCDH11X	UTR3	NA
MB_Group4_T2--GL	X:91875483	T	G	67	0.015	66	26.818	10.207	1	23.000	0.000	33	0	PCDH11X	UTR3	NA
MB_Group4_T2--1	X:91875484	G	NA	27	0	16	21.562	14.864	0	0	0	6	0	PCDH11X	UTR3	NA
MB_Group4_T2--2	X:91875484	G	T	27	0.111	12	31.500	10.185	3	30.000	2.000	9	2	PCDH11X	UTR3	NA
MB_Group4_T2--3	X:91875484	G	T	50	0.140	20	29.300	10.544	7	31.857	3.436	12	5	PCDH11X	UTR3	NA
MB_Group4_T2--4	X:91875484	G	T	31	0.161	13	26.077	13.531	5	30.400	5.079	7	3	PCDH11X	UTR3	NA
MB_Group4_T2--5	X:91875484	G	T	37	0.081	18	31.111	5.603	3	25.333	8.327	10	1	PCDH11X	UTR3	NA
MB_Group4_T2--6	X:91875484	G	T	41	0.098	21	26.476	13.060	4	30.000	2.449	13	2	PCDH11X	UTR3	NA
MB_Group4_T2--7	X:91875484	G	T	35	0.200	14	29.714	11.364	7	26.143	9.856	10	4	PCDH11X	UTR3	NA
MB_Group4_T2--8	X:91875484	G	T	27	0.148	13	30.308	9.313	4	23.500	14.457	9	2	PCDH11X	UTR3	NA
MB_Group4_T2--9	X:91875484	G	T	36	0.194	19	32.211	8.973	7	27.286	11.412	15	5	PCDH11X	UTR3	NA
MB_Group4_T2--GL	X:91875484	G	NA	68	0	60	32.867	8.645	0	0	0	46	0	PCDH11X	UTR3	NA
MB_Group4_T3--1	11:104872873	T	NA	52	0	52	35.942	6.005	0	0	0	45	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--2	11:104872873	T	A	53	0.189	43	35.000	8.258	10	36.100	7.400	40	9	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--3	11:104872873	T	NA	43	0	43	34.977	7.942	0	0	0	40	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--4	11:104872873	T	NA	52	0	52	36.038	5.770	0	0	0	46	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--5	11:104872873	T	NA	29	0	29	34.966	7.957	0	0	0	26	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--6	11:104872873	T	NA	40	0	40	37.225	3.238	0	0	0	39	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--7	11:104872873	T	NA	45	0	45	35.244	7.952	0	0	0	39	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--8	11:104872873	T	NA	53	0	53	35.623	6.508	0	0	0	46	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	11:104872873	T	NA	48	0	48	36.417	4.890	0	0	0	45	0	CASP5	exonic	nonsynonymous_SNV
MB_Group4_T3--1	1:110734574	G	NA	123	0	123	34.585	7.901	0	0	0	106	0	SLC6A17	intronic	NA
MB_Group4_T3--2	1:110734574	G	NA	120	0	119	36.681	4.636	0	0	0	113	0	SLC6A17	intronic	NA
MB_Group4_T3--3	1:110734574	G	NA	139	0	136	34.882	7.627	0	0	0	124	0	SLC6A17	intronic	NA
MB_Group4_T3--4	1:110734574	G	NA	153	0	152	34.513	8.199	0	0	0	135	0	SLC6A17	intronic	NA
MB_Group4_T3--5	1:110734574	G	NA	119	0	117	34.462	7.424	0	0	0	100	0	SLC6A17	intronic	NA
MB_Group4_T3--6	1:110734574	G	NA	136	0	133	33.639	9.562	0	0	0	110	0	SLC6A17	intronic	NA
MB_Group4_T3--7	1:110734574	G	A	95	0.168	78	33.628	9.905	16	34.812	4.943	65	15	SLC6A17	intronic	NA
MB_Group4_T3--8	1:110734574	G	NA	137	0	137	34.650	8.254	0	0	0	122	0	SLC6A17	intronic	NA
MB_Group4_T3--GL	1:110734574	G	NA	144	0	144	34.465	8.291	0	0	0	128	0	SLC6A17	intronic	NA
MB_Group4_T3--1	11:56230566	G	A	192	0.089	174	35.466	8.190	17	37.353	4.315	153	16	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--2	11:56230566	G	A	207	0.222	160	35.731	7.835	46	36.087	6.232	140	41	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--3	11:56230566	G	NA	161	0	160	36.325	6.488	0	0	0	145	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--4	11:56230566	G	NA	151	0	151	35.066	7.912	0	0	0	136	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--5	11:56230566	G	NA	123	0	122	35.664	7.436	0	0	0	104	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--6	11:56230566	G	NA	124	0	122	36.098	7.755	0	0	0	112	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--7	11:56230566	G	NA	174	0	174	37.270	4.454	0	0	0	165	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--8	11:56230566	G	A	139	0.007	138	37.355	4.860	1	37.000	0.000	132	1	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--GL	11:56230566	G	NA	204	0	204	36.505	7.286	0	0	0	192	0	OR5M9	exonic	synonymous_SNV
MB_Group4_T3--1	1:156907156	C	A	55	0.109	48	32.167	10.184	6	22.667	14.922	36	3	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--2	1:156907156	C	NA	58	0	57	33.211	10.012	0	0	0	47	0	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--3	1:156907156	C	A	48	0.146	40	33.475	8.732	7	33.143	4.525	31	6	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--4	1:156907156	C	A	69	0.449	37	31.243	11.283	31	25.935	11.699	27	16	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--5	1:156907156	C	A	41	0.415	24	33.917	9.074	17	27.529	13.803	21	10	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--6	1:156907156	C	A	57	0.632	20	31.450	13.705	36	26.833	12.867	16	24	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--7	1:156907156	C	NA	43	0	43	31.837	10.125	0	0	0	34	0	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--8	1:156907156	C	A	55	0.291	39	34.564	6.916	16	26.750	12.069	35	9	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	1:156907156	C	NA	86	0	83	32.699	11.142	0	0	0	66	0	ARHGEF11	exonic	nonsynonymous_SNV
MB_Group4_T3--1	12:121768746	C	NA	57	0	57	35.561	5.011	0	0	0	52	0	ANAPC5	intronic	NA
MB_Group4_T3--2	12:121768746	C	NA	45	0	45	34.822	7.935	0	0	0	40	0	ANAPC5	intronic	NA
MB_Group4_T3--3	12:121768746	C	NA	37	0	37	29.622	13.965	0	0	0	28	0	ANAPC5	intronic	NA
MB_Group4_T3--4	12:121768746	C	NA	63	0	62	34.194	7.059	0	0	0	53	0	ANAPC5	intronic	NA
MB_Group4_T3--5	12:121768746	C	NA	38	0	38	32.053	10.598	0	0	0	29	0	ANAPC5	intronic	NA
MB_Group4_T3--6	12:121768746	C	NA	62	0	62	33.452	10.309	0	0	0	51	0	ANAPC5	intronic	NA
MB_Group4_T3--7	12:121768746	C	A	29	0.207	22	33.455	8.868	6	33.000	15.297	16	5	ANAPC5	intronic	NA
MB_Group4_T3--8	12:121768746	C	NA	47	0	47	35.894	7.399	0	0	0	43	0	ANAPC5	intronic	NA
MB_Group4_T3--GL	12:121768746	C	NA	66	0	65	35.831	6.100	0	0	0	56	0	ANAPC5	intronic	NA
MB_Group4_T3--1	12:24968451	G	A	49	0.020	48	36.188	5.123	1	39.000	0.000	46	1	BCAT1	UTR3	NA
MB_Group4_T3--2	12:24968451	G	A	49	0.265	36	37.306	3.808	13	33.615	5.709	35	11	BCAT1	UTR3	NA
MB_Group4_T3--3	12:24968451	G	NA	45	0	45	37.400	3.551	0	0	0	44	0	BCAT1	UTR3	NA
MB_Group4_T3--4	12:24968451	G	NA	50	0	50	36.640	4.898	0	0	0	47	0	BCAT1	UTR3	NA
MB_Group4_T3--5	12:24968451	G	NA	49	0	49	34.592	8.626	0	0	0	42	0	BCAT1	UTR3	NA
MB_Group4_T3--6	12:24968451	G	NA	57	0	57	37.000	5.332	0	0	0	53	0	BCAT1	UTR3	NA
MB_Group4_T3--7	12:24968451	G	NA	35	0	35	36.571	8.375	0	0	0	33	0	BCAT1	UTR3	NA
MB_Group4_T3--8	12:24968451	G	NA	42	0	42	38.071	3.048	0	0	0	41	0	BCAT1	UTR3	NA
MB_Group4_T3--GL	12:24968451	G	NA	50	0	50	37.760	4.461	0	0	0	48	0	BCAT1	UTR3	NA
MB_Group4_T3--1	1:26606029	G	A	56	0.054	53	36.472	6.661	3	34.667	1.155	45	3	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--2	1:26606029	G	A	52	0.096	47	36.468	6.351	5	36.000	1.225	44	5	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--3	1:26606029	G	A	48	0.062	45	35.600	8.529	3	35.000	3.000	40	3	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--4	1:26606029	G	A	74	0.081	68	36.397	6.123	6	28.500	13.217	63	5	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--5	1:26606029	G	A	51	0.118	45	35.467	7.191	6	29.500	13.605	39	5	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--6	1:26606029	G	A	63	0.079	57	36.912	4.327	5	25.800	13.989	55	3	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--7	1:26606029	G	A	40	0.125	35	35.571	6.831	5	35.200	1.483	31	5	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--8	1:26606029	G	A	74	0.162	62	35.903	7.459	12	32.667	10.030	56	10	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--GL	1:26606029	G	NA	75	0	74	36.770	6.690	0	0	0	69	0	SH3BGRL3;CEP85	upstream;downstream	NA
MB_Group4_T3--1	15:41483631	T	NA	37	0	37	38.243	3.312	0	0	0	36	0	EXD1	intronic	NA
MB_Group4_T3--2	15:41483631	T	A	26	0.077	24	35.583	8.235	2	32.500	2.121	22	2	EXD1	intronic	NA
MB_Group4_T3--3	15:41483631	T	A	28	0.071	26	38.269	4.387	2	31.000	4.243	25	1	EXD1	intronic	NA
MB_Group4_T3--4	15:41483631	T	A	53	0.057	50	37.220	6.665	3	33.000	1.732	47	3	EXD1	intronic	NA
MB_Group4_T3--5	15:41483631	T	A	34	0.176	28	37.714	4.241	6	34.667	3.670	26	6	EXD1	intronic	NA
MB_Group4_T3--6	15:41483631	T	NA	40	0	39	37.718	4.279	0	0	0	36	0	EXD1	intronic	NA
MB_Group4_T3--7	15:41483631	T	NA	23	0	23	38.913	2.778	0	0	0	23	0	EXD1	intronic	NA
MB_Group4_T3--8	15:41483631	T	A	57	0.053	54	37.852	3.147	3	33.000	1.732	53	3	EXD1	intronic	NA
MB_Group4_T3--GL	15:41483631	T	NA	61	0	61	37.443	4.245	0	0	0	57	0	EXD1	intronic	NA
MB_Group4_T3--1	15:82422556	A	G	40	0.175	17	35.941	6.169	7	39.143	2.545	14	7	EFTUD1	downstream	NA
MB_Group4_T3--2	15:82422556	A	G	42	0.119	24	38.875	3.301	5	36.200	6.535	23	4	EFTUD1	downstream	NA
MB_Group4_T3--3	15:82422556	A	NA	41	0	32	35.125	9.731	0	0	0	26	0	EFTUD1	downstream	NA
MB_Group4_T3--4	15:82422556	A	G	54	0.056	29	38.655	3.716	3	25.000	20.224	28	2	EFTUD1	downstream	NA
MB_Group4_T3--5	15:82422556	A	NA	35	0	24	33.708	12.723	0	0	0	20	0	EFTUD1	downstream	NA
MB_Group4_T3--6	15:82422556	A	G	49	0.041	27	38.370	3.421	2	35.500	6.364	26	2	EFTUD1	downstream	NA
MB_Group4_T3--7	15:82422556	A	G	32	0.031	18	34.889	9.517	1	35.000	0.000	15	1	EFTUD1	downstream	NA
MB_Group4_T3--8	15:82422556	A	G	58	0.017	30	37.500	5.588	1	37.000	0.000	29	1	EFTUD1	downstream	NA
MB_Group4_T3--GL	15:82422556	A	NA	68	0	43	37.372	5.350	0	0	0	41	0	EFTUD1	downstream	NA
MB_Group4_T3--1	15:90617544	G	NA	81	0	81	34.840	8.688	0	0	0	71	0	ZNF710	intronic	NA
MB_Group4_T3--2	15:90617544	G	NA	57	0	56	35.982	4.945	0	0	0	52	0	ZNF710	intronic	NA
MB_Group4_T3--3	15:90617544	G	NA	93	0	93	34.290	7.801	0	0	0	82	0	ZNF710	intronic	NA
MB_Group4_T3--4	15:90617544	G	NA	120	0	120	33.958	8.275	0	0	0	104	0	ZNF710	intronic	NA
MB_Group4_T3--5	15:90617544	G	NA	87	0	87	34.805	7.693	0	0	0	78	0	ZNF710	intronic	NA
MB_Group4_T3--6	15:90617544	G	NA	113	0	113	34.628	7.128	0	0	0	102	0	ZNF710	intronic	NA
MB_Group4_T3--7	15:90617544	G	A	53	0.226	41	36.293	3.790	12	33.167	7.222	38	9	ZNF710	intronic	NA
MB_Group4_T3--8	15:90617544	G	NA	133	0	133	35.331	7.600	0	0	0	119	0	ZNF710	intronic	NA
MB_Group4_T3--GL	15:90617544	G	NA	165	0	165	35.473	7.311	0	0	0	150	0	ZNF710	intronic	NA
MB_Group4_T3--1	16:4524035	C	A	30	0.400	18	34.333	5.064	12	33.333	6.429	15	9	NMRAL1	intronic	NA
MB_Group4_T3--2	16:4524035	C	A	26	0.269	19	30.684	9.832	7	31.857	6.176	12	5	NMRAL1	intronic	NA
MB_Group4_T3--3	16:4524035	C	A	24	0.292	17	35.118	6.566	7	35.714	5.880	15	6	NMRAL1	intronic	NA
MB_Group4_T3--4	16:4524035	C	A	38	0.053	35	31.314	10.613	2	20.500	26.163	28	1	NMRAL1	intronic	NA
MB_Group4_T3--5	16:4524035	C	NA	33	0	33	33.303	9.452	0	0	0	28	0	NMRAL1	intronic	NA
MB_Group4_T3--6	16:4524035	C	NA	29	0	29	34.276	4.674	0	0	0	26	0	NMRAL1	intronic	NA
MB_Group4_T3--7	16:4524035	C	A	16	0.250	12	27.167	15.379	4	29.500	8.426	9	2	NMRAL1	intronic	NA
MB_Group4_T3--8	16:4524035	C	A	38	0.158	32	35.156	6.310	6	24.500	14.653	28	3	NMRAL1	intronic	NA
MB_Group4_T3--GL	16:4524035	C	NA	47	0	47	35.638	7.048	0	0	0	43	0	NMRAL1	intronic	NA
MB_Group4_T3--1	16:57794301	C	G	97	0.021	94	33.915	8.571	2	40.500	0.707	81	2	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--2	16:57794301	C	NA	104	0	104	34.308	10.134	0	0	0	93	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--3	16:57794301	C	G	61	0.148	50	34.440	9.049	9	37.556	2.506	44	9	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--4	16:57794301	C	NA	86	0	86	35.012	6.184	0	0	0	76	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--5	16:57794301	C	NA	62	0	62	34.258	7.834	0	0	0	51	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--6	16:57794301	C	NA	98	0	97	35.598	6.791	0	0	0	90	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--7	16:57794301	C	NA	71	0	71	35.254	7.563	0	0	0	64	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--8	16:57794301	C	NA	110	0	110	35.545	7.583	0	0	0	100	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	16:57794301	C	NA	143	0	143	35.133	8.267	0	0	0	126	0	KIFC3	exonic	nonsynonymous_SNV
MB_Group4_T3--1	18:21489391	G	T	33	0.152	28	33.000	10.667	5	36.600	4.037	23	5	LAMA3	intronic	NA
MB_Group4_T3--2	18:21489391	G	T	36	0.361	23	36.826	7.975	13	35.692	4.785	22	12	LAMA3	intronic	NA
MB_Group4_T3--3	18:21489391	G	T	41	0.122	36	38.639	3.720	5	37.200	2.588	35	5	LAMA3	intronic	NA
MB_Group4_T3--4	18:21489391	G	NA	39	0	39	37.667	4.106	0	0	0	37	0	LAMA3	intronic	NA
MB_Group4_T3--5	18:21489391	G	NA	28	0	28	36.536	6.298	0	0	0	27	0	LAMA3	intronic	NA
MB_Group4_T3--6	18:21489391	G	NA	36	0	35	37.686	4.114	0	0	0	34	0	LAMA3	intronic	NA
MB_Group4_T3--7	18:21489391	G	T	24	0.292	17	36.118	7.825	7	36.286	8.597	16	6	LAMA3	intronic	NA
MB_Group4_T3--8	18:21489391	G	T	25	0.120	22	37.227	6.301	3	39.667	2.309	21	3	LAMA3	intronic	NA
MB_Group4_T3--GL	18:21489391	G	NA	37	0	37	34.054	10.609	0	0	0	30	0	LAMA3	intronic	NA
MB_Group4_T3--1	19:1093927	C	A	21	0.095	19	30.947	9.947	2	33.500	4.950	13	2	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--2	19:1093927	C	A	22	0.364	14	30.071	9.926	8	37.000	2.673	9	8	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--3	19:1093927	C	NA	16	0	16	33.375	4.129	0	0	0	14	0	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--4	19:1093927	C	NA	23	0	22	33.591	8.302	0	0	0	18	0	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--5	19:1093927	C	NA	14	0	14	36.857	3.483	0	0	0	13	0	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--6	19:1093927	C	NA	30	0	30	35.567	4.747	0	0	0	25	0	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--7	19:1093927	C	A	16	0.312	11	32.909	11.211	5	29.000	6.442	9	3	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--8	19:1093927	C	A	34	0.088	31	36.355	3.684	3	36.000	1.732	29	3	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	19:1093927	C	NA	42	0	42	34.619	6.428	0	0	0	39	0	POLR2E	exonic	nonsynonymous_SNV
MB_Group4_T3--1	19:21579958	C	T	97	0.206	75	30.600	11.143	20	28.700	10.989	53	12	ZNF493	UTR5	NA
MB_Group4_T3--2	19:21579958	C	NA	90	0	88	31.091	10.356	0	0	0	63	0	ZNF493	UTR5	NA
MB_Group4_T3--3	19:21579958	C	T	107	0.280	72	30.639	10.132	30	28.067	12.398	49	18	ZNF493	UTR5	NA
MB_Group4_T3--4	19:21579958	C	T	119	0.538	54	33.241	9.497	64	26.594	12.259	45	34	ZNF493	UTR5	NA
MB_Group4_T3--5	19:21579958	C	T	67	0.552	28	28.393	11.849	37	26.595	11.381	16	19	ZNF493	UTR5	NA
MB_Group4_T3--6	19:21579958	C	T	97	0.557	40	32.975	8.049	54	27.889	13.611	34	36	ZNF493	UTR5	NA
MB_Group4_T3--7	19:21579958	C	NA	100	0	100	29.890	12.194	0	0	0	71	0	ZNF493	UTR5	NA
MB_Group4_T3--8	19:21579958	C	T	138	0.341	90	29.478	12.092	47	31.681	9.349	59	36	ZNF493	UTR5	NA
MB_Group4_T3--GL	19:21579958	C	NA	223	0	222	31.036	10.757	0	0	0	163	0	ZNF493	UTR5	NA
MB_Group4_T3--1	19:49935927	A	G	21	0.048	20	31.700	9.223	1	28.000	0.000	16	0	SLC17A7	intronic	NA
MB_Group4_T3--2	19:49935927	A	NA	10	0	10	32.200	10.665	0	0	0	9	0	SLC17A7	intronic	NA
MB_Group4_T3--3	19:49935927	A	G	22	0.182	18	33.222	8.447	4	33.750	1.258	16	4	SLC17A7	intronic	NA
MB_Group4_T3--4	19:49935927	A	NA	20	0	20	35.650	3.422	0	0	0	19	0	SLC17A7	intronic	NA
MB_Group4_T3--5	19:49935927	A	NA	14	0	14	33.214	5.700	0	0	0	12	0	SLC17A7	intronic	NA
MB_Group4_T3--6	19:49935927	A	NA	17	0	17	33.706	8.745	0	0	0	16	0	SLC17A7	intronic	NA
MB_Group4_T3--7	19:49935927	A	G	11	0.091	10	31.100	9.339	1	31.000	0.000	7	1	SLC17A7	intronic	NA
MB_Group4_T3--8	19:49935927	A	G	25	0.120	22	35.227	8.124	3	26.667	9.713	21	1	SLC17A7	intronic	NA
MB_Group4_T3--GL	19:49935927	A	NA	36	0	36	34.389	6.888	0	0	0	33	0	SLC17A7	intronic	NA
MB_Group4_T3--1	19:6697501	G	NA	66	0	63	32.905	7.002	0	0	0	53	0	C3	exonic	stopgain_SNV
MB_Group4_T3--2	19:6697501	G	A	87	0.218	68	33.059	8.089	19	29.737	9.164	56	13	C3	exonic	stopgain_SNV
MB_Group4_T3--3	19:6697501	G	NA	75	0	75	32.307	8.092	0	0	0	61	0	C3	exonic	stopgain_SNV
MB_Group4_T3--4	19:6697501	G	NA	84	0	84	30.964	9.721	0	0	0	64	0	C3	exonic	stopgain_SNV
MB_Group4_T3--5	19:6697501	G	NA	55	0	54	33.167	6.362	0	0	0	45	0	C3	exonic	stopgain_SNV
MB_Group4_T3--6	19:6697501	G	NA	85	0	85	31.565	8.493	0	0	0	68	0	C3	exonic	stopgain_SNV
MB_Group4_T3--7	19:6697501	G	NA	65	0	65	35.169	4.967	0	0	0	60	0	C3	exonic	stopgain_SNV
MB_Group4_T3--8	19:6697501	G	NA	116	0	115	32.609	9.130	0	0	0	93	0	C3	exonic	stopgain_SNV
MB_Group4_T3--GL	19:6697501	G	NA	185	0	185	34.968	5.872	0	0	0	164	0	C3	exonic	stopgain_SNV
MB_Group4_T3--1	20:33874191	C	T	31	0.097	28	32.464	10.772	3	31.333	4.619	22	2	FAM83C	UTR3	NA
MB_Group4_T3--2	20:33874191	C	NA	32	0	30	29.067	13.457	0	0	0	23	0	FAM83C	UTR3	NA
MB_Group4_T3--3	20:33874191	C	T	37	0.189	30	33.267	8.554	7	34.286	1.890	25	7	FAM83C	UTR3	NA
MB_Group4_T3--4	20:33874191	C	NA	31	0	28	31.607	11.246	0	0	0	20	0	FAM83C	UTR3	NA
MB_Group4_T3--5	20:33874191	C	T	35	0.143	30	34.667	7.494	5	28.400	8.764	27	4	FAM83C	UTR3	NA
MB_Group4_T3--6	20:33874191	C	T	34	0.029	33	33.636	8.933	1	34.000	0.000	29	1	FAM83C	UTR3	NA
MB_Group4_T3--7	20:33874191	C	T	37	0.054	35	33.229	10.514	2	32.000	1.414	31	2	FAM83C	UTR3	NA
MB_Group4_T3--8	20:33874191	C	NA	43	0	37	30.946	11.979	0	0	0	28	0	FAM83C	UTR3	NA
MB_Group4_T3--GL	20:33874191	C	NA	57	0	55	33.800	9.456	0	0	0	46	0	FAM83C	UTR3	NA
MB_Group4_T3--1	2:101911444	T	C	133	0.098	120	38.092	3.073	13	37.385	5.189	118	12	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--2	2:101911444	T	C	94	0.160	78	36.910	4.685	15	39.200	2.455	71	15	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--3	2:101911444	T	C	103	0.175	85	37.282	4.482	18	38.167	3.536	79	18	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--4	2:101911444	T	NA	118	0	117	35.607	8.312	0	0	0	102	0	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--5	2:101911444	T	NA	98	0	98	36.582	6.454	0	0	0	89	0	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--6	2:101911444	T	NA	103	0	102	37.451	3.780	0	0	0	98	0	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--7	2:101911444	T	NA	93	0	93	38.441	3.150	0	0	0	91	0	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--8	2:101911444	T	C	163	0.018	160	37.163	5.603	3	40.667	0.577	151	3	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	2:101911444	T	NA	133	0	133	37.444	5.578	0	0	0	127	0	RNF149	exonic	nonsynonymous_SNV
MB_Group4_T3--1	2:170939691	A	T	58	0.069	54	36.574	6.933	4	37.500	3.000	47	4	UBR3	UTR3	NA
MB_Group4_T3--2	2:170939691	A	NA	47	0	45	37.600	6.290	0	0	0	42	0	UBR3	UTR3	NA
MB_Group4_T3--3	2:170939691	A	T	27	0.037	26	38.000	4.147	1	34.000	0.000	25	1	UBR3	UTR3	NA
MB_Group4_T3--4	2:170939691	A	NA	46	0	45	38.111	4.206	0	0	0	44	0	UBR3	UTR3	NA
MB_Group4_T3--5	2:170939691	A	NA	33	0	32	38.406	2.815	0	0	0	32	0	UBR3	UTR3	NA
MB_Group4_T3--6	2:170939691	A	T	45	0.178	37	38.919	2.803	8	38.375	3.159	37	8	UBR3	UTR3	NA
MB_Group4_T3--7	2:170939691	A	T	28	0.036	27	37.185	4.490	1	31.000	0.000	25	1	UBR3	UTR3	NA
MB_Group4_T3--8	2:170939691	A	T	39	0.077	36	37.917	4.544	3	33.667	0.577	33	3	UBR3	UTR3	NA
MB_Group4_T3--GL	2:170939691	A	NA	34	0	34	39.118	2.739	0	0	0	34	0	UBR3	UTR3	NA
MB_Group4_T3--1	2:170939692	T	A	57	0.070	52	37.192	4.370	4	38.500	5.000	48	4	UBR3	UTR3	NA
MB_Group4_T3--2	2:170939692	T	A	48	0.042	44	37.023	5.576	2	31.000	0.000	39	2	UBR3	UTR3	NA
MB_Group4_T3--3	2:170939692	T	A	28	0.071	26	38.000	5.161	2	34.000	0.000	24	2	UBR3	UTR3	NA
MB_Group4_T3--4	2:170939692	T	A	46	0.043	43	37.512	4.997	2	36.000	7.071	41	2	UBR3	UTR3	NA
MB_Group4_T3--5	2:170939692	T	A	33	0.061	31	37.774	4.295	2	33.000	9.899	29	1	UBR3	UTR3	NA
MB_Group4_T3--6	2:170939692	T	A	45	0.178	37	38.486	3.461	8	38.750	3.105	36	8	UBR3	UTR3	NA
MB_Group4_T3--7	2:170939692	T	A	27	0.037	25	37.480	5.386	1	33.000	0.000	23	1	UBR3	UTR3	NA
MB_Group4_T3--8	2:170939692	T	A	39	0.077	35	37.600	4.237	3	33.000	1.732	33	3	UBR3	UTR3	NA
MB_Group4_T3--GL	2:170939692	T	NA	33	0	33	39.091	2.185	0	0	0	33	0	UBR3	UTR3	NA
MB_Group4_T3--1	2:179968120	T	NA	81	0	81	36.173	7.092	0	0	0	76	0	SESTD1	UTR3	NA
MB_Group4_T3--2	2:179968120	T	NA	85	0	84	35.690	5.364	0	0	0	75	0	SESTD1	UTR3	NA
MB_Group4_T3--3	2:179968120	T	NA	66	0	66	35.727	8.011	0	0	0	60	0	SESTD1	UTR3	NA
MB_Group4_T3--4	2:179968120	T	NA	65	0	65	36.246	5.921	0	0	0	57	0	SESTD1	UTR3	NA
MB_Group4_T3--5	2:179968120	T	G	49	0.265	36	34.944	9.508	13	35.154	5.771	32	11	SESTD1	UTR3	NA
MB_Group4_T3--6	2:179968120	T	NA	44	0	44	36.409	7.118	0	0	0	41	0	SESTD1	UTR3	NA
MB_Group4_T3--7	2:179968120	T	NA	64	0	64	36.906	5.215	0	0	0	59	0	SESTD1	UTR3	NA
MB_Group4_T3--8	2:179968120	T	NA	80	0	79	37.937	3.600	0	0	0	76	0	SESTD1	UTR3	NA
MB_Group4_T3--GL	2:179968120	T	NA	77	0	77	36.532	5.365	0	0	0	72	0	SESTD1	UTR3	NA
MB_Group4_T3--1	2:24261874	C	A	95	0.358	61	34.393	9.576	34	35.912	4.488	53	31	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--2	2:24261874	C	A	86	0.360	55	35.309	5.343	31	37.129	6.898	47	30	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--3	2:24261874	C	A	66	0.500	33	36.758	3.446	33	37.152	3.053	32	33	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--4	2:24261874	C	A	121	0.529	57	35.140	7.027	64	35.141	8.029	50	54	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--5	2:24261874	C	A	81	0.395	49	35.857	4.349	32	35.625	6.666	46	29	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--6	2:24261874	C	A	104	0.385	63	36.683	4.446	40	34.975	6.216	60	33	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--7	2:24261874	C	A	59	0.288	42	35.929	6.326	17	37.000	2.550	39	17	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--8	2:24261874	C	A	125	0.448	69	35.870	6.219	56	36.125	6.991	62	52	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	2:24261874	C	NA	150	0	149	36.752	6.048	0	0	0	135	0	C2orf44	exonic	nonsynonymous_SNV
MB_Group4_T3--1	2:7403641	T	C	49	0.163	41	34.610	10.183	8	35.500	2.928	35	8	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--2	2:7403641	T	C	56	0.054	53	34.491	9.063	3	33.333	2.082	44	3	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--3	2:7403641	T	C	47	0.128	41	35.561	6.849	6	32.500	4.037	36	5	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--4	2:7403641	T	C	44	0.068	41	36.024	5.461	3	37.000	0.000	36	3	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--5	2:7403641	T	C	39	0.128	34	34.000	10.201	5	20.800	12.478	29	1	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--6	2:7403641	T	C	45	0.089	40	35.775	8.604	4	32.250	2.062	35	4	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--7	2:7403641	T	C	38	0.105	34	34.647	5.757	4	35.500	1.732	28	4	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--8	2:7403641	T	C	34	0.176	28	38.607	2.061	6	35.167	2.137	28	6	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--GL	2:7403641	T	NA	45	0	45	33.578	9.089	0	0	0	34	0	AC019048.1(dist=185630),LOC100506274(dist=157751)	intergenic	NA
MB_Group4_T3--1	3:130109923	T	G	32	0.031	31	36.161	8.034	1	34.000	0.000	27	1	COL6A5	intronic	NA
MB_Group4_T3--2	3:130109923	T	NA	27	0	27	36.926	4.690	0	0	0	24	0	COL6A5	intronic	NA
MB_Group4_T3--3	3:130109923	T	NA	36	0	36	35.583	7.784	0	0	0	33	0	COL6A5	intronic	NA
MB_Group4_T3--4	3:130109923	T	G	26	0.192	21	35.095	8.642	5	32.800	3.271	18	4	COL6A5	intronic	NA
MB_Group4_T3--5	3:130109923	T	G	40	0.025	39	34.103	10.239	1	31.000	0.000	33	1	COL6A5	intronic	NA
MB_Group4_T3--6	3:130109923	T	NA	30	0	30	36.733	4.448	0	0	0	27	0	COL6A5	intronic	NA
MB_Group4_T3--7	3:130109923	T	NA	19	0	19	34.211	9.144	0	0	0	16	0	COL6A5	intronic	NA
MB_Group4_T3--8	3:130109923	T	NA	27	0	27	37.704	3.646	0	0	0	26	0	COL6A5	intronic	NA
MB_Group4_T3--GL	3:130109923	T	NA	44	0	44	34.682	9.890	0	0	0	38	0	COL6A5	intronic	NA
MB_Group4_T3--1	3:130116594	T	NA	56	0	56	35.161	7.365	0	0	0	47	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--2	3:130116594	T	NA	54	0	54	33.852	8.682	0	0	0	46	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--3	3:130116594	T	A	58	0.172	48	35.250	7.189	10	34.300	8.994	43	9	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--4	3:130116594	T	NA	63	0	63	34.270	7.730	0	0	0	57	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--5	3:130116594	T	NA	63	0	63	33.222	9.484	0	0	0	50	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--6	3:130116594	T	NA	46	0	46	33.804	9.815	0	0	0	37	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--7	3:130116594	T	NA	51	0	51	34.431	9.021	0	0	0	44	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--8	3:130116594	T	NA	55	0	55	36.364	6.832	0	0	0	52	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	3:130116594	T	NA	56	0	56	34.839	7.771	0	0	0	52	0	COL6A5	exonic	nonsynonymous_SNV
MB_Group4_T3--1	4:11398940	G	A	66	0.045	62	34.500	9.507	3	37.667	0.577	54	3	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--2	4:11398940	G	NA	65	0	65	35.477	7.408	0	0	0	58	0	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--3	4:11398940	G	A	50	0.020	49	34.041	10.380	1	38.000	0.000	42	1	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--4	4:11398940	G	NA	51	0	51	35.176	8.948	0	0	0	44	0	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--5	4:11398940	G	NA	50	0	50	33.440	9.148	0	0	0	41	0	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--6	4:11398940	G	A	46	0.283	33	34.939	8.948	13	36.769	5.630	28	12	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--7	4:11398940	G	NA	57	0	57	35.281	7.817	0	0	0	52	0	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--8	4:11398940	G	A	65	0.046	62	34.306	7.005	3	38.000	2.646	49	3	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--GL	4:11398940	G	NA	86	0	86	36.407	5.223	0	0	0	79	0	MIR572(dist=28395),HS3ST1(dist=1048)	intergenic	NA
MB_Group4_T3--1	4:183721529	G	A	51	0.098	44	30.432	12.438	5	29.000	5.099	33	4	TENM3	UTR3	NA
MB_Group4_T3--2	4:183721529	G	A	35	0.200	28	28.607	13.242	7	30.571	8.696	21	5	TENM3	UTR3	NA
MB_Group4_T3--3	4:183721529	G	A	39	0.103	35	30.829	10.993	4	38.000	2.944	26	4	TENM3	UTR3	NA
MB_Group4_T3--4	4:183721529	G	A	52	0.019	51	31.216	9.938	1	29.000	0.000	38	0	TENM3	UTR3	NA
MB_Group4_T3--5	4:183721529	G	NA	28	0	28	27.214	14.182	0	0	0	19	0	TENM3	UTR3	NA
MB_Group4_T3--6	4:183721529	G	NA	40	0	39	31.026	9.278	0	0	0	27	0	TENM3	UTR3	NA
MB_Group4_T3--7	4:183721529	G	A	37	0.324	25	31.880	9.740	12	30.750	8.159	21	8	TENM3	UTR3	NA
MB_Group4_T3--8	4:183721529	G	A	44	0.114	39	32.205	7.016	5	22.000	18.276	30	3	TENM3	UTR3	NA
MB_Group4_T3--GL	4:183721529	G	NA	52	0	52	29.731	13.387	0	0	0	41	0	TENM3	UTR3	NA
MB_Group4_T3--1	4:8358863	C	T	122	0.008	119	35.504	6.181	1	41.000	0.000	107	1	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--2	4:8358863	C	T	112	0.179	91	37.198	5.262	20	35.400	8.905	86	17	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--3	4:8358863	C	NA	144	0	143	35.993	7.379	0	0	0	126	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--4	4:8358863	C	NA	126	0	126	36.714	5.749	0	0	0	117	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--5	4:8358863	C	NA	114	0	114	36.412	6.086	0	0	0	107	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--6	4:8358863	C	NA	146	0	146	36.315	6.473	0	0	0	137	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--7	4:8358863	C	NA	82	0	81	36.988	5.919	0	0	0	76	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--8	4:8358863	C	NA	137	0	137	36.058	7.837	0	0	0	123	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--GL	4:8358863	C	NA	176	0	176	36.773	7.182	0	0	0	164	0	HTRA3(dist=50025),ACOX3(dist=9146)	intergenic	NA
MB_Group4_T3--1	5:140778735	T	C	229	0.162	192	36.172	7.235	37	36.676	5.553	175	31	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--2	5:140778735	T	C	228	0.009	226	36.496	6.356	2	35.500	3.536	209	2	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--3	5:140778735	T	C	176	0.165	147	37.041	5.956	29	38.517	2.502	138	29	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--4	5:140778735	T	C	180	0.511	88	35.932	6.736	92	36.478	5.771	78	88	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--5	5:140778735	T	C	153	0.562	66	37.167	4.108	86	36.744	5.211	62	77	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--6	5:140778735	T	C	167	0.455	91	37.549	6.134	76	37.539	5.335	86	73	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--7	5:140778735	T	C	223	0.009	220	36.368	6.046	2	25.000	21.213	200	1	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--8	5:140778735	T	C	230	0.283	165	37.097	5.530	65	37.938	3.441	151	64	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--GL	5:140778735	T	NA	204	0	203	37.049	5.363	0	0	0	190	0	PCDHGB5	exonic	synonymous_SNV
MB_Group4_T3--1	5:169097520	G	A	66	0.045	63	37.810	4.802	3	39.333	1.155	60	3	DOCK2	intronic	NA
MB_Group4_T3--2	5:169097520	G	A	72	0.028	69	38.725	2.765	2	37.000	1.414	69	2	DOCK2	intronic	NA
MB_Group4_T3--3	5:169097520	G	A	57	0.088	52	38.077	3.772	5	39.000	0.707	49	5	DOCK2	intronic	NA
MB_Group4_T3--4	5:169097520	G	A	31	0.194	25	38.800	3.055	6	31.667	14.868	25	5	DOCK2	intronic	NA
MB_Group4_T3--5	5:169097520	G	A	37	0.135	32	36.469	7.287	5	37.600	5.459	30	4	DOCK2	intronic	NA
MB_Group4_T3--6	5:169097520	G	A	43	0.023	42	36.190	6.876	1	38.000	0.000	37	1	DOCK2	intronic	NA
MB_Group4_T3--7	5:169097520	G	A	56	0.089	51	38.667	2.833	5	36.400	2.302	51	5	DOCK2	intronic	NA
MB_Group4_T3--8	5:169097520	G	A	43	0.093	39	38.179	3.698	4	37.500	3.317	37	4	DOCK2	intronic	NA
MB_Group4_T3--GL	5:169097520	G	NA	55	0	54	37.889	3.278	0	0	0	53	0	DOCK2	intronic	NA
MB_Group4_T3--1	5:5464516	G	A	175	0.223	136	35.088	7.743	39	33.282	9.434	121	32	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--2	5:5464516	G	A	215	0.363	136	33.956	9.070	78	34.038	9.112	117	70	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--3	5:5464516	G	A	181	0.171	149	33.879	9.625	31	35.452	6.201	129	25	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--4	5:5464516	G	A	147	0.014	145	34.559	7.843	2	34.000	1.414	123	2	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--5	5:5464516	G	NA	114	0	114	35.254	7.841	0	0	0	101	0	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--6	5:5464516	G	NA	119	0	119	35.244	7.244	0	0	0	110	0	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--7	5:5464516	G	A	180	0.328	120	35.625	7.678	59	35.966	7.699	107	54	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--8	5:5464516	G	A	141	0.092	126	35.952	7.115	13	37.077	2.597	115	13	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--GL	5:5464516	G	NA	139	0	139	34.374	9.261	0	0	0	121	0	KIAA0947	exonic	nonsynonymous_SNV
MB_Group4_T3--1	6:12292448	G	A	39	0.128	33	33.879	9.443	5	37.400	0.548	27	5	EDN1	intronic	NA
MB_Group4_T3--2	6:12292448	G	A	47	0.021	46	35.413	7.371	1	41.000	0.000	40	1	EDN1	intronic	NA
MB_Group4_T3--3	6:12292448	G	A	43	0.163	36	35.917	5.411	7	34.714	14.454	32	6	EDN1	intronic	NA
MB_Group4_T3--4	6:12292448	G	A	40	0.175	32	37.594	4.324	7	30.571	13.290	31	5	EDN1	intronic	NA
MB_Group4_T3--5	6:12292448	G	A	36	0.194	29	36.759	4.197	7	38.429	2.992	27	7	EDN1	intronic	NA
MB_Group4_T3--6	6:12292448	G	A	43	0.326	29	34.034	9.545	14	33.214	8.737	25	12	EDN1	intronic	NA
MB_Group4_T3--7	6:12292448	G	NA	38	0	38	37.026	3.349	0	0	0	37	0	EDN1	intronic	NA
MB_Group4_T3--8	6:12292448	G	A	27	0.074	25	36.200	8.124	2	35.500	2.121	23	2	EDN1	intronic	NA
MB_Group4_T3--GL	6:12292448	G	NA	44	0	44	34.568	7.660	0	0	0	38	0	EDN1	intronic	NA
MB_Group4_T3--1	6:36699843	G	A	43	0.116	38	33.395	8.976	5	35.800	3.701	34	5	RAB44	exonic	synonymous_SNV
MB_Group4_T3--2	6:36699843	G	A	36	0.028	35	33.771	9.107	1	37.000	0.000	30	1	RAB44	exonic	synonymous_SNV
MB_Group4_T3--3	6:36699843	G	A	48	0.125	42	33.643	10.404	6	36.167	6.145	36	5	RAB44	exonic	synonymous_SNV
MB_Group4_T3--4	6:36699843	G	A	53	0.226	41	32.756	8.777	12	35.417	4.295	31	11	RAB44	exonic	synonymous_SNV
MB_Group4_T3--5	6:36699843	G	A	39	0.385	24	32.958	10.306	15	33.600	9.410	20	14	RAB44	exonic	synonymous_SNV
MB_Group4_T3--6	6:36699843	G	A	41	0.317	28	33.750	5.140	13	31.615	10.595	24	9	RAB44	exonic	synonymous_SNV
MB_Group4_T3--7	6:36699843	G	NA	24	0	23	33.261	9.171	0	0	0	18	0	RAB44	exonic	synonymous_SNV
MB_Group4_T3--8	6:36699843	G	A	40	0.075	37	33.108	11.007	3	35.667	4.041	32	3	RAB44	exonic	synonymous_SNV
MB_Group4_T3--GL	6:36699843	G	NA	56	0	56	33.339	9.180	0	0	0	47	0	RAB44	exonic	synonymous_SNV
MB_Group4_T3--1	6:90392993	G	T	38	0.105	34	32.647	8.315	4	27.500	13.478	27	3	MDN1	exonic	stopgain_SNV
MB_Group4_T3--2	6:90392993	G	T	29	0.310	20	31.000	11.823	9	36.444	2.506	14	9	MDN1	exonic	stopgain_SNV
MB_Group4_T3--3	6:90392993	G	T	35	0.057	33	33.576	7.575	2	29.000	15.556	25	1	MDN1	exonic	stopgain_SNV
MB_Group4_T3--4	6:90392993	G	NA	39	0	38	36.737	5.076	0	0	0	37	0	MDN1	exonic	stopgain_SNV
MB_Group4_T3--5	6:90392993	G	NA	28	0	28	36.321	5.085	0	0	0	26	0	MDN1	exonic	stopgain_SNV
MB_Group4_T3--6	6:90392993	G	NA	32	0	32	34.906	8.971	0	0	0	29	0	MDN1	exonic	stopgain_SNV
MB_Group4_T3--7	6:90392993	G	NA	13	0	12	32.083	9.931	0	0	0	8	0	MDN1	exonic	stopgain_SNV
MB_Group4_T3--8	6:90392993	G	T	44	0.068	41	32.756	10.089	3	30.667	7.506	33	2	MDN1	exonic	stopgain_SNV
MB_Group4_T3--GL	6:90392993	G	NA	38	0	37	35.811	7.753	0	0	0	34	0	MDN1	exonic	stopgain_SNV
MB_Group4_T3--1	7:106546992	T	C	66	0.045	63	35.841	8.334	3	35.333	5.132	55	3	PIK3CG	UTR3	NA
MB_Group4_T3--2	7:106546992	T	C	79	0.203	63	38.016	5.110	16	38.500	3.141	59	16	PIK3CG	UTR3	NA
MB_Group4_T3--3	7:106546992	T	C	62	0.113	55	37.291	5.984	7	31.429	14.140	51	5	PIK3CG	UTR3	NA
MB_Group4_T3--4	7:106546992	T	NA	84	0	84	38.179	4.105	0	0	0	80	0	PIK3CG	UTR3	NA
MB_Group4_T3--5	7:106546992	T	NA	78	0	78	36.667	6.619	0	0	0	71	0	PIK3CG	UTR3	NA
MB_Group4_T3--6	7:106546992	T	NA	81	0	81	37.753	4.499	0	0	0	77	0	PIK3CG	UTR3	NA
MB_Group4_T3--7	7:106546992	T	C	54	0.296	38	37.237	7.175	16	38.250	2.236	36	16	PIK3CG	UTR3	NA
MB_Group4_T3--8	7:106546992	T	C	90	0.044	86	37.791	4.736	4	39.000	3.367	82	4	PIK3CG	UTR3	NA
MB_Group4_T3--GL	7:106546992	T	NA	52	0	52	38.981	3.039	0	0	0	51	0	PIK3CG	UTR3	NA
MB_Group4_T3--1	7:128441481	C	T	90	0.300	63	32.032	10.529	27	34.037	9.697	48	23	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--2	7:128441481	C	T	60	0.467	32	36.438	4.212	28	33.857	7.901	30	22	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--3	7:128441481	C	T	78	0.231	60	32.650	10.251	18	32.611	12.001	48	14	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--4	7:128441481	C	T	106	0.019	103	33.485	8.547	2	39.500	2.121	84	2	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--5	7:128441481	C	NA	86	0	86	33.093	9.437	0	0	0	73	0	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--6	7:128441481	C	NA	99	0	99	34.424	8.134	0	0	0	86	0	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--7	7:128441481	C	T	67	0.687	21	31.667	8.996	46	36.565	6.249	15	44	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--8	7:128441481	C	T	109	0.174	90	33.867	8.730	19	35.579	6.239	73	15	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--GL	7:128441481	C	NA	89	0	88	34.057	8.997	0	0	0	74	0	CCDC136	exonic	synonymous_SNV
MB_Group4_T3--1	9:137982234	G	T	40	0.125	35	34.800	6.915	5	30.000	7.314	30	3	OLFM1	intronic	NA
MB_Group4_T3--2	9:137982234	G	NA	40	0	37	33.973	8.729	0	0	0	32	0	OLFM1	intronic	NA
MB_Group4_T3--3	9:137982234	G	T	35	0.171	29	31.483	9.742	6	34.833	3.061	23	6	OLFM1	intronic	NA
MB_Group4_T3--4	9:137982234	G	T	38	0.053	36	34.472	8.981	2	36.000	5.657	31	2	OLFM1	intronic	NA
MB_Group4_T3--5	9:137982234	G	T	33	0.212	26	33.731	7.368	7	36.000	2.236	21	7	OLFM1	intronic	NA
MB_Group4_T3--6	9:137982234	G	T	38	0.026	37	31.541	11.765	1	35.000	0.000	27	1	OLFM1	intronic	NA
MB_Group4_T3--7	9:137982234	G	T	33	0.182	27	33.593	11.205	6	31.333	12.078	24	5	OLFM1	intronic	NA
MB_Group4_T3--8	9:137982234	G	T	35	0.029	34	33.912	9.937	1	34.000	0.000	28	1	OLFM1	intronic	NA
MB_Group4_T3--GL	9:137982234	G	NA	41	0	40	32.975	9.952	0	0	0	34	0	OLFM1	intronic	NA
MB_Group4_T3--1	9:138899404	C	G	20	0.200	16	31.812	9.914	4	22.250	16.029	12	2	NACC2	UTR3	NA
MB_Group4_T3--2	9:138899404	C	G	16	0.125	14	36.929	3.583	2	28.500	2.121	14	1	NACC2	UTR3	NA
MB_Group4_T3--3	9:138899404	C	G	22	0.045	21	33.952	8.964	1	30.000	0.000	18	1	NACC2	UTR3	NA
MB_Group4_T3--4	9:138899404	C	G	28	0.143	24	34.500	8.668	4	32.250	2.217	20	4	NACC2	UTR3	NA
MB_Group4_T3--5	9:138899404	C	G	17	0.294	12	31.000	13.967	5	32.000	3.082	9	5	NACC2	UTR3	NA
MB_Group4_T3--6	9:138899404	C	G	15	0.267	11	30.636	12.468	4	33.000	2.449	7	4	NACC2	UTR3	NA
MB_Group4_T3--7	9:138899404	C	G	10	0.100	9	36.333	3.464	1	35.000	0.000	9	1	NACC2	UTR3	NA
MB_Group4_T3--8	9:138899404	C	G	25	0.120	22	34.591	10.922	3	35.667	1.155	20	3	NACC2	UTR3	NA
MB_Group4_T3--GL	9:138899404	C	NA	36	0	35	35.857	5.140	0	0	0	33	0	NACC2	UTR3	NA
MB_Group4_T3--1	9:139566553	A	C	35	0.229	26	31.115	9.501	8	29.375	17.096	18	6	EGFL7	intronic	NA
MB_Group4_T3--2	9:139566553	A	NA	36	0	34	31.647	10.117	0	0	0	27	0	EGFL7	intronic	NA
MB_Group4_T3--3	9:139566553	A	C	39	0.282	28	31.429	10.035	11	28.545	13.837	22	7	EGFL7	intronic	NA
MB_Group4_T3--4	9:139566553	A	C	47	0.426	27	32.111	6.339	20	36.000	5.849	20	18	EGFL7	intronic	NA
MB_Group4_T3--5	9:139566553	A	C	52	0.462	27	32.852	11.069	24	29.667	15.153	22	17	EGFL7	intronic	NA
MB_Group4_T3--6	9:139566553	A	C	46	0.543	21	29.619	12.619	25	30.200	12.080	14	18	EGFL7	intronic	NA
MB_Group4_T3--7	9:139566553	A	NA	26	0	25	30.960	11.197	0	0	0	18	0	EGFL7	intronic	NA
MB_Group4_T3--8	9:139566553	A	C	38	0.316	26	27.962	13.058	12	28.750	13.805	16	8	EGFL7	intronic	NA
MB_Group4_T3--GL	9:139566553	A	NA	55	0	55	30.236	10.724	0	0	0	42	0	EGFL7	intronic	NA
MB_Group4_T3--1	9:33391702	A	T	33	0.091	30	33.333	11.421	3	32.333	2.082	24	3	AQP7	intronic	NA
MB_Group4_T3--2	9:33391702	A	T	37	0.216	29	37.655	3.477	8	33.250	2.121	27	7	AQP7	intronic	NA
MB_Group4_T3--3	9:33391702	A	T	43	0.186	35	35.571	5.381	8	24.500	14.132	30	5	AQP7	intronic	NA
MB_Group4_T3--4	9:33391702	A	T	54	0.093	49	35.041	8.737	5	31.000	8.337	45	4	AQP7	intronic	NA
MB_Group4_T3--5	9:33391702	A	T	22	0.045	21	37.143	3.425	1	31.000	0.000	21	1	AQP7	intronic	NA
MB_Group4_T3--6	9:33391702	A	NA	46	0	41	36.049	6.156	0	0	0	37	0	AQP7	intronic	NA
MB_Group4_T3--7	9:33391702	A	T	25	0.120	22	36.909	4.374	3	21.333	16.743	21	2	AQP7	intronic	NA
MB_Group4_T3--8	9:33391702	A	T	35	0.086	32	33.719	10.556	3	32.000	1.732	29	3	AQP7	intronic	NA
MB_Group4_T3--GL	9:33391702	A	NA	40	0	37	36.757	4.239	0	0	0	35	0	AQP7	intronic	NA
MB_Group4_T3--1	9:33395323	A	G	49	0.061	46	32.457	9.990	3	35.333	2.082	36	3	AQP7	intronic	NA
MB_Group4_T3--2	9:33395323	A	G	31	0.226	24	34.292	6.061	7	38.286	3.450	19	7	AQP7	intronic	NA
MB_Group4_T3--3	9:33395323	A	G	34	0.118	30	32.900	9.253	4	32.500	10.376	26	3	AQP7	intronic	NA
MB_Group4_T3--4	9:33395323	A	G	53	0.075	49	33.388	10.261	4	36.250	4.113	41	4	AQP7	intronic	NA
MB_Group4_T3--5	9:33395323	A	G	29	0.069	27	36.148	3.919	2	23.500	21.920	26	1	AQP7	intronic	NA
MB_Group4_T3--6	9:33395323	A	NA	62	0	54	34.611	8.062	0	0	0	46	0	AQP7	intronic	NA
MB_Group4_T3--7	9:33395323	A	G	23	0.043	22	32.455	11.899	1	32.000	0.000	17	1	AQP7	intronic	NA
MB_Group4_T3--8	9:33395323	A	G	46	0.087	42	36.119	8.373	4	34.750	4.856	39	4	AQP7	intronic	NA
MB_Group4_T3--GL	9:33395323	A	NA	62	0	62	35.548	6.835	0	0	0	56	0	AQP7	intronic	NA
MB_Group4_T3--1	GL000205.1:117657	G	A	18	0.167	14	38.143	2.598	3	22.333	10.116	14	1	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--2	GL000205.1:117657	G	A	32	0.312	21	35.238	4.784	10	31.700	5.078	19	7	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--3	GL000205.1:117657	G	A	20	0.200	14	33.714	5.703	4	35.500	1.915	12	4	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--4	GL000205.1:117657	G	A	33	0.212	25	33.120	9.748	7	32.714	4.680	21	5	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--5	GL000205.1:117657	G	A	21	0.143	16	33.500	9.529	3	36.667	1.528	13	3	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--6	GL000205.1:117657	G	A	26	0.269	16	29.625	12.355	7	29.571	10.998	11	5	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--7	GL000205.1:117657	G	A	21	0.238	15	35.333	9.861	5	27.400	10.991	14	3	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--8	GL000205.1:117657	G	A	22	0.182	16	36.000	5.190	4	21.250	22.232	15	2	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--GL	GL000205.1:117657	G	NA	37	0	33	37.212	4.211	0	0	0	31	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_Group4_T3--1	X:70316091	A	C	25	0.160	21	33.190	8.948	4	37.000	2.160	17	4	FOXO4	UTR5	NA
MB_Group4_T3--2	X:70316091	A	C	19	0.263	14	34.000	9.695	5	37.600	4.561	13	5	FOXO4	UTR5	NA
MB_Group4_T3--3	X:70316091	A	C	25	0.160	21	34.143	8.828	4	38.750	1.708	17	4	FOXO4	UTR5	NA
MB_Group4_T3--4	X:70316091	A	C	29	0.034	28	34.786	6.471	1	41.000	0.000	25	1	FOXO4	UTR5	NA
MB_Group4_T3--5	X:70316091	A	NA	20	0	20	34.700	8.927	0	0	0	17	0	FOXO4	UTR5	NA
MB_Group4_T3--6	X:70316091	A	NA	19	0	19	35.474	6.527	0	0	0	16	0	FOXO4	UTR5	NA
MB_Group4_T3--7	X:70316091	A	C	14	0.286	10	33.300	11.681	4	34.750	4.646	8	4	FOXO4	UTR5	NA
MB_Group4_T3--8	X:70316091	A	C	41	0.024	40	35.625	8.320	1	40.000	0.000	36	1	FOXO4	UTR5	NA
MB_Group4_T3--GL	X:70316091	A	NA	47	0	47	32.447	10.436	0	0	0	36	0	FOXO4	UTR5	NA
MB_Group4_T3--1	X:9684712	G	NA	43	0	42	27.690	11.441	0	0	0	22	0	TBL1X	UTR3	NA
MB_Group4_T3--2	X:9684712	G	NA	32	0	30	29.700	9.731	0	0	0	18	0	TBL1X	UTR3	NA
MB_Group4_T3--3	X:9684712	G	T	42	0.024	39	29.795	11.207	1	27.000	0.000	25	0	TBL1X	UTR3	NA
MB_Group4_T3--4	X:9684712	G	T	54	0.167	43	31.953	11.034	9	27.556	6.729	31	4	TBL1X	UTR3	NA
MB_Group4_T3--5	X:9684712	G	T	37	0.054	35	28.486	12.145	2	30.000	0.000	21	2	TBL1X	UTR3	NA
MB_Group4_T3--6	X:9684712	G	T	55	0.145	44	29.114	9.297	8	29.250	7.924	26	7	TBL1X	UTR3	NA
MB_Group4_T3--7	X:9684712	G	NA	27	0	26	29.423	9.546	0	0	0	18	0	TBL1X	UTR3	NA
MB_Group4_T3--8	X:9684712	G	T	64	0.078	57	29.368	11.231	5	27.400	14.398	36	4	TBL1X	UTR3	NA
MB_Group4_T3--GL	X:9684712	G	NA	62	0	58	26.672	11.261	0	0	0	29	0	TBL1X	UTR3	NA
MB_Group4_T4--1	10:64160586	G	NA	49	0	44	37.818	4.167	0	0	0	42	0	ZNF365	UTR3	NA
MB_Group4_T4--2	10:64160586	G	NA	76	0	75	37.560	4.754	0	0	0	70	0	ZNF365	UTR3	NA
MB_Group4_T4--3	10:64160586	G	T	82	0.037	77	37.104	5.968	3	39.333	2.082	71	3	ZNF365	UTR3	NA
MB_Group4_T4--4	10:64160586	G	T	60	0.017	56	37.589	3.647	1	37.000	0.000	54	1	ZNF365	UTR3	NA
MB_Group4_T4--5	10:64160586	G	T	36	0.444	20	38.950	1.669	16	37.125	4.660	20	14	ZNF365	UTR3	NA
MB_Group4_T4--GL	10:64160586	G	NA	90	0	87	37.184	6.137	0	0	0	82	0	ZNF365	UTR3	NA
MB_Group4_T4--1	11:20122489	C	T	47	0.340	31	36.226	4.609	16	38.188	1.974	29	16	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--2	11:20122489	C	T	84	0.024	81	36.864	6.381	2	29.500	14.849	75	1	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--3	11:20122489	C	T	106	0.066	99	36.960	6.276	7	36.143	5.242	92	6	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--4	11:20122489	C	NA	107	0	107	37.449	4.642	0	0	0	101	0	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--5	11:20122489	C	NA	48	0	48	37.750	4.339	0	0	0	46	0	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	11:20122489	C	NA	83	0	83	37.048	5.323	0	0	0	77	0	NAV2	exonic	nonsynonymous_SNV
MB_Group4_T4--1	11:5264348	A	C	52	0.115	46	36.435	8.145	6	37.500	4.324	42	6	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--2	11:5264348	A	C	77	0.026	75	37.507	6.224	2	33.000	7.071	70	1	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--3	11:5264348	A	C	86	0.047	81	37.481	7.025	4	40.000	1.414	78	4	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--4	11:5264348	A	NA	84	0	84	38.405	5.928	0	0	0	80	0	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--5	11:5264348	A	NA	38	0	38	37.711	3.609	0	0	0	38	0	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--GL	11:5264348	A	NA	92	0	92	38.348	3.827	0	0	0	87	0	HBBP1	ncRNA_exonic	NA
MB_Group4_T4--1	1:157803255	G	A	62	0.161	51	35.157	9.298	10	35.200	3.645	42	10	CD5L	exonic	stopgain_SNV
MB_Group4_T4--2	1:157803255	G	A	80	0.312	55	35.909	5.376	25	32.800	9.482	50	19	CD5L	exonic	stopgain_SNV
MB_Group4_T4--3	1:157803255	G	A	109	0.211	86	36.767	5.215	23	34.478	7.019	83	21	CD5L	exonic	stopgain_SNV
MB_Group4_T4--4	1:157803255	G	A	100	0.220	78	36.051	7.288	22	35.000	5.372	71	18	CD5L	exonic	stopgain_SNV
MB_Group4_T4--5	1:157803255	G	NA	41	0	41	36.171	5.933	0	0	0	38	0	CD5L	exonic	stopgain_SNV
MB_Group4_T4--GL	1:157803255	G	NA	70	0	70	36.243	6.508	0	0	0	63	0	CD5L	exonic	stopgain_SNV
MB_Group4_T4--1	11:92085297	C	NA	31	0	31	37.000	7.317	0	0	0	29	0	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--2	11:92085297	C	NA	42	0	42	38.024	3.829	0	0	0	41	0	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--3	11:92085297	C	T	64	0.078	59	36.559	6.417	5	37.800	4.970	53	4	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--4	11:92085297	C	T	61	0.016	60	36.817	7.196	1	40.000	0.000	57	1	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--5	11:92085297	C	T	29	0.172	24	35.542	7.223	5	38.600	3.782	20	5	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	11:92085297	C	NA	57	0	56	37.929	3.958	0	0	0	55	0	FAT3	exonic	nonsynonymous_SNV
MB_Group4_T4--1	1:204086191	A	NA	41	0	41	34.341	6.227	0	0	0	34	0	SOX13	intronic	NA
MB_Group4_T4--2	1:204086191	A	NA	44	0	43	32.512	10.232	0	0	0	36	0	SOX13	intronic	NA
MB_Group4_T4--3	1:204086191	A	T	38	0.026	36	35.083	5.872	1	38.000	0.000	29	1	SOX13	intronic	NA
MB_Group4_T4--4	1:204086191	A	T	68	0.015	67	33.746	9.788	1	36.000	0.000	55	1	SOX13	intronic	NA
MB_Group4_T4--5	1:204086191	A	T	22	0.182	18	32.833	8.382	4	37.250	3.862	15	4	SOX13	intronic	NA
MB_Group4_T4--GL	1:204086191	A	NA	48	0	48	34.604	8.384	0	0	0	42	0	SOX13	intronic	NA
MB_Group4_T4--1	12:106633973	T	C	92	0.152	78	37.154	5.748	14	36.214	3.886	72	14	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--2	12:106633973	T	C	109	0.009	108	37.157	5.271	1	34.000	0.000	104	1	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--3	12:106633973	T	NA	169	0	169	36.663	6.737	0	0	0	159	0	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--4	12:106633973	T	C	119	0.008	118	37.237	5.776	1	40.000	0.000	113	1	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--5	12:106633973	T	NA	61	0	61	35.967	7.153	0	0	0	56	0	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	12:106633973	T	NA	119	0	119	36.756	5.368	0	0	0	112	0	CKAP4	exonic	nonsynonymous_SNV
MB_Group4_T4--1	12:109270520	C	NA	55	0	55	37.236	5.735	0	0	0	54	0	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--2	12:109270520	C	NA	78	0	77	37.753	5.227	0	0	0	75	0	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--3	12:109270520	C	A	70	0.014	69	38.594	3.423	1	40.000	0.000	67	1	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--4	12:109270520	C	A	73	0.041	70	38.271	3.860	3	36.000	8.660	67	2	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--5	12:109270520	C	A	39	0.256	29	38.690	2.254	10	37.600	3.340	29	10	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--GL	12:109270520	C	NA	89	0	89	37.416	5.291	0	0	0	86	0	SSH1(dist=19161),DAO(dist=3337)	intergenic	NA
MB_Group4_T4--1	12:129467521	A	NA	42	0	42	37.381	5.328	0	0	0	41	0	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--2	12:129467521	A	NA	65	0	65	37.846	6.387	0	0	0	63	0	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--3	12:129467521	A	NA	78	0	78	38.821	3.234	0	0	0	77	0	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--4	12:129467521	A	G	73	0.137	63	38.698	3.921	10	36.800	9.543	62	9	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--5	12:129467521	A	NA	38	0	38	37.211	6.338	0	0	0	35	0	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--GL	12:129467521	A	NA	88	0	88	37.750	5.758	0	0	0	83	0	GLT1D1	exonic	synonymous_SNV
MB_Group4_T4--1	12:26943228	G	T	47	0.128	41	36.976	6.991	6	38.833	2.041	39	6	ITPR2	intronic	NA
MB_Group4_T4--2	12:26943228	G	T	72	0.181	59	38.169	4.579	13	37.538	3.821	55	13	ITPR2	intronic	NA
MB_Group4_T4--3	12:26943228	G	T	87	0.092	79	38.975	2.506	8	38.750	2.605	78	8	ITPR2	intronic	NA
MB_Group4_T4--4	12:26943228	G	NA	80	0	80	38.462	4.263	0	0	0	78	0	ITPR2	intronic	NA
MB_Group4_T4--5	12:26943228	G	NA	68	0	68	39.412	2.457	0	0	0	68	0	ITPR2	intronic	NA
MB_Group4_T4--GL	12:26943228	G	NA	89	0	89	38.371	3.556	0	0	0	86	0	ITPR2	intronic	NA
MB_Group4_T4--1	1:237923131	C	A	70	0.229	54	36.481	6.669	16	37.500	2.757	48	16	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--2	1:237923131	C	A	121	0.264	89	37.202	6.064	32	38.344	2.364	82	32	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--3	1:237923131	C	A	132	0.167	110	37.209	5.676	22	36.773	4.253	105	20	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--4	1:237923131	C	A	102	0.176	84	36.976	6.644	18	37.500	3.634	76	18	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--5	1:237923131	C	NA	49	0	49	37.980	3.683	0	0	0	48	0	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	1:237923131	C	NA	102	0	102	37.402	5.999	0	0	0	95	0	RYR2	exonic	nonsynonymous_SNV
MB_Group4_T4--1	12:49433205	C	NA	60	0	60	36.083	5.215	0	0	0	54	0	KMT2D	intronic	NA
MB_Group4_T4--2	12:49433205	C	NA	64	0	64	36.719	5.473	0	0	0	61	0	KMT2D	intronic	NA
MB_Group4_T4--3	12:49433205	C	T	58	0.034	56	37.036	3.658	2	35.500	6.364	55	2	KMT2D	intronic	NA
MB_Group4_T4--4	12:49433205	C	T	89	0.045	85	35.600	6.971	4	39.000	0.816	74	4	KMT2D	intronic	NA
MB_Group4_T4--5	12:49433205	C	T	43	0.233	33	35.212	8.207	10	37.800	3.190	29	10	KMT2D	intronic	NA
MB_Group4_T4--GL	12:49433205	C	NA	102	0	102	35.108	8.981	0	0	0	88	0	KMT2D	intronic	NA
MB_Group4_T4--1	12:6172241	A	C	12	0.083	11	34.182	5.400	1	41.000	0.000	9	1	VWF	intronic	NA
MB_Group4_T4--2	12:6172241	A	C	27	0.370	17	36.294	3.037	10	37.400	2.547	17	10	VWF	intronic	NA
MB_Group4_T4--3	12:6172241	A	C	47	0.298	33	33.545	8.686	14	37.214	5.041	28	13	VWF	intronic	NA
MB_Group4_T4--4	12:6172241	A	C	46	0.348	30	34.833	6.492	16	35.438	8.625	26	13	VWF	intronic	NA
MB_Group4_T4--5	12:6172241	A	NA	25	0	25	34.840	8.240	0	0	0	22	0	VWF	intronic	NA
MB_Group4_T4--GL	12:6172241	A	NA	42	0	41	34.195	10.233	0	0	0	36	0	VWF	intronic	NA
MB_Group4_T4--1	1:29064759	T	NA	30	0	30	40.233	1.478	0	0	0	30	0	YTHDF2	intronic	NA
MB_Group4_T4--2	1:29064759	T	NA	44	0	44	39.318	2.979	0	0	0	43	0	YTHDF2	intronic	NA
MB_Group4_T4--3	1:29064759	T	NA	35	0	35	38.600	3.664	0	0	0	33	0	YTHDF2	intronic	NA
MB_Group4_T4--4	1:29064759	T	C	34	0.176	28	37.679	4.423	6	38.000	3.688	26	6	YTHDF2	intronic	NA
MB_Group4_T4--5	1:29064759	T	NA	14	0	14	38.714	2.644	0	0	0	14	0	YTHDF2	intronic	NA
MB_Group4_T4--GL	1:29064759	T	NA	36	0	36	39.417	2.579	0	0	0	36	0	YTHDF2	intronic	NA
MB_Group4_T4--1	1:29446340	T	A	26	0.038	25	39.680	2.231	1	35.000	0.000	25	1	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--2	1:29446340	T	A	31	0.065	29	39.828	1.814	2	37.000	0.000	29	2	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--3	1:29446340	T	A	35	0.029	34	39.059	2.145	1	34.000	0.000	34	1	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--4	1:29446340	T	A	26	0.154	22	36.182	6.702	4	37.000	0.000	18	4	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--5	1:29446340	T	A	24	0.208	19	39.579	2.009	5	35.600	3.130	19	5	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--GL	1:29446340	T	NA	38	0	38	39.211	3.121	0	0	0	37	0	EPB41,TMEM200B	UTR3	NA
MB_Group4_T4--1	14:28734076	T	NA	104	0	103	36.641	5.672	0	0	0	95	0	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--2	14:28734076	T	NA	172	0	171	36.053	6.444	0	0	0	153	0	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--3	14:28734076	T	NA	196	0	194	36.526	5.335	0	0	0	180	0	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--4	14:28734076	T	A	163	0.227	126	35.651	7.133	37	36.378	7.209	114	34	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--5	14:28734076	T	NA	58	0	58	36.224	6.255	0	0	0	53	0	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--GL	14:28734076	T	NA	162	0	162	36.253	6.436	0	0	0	149	0	LINC00645(dist=625234),FOXG1(dist=502202)	intergenic	NA
MB_Group4_T4--1	15:44165057	G	T	11	0.091	10	38.500	2.321	1	34.000	0.000	10	1	FRMD5	UTR3	NA
MB_Group4_T4--2	15:44165057	G	T	19	0.053	18	38.389	2.704	1	37.000	0.000	18	1	FRMD5	UTR3	NA
MB_Group4_T4--3	15:44165057	G	T	35	0.171	29	36.379	6.428	6	35.000	3.521	27	5	FRMD5	UTR3	NA
MB_Group4_T4--4	15:44165057	G	NA	19	0	19	38.684	2.810	0	0	0	18	0	FRMD5	UTR3	NA
MB_Group4_T4--5	15:44165057	G	T	18	0.167	15	38.933	2.576	3	36.000	1.732	15	3	FRMD5	UTR3	NA
MB_Group4_T4--GL	15:44165057	G	NA	49	0	49	38.673	2.996	0	0	0	48	0	FRMD5	UTR3	NA
MB_Group4_T4--1	15:85383466	A	G	34	0.382	21	37.619	3.500	13	38.077	2.783	20	13	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--2	15:85383466	A	G	58	0.397	35	36.657	4.291	23	36.565	3.871	34	21	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--3	15:85383466	A	G	93	0.323	63	37.333	4.250	30	36.867	7.045	60	29	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--4	15:85383466	A	G	72	0.264	53	36.585	4.021	19	38.895	2.644	49	19	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--5	15:85383466	A	NA	32	0	32	36.188	7.164	0	0	0	30	0	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	15:85383466	A	NA	119	0	119	35.807	8.051	0	0	0	108	0	ALPK3	exonic	nonsynonymous_SNV
MB_Group4_T4--1	16:16170153	C	G	46	0.283	33	36.061	7.525	13	37.462	3.230	30	13	ABCC1	intronic	NA
MB_Group4_T4--2	16:16170153	C	G	58	0.310	40	37.725	3.366	18	37.167	3.989	38	17	ABCC1	intronic	NA
MB_Group4_T4--3	16:16170153	C	G	54	0.259	40	37.075	6.791	14	37.929	3.474	38	14	ABCC1	intronic	NA
MB_Group4_T4--4	16:16170153	C	G	74	0.176	61	38.049	4.056	13	37.308	3.945	60	12	ABCC1	intronic	NA
MB_Group4_T4--5	16:16170153	C	NA	27	0	27	36.037	7.793	0	0	0	25	0	ABCC1	intronic	NA
MB_Group4_T4--GL	16:16170153	C	NA	80	0	80	36.263	5.769	0	0	0	71	0	ABCC1	intronic	NA
MB_Group4_T4--1	16:2821988	T	G	20	0.150	17	33.294	8.244	3	35.333	1.528	13	3	TCEB2	UTR3	NA
MB_Group4_T4--2	16:2821988	T	NA	36	0	36	32.056	8.642	0	0	0	28	0	TCEB2	UTR3	NA
MB_Group4_T4--3	16:2821988	T	G	35	0.057	32	32.438	9.130	2	33.000	1.414	26	2	TCEB2	UTR3	NA
MB_Group4_T4--4	16:2821988	T	G	26	0.038	25	32.880	5.510	1	35.000	0.000	19	1	TCEB2	UTR3	NA
MB_Group4_T4--5	16:2821988	T	G	19	0.263	14	26.357	9.740	5	28.400	12.321	8	3	TCEB2	UTR3	NA
MB_Group4_T4--GL	16:2821988	T	NA	41	0	39	32.026	9.697	0	0	0	30	0	TCEB2	UTR3	NA
MB_Group4_T4--1	1:72400824	T	C	244	0.221	190	36.516	5.478	54	38.315	5.223	176	52	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--2	1:72400824	T	C	380	0.245	285	37.084	4.800	93	38.032	4.034	269	89	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--3	1:72400824	T	C	470	0.251	352	36.747	5.550	118	37.424	4.851	332	112	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--4	1:72400824	T	C	383	0.230	295	35.715	6.983	88	37.761	4.678	264	84	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--5	1:72400824	T	C	225	0.018	221	36.502	5.818	4	32.000	16.673	207	3	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	1:72400824	T	NA	322	0	317	36.476	6.001	0	0	0	296	0	NEGR1	exonic	nonsynonymous_SNV
MB_Group4_T4--1	17:28380286	A	T	56	0.125	49	39.102	2.852	7	39.429	2.440	47	7	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--2	17:28380286	A	T	66	0.242	50	38.020	3.473	16	38.688	3.945	50	15	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--3	17:28380286	A	T	83	0.096	75	37.867	3.881	8	40.375	0.916	72	8	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--4	17:28380286	A	T	78	0.090	71	37.141	7.869	7	39.714	1.380	66	7	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--5	17:28380286	A	NA	52	0	52	38.288	3.982	0	0	0	49	0	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	17:28380286	A	NA	57	0	56	36.536	6.904	0	0	0	49	0	EFCAB5	exonic	nonsynonymous_SNV
MB_Group4_T4--1	17:37762150	C	T	30	0.133	26	33.577	6.736	4	38.000	1.414	21	4	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--2	17:37762150	C	T	48	0.167	40	31.925	9.344	8	34.125	4.324	32	7	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--3	17:37762150	C	T	54	0.130	47	35.021	6.038	7	34.429	7.635	45	6	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--4	17:37762150	C	T	76	0.118	65	34.631	6.749	9	29.889	11.084	59	7	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--5	17:37762150	C	NA	32	0	32	33.719	9.292	0	0	0	28	0	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	17:37762150	C	NA	48	0	48	33.083	9.218	0	0	0	40	0	NEUROD2	exonic	nonsynonymous_SNV
MB_Group4_T4--1	17:38906799	C	NA	66	0	66	35.894	6.733	0	0	0	60	0	KRT25	exonic	synonymous_SNV
MB_Group4_T4--2	17:38906799	C	NA	121	0	121	36.579	6.816	0	0	0	114	0	KRT25	exonic	synonymous_SNV
MB_Group4_T4--3	17:38906799	C	T	109	0.018	107	36.505	6.125	2	39.500	2.121	98	2	KRT25	exonic	synonymous_SNV
MB_Group4_T4--4	17:38906799	C	NA	118	0	117	35.479	8.193	0	0	0	106	0	KRT25	exonic	synonymous_SNV
MB_Group4_T4--5	17:38906799	C	T	69	0.159	58	36.379	6.008	11	37.182	2.442	55	11	KRT25	exonic	synonymous_SNV
MB_Group4_T4--GL	17:38906799	C	NA	71	0	71	36.915	5.277	0	0	0	67	0	KRT25	exonic	synonymous_SNV
MB_Group4_T4--1	17:41561617	G	A	75	0.240	57	37.211	6.032	18	35.167	2.383	53	18	DHX8	intronic	NA
MB_Group4_T4--2	17:41561617	G	A	108	0.167	90	37.056	6.431	18	33.167	4.914	83	15	DHX8	intronic	NA
MB_Group4_T4--3	17:41561617	G	A	123	0.122	108	36.815	7.021	15	35.533	4.138	98	14	DHX8	intronic	NA
MB_Group4_T4--4	17:41561617	G	A	159	0.107	142	37.063	5.520	17	34.706	3.981	131	16	DHX8	intronic	NA
MB_Group4_T4--5	17:41561617	G	A	89	0.124	78	36.218	5.817	11	36.455	2.162	72	11	DHX8	intronic	NA
MB_Group4_T4--GL	17:41561617	G	NA	106	0	106	37.340	5.014	0	0	0	96	0	DHX8	intronic	NA
MB_Group4_T4--1	17:43192549	T	C	60	0.100	54	30.352	9.089	6	33.667	1.966	36	6	PLCD3	exonic	unknown
MB_Group4_T4--2	17:43192549	T	C	88	0.068	82	28.902	9.704	6	21.667	16.379	52	3	PLCD3	exonic	unknown
MB_Group4_T4--3	17:43192549	T	C	89	0.079	82	29.890	9.732	7	28.429	12.246	58	5	PLCD3	exonic	unknown
MB_Group4_T4--4	17:43192549	T	C	111	0.045	106	32.453	6.638	5	35.400	0.894	81	5	PLCD3	exonic	unknown
MB_Group4_T4--5	17:43192549	T	C	39	0.179	32	28.156	11.813	7	28.571	8.942	22	3	PLCD3	exonic	unknown
MB_Group4_T4--GL	17:43192549	T	NA	55	0	52	29.846	10.052	0	0	0	36	0	PLCD3	exonic	unknown
MB_Group4_T4--1	1:74834987	A	NA	119	0	119	37.134	5.274	0	0	0	113	0	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--2	1:74834987	A	NA	162	0	162	37.654	4.205	0	0	0	155	0	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--3	1:74834987	A	T	224	0.013	221	37.457	4.253	3	37.000	1.000	212	3	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--4	1:74834987	A	T	150	0.007	149	37.430	5.603	1	40.000	0.000	142	1	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--5	1:74834987	A	T	119	0.185	97	37.567	5.119	22	36.364	8.197	90	21	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--GL	1:74834987	A	NA	145	0	145	37.621	4.522	0	0	0	138	0	FPGT-TNNI3K,TNNI3K	intronic	NA
MB_Group4_T4--1	17:8736145	C	NA	16	0	16	32.500	7.891	0	0	0	14	0	PIK3R6	intronic	NA
MB_Group4_T4--2	17:8736145	C	NA	21	0	21	29.810	12.556	0	0	0	15	0	PIK3R6	intronic	NA
MB_Group4_T4--3	17:8736145	C	A	21	0.143	18	24.056	16.533	3	37.333	5.508	10	3	PIK3R6	intronic	NA
MB_Group4_T4--4	17:8736145	C	A	26	0.077	24	30.625	11.791	2	21.500	19.092	18	1	PIK3R6	intronic	NA
MB_Group4_T4--5	17:8736145	C	A	13	0.538	6	28.000	13.297	7	29.714	11.280	4	4	PIK3R6	intronic	NA
MB_Group4_T4--GL	17:8736145	C	NA	46	0	46	28.152	13.586	0	0	0	26	0	PIK3R6	intronic	NA
MB_Group4_T4--1	18:10671759	G	A	71	0.225	55	38.055	5.448	16	37.625	4.031	52	15	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--2	18:10671759	G	A	104	0.183	85	38.529	3.800	19	39.000	3.091	82	18	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--3	18:10671759	G	A	173	0.156	146	37.973	4.639	27	37.815	3.317	140	26	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--4	18:10671759	G	A	111	0.135	96	38.833	3.629	15	36.333	5.936	93	12	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--5	18:10671759	G	NA	72	0	72	37.319	7.711	0	0	0	67	0	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	18:10671759	G	NA	80	0	79	38.165	5.022	0	0	0	77	0	PIEZO2	exonic	nonsynonymous_SNV
MB_Group4_T4--1	18:43422409	A	T	24	0.125	21	35.286	7.302	3	27.333	15.044	19	2	SIGLEC15	UTR3	NA
MB_Group4_T4--2	18:43422409	A	NA	31	0	27	35.889	3.806	0	0	0	24	0	SIGLEC15	UTR3	NA
MB_Group4_T4--3	18:43422409	A	T	41	0.146	34	34.588	8.139	6	34.833	6.555	31	5	SIGLEC15	UTR3	NA
MB_Group4_T4--4	18:43422409	A	T	47	0.064	42	36.071	4.364	3	34.667	2.082	38	3	SIGLEC15	UTR3	NA
MB_Group4_T4--5	18:43422409	A	NA	15	0	14	37.000	3.981	0	0	0	13	0	SIGLEC15	UTR3	NA
MB_Group4_T4--GL	18:43422409	A	NA	41	0	39	33.641	7.162	0	0	0	34	0	SIGLEC15	UTR3	NA
MB_Group4_T4--1	1:86904758	G	NA	81	0	81	37.840	5.660	0	0	0	77	0	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--2	1:86904758	G	NA	162	0	162	38.420	4.182	0	0	0	159	0	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--3	1:86904758	G	NA	154	0	154	37.831	5.548	0	0	0	144	0	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--4	1:86904758	G	C	158	0.019	154	37.955	4.070	3	40.333	0.577	145	3	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--5	1:86904758	G	C	81	0.173	67	38.343	4.801	14	39.714	2.016	63	14	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	1:86904758	G	NA	122	0	121	38.331	3.923	0	0	0	118	0	CLCA2	exonic	nonsynonymous_SNV
MB_Group4_T4--1	19:44223726	C	NA	45	0	45	35.222	7.274	0	0	0	41	0	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--2	19:44223726	C	NA	63	0	63	35.698	5.494	0	0	0	57	0	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--3	19:44223726	C	NA	63	0	63	33.873	9.488	0	0	0	53	0	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--4	19:44223726	C	T	89	0.022	87	34.103	7.877	2	40.000	0.000	78	2	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--5	19:44223726	C	T	35	0.257	26	32.000	10.415	9	37.222	2.682	20	9	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	19:44223726	C	NA	97	0	97	34.485	6.738	0	0	0	86	0	IRGC	exonic	nonsynonymous_SNV
MB_Group4_T4--1	19:51021420	G	A	29	0.207	23	33.609	8.072	6	35.500	3.017	21	6	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--2	19:51021420	G	A	46	0.261	34	34.382	8.924	12	36.417	2.811	32	12	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--3	19:51021420	G	A	46	0.152	39	33.513	9.643	7	29.571	10.830	34	5	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--4	19:51021420	G	A	67	0.194	53	31.170	11.346	13	35.385	5.980	43	12	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--5	19:51021420	G	NA	25	0	25	36.000	6.185	0	0	0	23	0	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	19:51021420	G	NA	84	0	84	32.238	9.329	0	0	0	68	0	LRRC4B	exonic	nonsynonymous_SNV
MB_Group4_T4--1	19:52909396	G	A	40	0.150	34	35.735	7.279	6	37.667	4.179	32	6	ZNF528	intronic	NA
MB_Group4_T4--2	19:52909396	G	A	54	0.148	46	37.152	6.912	8	37.750	2.605	42	8	ZNF528	intronic	NA
MB_Group4_T4--3	19:52909396	G	A	70	0.257	52	37.788	3.722	18	39.111	2.518	49	18	ZNF528	intronic	NA
MB_Group4_T4--4	19:52909396	G	A	81	0.160	68	36.956	7.141	13	37.538	5.142	62	12	ZNF528	intronic	NA
MB_Group4_T4--5	19:52909396	G	NA	41	0	41	38.000	3.202	0	0	0	41	0	ZNF528	intronic	NA
MB_Group4_T4--GL	19:52909396	G	NA	59	0	59	38.085	4.553	0	0	0	56	0	ZNF528	intronic	NA
MB_Group4_T4--1	19:55176541	G	NA	17	0	17	34.235	9.769	0	0	0	15	0	LILRB4	intronic	NA
MB_Group4_T4--2	19:55176541	G	NA	19	0	19	36.105	5.174	0	0	0	18	0	LILRB4	intronic	NA
MB_Group4_T4--3	19:55176541	G	NA	36	0	36	36.778	3.339	0	0	0	35	0	LILRB4	intronic	NA
MB_Group4_T4--4	19:55176541	G	NA	37	0	37	35.405	5.304	0	0	0	33	0	LILRB4	intronic	NA
MB_Group4_T4--5	19:55176541	G	T	22	0.409	13	37.308	4.889	9	34.444	4.531	12	7	LILRB4	intronic	NA
MB_Group4_T4--GL	19:55176541	G	NA	36	0	36	35.083	7.205	0	0	0	32	0	LILRB4	intronic	NA
MB_Group4_T4--1	19:7764379	C	T	17	0.235	13	35.692	4.479	4	31.500	3.317	11	3	FCER2	intronic	NA
MB_Group4_T4--2	19:7764379	C	NA	27	0	27	33.815	9.282	0	0	0	23	0	FCER2	intronic	NA
MB_Group4_T4--3	19:7764379	C	T	33	0.061	30	35.700	4.977	2	34.500	0.707	27	2	FCER2	intronic	NA
MB_Group4_T4--4	19:7764379	C	T	36	0.056	34	33.882	7.792	2	32.500	2.121	29	2	FCER2	intronic	NA
MB_Group4_T4--5	19:7764379	C	NA	13	0	12	36.083	4.100	0	0	0	11	0	FCER2	intronic	NA
MB_Group4_T4--GL	19:7764379	C	NA	39	0	39	34.128	8.646	0	0	0	33	0	FCER2	intronic	NA
MB_Group4_T4--1	20:61472852	C	NA	27	0	27	37.630	4.271	0	0	0	25	0	TCFL5	UTR3	NA
MB_Group4_T4--2	20:61472852	C	NA	58	0	58	38.103	4.723	0	0	0	55	0	TCFL5	UTR3	NA
MB_Group4_T4--3	20:61472852	C	A	56	0.018	55	38.091	4.398	1	38.000	0.000	52	1	TCFL5	UTR3	NA
MB_Group4_T4--4	20:61472852	C	NA	54	0	54	38.944	2.414	0	0	0	54	0	TCFL5	UTR3	NA
MB_Group4_T4--5	20:61472852	C	A	18	0.167	15	36.933	4.574	3	40.667	0.577	14	3	TCFL5	UTR3	NA
MB_Group4_T4--GL	20:61472852	C	NA	56	0	56	38.964	2.508	0	0	0	56	0	TCFL5	UTR3	NA
MB_Group4_T4--1	21:10793890	T	C	43	0.140	37	37.595	6.048	6	39.833	2.041	34	6	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--2	21:10793890	T	C	68	0.147	58	36.983	5.862	10	38.100	4.254	53	10	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--3	21:10793890	T	C	79	0.139	68	36.118	8.446	11	39.727	1.009	58	11	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--4	21:10793890	T	C	109	0.092	99	38.434	4.578	10	39.700	2.312	95	10	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--5	21:10793890	T	NA	28	0	28	34.786	7.325	0	0	0	24	0	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--GL	21:10793890	T	NA	95	0	95	36.874	7.652	0	0	0	88	0	TEKT4P2(dist=825297),TPTE(dist=112853)	intergenic	NA
MB_Group4_T4--1	21:15746522	C	T	31	0.226	24	38.417	2.918	7	35.857	7.841	24	6	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--2	21:15746522	C	T	48	0.292	34	38.588	2.687	14	38.714	1.729	34	14	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--3	21:15746522	C	T	72	0.306	50	36.560	8.391	22	38.864	3.270	45	22	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--4	21:15746522	C	T	57	0.368	36	36.861	6.410	21	38.000	4.940	34	19	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--5	21:15746522	C	T	43	0.186	35	38.829	3.249	8	37.750	3.412	34	8	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	21:15746522	C	NA	71	0	71	38.493	5.406	0	0	0	68	0	HSPA13	exonic	nonsynonymous_SNV
MB_Group4_T4--1	2:131672848	C	NA	56	0	56	37.786	3.212	0	0	0	56	0	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--2	2:131672848	C	NA	84	0	84	37.155	5.658	0	0	0	80	0	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--3	2:131672848	C	T	76	0.053	72	36.347	7.324	4	38.000	2.582	64	4	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--4	2:131672848	C	T	98	0.051	93	36.903	5.570	5	37.800	2.588	86	5	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--5	2:131672848	C	T	53	0.189	43	38.163	3.505	10	35.200	4.686	42	9	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--GL	2:131672848	C	NA	116	0	116	36.802	6.355	0	0	0	109	0	AMER3(dist=147141),ARHGEF4(dist=1376)	intergenic	NA
MB_Group4_T4--1	21:37661539	T	NA	21	0	20	37.000	3.699	0	0	0	19	0	DOPEY2	intronic	NA
MB_Group4_T4--2	21:37661539	T	NA	40	0	40	37.650	4.487	0	0	0	38	0	DOPEY2	intronic	NA
MB_Group4_T4--3	21:37661539	T	NA	47	0	47	37.638	4.411	0	0	0	45	0	DOPEY2	intronic	NA
MB_Group4_T4--4	21:37661539	T	G	45	0.067	42	38.310	4.069	3	24.667	20.257	41	2	DOPEY2	intronic	NA
MB_Group4_T4--5	21:37661539	T	G	34	0.353	22	38.591	4.426	12	35.667	8.856	21	11	DOPEY2	intronic	NA
MB_Group4_T4--GL	21:37661539	T	NA	79	0	79	37.722	5.344	0	0	0	74	0	DOPEY2	intronic	NA
MB_Group4_T4--1	21:38596440	G	C	20	0.350	13	33.538	11.645	7	38.143	2.968	11	7	DSCR3	UTR3	NA
MB_Group4_T4--2	21:38596440	G	C	40	0.250	30	37.933	3.129	10	33.400	11.568	30	9	DSCR3	UTR3	NA
MB_Group4_T4--3	21:38596440	G	C	40	0.400	24	34.667	8.545	16	37.062	2.670	20	16	DSCR3	UTR3	NA
MB_Group4_T4--4	21:38596440	G	C	57	0.333	38	36.263	5.731	19	34.000	9.978	36	16	DSCR3	UTR3	NA
MB_Group4_T4--5	21:38596440	G	C	19	0.263	14	37.143	3.920	5	37.800	3.834	13	5	DSCR3	UTR3	NA
MB_Group4_T4--GL	21:38596440	G	NA	59	0	59	35.475	7.718	0	0	0	50	0	DSCR3	UTR3	NA
MB_Group4_T4--1	21:38596441	C	T	21	0.381	13	32.077	12.990	8	36.625	3.583	11	8	DSCR3	UTR3	NA
MB_Group4_T4--2	21:38596441	C	T	39	0.231	30	37.133	3.758	9	32.000	12.359	29	7	DSCR3	UTR3	NA
MB_Group4_T4--3	21:38596441	C	T	40	0.425	23	35.478	8.218	17	32.412	8.269	21	14	DSCR3	UTR3	NA
MB_Group4_T4--4	21:38596441	C	T	55	0.345	36	36.194	7.600	19	32.579	10.511	33	16	DSCR3	UTR3	NA
MB_Group4_T4--5	21:38596441	C	T	18	0.222	14	33.500	9.079	4	38.000	0.816	11	4	DSCR3	UTR3	NA
MB_Group4_T4--GL	21:38596441	C	NA	59	0	59	34.983	7.767	0	0	0	50	0	DSCR3	UTR3	NA
MB_Group4_T4--1	2:1481033	G	A	33	0.303	23	34.478	9.244	10	35.000	10.111	20	9	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--2	2:1481033	G	A	49	0.327	32	33.031	9.753	16	31.500	11.753	25	14	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--3	2:1481033	G	A	59	0.254	44	33.182	8.705	15	31.267	9.647	37	11	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--4	2:1481033	G	A	57	0.211	45	34.022	7.156	12	30.833	10.116	39	8	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--5	2:1481033	G	NA	14	0	14	35.571	4.863	0	0	0	12	0	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	2:1481033	G	NA	78	0	77	34.013	7.740	0	0	0	67	0	TPO	exonic	nonsynonymous_SNV
MB_Group4_T4--1	2:150330387	A	C	44	0.273	32	37.906	4.928	12	39.333	2.270	31	12	LYPD6	UTR3	NA
MB_Group4_T4--2	2:150330387	A	C	69	0.232	53	37.736	3.193	16	38.562	2.988	52	16	LYPD6	UTR3	NA
MB_Group4_T4--3	2:150330387	A	C	70	0.329	47	37.468	3.538	23	38.043	5.372	46	22	LYPD6	UTR3	NA
MB_Group4_T4--4	2:150330387	A	C	64	0.141	55	35.636	7.405	9	31.000	10.320	50	5	LYPD6	UTR3	NA
MB_Group4_T4--5	2:150330387	A	NA	32	0	32	35.812	6.255	0	0	0	29	0	LYPD6	UTR3	NA
MB_Group4_T4--GL	2:150330387	A	NA	71	0	71	37.197	5.502	0	0	0	66	0	LYPD6	UTR3	NA
MB_Group4_T4--1	2:1636414	T	NA	46	0	46	36.804	5.361	0	0	0	42	0	PXDN	UTR3	NA
MB_Group4_T4--2	2:1636414	T	NA	56	0	56	36.196	4.765	0	0	0	52	0	PXDN	UTR3	NA
MB_Group4_T4--3	2:1636414	T	NA	68	0	68	35.132	8.877	0	0	0	61	0	PXDN	UTR3	NA
MB_Group4_T4--4	2:1636414	T	C	78	0.026	76	35.724	6.770	2	38.500	3.536	68	2	PXDN	UTR3	NA
MB_Group4_T4--5	2:1636414	T	C	34	0.265	25	32.960	8.806	9	35.556	4.065	21	8	PXDN	UTR3	NA
MB_Group4_T4--GL	2:1636414	T	NA	84	0	84	36.548	6.092	0	0	0	79	0	PXDN	UTR3	NA
MB_Group4_T4--1	2:178879184	G	A	38	0.342	25	36.960	4.877	13	39.846	1.281	22	13	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--2	2:178879184	G	A	73	0.315	50	37.340	6.505	23	36.957	8.568	47	21	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--3	2:178879184	G	A	99	0.313	68	37.794	5.316	31	39.258	2.422	63	31	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--4	2:178879184	G	A	98	0.469	52	36.019	8.662	46	39.239	2.302	47	46	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--5	2:178879184	G	NA	33	0	33	37.606	4.205	0	0	0	31	0	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--GL	2:178879184	G	NA	114	0	114	37.675	6.413	0	0	0	108	0	PDE11A	exonic	stopgain_SNV
MB_Group4_T4--1	22:17983832	G	NA	18	0	18	38.389	4.286	0	0	0	17	0	CECR2	intronic	NA
MB_Group4_T4--2	22:17983832	G	NA	31	0	31	36.065	5.573	0	0	0	29	0	CECR2	intronic	NA
MB_Group4_T4--3	22:17983832	G	NA	39	0	39	37.487	3.094	0	0	0	39	0	CECR2	intronic	NA
MB_Group4_T4--4	22:17983832	G	NA	44	0	44	36.932	6.285	0	0	0	42	0	CECR2	intronic	NA
MB_Group4_T4--5	22:17983832	G	T	24	0.458	13	38.385	3.330	11	34.818	6.969	13	10	CECR2	intronic	NA
MB_Group4_T4--GL	22:17983832	G	NA	64	0	64	35.766	7.222	0	0	0	59	0	CECR2	intronic	NA
MB_Group4_T4--1	2:231280680	C	NA	62	0	62	35.597	7.528	0	0	0	58	0	SP100	upstream	NA
MB_Group4_T4--2	2:231280680	C	NA	63	0	63	36.778	6.105	0	0	0	58	0	SP100	upstream	NA
MB_Group4_T4--3	2:231280680	C	A	95	0.021	93	34.624	8.573	2	40.000	1.414	82	2	SP100	upstream	NA
MB_Group4_T4--4	2:231280680	C	NA	123	0	123	33.390	8.920	0	0	0	102	0	SP100	upstream	NA
MB_Group4_T4--5	2:231280680	C	A	36	0.167	30	34.867	4.732	6	37.500	3.082	28	6	SP100	upstream	NA
MB_Group4_T4--GL	2:231280680	C	NA	93	0	93	34.914	7.373	0	0	0	84	0	SP100	upstream	NA
MB_Group4_T4--1	22:32081453	C	A	47	0.319	26	25.500	12.876	15	29.600	8.724	16	9	PRR14L	UTR3	NA
MB_Group4_T4--2	22:32081453	C	A	74	0.216	50	31.000	7.775	16	28.250	9.511	36	10	PRR14L	UTR3	NA
MB_Group4_T4--3	22:32081453	C	A	100	0.250	71	28.507	10.922	25	27.040	12.415	47	16	PRR14L	UTR3	NA
MB_Group4_T4--4	22:32081453	C	A	63	0.175	52	30.327	7.524	11	25.545	12.291	33	6	PRR14L	UTR3	NA
MB_Group4_T4--5	22:32081453	C	NA	70	0	69	30.406	6.302	0	0	0	42	0	PRR14L	UTR3	NA
MB_Group4_T4--GL	22:32081453	C	NA	140	0	137	30.263	8.387	0	0	0	89	0	PRR14L	UTR3	NA
MB_Group4_T4--1	22:42908897	T	C	15	0.333	10	30.200	11.023	5	35.600	4.669	7	4	RRP7A	UTR3	NA
MB_Group4_T4--2	22:42908897	T	C	25	0.160	21	35.095	8.300	4	34.500	2.082	20	4	RRP7A	UTR3	NA
MB_Group4_T4--3	22:42908897	T	NA	23	0	23	36.609	5.298	0	0	0	20	0	RRP7A	UTR3	NA
MB_Group4_T4--4	22:42908897	T	C	46	0.130	40	35.225	6.322	6	37.333	6.218	37	5	RRP7A	UTR3	NA
MB_Group4_T4--5	22:42908897	T	C	21	0.095	19	36.211	6.134	2	39.000	2.828	17	2	RRP7A	UTR3	NA
MB_Group4_T4--GL	22:42908897	T	NA	54	0	54	34.907	7.681	0	0	0	48	0	RRP7A	UTR3	NA
MB_Group4_T4--1	22:46640466	A	NA	17	0	17	36.529	9.335	0	0	0	16	0	CDPF1	UTR3	NA
MB_Group4_T4--2	22:46640466	A	NA	28	0	28	35.607	7.690	0	0	0	26	0	CDPF1	UTR3	NA
MB_Group4_T4--3	22:46640466	A	NA	31	0	31	38.452	3.150	0	0	0	30	0	CDPF1	UTR3	NA
MB_Group4_T4--4	22:46640466	A	NA	20	0	20	37.450	3.316	0	0	0	20	0	CDPF1	UTR3	NA
MB_Group4_T4--5	22:46640466	A	G	14	0.286	10	39.000	4.497	4	40.000	2.000	9	4	CDPF1	UTR3	NA
MB_Group4_T4--GL	22:46640466	A	NA	50	0	50	36.800	6.174	0	0	0	45	0	CDPF1	UTR3	NA
MB_Group4_T4--1	3:129302314	G	A	26	0.269	19	37.579	3.878	7	34.286	4.348	18	6	PLXND1	intronic	NA
MB_Group4_T4--2	3:129302314	G	A	34	0.294	24	37.417	6.079	10	38.300	3.093	22	10	PLXND1	intronic	NA
MB_Group4_T4--3	3:129302314	G	A	46	0.217	36	37.722	6.687	10	37.700	2.452	35	10	PLXND1	intronic	NA
MB_Group4_T4--4	3:129302314	G	A	51	0.333	34	35.912	7.120	17	36.235	4.777	31	14	PLXND1	intronic	NA
MB_Group4_T4--5	3:129302314	G	NA	25	0	25	38.040	4.550	0	0	0	23	0	PLXND1	intronic	NA
MB_Group4_T4--GL	3:129302314	G	NA	46	0	46	35.870	7.491	0	0	0	40	0	PLXND1	intronic	NA
MB_Group4_T4--1	3:179519150	G	A	47	0.319	32	37.500	5.328	15	39.000	2.777	30	15	PEX5L	UTR3	NA
MB_Group4_T4--2	3:179519150	G	A	76	0.316	52	38.000	6.126	24	37.667	3.886	49	24	PEX5L	UTR3	NA
MB_Group4_T4--3	3:179519150	G	A	84	0.250	63	37.984	4.506	21	36.619	5.362	62	20	PEX5L	UTR3	NA
MB_Group4_T4--4	3:179519150	G	A	53	0.208	42	37.167	6.825	11	38.455	3.174	38	11	PEX5L	UTR3	NA
MB_Group4_T4--5	3:179519150	G	A	34	0.029	33	36.758	9.243	1	39.000	0.000	31	1	PEX5L	UTR3	NA
MB_Group4_T4--GL	3:179519150	G	NA	54	0	54	38.093	4.557	0	0	0	49	0	PEX5L	UTR3	NA
MB_Group4_T4--1	3:40498739	G	NA	23	0	23	34.043	7.969	0	0	0	20	0	RPL14	upstream	NA
MB_Group4_T4--2	3:40498739	G	C	32	0.125	28	35.500	3.883	4	34.500	1.000	27	4	RPL14	upstream	NA
MB_Group4_T4--3	3:40498739	G	NA	34	0	34	32.441	8.121	0	0	0	27	0	RPL14	upstream	NA
MB_Group4_T4--4	3:40498739	G	C	26	0.077	24	33.500	8.490	2	35.000	0.000	20	2	RPL14	upstream	NA
MB_Group4_T4--5	3:40498739	G	C	17	0.235	13	32.308	9.690	4	34.000	1.155	11	4	RPL14	upstream	NA
MB_Group4_T4--GL	3:40498739	G	NA	42	0	41	33.902	6.782	0	0	0	38	0	RPL14	upstream	NA
MB_Group4_T4--1	3:48624203	G	C	22	0.273	16	38.062	3.890	6	32.667	15.293	16	5	COL7A1	intronic	NA
MB_Group4_T4--2	3:48624203	G	C	27	0.333	18	37.111	4.523	9	29.778	12.518	16	6	COL7A1	intronic	NA
MB_Group4_T4--3	3:48624203	G	C	34	0.118	30	37.700	3.583	4	37.750	3.403	29	4	COL7A1	intronic	NA
MB_Group4_T4--4	3:48624203	G	C	36	0.194	29	37.000	5.000	7	33.429	8.829	26	6	COL7A1	intronic	NA
MB_Group4_T4--5	3:48624203	G	NA	18	0	18	37.722	4.701	0	0	0	16	0	COL7A1	intronic	NA
MB_Group4_T4--GL	3:48624203	G	NA	40	0	40	37.500	5.149	0	0	0	36	0	COL7A1	intronic	NA
MB_Group4_T4--1	3:9022658	T	C	51	0.275	36	35.111	4.597	14	33.929	6.294	33	12	SRGAP3	UTR3	NA
MB_Group4_T4--2	3:9022658	T	C	89	0.303	62	33.742	7.272	27	35.259	7.445	53	26	SRGAP3	UTR3	NA
MB_Group4_T4--3	3:9022658	T	C	97	0.216	75	34.040	7.165	21	35.190	5.955	65	20	SRGAP3	UTR3	NA
MB_Group4_T4--4	3:9022658	T	C	107	0.187	85	35.012	5.308	20	36.050	4.617	76	19	SRGAP3	UTR3	NA
MB_Group4_T4--5	3:9022658	T	NA	51	0	51	34.686	7.246	0	0	0	46	0	SRGAP3	UTR3	NA
MB_Group4_T4--GL	3:9022658	T	NA	81	0	81	34.951	6.790	0	0	0	71	0	SRGAP3	UTR3	NA
MB_Group4_T4--1	4:110754420	G	NA	67	0	67	38.134	3.247	0	0	0	66	0	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--2	4:110754420	G	NA	102	0	102	37.235	7.246	0	0	0	97	0	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--3	4:110754420	G	C	135	0.015	133	37.165	6.352	2	38.000	1.414	124	2	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--4	4:110754420	G	NA	115	0	115	37.513	6.080	0	0	0	111	0	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--5	4:110754420	G	C	69	0.188	56	37.893	4.330	13	35.385	5.952	54	11	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	4:110754420	G	NA	120	0	120	38.067	4.113	0	0	0	114	0	RRH	exonic	nonsynonymous_SNV
MB_Group4_T4--1	5:140221225	G	NA	45	0	45	36.222	3.554	0	0	0	43	0	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--2	5:140221225	G	NA	53	0	53	34.623	8.039	0	0	0	47	0	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--3	5:140221225	G	NA	64	0	64	34.906	6.039	0	0	0	60	0	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--4	5:140221225	G	NA	65	0	65	33.262	9.274	0	0	0	56	0	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--5	5:140221225	G	T	37	0.270	27	36.926	3.222	10	31.900	10.806	27	9	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--GL	5:140221225	G	NA	45	0	45	34.000	9.202	0	0	0	41	0	PCDHA8	exonic	stopgain_SNV
MB_Group4_T4--1	5:170726757	C	NA	22	0	22	37.955	4.100	0	0	0	21	0	RANBP17	UTR3	NA
MB_Group4_T4--2	5:170726757	C	NA	41	0	41	38.659	3.079	0	0	0	41	0	RANBP17	UTR3	NA
MB_Group4_T4--3	5:170726757	C	NA	46	0	46	36.739	8.098	0	0	0	44	0	RANBP17	UTR3	NA
MB_Group4_T4--4	5:170726757	C	T	39	0.026	38	39.316	2.170	1	37.000	0.000	38	1	RANBP17	UTR3	NA
MB_Group4_T4--5	5:170726757	C	T	18	0.167	15	38.800	4.475	3	38.667	1.528	13	3	RANBP17	UTR3	NA
MB_Group4_T4--GL	5:170726757	C	NA	46	0	46	38.326	2.929	0	0	0	45	0	RANBP17	UTR3	NA
MB_Group4_T4--1	5:71489089	C	T	46	0.174	38	35.316	7.946	8	35.375	2.387	33	8	MAP1B	intronic	NA
MB_Group4_T4--2	5:71489089	C	T	61	0.131	53	36.321	4.945	8	36.000	1.069	48	8	MAP1B	intronic	NA
MB_Group4_T4--3	5:71489089	C	T	84	0.119	74	35.662	6.521	10	29.800	8.967	67	8	MAP1B	intronic	NA
MB_Group4_T4--4	5:71489089	C	T	61	0.082	56	37.607	3.468	5	33.400	3.782	53	4	MAP1B	intronic	NA
MB_Group4_T4--5	5:71489089	C	T	39	0.179	32	36.906	3.115	7	35.286	1.704	32	7	MAP1B	intronic	NA
MB_Group4_T4--GL	5:71489089	C	NA	34	0	34	36.824	4.267	0	0	0	33	0	MAP1B	intronic	NA
MB_Group4_T4--1	5:71489090	T	C	46	0.174	38	38.895	2.240	8	34.250	3.151	38	7	MAP1B	intronic	NA
MB_Group4_T4--2	5:71489090	T	C	62	0.113	55	38.436	3.173	7	34.286	2.498	54	7	MAP1B	intronic	NA
MB_Group4_T4--3	5:71489090	T	C	79	0.063	74	37.838	4.655	5	27.800	14.429	70	4	MAP1B	intronic	NA
MB_Group4_T4--4	5:71489090	T	C	61	0.066	57	37.368	6.469	4	33.000	3.162	54	4	MAP1B	intronic	NA
MB_Group4_T4--5	5:71489090	T	C	37	0.108	33	38.212	2.547	4	36.500	1.000	33	4	MAP1B	intronic	NA
MB_Group4_T4--GL	5:71489090	T	NA	36	0	36	38.556	2.311	0	0	0	36	0	MAP1B	intronic	NA
MB_Group4_T4--1	5:76989292	T	C	32	0.219	25	38.280	4.686	7	39.857	1.773	23	7	TBCA	intronic	NA
MB_Group4_T4--2	5:76989292	T	C	60	0.150	51	38.098	3.657	9	40.222	1.394	49	9	TBCA	intronic	NA
MB_Group4_T4--3	5:76989292	T	C	75	0.120	66	37.758	3.746	9	39.889	1.900	64	9	TBCA	intronic	NA
MB_Group4_T4--4	5:76989292	T	C	69	0.188	56	37.625	6.125	13	37.231	8.748	53	12	TBCA	intronic	NA
MB_Group4_T4--5	5:76989292	T	NA	36	0	36	37.028	5.784	0	0	0	33	0	TBCA	intronic	NA
MB_Group4_T4--GL	5:76989292	T	NA	66	0	66	38.652	3.656	0	0	0	63	0	TBCA	intronic	NA
MB_Group4_T4--1	6:133073576	A	G	32	0.156	27	36.852	7.538	5	38.000	3.742	26	5	VNN2	intronic	NA
MB_Group4_T4--2	6:133073576	A	G	48	0.062	45	38.289	5.983	3	38.000	2.646	43	3	VNN2	intronic	NA
MB_Group4_T4--3	6:133073576	A	G	81	0.086	74	37.905	4.162	7	39.286	2.498	70	7	VNN2	intronic	NA
MB_Group4_T4--4	6:133073576	A	NA	51	0	51	38.392	3.493	0	0	0	49	0	VNN2	intronic	NA
MB_Group4_T4--5	6:133073576	A	NA	30	0	30	38.200	3.978	0	0	0	29	0	VNN2	intronic	NA
MB_Group4_T4--GL	6:133073576	A	NA	54	0	54	38.333	4.198	0	0	0	50	0	VNN2	intronic	NA
MB_Group4_T4--1	6:135283944	A	NA	49	0	49	37.816	4.961	0	0	0	48	0	HBS1L	UTR3	NA
MB_Group4_T4--2	6:135283944	A	NA	91	0	91	37.725	5.069	0	0	0	88	0	HBS1L	UTR3	NA
MB_Group4_T4--3	6:135283944	A	NA	114	0	114	37.632	5.746	0	0	0	110	0	HBS1L	UTR3	NA
MB_Group4_T4--4	6:135283944	A	NA	85	0	85	38.624	2.225	0	0	0	85	0	HBS1L	UTR3	NA
MB_Group4_T4--5	6:135283944	A	G	42	0.167	35	37.314	3.462	7	36.857	3.976	34	7	HBS1L	UTR3	NA
MB_Group4_T4--GL	6:135283944	A	NA	68	0	68	37.618	3.825	0	0	0	67	0	HBS1L	UTR3	NA
MB_Group4_T4--1	6:150052898	T	NA	36	0	36	36.528	6.139	0	0	0	34	0	NUP43	intronic	NA
MB_Group4_T4--2	6:150052898	T	NA	88	0	88	36.420	4.984	0	0	0	80	0	NUP43	intronic	NA
MB_Group4_T4--3	6:150052898	T	NA	84	0	84	38.048	3.379	0	0	0	82	0	NUP43	intronic	NA
MB_Group4_T4--4	6:150052898	T	C	89	0.045	85	36.541	7.427	4	36.750	3.862	77	4	NUP43	intronic	NA
MB_Group4_T4--5	6:150052898	T	C	54	0.259	40	37.075	3.872	14	36.929	3.852	38	13	NUP43	intronic	NA
MB_Group4_T4--GL	6:150052898	T	NA	87	0	87	36.862	5.495	0	0	0	81	0	NUP43	intronic	NA
MB_Group4_T4--1	6:161556043	A	T	34	0.176	28	38.464	2.963	6	33.833	1.602	28	6	AGPAT4	UTR3	NA
MB_Group4_T4--2	6:161556043	A	T	65	0.062	60	37.900	5.587	4	32.500	4.435	58	3	AGPAT4	UTR3	NA
MB_Group4_T4--3	6:161556043	A	T	69	0.058	65	38.523	4.195	4	36.750	2.217	63	4	AGPAT4	UTR3	NA
MB_Group4_T4--4	6:161556043	A	T	77	0.065	72	38.028	5.485	5	36.800	3.834	69	5	AGPAT4	UTR3	NA
MB_Group4_T4--5	6:161556043	A	T	49	0.020	48	36.021	8.211	1	34.000	0.000	43	1	AGPAT4	UTR3	NA
MB_Group4_T4--GL	6:161556043	A	NA	50	0	49	37.612	5.411	0	0	0	44	0	AGPAT4	UTR3	NA
MB_Group4_T4--1	6:30675222	T	C	39	0.231	30	38.867	3.598	9	34.444	12.330	29	8	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--2	6:30675222	T	C	60	0.033	58	37.052	4.714	2	39.000	2.828	54	2	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--3	6:30675222	T	NA	69	0	68	36.779	6.595	0	0	0	62	0	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--4	6:30675222	T	NA	63	0	63	37.635	4.293	0	0	0	59	0	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--5	6:30675222	T	NA	28	0	28	36.536	5.634	0	0	0	23	0	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--GL	6:30675222	T	NA	59	0	59	36.780	6.409	0	0	0	56	0	MDC1	exonic	nonsynonymous_SNV
MB_Group4_T4--1	6:35950114	G	NA	26	0	26	37.808	4.195	0	0	0	24	0	SLC26A8	intronic	NA
MB_Group4_T4--2	6:35950114	G	NA	40	0	40	38.375	2.780	0	0	0	40	0	SLC26A8	intronic	NA
MB_Group4_T4--3	6:35950114	G	NA	41	0	41	38.293	6.455	0	0	0	39	0	SLC26A8	intronic	NA
MB_Group4_T4--4	6:35950114	G	NA	28	0	28	39.179	2.480	0	0	0	28	0	SLC26A8	intronic	NA
MB_Group4_T4--5	6:35950114	G	T	20	0.200	16	37.500	3.406	4	36.750	3.862	16	4	SLC26A8	intronic	NA
MB_Group4_T4--GL	6:35950114	G	NA	40	0	40	38.400	3.272	0	0	0	39	0	SLC26A8	intronic	NA
MB_Group4_T4--1	6:56296519	G	A	66	0.182	54	37.370	5.482	12	35.250	11.137	52	11	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--2	6:56296519	G	A	112	0.259	83	38.892	2.807	29	37.759	5.944	82	28	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--3	6:56296519	G	A	119	0.168	99	36.626	7.424	20	36.800	3.548	93	20	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--4	6:56296519	G	A	82	0.134	71	37.901	5.060	11	38.273	3.101	70	11	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--5	6:56296519	G	NA	60	0	60	37.767	5.261	0	0	0	58	0	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--GL	6:56296519	G	NA	65	0	65	37.431	4.809	0	0	0	61	0	RNU6-71P	ncRNA_intronic	NA
MB_Group4_T4--1	6:92231379	T	NA	58	0	58	38.293	3.372	0	0	0	57	0	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--2	6:92231379	T	NA	91	0	91	38.396	3.565	0	0	0	89	0	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--3	6:92231379	T	G	131	0.015	129	37.915	5.257	2	40.500	0.707	124	2	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--4	6:92231379	T	NA	105	0	105	38.124	2.901	0	0	0	104	0	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--5	6:92231379	T	G	31	0.226	24	38.292	3.940	7	39.143	2.545	23	7	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--GL	6:92231379	T	NA	55	0	55	37.727	4.249	0	0	0	50	0	MIR4643	ncRNA_exonic	NA
MB_Group4_T4--1	8:14095021	A	G	36	0.111	32	38.188	3.247	4	28.250	17.500	32	3	SGCZ	intronic	NA
MB_Group4_T4--2	8:14095021	A	G	71	0.070	66	37.455	6.049	5	24.600	16.471	63	3	SGCZ	intronic	NA
MB_Group4_T4--3	8:14095021	A	G	87	0.080	80	37.375	5.897	7	32.286	8.056	76	5	SGCZ	intronic	NA
MB_Group4_T4--4	8:14095021	A	G	45	0.022	44	37.795	4.129	1	37.000	0.000	42	1	SGCZ	intronic	NA
MB_Group4_T4--5	8:14095021	A	G	30	0.233	23	37.478	4.263	7	36.000	4.509	21	6	SGCZ	intronic	NA
MB_Group4_T4--GL	8:14095021	A	NA	100	0	100	37.600	4.621	0	0	0	94	0	SGCZ	intronic	NA
MB_Group4_T4--1	9:74667227	A	G	15	0.400	9	37.667	1.871	6	37.833	2.639	9	6	C9orf57	exonic	synonymous_SNV
MB_Group4_T4--2	9:74667227	A	G	49	0.184	40	38.375	6.487	9	38.667	2.598	39	9	C9orf57	exonic	synonymous_SNV
MB_Group4_T4--3	9:74667227	A	G	50	0.100	45	38.222	6.018	5	35.200	5.805	44	4	C9orf57	exonic	synonymous_SNV
MB_Group4_T4--4	9:74667227	A	G	42	0.119	37	38.676	2.759	5	38.000	5.612	37	4	C9orf57	exonic	synonymous_SNV
MB_Group4_T4--5	9:74667227	A	NA	21	0	21	38.524	3.172	0	0	0	21	0	C9orf57	exonic	synonymous_SNV
MB_Group4_T4--GL	9:74667227	A	NA	49	0	49	38.429	2.965	0	0	0	49	0	C9orf57	exonic	synonymous_SNV
MB_SHH_T1--1	10:11805838	C	T	57	0.175	47	36.553	4.206	10	35.100	2.283	43	10	ECHDC3	UTR3	NA
MB_SHH_T1--2	10:11805838	C	NA	32	0	31	35.581	7.379	0	0	0	28	0	ECHDC3	UTR3	NA
MB_SHH_T1--3	10:11805838	C	T	58	0.138	50	36.520	5.888	8	35.000	3.117	47	8	ECHDC3	UTR3	NA
MB_SHH_T1--4	10:11805838	C	T	57	0.053	54	37.037	4.056	3	35.667	0.577	53	3	ECHDC3	UTR3	NA
MB_SHH_T1--5	10:11805838	C	T	49	0.163	41	36.512	6.329	8	34.875	2.949	40	8	ECHDC3	UTR3	NA
MB_SHH_T1--6	10:11805838	C	T	53	0.094	48	36.979	5.898	5	36.000	3.082	47	5	ECHDC3	UTR3	NA
MB_SHH_T1--GL	10:11805838	C	NA	59	0	56	35.679	6.025	0	0	0	51	0	ECHDC3	UTR3	NA
MB_SHH_T1--1	11:117778637	G	T	73	0.027	71	36.366	6.268	2	30.000	5.657	65	1	TMPRSS13	UTR3	NA
MB_SHH_T1--2	11:117778637	G	T	36	0.028	35	36.857	6.886	1	41.000	0.000	34	1	TMPRSS13	UTR3	NA
MB_SHH_T1--3	11:117778637	G	NA	42	0	40	37.750	4.354	0	0	0	39	0	TMPRSS13	UTR3	NA
MB_SHH_T1--4	11:117778637	G	T	87	0.046	83	36.916	5.306	4	27.000	16.773	77	3	TMPRSS13	UTR3	NA
MB_SHH_T1--5	11:117778637	G	T	55	0.145	46	37.326	4.232	8	37.000	4.140	43	8	TMPRSS13	UTR3	NA
MB_SHH_T1--6	11:117778637	G	T	52	0.058	49	36.571	5.877	3	34.333	5.774	44	3	TMPRSS13	UTR3	NA
MB_SHH_T1--GL	11:117778637	G	NA	59	0	59	37.559	5.587	0	0	0	57	0	TMPRSS13	UTR3	NA
MB_SHH_T1--1	11:20142201	C	A	52	0.135	45	38.333	3.587	7	31.286	13.111	43	6	NAV2	UTR3	NA
MB_SHH_T1--2	11:20142201	C	A	39	0.051	37	36.865	7.087	2	38.000	1.414	35	2	NAV2	UTR3	NA
MB_SHH_T1--3	11:20142201	C	A	57	0.158	48	38.542	2.858	9	32.111	9.892	48	7	NAV2	UTR3	NA
MB_SHH_T1--4	11:20142201	C	A	68	0.059	64	37.781	5.565	4	25.750	16.520	60	2	NAV2	UTR3	NA
MB_SHH_T1--5	11:20142201	C	A	70	0.143	60	37.783	3.479	10	27.100	12.087	59	7	NAV2	UTR3	NA
MB_SHH_T1--6	11:20142201	C	A	40	0.075	37	36.622	7.403	3	30.667	7.767	34	2	NAV2	UTR3	NA
MB_SHH_T1--GL	11:20142201	C	NA	57	0	57	37.544	3.818	0	0	0	53	0	NAV2	UTR3	NA
MB_SHH_T1--1	1:12268157	C	NA	244	0	244	28.660	14.599	0	0	0	167	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--2	1:12268157	C	NA	156	0	155	30.768	12.655	0	0	0	113	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--3	1:12268157	C	NA	239	0	239	30.054	13.910	0	0	0	172	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--4	1:12268157	C	T	280	0.425	159	27.516	15.372	119	31.185	13.166	102	89	TNFRSF1B	UTR3	NA
MB_SHH_T1--5	1:12268157	C	NA	218	0	217	29.673	14.138	0	0	0	157	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--6	1:12268157	C	NA	210	0	209	28.550	13.833	0	0	0	142	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--GL	1:12268157	C	NA	270	0	265	29.608	13.765	0	0	0	190	0	TNFRSF1B	UTR3	NA
MB_SHH_T1--1	1:151378739	C	T	47	0.468	24	33.792	10.392	22	31.909	10.038	20	18	POGZ	exonic	synonymous_SNV
MB_SHH_T1--2	1:151378739	C	T	30	0.367	19	32.789	11.526	11	32.727	8.533	16	7	POGZ	exonic	synonymous_SNV
MB_SHH_T1--3	1:151378739	C	T	64	0.516	31	35.226	5.506	33	31.515	8.765	25	21	POGZ	exonic	synonymous_SNV
MB_SHH_T1--4	1:151378739	C	T	58	0.586	24	36.208	7.553	34	35.912	3.833	23	32	POGZ	exonic	synonymous_SNV
MB_SHH_T1--5	1:151378739	C	T	49	0.551	22	35.682	4.064	27	34.259	8.249	21	23	POGZ	exonic	synonymous_SNV
MB_SHH_T1--6	1:151378739	C	T	50	0.480	25	35.440	7.252	24	32.333	8.845	20	18	POGZ	exonic	synonymous_SNV
MB_SHH_T1--GL	1:151378739	C	NA	60	0	60	35.217	7.979	0	0	0	54	0	POGZ	exonic	synonymous_SNV
MB_SHH_T1--1	12:2017174	G	NA	63	0	63	36.175	7.120	0	0	0	60	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--2	12:2017174	G	NA	41	0	41	36.317	5.251	0	0	0	39	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--3	12:2017174	G	NA	63	0	63	35.762	7.803	0	0	0	59	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--4	12:2017174	G	A	53	0.189	43	33.791	10.578	10	36.100	3.725	36	10	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--5	12:2017174	G	NA	72	0	72	35.708	7.322	0	0	0	66	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--6	12:2017174	G	NA	59	0	59	35.407	4.363	0	0	0	55	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--GL	12:2017174	G	NA	50	0	50	34.980	6.796	0	0	0	46	0	CACNA2D4	exonic	synonymous_SNV
MB_SHH_T1--1	1:247654812	G	A	85	0.012	84	34.560	7.804	1	40.000	0.000	73	1	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--2	1:247654812	G	NA	63	0	63	36.016	7.223	0	0	0	59	0	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--3	1:247654812	G	NA	85	0	85	36.282	5.322	0	0	0	78	0	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--4	1:247654812	G	A	91	0.462	49	34.265	8.727	42	35.357	4.736	41	39	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--5	1:247654812	G	NA	72	0	72	34.875	8.825	0	0	0	64	0	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--6	1:247654812	G	NA	99	0	99	34.717	7.449	0	0	0	87	0	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--GL	1:247654812	G	NA	86	0	86	34.663	8.727	0	0	0	75	0	OR2W5	exonic	nonsynonymous_SNV
MB_SHH_T1--1	12:49441855	G	C	59	0.424	33	37.848	3.222	25	36.520	4.917	33	23	KMT2D	intronic	NA
MB_SHH_T1--2	12:49441855	G	NA	44	0	44	35.614	6.446	0	0	0	40	0	KMT2D	intronic	NA
MB_SHH_T1--3	12:49441855	G	NA	61	0	61	38.770	2.974	0	0	0	60	0	KMT2D	intronic	NA
MB_SHH_T1--4	12:49441855	G	NA	63	0	63	37.810	3.914	0	0	0	61	0	KMT2D	intronic	NA
MB_SHH_T1--5	12:49441855	G	NA	46	0	46	36.783	6.214	0	0	0	44	0	KMT2D	intronic	NA
MB_SHH_T1--6	12:49441855	G	NA	67	0	67	37.000	4.438	0	0	0	64	0	KMT2D	intronic	NA
MB_SHH_T1--GL	12:49441855	G	NA	59	0	59	38.356	3.498	0	0	0	57	0	KMT2D	intronic	NA
MB_SHH_T1--1	14:20228781	G	NA	113	0	113	36.000	5.619	0	0	0	105	0	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--2	14:20228781	G	NA	70	0	70	35.571	8.790	0	0	0	66	0	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--3	14:20228781	G	T	105	0.276	75	36.173	6.159	29	34.517	9.006	68	26	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--4	14:20228781	G	T	116	0.009	115	36.548	5.830	1	33.000	0.000	107	1	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--5	14:20228781	G	T	106	0.358	68	36.015	6.860	38	36.342	6.886	62	34	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--6	14:20228781	G	NA	88	0	88	35.261	7.790	0	0	0	79	0	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--GL	14:20228781	G	NA	124	0	124	36.419	6.443	0	0	0	114	0	OR4Q3(dist=12253),OR4M1(dist=19701)	intergenic	NA
MB_SHH_T1--1	14:65544747	C	NA	162	0	161	37.422	6.063	0	0	0	151	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--2	14:65544747	C	T	69	0.493	35	34.600	8.859	34	35.206	7.908	32	30	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--3	14:65544747	C	NA	145	0	145	37.903	5.211	0	0	0	137	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--4	14:65544747	C	NA	152	0	152	37.329	6.233	0	0	0	145	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--5	14:65544747	C	NA	152	0	152	37.697	4.247	0	0	0	146	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--6	14:65544747	C	NA	138	0	137	36.942	6.062	0	0	0	127	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--GL	14:65544747	C	NA	153	0	152	36.434	7.170	0	0	0	137	0	MAX	exonic	nonsynonymous_SNV
MB_SHH_T1--1	15:33955191	T	G	22	0.045	21	37.619	3.556	1	37.000	0.000	20	1	RYR3	intronic	NA
MB_SHH_T1--2	15:33955191	T	G	18	0.111	16	36.938	3.750	2	33.500	0.707	16	2	RYR3	intronic	NA
MB_SHH_T1--3	15:33955191	T	G	33	0.091	30	38.300	3.476	3	33.000	1.732	29	3	RYR3	intronic	NA
MB_SHH_T1--4	15:33955191	T	G	32	0.188	26	32.962	11.797	6	32.167	1.835	21	6	RYR3	intronic	NA
MB_SHH_T1--5	15:33955191	T	NA	17	0	17	34.588	5.478	0	0	0	14	0	RYR3	intronic	NA
MB_SHH_T1--6	15:33955191	T	NA	28	0	27	35.815	6.276	0	0	0	26	0	RYR3	intronic	NA
MB_SHH_T1--GL	15:33955191	T	NA	36	0	36	35.639	7.092	0	0	0	32	0	RYR3	intronic	NA
MB_SHH_T1--1	15:45444213	C	NA	55	0	55	35.145	7.072	0	0	0	50	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--2	15:45444213	C	NA	29	0	29	29.207	13.124	0	0	0	21	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--3	15:45444213	C	T	64	0.391	39	35.308	5.011	25	35.480	5.546	36	22	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--4	15:45444213	C	NA	76	0	76	33.895	9.036	0	0	0	66	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--5	15:45444213	C	NA	60	0	60	34.350	7.826	0	0	0	53	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--6	15:45444213	C	NA	78	0	77	34.506	7.254	0	0	0	67	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--GL	15:45444213	C	NA	67	0	67	33.493	10.014	0	0	0	56	0	DUOX1	exonic	synonymous_SNV
MB_SHH_T1--1	16:2821988	T	G	37	0.162	31	32.000	9.536	6	31.500	4.324	23	4	TCEB2	UTR3	NA
MB_SHH_T1--2	16:2821988	T	G	22	0.091	20	28.600	7.803	2	34.500	0.707	10	2	TCEB2	UTR3	NA
MB_SHH_T1--3	16:2821988	T	G	28	0.036	26	32.577	8.659	1	31.000	0.000	19	1	TCEB2	UTR3	NA
MB_SHH_T1--4	16:2821988	T	G	47	0.128	41	32.171	10.599	6	32.167	5.345	33	5	TCEB2	UTR3	NA
MB_SHH_T1--5	16:2821988	T	G	30	0.067	28	31.286	10.617	2	34.500	0.707	21	2	TCEB2	UTR3	NA
MB_SHH_T1--6	16:2821988	T	G	35	0.114	31	28.968	11.482	4	24.250	14.930	22	3	TCEB2	UTR3	NA
MB_SHH_T1--GL	16:2821988	T	NA	35	0	35	32.857	7.480	0	0	0	27	0	TCEB2	UTR3	NA
MB_SHH_T1--1	1:68947318	C	A	65	0.108	58	36.707	6.302	7	38.429	3.409	52	7	DEPDC1	intronic	NA
MB_SHH_T1--2	1:68947318	C	A	36	0.167	30	38.367	2.918	6	35.000	4.517	30	6	DEPDC1	intronic	NA
MB_SHH_T1--3	1:68947318	C	A	65	0.077	60	38.183	3.563	5	40.800	0.447	58	5	DEPDC1	intronic	NA
MB_SHH_T1--4	1:68947318	C	A	68	0.074	63	38.238	3.509	5	40.600	0.894	62	5	DEPDC1	intronic	NA
MB_SHH_T1--5	1:68947318	C	A	68	0.059	64	37.047	4.488	4	41.000	0.000	61	4	DEPDC1	intronic	NA
MB_SHH_T1--6	1:68947318	C	NA	50	0	49	38.551	2.739	0	0	0	49	0	DEPDC1	intronic	NA
MB_SHH_T1--GL	1:68947318	C	NA	54	0	53	37.642	4.650	0	0	0	52	0	DEPDC1	intronic	NA
MB_SHH_T1--1	17:21202056	G	A	46	0.130	40	35.250	5.986	6	33.833	3.764	36	5	MAP2K3	intronic	NA
MB_SHH_T1--2	17:21202056	G	A	27	0.148	23	32.174	12.405	4	26.000	8.446	19	1	MAP2K3	intronic	NA
MB_SHH_T1--3	17:21202056	G	A	31	0.258	23	34.696	8.936	8	33.875	4.883	21	6	MAP2K3	intronic	NA
MB_SHH_T1--4	17:21202056	G	A	43	0.186	35	33.229	11.949	8	33.250	7.324	29	7	MAP2K3	intronic	NA
MB_SHH_T1--5	17:21202056	G	A	51	0.196	41	33.610	7.211	10	29.900	13.609	35	7	MAP2K3	intronic	NA
MB_SHH_T1--6	17:21202056	G	A	29	0.172	24	36.375	4.862	5	29.400	11.349	23	4	MAP2K3	intronic	NA
MB_SHH_T1--GL	17:21202056	G	NA	39	0	38	36.395	2.900	0	0	0	38	0	MAP2K3	intronic	NA
MB_SHH_T1--1	18:68838318	T	C	54	0.130	47	37.638	4.697	7	38.857	1.773	46	7	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--2	18:68838318	T	NA	22	0	21	35.571	8.471	0	0	0	19	0	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--3	18:68838318	T	C	61	0.082	56	36.893	5.786	5	39.800	2.168	53	5	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--4	18:68838318	T	C	37	0.243	28	36.071	7.358	9	38.889	3.296	27	9	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--5	18:68838318	T	C	77	0.078	71	38.113	5.067	6	37.000	3.464	70	6	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--6	18:68838318	T	C	40	0.050	38	36.789	3.878	2	31.000	9.899	36	1	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--GL	18:68838318	T	NA	36	0	36	36.861	4.447	0	0	0	35	0	GTSCR1(dist=520225),RP11-510D19.1(dist=348882)	intergenic	NA
MB_SHH_T1--1	19:929838	C	NA	63	0	61	34.148	7.141	0	0	0	55	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--2	19:929838	C	NA	46	0	46	31.804	8.599	0	0	0	33	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--3	19:929838	C	NA	60	0	60	32.883	10.243	0	0	0	50	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--4	19:929838	C	T	57	0.404	31	27.548	14.438	23	27.391	13.149	21	14	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--5	19:929838	C	NA	70	0	70	31.971	11.075	0	0	0	56	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--6	19:929838	C	NA	77	0	77	34.364	8.172	0	0	0	69	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--GL	19:929838	C	NA	77	0	76	31.500	10.810	0	0	0	57	0	ARID3A	exonic	stopgain_SNV
MB_SHH_T1--1	20:57246493	G	NA	51	0	44	29.318	10.399	0	0	0	31	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--2	20:57246493	G	NA	33	0	29	28.414	11.565	0	0	0	17	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--3	20:57246493	G	T	41	0.049	38	28.079	11.166	2	20.500	17.678	24	1	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--4	20:57246493	G	NA	57	0	50	29.300	11.018	0	0	0	34	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--5	20:57246493	G	NA	30	0	19	25.842	11.692	0	0	0	12	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--6	20:57246493	G	NA	41	0	33	30.182	11.561	0	0	0	23	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--GL	20:57246493	G	NA	46	0	42	28.143	11.475	0	0	0	24	0	STX16-NPEPL1	ncRNA_intronic	NA
MB_SHH_T1--1	22:38481019	A	G	59	0.186	48	30.583	9.390	11	33.182	4.729	33	10	BAIAP2L2	UTR3	NA
MB_SHH_T1--2	22:38481019	A	G	35	0.029	34	31.441	7.828	1	33.000	0.000	25	1	BAIAP2L2	UTR3	NA
MB_SHH_T1--3	22:38481019	A	G	46	0.022	45	31.978	6.040	1	37.000	0.000	32	1	BAIAP2L2	UTR3	NA
MB_SHH_T1--4	22:38481019	A	G	41	0.098	37	31.054	7.989	4	35.250	1.258	25	4	BAIAP2L2	UTR3	NA
MB_SHH_T1--5	22:38481019	A	G	57	0.070	53	33.358	8.806	4	24.000	15.144	46	2	BAIAP2L2	UTR3	NA
MB_SHH_T1--6	22:38481019	A	NA	55	0	53	29.302	11.360	0	0	0	40	0	BAIAP2L2	UTR3	NA
MB_SHH_T1--GL	22:38481019	A	NA	36	0	35	32.457	7.334	0	0	0	26	0	BAIAP2L2	UTR3	NA
MB_SHH_T1--1	2:96779389	G	NA	47	0	45	34.622	8.473	0	0	0	37	0	ADRA2B	UTR3	NA
MB_SHH_T1--2	2:96779389	G	NA	30	0	29	33.517	10.031	0	0	0	25	0	ADRA2B	UTR3	NA
MB_SHH_T1--3	2:96779389	G	C	62	0.419	35	35.571	7.520	26	34.308	7.807	33	22	ADRA2B	UTR3	NA
MB_SHH_T1--4	2:96779389	G	NA	72	0	70	31.314	12.748	0	0	0	53	0	ADRA2B	UTR3	NA
MB_SHH_T1--5	2:96779389	G	NA	62	0	60	32.733	9.632	0	0	0	45	0	ADRA2B	UTR3	NA
MB_SHH_T1--6	2:96779389	G	NA	55	0	55	32.818	11.109	0	0	0	46	0	ADRA2B	UTR3	NA
MB_SHH_T1--GL	2:96779389	G	NA	48	0	48	31.708	13.410	0	0	0	36	0	ADRA2B	UTR3	NA
MB_SHH_T1--1	3:197362889	C	T	58	0.017	35	35.029	8.090	1	41.000	0.000	31	1	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--2	3:197362889	C	T	32	0.125	17	33.824	9.449	4	25.500	19.053	14	2	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--3	3:197362889	C	T	52	0.038	35	37.457	3.876	2	24.000	21.213	33	1	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--4	3:197362889	C	T	45	0.044	33	35.455	7.281	2	34.000	0.000	28	2	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--5	3:197362889	C	T	36	0.139	20	38.000	3.061	5	37.600	3.050	20	5	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--6	3:197362889	C	T	41	0.122	25	37.600	4.387	5	37.800	4.324	22	5	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--GL	3:197362889	C	NA	45	0	33	37.727	4.079	0	0	0	31	0	LOC220729(dist=8137),KIAA0226(dist=35370)	intergenic	NA
MB_SHH_T1--1	3:48310887	C	T	70	0.014	44	35.068	6.872	1	34.000	0.000	38	1	ZNF589	UTR3	NA
MB_SHH_T1--2	3:48310887	C	NA	41	0	27	34.185	9.315	0	0	0	24	0	ZNF589	UTR3	NA
MB_SHH_T1--3	3:48310887	C	NA	56	0	27	37.296	2.998	0	0	0	27	0	ZNF589	UTR3	NA
MB_SHH_T1--4	3:48310887	C	T	57	0.053	8	26.125	11.307	3	32.000	2.646	4	3	ZNF589	UTR3	NA
MB_SHH_T1--5	3:48310887	C	T	62	0.032	35	37.000	3.387	2	34.000	0.000	35	2	ZNF589	UTR3	NA
MB_SHH_T1--6	3:48310887	C	T	76	0.026	52	36.904	3.538	2	34.500	0.707	50	2	ZNF589	UTR3	NA
MB_SHH_T1--GL	3:48310887	C	NA	84	0	49	33.000	10.173	0	0	0	40	0	ZNF589	UTR3	NA
MB_SHH_T1--1	4:55161324	C	T	52	0.442	29	36.897	8.453	23	34.478	8.404	27	19	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--2	4:55161324	C	NA	33	0	32	37.219	6.890	0	0	0	31	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--3	4:55161324	C	NA	53	0	53	38.245	4.540	0	0	0	49	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--4	4:55161324	C	NA	70	0	70	36.443	7.512	0	0	0	62	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--5	4:55161324	C	NA	55	0	55	36.073	7.686	0	0	0	47	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--6	4:55161324	C	NA	53	0	53	36.170	10.199	0	0	0	48	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--GL	4:55161324	C	NA	46	0	46	37.565	3.082	0	0	0	45	0	PDGFRA	exonic	nonsynonymous_SNV
MB_SHH_T1--1	5:112360903	C	NA	48	0	48	35.583	6.909	0	0	0	45	0	MCC	UTR3	NA
MB_SHH_T1--2	5:112360903	C	NA	27	0	27	33.444	8.732	0	0	0	21	0	MCC	UTR3	NA
MB_SHH_T1--3	5:112360903	C	NA	41	0	41	34.707	9.190	0	0	0	36	0	MCC	UTR3	NA
MB_SHH_T1--4	5:112360903	C	T	59	0.458	32	32.625	12.373	27	28.296	14.016	26	16	MCC	UTR3	NA
MB_SHH_T1--5	5:112360903	C	NA	47	0	46	34.304	9.589	0	0	0	39	0	MCC	UTR3	NA
MB_SHH_T1--6	5:112360903	C	NA	43	0	42	34.310	9.280	0	0	0	33	0	MCC	UTR3	NA
MB_SHH_T1--GL	5:112360903	C	NA	50	0	50	34.280	9.324	0	0	0	43	0	MCC	UTR3	NA
MB_SHH_T1--1	5:150311859	G	NA	39	0	39	36.333	6.822	0	0	0	37	0	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--2	5:150311859	G	A	29	0.207	23	37.522	3.703	6	34.167	3.430	22	6	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--3	5:150311859	G	A	52	0.058	49	37.837	3.484	3	36.000	5.568	48	3	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--4	5:150311859	G	A	61	0.098	55	37.218	6.048	6	35.833	1.329	53	6	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--5	5:150311859	G	A	38	0.132	33	37.727	3.923	5	34.200	2.168	32	5	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--6	5:150311859	G	A	45	0.067	42	36.690	6.350	3	32.000	1.732	41	3	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--GL	5:150311859	G	NA	41	0	41	35.268	8.975	0	0	0	36	0	ZNF300P1	ncRNA_intronic	NA
MB_SHH_T1--1	5:53816341	G	A	44	0.045	42	30.786	12.098	2	37.000	0.000	34	2	SNX18	UTR3	NA
MB_SHH_T1--2	5:53816341	G	NA	30	0	30	33.567	8.266	0	0	0	25	0	SNX18	UTR3	NA
MB_SHH_T1--3	5:53816341	G	A	29	0.241	22	31.045	12.045	7	32.143	3.185	16	6	SNX18	UTR3	NA
MB_SHH_T1--4	5:53816341	G	A	61	0.049	58	32.310	10.492	3	33.333	6.351	46	2	SNX18	UTR3	NA
MB_SHH_T1--5	5:53816341	G	A	39	0.051	37	34.973	6.894	2	35.500	2.121	32	2	SNX18	UTR3	NA
MB_SHH_T1--6	5:53816341	G	A	37	0.054	35	34.486	8.909	2	32.000	7.071	32	1	SNX18	UTR3	NA
MB_SHH_T1--GL	5:53816341	G	NA	36	0	36	33.667	8.731	0	0	0	32	0	SNX18	UTR3	NA
MB_SHH_T1--1	7:82451802	G	A	46	0.130	40	35.300	8.188	6	37.333	5.715	36	5	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--2	7:82451802	G	NA	28	0	28	35.500	7.084	0	0	0	25	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--3	7:82451802	G	NA	50	0	50	36.860	4.140	0	0	0	48	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--4	7:82451802	G	NA	61	0	61	36.557	4.418	0	0	0	59	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--5	7:82451802	G	NA	71	0	71	36.169	7.237	0	0	0	66	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--6	7:82451802	G	NA	42	0	41	35.951	8.234	0	0	0	38	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--GL	7:82451802	G	NA	49	0	49	35.816	5.403	0	0	0	46	0	PCLO	exonic	nonsynonymous_SNV
MB_SHH_T1--1	9:26109983	G	A	53	0.019	52	36.346	5.632	1	41.000	0.000	47	1	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--2	9:26109983	G	A	30	0.600	12	32.917	6.640	18	35.278	9.603	11	16	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--3	9:26109983	G	A	57	0.368	35	34.943	6.024	21	36.714	8.736	31	19	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--4	9:26109983	G	A	38	0.447	21	31.571	9.053	17	35.588	8.544	14	15	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--5	9:26109983	G	A	73	0.438	41	36.293	6.600	32	36.000	9.055	37	28	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--6	9:26109983	G	NA	42	0	42	37.405	3.401	0	0	0	42	0	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--GL	9:26109983	G	NA	40	0	40	36.125	6.474	0	0	0	36	0	LOC100506422	exonic	synonymous_SNV
MB_SHH_T1--1	9:79318389	A	NA	28	0	8	34.750	5.849	0	0	0	7	0	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--2	9:79318389	A	NA	23	0	5	31.800	16.724	0	0	0	4	0	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--3	9:79318389	A	G	14	0.071	2	33.000	11.314	1	29.000	0.000	1	0	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--4	9:79318389	A	NA	30	0	5	34.600	5.595	0	0	0	4	0	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--5	9:79318389	A	G	31	0.097	6	32.500	15.003	3	33.333	0.577	5	3	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--6	9:79318389	A	G	28	0.143	6	35.000	3.521	4	33.500	2.380	6	4	PRUNE2	exonic	synonymous_SNV
MB_SHH_T1--GL	9:79318389	A	G	83	0.012	50	30.760	12.197	1	31.000	0.000	40	1	PRUNE2	exonic	synonymous_SNV
MB_SHH_T2--1	chr10:116228096	C	T	48	0.083	44	33.341	6.069	4	32.500	9.000	37	3	ABLIM1	intronic	NA
MB_SHH_T2--2	chr10:116228096	C	T	51	0.059	48	34.562	5.311	3	37.000	0.000	41	3	ABLIM1	intronic	NA
MB_SHH_T2--3	chr10:116228096	C	T	52	0.077	48	34.875	4.139	4	37.000	0.000	42	4	ABLIM1	intronic	NA
MB_SHH_T2--4	chr10:116228096	C	T	31	0.065	29	34.862	5.649	2	33.500	4.950	26	2	ABLIM1	intronic	NA
MB_SHH_T2--5	chr10:116228096	C	T	48	0.125	42	34.024	6.154	6	33.667	7.230	37	5	ABLIM1	intronic	NA
MB_SHH_T2--6	chr10:116228096	C	T	35	0.171	29	36.103	3.075	6	34.833	4.401	28	5	ABLIM1	intronic	NA
MB_SHH_T2--GL	chr10:116228096	C	NA	49	0	49	33.857	6.674	0	0	0	40	0	ABLIM1	intronic	NA
MB_SHH_T2--1	chr10:116228097	A	G	48	0.062	44	35.000	3.840	3	37.000	0.000	40	3	ABLIM1	intronic	NA
MB_SHH_T2--2	chr10:116228097	A	G	49	0.061	46	35.739	4.203	3	37.000	0.000	43	3	ABLIM1	intronic	NA
MB_SHH_T2--3	chr10:116228097	A	G	51	0.078	47	34.489	5.812	4	36.500	1.000	40	4	ABLIM1	intronic	NA
MB_SHH_T2--4	chr10:116228097	A	G	29	0.069	27	36.741	3.008	2	35.000	2.828	26	2	ABLIM1	intronic	NA
MB_SHH_T2--5	chr10:116228097	A	G	46	0.109	39	34.615	5.711	5	35.200	4.025	36	4	ABLIM1	intronic	NA
MB_SHH_T2--6	chr10:116228097	A	G	35	0.171	29	35.931	5.120	6	35.833	2.041	27	6	ABLIM1	intronic	NA
MB_SHH_T2--GL	chr10:116228097	A	NA	46	0	46	34.935	6.410	0	0	0	39	0	ABLIM1	intronic	NA
MB_SHH_T2--1	chr10:18439810	A	NA	20	0	20	37.000	3.061	0	0	0	20	0	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--2	chr10:18439810	A	T	32	0.156	27	36.963	3.858	5	33.000	1.414	25	5	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--3	chr10:18439810	A	T	42	0.214	33	37.212	5.260	9	33.667	1.414	31	9	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--4	chr10:18439810	A	NA	21	0	21	35.286	7.792	0	0	0	19	0	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--5	chr10:18439810	A	T	51	0.608	20	36.350	5.254	31	33.387	3.353	18	29	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--6	chr10:18439810	A	NA	16	0	16	36.562	5.819	0	0	0	13	0	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--GL	chr10:18439810	A	NA	38	0	38	37.737	5.958	0	0	0	36	0	CACNB2(NM_201597:exon2:c.121-2A>T,NM_201596:exon2:c.121-2A>T,NM_201593:exon2:c.121-2A>T,NM_001167945:exon2:c.37-2A>T,NM_201572:exon2:c.37-2A>T,NM_201571:exon2:c.37-2A>T)	splicing	NA
MB_SHH_T2--1	chr10:18439811	G	NA	25	0	25	36.240	2.934	0	0	0	25	0	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--2	chr10:18439811	G	NA	31	0	30	36.300	6.069	0	0	0	29	0	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--3	chr10:18439811	G	T	38	0.026	36	37.278	3.762	1	35.000	0.000	36	1	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--4	chr10:18439811	G	NA	23	0	23	36.565	3.752	0	0	0	22	0	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--5	chr10:18439811	G	T	54	0.519	26	36.000	4.354	28	33.607	2.266	24	27	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--6	chr10:18439811	G	NA	18	0	18	36.222	5.408	0	0	0	15	0	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--GL	chr10:18439811	G	NA	41	0	41	37.268	4.837	0	0	0	39	0	CACNB2(NM_201597:exon2:c.121-1G>T,NM_201596:exon2:c.121-1G>T,NM_201593:exon2:c.121-1G>T,NM_001167945:exon2:c.37-1G>T,NM_201572:exon2:c.37-1G>T,NM_201571:exon2:c.37-1G>T)	splicing	NA
MB_SHH_T2--1	chr10:78868168	A	NA	86	0	29	34.207	5.493	0	0	0	25	0	KCNMA1	intronic	NA
MB_SHH_T2--2	chr10:78868168	A	NA	105	0	40	33.400	7.309	0	0	0	33	0	KCNMA1	intronic	NA
MB_SHH_T2--3	chr10:78868168	A	NA	96	0	19	32.316	6.351	0	0	0	12	0	KCNMA1	intronic	NA
MB_SHH_T2--4	chr10:78868168	A	NA	111	0	42	35.262	3.562	0	0	0	40	0	KCNMA1	intronic	NA
MB_SHH_T2--5	chr10:78868168	A	NA	70	0	17	35.059	5.297	0	0	0	16	0	KCNMA1	intronic	NA
MB_SHH_T2--6	chr10:78868168	A	C	58	0.172	18	35.000	6.240	10	30.800	5.095	16	7	KCNMA1	intronic	NA
MB_SHH_T2--GL	chr10:78868168	A	NA	115	0	38	35.579	4.746	0	0	0	36	0	KCNMA1	intronic	NA
MB_SHH_T2--1	chr11:1651178	G	NA	101	0	101	33.851	6.930	0	0	0	84	0	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--2	chr11:1651178	G	NA	56	0	56	34.339	6.860	0	0	0	47	0	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--3	chr11:1651178	G	NA	50	0	50	33.760	6.126	0	0	0	41	0	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--4	chr11:1651178	G	A	33	0.061	31	32.516	7.061	2	35.000	2.828	22	2	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--5	chr11:1651178	G	A	56	0.250	41	33.463	7.775	14	34.000	5.449	31	12	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--6	chr11:1651178	G	NA	58	0	58	33.121	7.410	0	0	0	47	0	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--GL	chr11:1651178	G	NA	39	0	39	33.385	5.571	0	0	0	29	0	KRTAP5-5	exonic	synonymous_SNV
MB_SHH_T2--1	chr1:142535833	G	A	61	0.230	47	36.766	4.819	14	35.500	2.565	45	14	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--2	chr1:142535833	G	A	47	0.213	36	36.583	4.765	10	33.200	4.417	33	8	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--3	chr1:142535833	G	A	48	0.250	36	37.472	3.517	12	35.667	2.309	35	12	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--4	chr1:142535833	G	A	40	0.200	32	35.531	8.040	8	35.250	4.166	28	8	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--5	chr1:142535833	G	A	30	0.033	29	35.862	4.232	1	38.000	0.000	27	1	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--6	chr1:142535833	G	A	52	0.250	39	36.282	4.383	13	34.846	6.122	34	12	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--GL	chr1:142535833	G	NA	46	0	46	37.543	4.113	0	0	0	44	0	NONE(dist=NONE),ANKRD20A12P(dist=161588)	intergenic	NA
MB_SHH_T2--1	chr1:150315728	T	A	96	0.104	47	35.809	4.417	10	32.800	5.432	42	8	PRPF3	intronic	NA
MB_SHH_T2--2	chr1:150315728	T	A	116	0.086	73	34.466	6.780	10	32.400	5.296	64	7	PRPF3	intronic	NA
MB_SHH_T2--3	chr1:150315728	T	NA	108	0	43	35.395	5.482	0	0	0	40	0	PRPF3	intronic	NA
MB_SHH_T2--4	chr1:150315728	T	NA	84	0	34	37.412	3.602	0	0	0	33	0	PRPF3	intronic	NA
MB_SHH_T2--5	chr1:150315728	T	A	112	0.027	70	34.386	6.630	3	34.667	1.155	62	3	PRPF3	intronic	NA
MB_SHH_T2--6	chr1:150315728	T	NA	73	0	19	34.895	6.350	0	0	0	16	0	PRPF3	intronic	NA
MB_SHH_T2--GL	chr1:150315728	T	NA	105	0	40	37.125	3.376	0	0	0	38	0	PRPF3	intronic	NA
MB_SHH_T2--1	chr11:63978675	T	NA	79	0	72	23.056	9.665	0	0	0	24	0	FERMT3	intronic	NA
MB_SHH_T2--2	chr11:63978675	T	G	69	0.348	45	25.933	10.201	24	21.708	9.290	23	6	FERMT3	intronic	NA
MB_SHH_T2--3	chr11:63978675	T	NA	58	0	51	22.980	9.052	0	0	0	16	0	FERMT3	intronic	NA
MB_SHH_T2--4	chr11:63978675	T	G	57	0.298	39	24.590	9.552	17	21.647	7.681	16	3	FERMT3	intronic	NA
MB_SHH_T2--5	chr11:63978675	T	NA	75	0	51	23.941	10.629	0	0	0	23	0	FERMT3	intronic	NA
MB_SHH_T2--6	chr11:63978675	T	G	83	0.325	56	24.107	8.128	27	21.444	8.838	20	7	FERMT3	intronic	NA
MB_SHH_T2--GL	chr11:63978675	T	NA	57	0	54	21.741	9.987	0	0	0	18	0	FERMT3	intronic	NA
MB_SHH_T2--1	chr11:63997583	A	NA	90	0	78	23.731	9.652	0	0	0	30	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--2	chr11:63997583	A	NA	66	0	51	21.922	10.089	0	0	0	16	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--3	chr11:63997583	A	NA	59	0	50	23.420	8.983	0	0	0	15	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--4	chr11:63997583	A	NA	64	0	51	21.039	9.855	0	0	0	13	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--5	chr11:63997583	A	C	80	0.263	59	24.610	8.989	21	21.476	10.815	25	9	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--6	chr11:63997583	A	NA	59	0	47	23.085	9.575	0	0	0	14	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--GL	chr11:63997583	A	NA	60	0	52	22.000	9.996	0	0	0	15	0	DNAJC4;NUDT22	upstream;downstream	NA
MB_SHH_T2--1	chr1:16937371	T	C	31	0.161	25	37.160	3.870	5	35.600	2.408	24	5	NBPF1	intronic	NA
MB_SHH_T2--2	chr1:16937371	T	NA	35	0	35	36.400	5.430	0	0	0	34	0	NBPF1	intronic	NA
MB_SHH_T2--3	chr1:16937371	T	C	47	0.043	45	36.978	4.076	2	36.000	4.243	43	2	NBPF1	intronic	NA
MB_SHH_T2--4	chr1:16937371	T	C	27	0.037	26	37.077	3.346	1	37.000	0.000	25	1	NBPF1	intronic	NA
MB_SHH_T2--5	chr1:16937371	T	NA	35	0	35	36.314	4.689	0	0	0	32	0	NBPF1	intronic	NA
MB_SHH_T2--6	chr1:16937371	T	C	37	0.054	35	36.171	3.443	2	33.500	10.607	34	1	NBPF1	intronic	NA
MB_SHH_T2--GL	chr1:16937371	T	NA	37	0	37	36.676	4.256	0	0	0	36	0	NBPF1	intronic	NA
MB_SHH_T2--1	chr1:171553559	C	NA	22	0	22	33.591	5.360	0	0	0	19	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr1:171553559	C	NA	28	0	28	34.464	4.765	0	0	0	23	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr1:171553559	C	NA	32	0	32	33.969	6.188	0	0	0	29	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr1:171553559	C	NA	37	0	37	34.297	5.763	0	0	0	34	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr1:171553559	C	A	17	0.176	14	32.286	8.232	3	37.000	3.464	12	3	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr1:171553559	C	NA	19	0	19	33.684	4.070	0	0	0	17	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr1:171553559	C	NA	49	0	49	35.571	3.360	0	0	0	46	0	PRRC2C	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr1:210414880	T	C	31	0.290	22	35.727	6.902	9	35.111	6.936	21	8	SERTAD4	intronic	NA
MB_SHH_T2--2	chr1:210414880	T	NA	29	0	28	36.071	4.136	0	0	0	26	0	SERTAD4	intronic	NA
MB_SHH_T2--3	chr1:210414880	T	C	28	0.036	26	35.923	5.535	1	41.000	0.000	24	1	SERTAD4	intronic	NA
MB_SHH_T2--4	chr1:210414880	T	C	38	0.316	23	35.217	3.692	12	34.667	4.141	22	11	SERTAD4	intronic	NA
MB_SHH_T2--5	chr1:210414880	T	NA	18	0	16	36.062	3.415	0	0	0	15	0	SERTAD4	intronic	NA
MB_SHH_T2--6	chr1:210414880	T	NA	19	0	19	35.316	6.566	0	0	0	17	0	SERTAD4	intronic	NA
MB_SHH_T2--GL	chr1:210414880	T	NA	34	0	34	36.147	3.350	0	0	0	33	0	SERTAD4	intronic	NA
MB_SHH_T2--1	chr12:104379515	C	G	49	0.204	39	33.436	6.553	10	33.400	1.265	32	10	TDG	intronic	NA
MB_SHH_T2--2	chr12:104379515	C	NA	31	0	31	33.419	8.115	0	0	0	26	0	TDG	intronic	NA
MB_SHH_T2--3	chr12:104379515	C	NA	31	0	31	35.839	4.435	0	0	0	28	0	TDG	intronic	NA
MB_SHH_T2--4	chr12:104379515	C	NA	25	0	25	33.640	4.536	0	0	0	20	0	TDG	intronic	NA
MB_SHH_T2--5	chr12:104379515	C	G	33	0.303	23	33.348	9.413	10	30.900	8.157	17	9	TDG	intronic	NA
MB_SHH_T2--6	chr12:104379515	C	NA	27	0	27	34.963	6.671	0	0	0	26	0	TDG	intronic	NA
MB_SHH_T2--GL	chr12:104379515	C	NA	36	0	36	35.667	3.795	0	0	0	34	0	TDG	intronic	NA
MB_SHH_T2--1	chr12:105432063	C	A	31	0.258	23	35.652	3.892	8	31.625	9.635	22	7	ALDH1L2	intronic	NA
MB_SHH_T2--2	chr12:105432063	C	A	24	0.125	21	34.762	4.711	3	28.667	17.039	18	2	ALDH1L2	intronic	NA
MB_SHH_T2--3	chr12:105432063	C	A	41	0.146	35	34.057	4.087	6	29.833	7.414	29	4	ALDH1L2	intronic	NA
MB_SHH_T2--4	chr12:105432063	C	A	25	0.240	19	36.000	3.682	6	26.500	11.185	18	3	ALDH1L2	intronic	NA
MB_SHH_T2--5	chr12:105432063	C	A	31	0.129	27	35.444	4.774	4	30.250	6.238	25	2	ALDH1L2	intronic	NA
MB_SHH_T2--6	chr12:105432063	C	A	24	0.042	22	33.727	5.946	1	38.000	0.000	18	1	ALDH1L2	intronic	NA
MB_SHH_T2--GL	chr12:105432063	C	NA	34	0	33	36.000	2.658	0	0	0	33	0	ALDH1L2	intronic	NA
MB_SHH_T2--1	chr1:21102502	C	A	55	0.091	50	35.000	8.074	5	33.000	1.414	43	5	HP1BP3	intronic	NA
MB_SHH_T2--2	chr1:21102502	C	A	56	0.161	47	35.468	7.743	9	34.333	1.414	41	9	HP1BP3	intronic	NA
MB_SHH_T2--3	chr1:21102502	C	A	58	0.172	48	35.438	7.267	10	34.000	1.054	44	10	HP1BP3	intronic	NA
MB_SHH_T2--4	chr1:21102502	C	A	61	0.230	47	36.830	6.222	14	33.571	1.453	42	14	HP1BP3	intronic	NA
MB_SHH_T2--5	chr1:21102502	C	A	42	0.119	36	38.306	2.482	5	34.200	1.789	36	5	HP1BP3	intronic	NA
MB_SHH_T2--6	chr1:21102502	C	A	43	0.256	32	34.250	8.238	11	34.636	1.748	26	11	HP1BP3	intronic	NA
MB_SHH_T2--GL	chr1:21102502	C	NA	68	0	67	34.582	8.074	0	0	0	54	0	HP1BP3	intronic	NA
MB_SHH_T2--1	chr12:121465644	G	A	114	0.500	57	37.421	4.383	57	36.930	5.725	52	53	OASL	intronic	NA
MB_SHH_T2--2	chr12:121465644	G	NA	90	0	87	37.264	3.565	0	0	0	84	0	OASL	intronic	NA
MB_SHH_T2--3	chr12:121465644	G	NA	92	0	92	36.554	6.113	0	0	0	87	0	OASL	intronic	NA
MB_SHH_T2--4	chr12:121465644	G	NA	89	0	88	37.580	4.425	0	0	0	85	0	OASL	intronic	NA
MB_SHH_T2--5	chr12:121465644	G	NA	107	0	102	37.480	3.827	0	0	0	96	0	OASL	intronic	NA
MB_SHH_T2--6	chr12:121465644	G	NA	99	0	95	37.326	4.433	0	0	0	93	0	OASL	intronic	NA
MB_SHH_T2--GL	chr12:121465644	G	NA	77	0	75	37.053	4.722	0	0	0	69	0	OASL	intronic	NA
MB_SHH_T2--1	chr12:122762763	G	A	49	0.143	42	32.833	7.997	7	34.143	1.069	30	7	CLIP1	intronic	NA
MB_SHH_T2--2	chr12:122762763	G	A	42	0.238	32	31.969	8.548	10	30.600	9.131	21	9	CLIP1	intronic	NA
MB_SHH_T2--3	chr12:122762763	G	NA	32	0	32	31.156	7.911	0	0	0	22	0	CLIP1	intronic	NA
MB_SHH_T2--4	chr12:122762763	G	A	47	0.021	46	30.370	9.185	1	35.000	0.000	28	1	CLIP1	intronic	NA
MB_SHH_T2--5	chr12:122762763	G	A	40	0.150	34	31.588	7.451	6	33.167	2.858	22	5	CLIP1	intronic	NA
MB_SHH_T2--6	chr12:122762763	G	A	24	0.125	21	33.095	5.366	3	31.667	4.163	15	2	CLIP1	intronic	NA
MB_SHH_T2--GL	chr12:122762763	G	NA	44	0	44	29.682	8.639	0	0	0	28	0	CLIP1	intronic	NA
MB_SHH_T2--1	chr1:23409721	C	NA	41	0	41	34.976	4.783	0	0	0	40	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr1:23409721	C	NA	29	0	29	33.793	5.659	0	0	0	26	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr1:23409721	C	NA	34	0	34	35.118	4.291	0	0	0	32	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr1:23409721	C	NA	22	0	22	36.364	3.685	0	0	0	22	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr1:23409721	C	G	22	0.273	16	35.312	3.807	6	35.667	1.633	16	6	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr1:23409721	C	NA	33	0	33	34.636	4.293	0	0	0	29	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr1:23409721	C	NA	38	0	38	35.289	3.734	0	0	0	36	0	KDM1A	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr1:236385473	C	G	25	0.040	24	36.042	5.622	1	37.000	0.000	21	1	ERO1LB	intronic	NA
MB_SHH_T2--2	chr1:236385473	C	NA	26	0	25	33.640	7.387	0	0	0	20	0	ERO1LB	intronic	NA
MB_SHH_T2--3	chr1:236385473	C	G	29	0.069	27	33.185	8.274	2	37.000	0.000	23	2	ERO1LB	intronic	NA
MB_SHH_T2--4	chr1:236385473	C	G	24	0.083	22	35.318	5.558	2	37.000	0.000	20	2	ERO1LB	intronic	NA
MB_SHH_T2--5	chr1:236385473	C	G	24	0.042	23	34.522	7.844	1	37.000	0.000	20	1	ERO1LB	intronic	NA
MB_SHH_T2--6	chr1:236385473	C	G	24	0.250	18	35.111	5.465	6	37.000	0.000	15	6	ERO1LB	intronic	NA
MB_SHH_T2--GL	chr1:236385473	C	NA	39	0	38	35.868	5.174	0	0	0	35	0	ERO1LB	intronic	NA
MB_SHH_T2--1	chr1:237060612	A	G	103	0.019	98	33.041	7.461	2	37.000	0.000	83	2	MTR	intronic	NA
MB_SHH_T2--2	chr1:237060612	A	NA	88	0	83	32.964	6.047	0	0	0	70	0	MTR	intronic	NA
MB_SHH_T2--3	chr1:237060612	A	G	106	0.009	103	32.981	7.226	1	37.000	0.000	86	1	MTR	intronic	NA
MB_SHH_T2--4	chr1:237060612	A	G	80	0.475	41	31.268	6.848	38	35.658	4.102	30	34	MTR	intronic	NA
MB_SHH_T2--5	chr1:237060612	A	NA	113	0	110	33.536	5.689	0	0	0	92	0	MTR	intronic	NA
MB_SHH_T2--6	chr1:237060612	A	G	68	0.382	40	31.350	8.992	26	36.692	4.646	32	25	MTR	intronic	NA
MB_SHH_T2--GL	chr1:237060612	A	NA	66	0	62	32.935	7.368	0	0	0	52	0	MTR	intronic	NA
MB_SHH_T2--1	chr12:50152600	C	T	74	0.459	40	22.050	9.756	34	32.500	4.794	12	30	TMBIM6	intronic	NA
MB_SHH_T2--2	chr12:50152600	C	T	68	0.368	41	23.171	9.431	25	33.040	3.409	12	23	TMBIM6	intronic	NA
MB_SHH_T2--3	chr12:50152600	C	T	60	0.350	37	22.649	9.855	21	34.476	0.873	11	21	TMBIM6	intronic	NA
MB_SHH_T2--4	chr12:50152600	C	T	45	0.311	31	20.806	10.546	14	31.643	7.313	9	13	TMBIM6	intronic	NA
MB_SHH_T2--5	chr12:50152600	C	T	59	0.322	40	19.600	8.978	19	33.000	6.394	6	18	TMBIM6	intronic	NA
MB_SHH_T2--6	chr12:50152600	C	T	41	0.293	28	19.393	8.243	12	31.333	6.814	4	10	TMBIM6	intronic	NA
MB_SHH_T2--GL	chr12:50152600	C	NA	51	0	49	22.612	9.725	0	0	0	13	0	TMBIM6	intronic	NA
MB_SHH_T2--1	chr12:64017698	G	A	59	0.034	57	35.842	6.213	2	36.000	1.414	50	2	DPY19L2	intronic	NA
MB_SHH_T2--2	chr12:64017698	G	A	64	0.031	62	36.113	5.625	2	37.000	0.000	55	2	DPY19L2	intronic	NA
MB_SHH_T2--3	chr12:64017698	G	A	58	0.052	55	34.945	6.413	3	34.667	5.859	47	2	DPY19L2	intronic	NA
MB_SHH_T2--4	chr12:64017698	G	A	55	0.036	53	37.660	3.589	2	37.000	0.000	51	2	DPY19L2	intronic	NA
MB_SHH_T2--5	chr12:64017698	G	A	46	0.043	44	36.295	5.501	2	37.000	0.000	39	2	DPY19L2	intronic	NA
MB_SHH_T2--6	chr12:64017698	G	A	40	0.200	31	37.581	3.775	8	36.125	2.475	29	8	DPY19L2	intronic	NA
MB_SHH_T2--GL	chr12:64017698	G	NA	79	0	77	37.506	3.497	0	0	0	74	0	DPY19L2	intronic	NA
MB_SHH_T2--1	chr12:97311392	T	A	23	0.087	21	29.476	6.242	2	29.000	2.828	13	1	NEDD1	intronic	NA
MB_SHH_T2--2	chr12:97311392	T	NA	30	0	28	29.750	7.560	0	0	0	19	0	NEDD1	intronic	NA
MB_SHH_T2--3	chr12:97311392	T	A	23	0.130	20	34.100	2.770	3	31.333	2.082	19	2	NEDD1	intronic	NA
MB_SHH_T2--4	chr12:97311392	T	A	24	0.292	16	29.312	5.816	7	28.286	5.823	7	4	NEDD1	intronic	NA
MB_SHH_T2--5	chr12:97311392	T	NA	21	0	21	31.667	5.834	0	0	0	16	0	NEDD1	intronic	NA
MB_SHH_T2--6	chr12:97311392	T	NA	12	0	11	27.545	9.234	0	0	0	6	0	NEDD1	intronic	NA
MB_SHH_T2--GL	chr12:97311392	T	NA	47	0	47	29.915	7.049	0	0	0	28	0	NEDD1	intronic	NA
MB_SHH_T2--1	chr13:21523113	T	NA	49	0	45	35.044	3.451	0	0	0	40	0	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--2	chr13:21523113	T	NA	50	0	50	33.720	4.907	0	0	0	44	0	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--3	chr13:21523113	T	C	51	0.098	46	34.761	4.522	5	33.400	4.722	43	4	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--4	chr13:21523113	T	C	54	0.167	45	34.556	2.685	9	28.333	6.782	43	4	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--5	chr13:21523113	T	C	53	0.151	45	34.111	2.940	8	31.250	6.364	43	6	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--6	chr13:21523113	T	C	37	0.027	36	35.139	3.399	1	35.000	0.000	34	1	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--GL	chr13:21523113	T	NA	39	0	38	35.632	3.552	0	0	0	36	0	LINC00367	ncRNA_intronic	NA
MB_SHH_T2--1	chr13:39618371	T	NA	40	0	39	36.667	6.157	0	0	0	37	0	NHLRC3	intronic	NA
MB_SHH_T2--2	chr13:39618371	T	G	39	0.692	11	38.455	3.357	27	36.000	3.981	11	26	NHLRC3	intronic	NA
MB_SHH_T2--3	chr13:39618371	T	G	31	0.355	20	37.350	3.829	11	35.818	5.492	19	9	NHLRC3	intronic	NA
MB_SHH_T2--4	chr13:39618371	T	NA	37	0	37	35.189	5.317	0	0	0	35	0	NHLRC3	intronic	NA
MB_SHH_T2--5	chr13:39618371	T	G	36	0.417	21	36.952	3.943	15	34.067	4.667	21	13	NHLRC3	intronic	NA
MB_SHH_T2--6	chr13:39618371	T	NA	32	0	31	34.226	6.879	0	0	0	27	0	NHLRC3	intronic	NA
MB_SHH_T2--GL	chr13:39618371	T	NA	33	0	33	35.455	4.684	0	0	0	29	0	NHLRC3	intronic	NA
MB_SHH_T2--1	chr1:40756381	G	A	62	0.032	60	36.350	5.018	2	32.000	1.414	58	2	ZMPSTE24	intronic	NA
MB_SHH_T2--2	chr1:40756381	G	A	45	0.089	41	33.951	6.610	4	35.500	3.000	36	4	ZMPSTE24	intronic	NA
MB_SHH_T2--3	chr1:40756381	G	A	61	0.049	58	36.414	4.600	3	35.000	1.732	54	3	ZMPSTE24	intronic	NA
MB_SHH_T2--4	chr1:40756381	G	A	44	0.045	42	34.976	6.726	2	32.500	2.121	37	2	ZMPSTE24	intronic	NA
MB_SHH_T2--5	chr1:40756381	G	A	55	0.055	52	35.423	6.581	3	35.333	5.132	46	3	ZMPSTE24	intronic	NA
MB_SHH_T2--6	chr1:40756381	G	A	52	0.192	42	36.262	5.446	10	34.200	2.741	39	10	ZMPSTE24	intronic	NA
MB_SHH_T2--GL	chr1:40756381	G	NA	41	0	41	36.732	4.940	0	0	0	39	0	ZMPSTE24	intronic	NA
MB_SHH_T2--1	chr1:40756385	T	G	61	0.033	59	37.085	5.503	2	33.500	4.950	57	2	ZMPSTE24	intronic	NA
MB_SHH_T2--2	chr1:40756385	T	G	43	0.070	40	36.225	4.649	3	37.000	0.000	37	3	ZMPSTE24	intronic	NA
MB_SHH_T2--3	chr1:40756385	T	G	60	0.067	56	36.518	5.689	4	33.250	7.500	51	3	ZMPSTE24	intronic	NA
MB_SHH_T2--4	chr1:40756385	T	G	44	0.045	42	36.262	5.885	2	37.000	0.000	37	2	ZMPSTE24	intronic	NA
MB_SHH_T2--5	chr1:40756385	T	G	54	0.056	51	35.843	5.836	3	37.667	3.055	44	3	ZMPSTE24	intronic	NA
MB_SHH_T2--6	chr1:40756385	T	G	54	0.241	41	35.878	7.730	13	36.692	1.797	36	13	ZMPSTE24	intronic	NA
MB_SHH_T2--GL	chr1:40756385	T	NA	41	0	41	37.098	5.224	0	0	0	38	0	ZMPSTE24	intronic	NA
MB_SHH_T2--1	chr1:41979311	C	NA	55	0	55	36.164	4.298	0	0	0	50	0	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr1:41979311	C	T	70	0.314	48	35.146	5.964	22	36.136	4.109	42	20	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr1:41979311	C	NA	66	0	66	36.818	4.213	0	0	0	63	0	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr1:41979311	C	NA	50	0	50	36.240	4.013	0	0	0	48	0	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr1:41979311	C	NA	61	0	60	36.050	4.304	0	0	0	55	0	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr1:41979311	C	T	62	0.016	61	35.328	4.707	1	35.000	0.000	55	1	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr1:41979311	C	NA	45	0	45	35.578	4.831	0	0	0	39	0	HIVEP3	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr14:23744826	T	NA	56	0	52	37.558	4.604	0	0	0	49	0	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr14:23744826	T	NA	50	0	47	37.872	3.436	0	0	0	46	0	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr14:23744826	T	NA	54	0	49	35.816	5.656	0	0	0	45	0	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr14:23744826	T	A	43	0.233	33	34.879	7.407	10	35.100	4.012	29	10	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr14:23744826	T	NA	39	0	31	36.516	6.292	0	0	0	27	0	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr14:23744826	T	A	43	0.233	33	36.697	5.114	10	35.000	4.110	30	9	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr14:23744826	T	NA	52	0	46	35.109	7.319	0	0	0	37	0	HOMEZ	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr14:60007391	A	NA	61	0	34	32.853	7.110	0	0	0	29	0	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--2	chr14:60007391	A	NA	61	0	36	33.111	7.600	0	0	0	30	0	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--3	chr14:60007391	A	T	43	0.023	42	33.214	7.527	1	33.000	0.000	33	1	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--4	chr14:60007391	A	T	68	0.412	40	33.300	6.107	28	33.321	2.294	31	26	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--5	chr14:60007391	A	NA	37	0	19	35.474	5.358	0	0	0	18	0	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--6	chr14:60007391	A	T	45	0.289	32	30.719	7.454	13	33.769	1.013	19	13	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--GL	chr14:60007391	A	NA	65	0	62	33.194	6.758	0	0	0	49	0	CCDC175(NM_001164399:exon12:c.1355+2T>A)	splicing	NA
MB_SHH_T2--1	chr14:74983492	T	G	217	0.028	116	28.310	8.426	6	30.667	4.131	63	4	LTBP2	intronic	NA
MB_SHH_T2--2	chr14:74983492	T	G	206	0.083	96	28.000	8.268	17	30.882	6.402	51	10	LTBP2	intronic	NA
MB_SHH_T2--3	chr14:74983492	T	G	214	0.009	102	28.951	7.684	2	22.500	10.607	56	1	LTBP2	intronic	NA
MB_SHH_T2--4	chr14:74983492	T	G	190	0.053	115	27.704	7.483	10	32.500	3.837	61	7	LTBP2	intronic	NA
MB_SHH_T2--5	chr14:74983492	T	G	235	0.009	118	26.627	8.487	2	21.000	22.627	55	1	LTBP2	intronic	NA
MB_SHH_T2--6	chr14:74983492	T	G	214	0.061	101	28.218	8.408	13	30.385	8.047	57	11	LTBP2	intronic	NA
MB_SHH_T2--GL	chr14:74983492	T	NA	144	0	63	27.952	9.115	0	0	0	38	0	LTBP2	intronic	NA
MB_SHH_T2--1	chr14:96916232	G	T	58	0.103	52	25.538	8.096	6	36.000	2.098	24	6	AK7	intronic	NA
MB_SHH_T2--2	chr14:96916232	G	T	45	0.022	44	25.932	7.366	1	35.000	0.000	18	1	AK7	intronic	NA
MB_SHH_T2--3	chr14:96916232	G	NA	41	0	40	26.250	7.150	0	0	0	20	0	AK7	intronic	NA
MB_SHH_T2--4	chr14:96916232	G	T	61	0.164	51	25.627	6.687	10	30.900	9.374	19	9	AK7	intronic	NA
MB_SHH_T2--5	chr14:96916232	G	NA	43	0	43	25.070	8.339	0	0	0	19	0	AK7	intronic	NA
MB_SHH_T2--6	chr14:96916232	G	T	35	0.229	27	26.815	5.825	8	33.875	3.137	12	8	AK7	intronic	NA
MB_SHH_T2--GL	chr14:96916232	G	NA	51	0	50	24.740	7.774	0	0	0	21	0	AK7	intronic	NA
MB_SHH_T2--1	chr15:66727689	A	NA	45	0	43	28.372	6.877	0	0	0	25	0	MAP2K1	intronic	NA
MB_SHH_T2--2	chr15:66727689	A	NA	42	0	41	30.268	5.273	0	0	0	28	0	MAP2K1	intronic	NA
MB_SHH_T2--3	chr15:66727689	A	NA	44	0	44	30.114	4.551	0	0	0	32	0	MAP2K1	intronic	NA
MB_SHH_T2--4	chr15:66727689	A	NA	32	0	30	28.400	7.156	0	0	0	19	0	MAP2K1	intronic	NA
MB_SHH_T2--5	chr15:66727689	A	T	42	0.262	31	28.677	6.901	11	33.000	2.049	19	10	MAP2K1	intronic	NA
MB_SHH_T2--6	chr15:66727689	A	NA	28	0	25	28.440	6.279	0	0	0	13	0	MAP2K1	intronic	NA
MB_SHH_T2--GL	chr15:66727689	A	NA	36	0	36	30.528	4.913	0	0	0	24	0	MAP2K1	intronic	NA
MB_SHH_T2--1	chr15:85410490	T	C	85	0.035	82	36.976	5.106	3	37.000	0.000	78	3	ALPK3	intronic	NA
MB_SHH_T2--2	chr15:85410490	T	C	75	0.093	68	35.397	6.160	7	36.143	1.574	62	7	ALPK3	intronic	NA
MB_SHH_T2--3	chr15:85410490	T	C	74	0.081	67	37.194	4.384	6	36.000	2.449	64	6	ALPK3	intronic	NA
MB_SHH_T2--4	chr15:85410490	T	C	60	0.067	56	36.375	4.673	4	36.000	1.155	53	4	ALPK3	intronic	NA
MB_SHH_T2--5	chr15:85410490	T	C	82	0.073	76	36.092	4.747	6	34.833	3.488	69	5	ALPK3	intronic	NA
MB_SHH_T2--6	chr15:85410490	T	C	78	0.205	62	36.790	3.972	16	35.938	1.843	59	16	ALPK3	intronic	NA
MB_SHH_T2--GL	chr15:85410490	T	NA	44	0	44	37.068	3.926	0	0	0	42	0	ALPK3	intronic	NA
MB_SHH_T2--1	chr15:85410491	G	A	87	0.034	83	37.169	5.266	3	37.000	0.000	78	3	ALPK3	intronic	NA
MB_SHH_T2--2	chr15:85410491	G	A	76	0.092	68	35.794	6.226	7	36.429	0.976	63	7	ALPK3	intronic	NA
MB_SHH_T2--3	chr15:85410491	G	A	78	0.090	71	36.394	4.906	7	34.429	6.803	64	6	ALPK3	intronic	NA
MB_SHH_T2--4	chr15:85410491	G	A	64	0.062	60	36.167	4.412	4	35.500	1.915	54	4	ALPK3	intronic	NA
MB_SHH_T2--5	chr15:85410491	G	A	82	0.073	76	35.342	6.730	6	35.667	1.633	67	6	ALPK3	intronic	NA
MB_SHH_T2--6	chr15:85410491	G	A	80	0.200	64	36.094	5.720	16	36.438	0.892	56	16	ALPK3	intronic	NA
MB_SHH_T2--GL	chr15:85410491	G	NA	44	0	44	36.932	5.776	0	0	0	41	0	ALPK3	intronic	NA
MB_SHH_T2--1	chr16:33041063	A	T	83	0.048	79	37.051	4.660	4	27.000	14.720	75	2	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--2	chr16:33041063	A	T	93	0.022	90	37.522	4.325	2	36.000	2.828	86	2	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--3	chr16:33041063	A	T	69	0.043	66	36.394	5.026	3	40.000	1.000	62	3	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--4	chr16:33041063	A	T	62	0.145	51	37.882	3.247	9	38.556	2.877	50	9	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--5	chr16:33041063	A	T	76	0.039	73	37.096	5.006	3	38.667	3.215	68	3	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--6	chr16:33041063	A	T	64	0.047	59	36.373	5.954	3	37.000	6.928	54	2	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--GL	chr16:33041063	A	NA	53	0	53	37.774	2.771	0	0	0	53	0	SLC6A10P(dist=144600),TP53TG3C(dist=164522)	intergenic	NA
MB_SHH_T2--1	chr16:437277	C	NA	77	0	76	34.276	3.232	0	0	0	71	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--2	chr16:437277	C	A	79	0.089	72	32.569	4.753	7	32.286	1.604	63	7	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--3	chr16:437277	C	A	80	0.013	79	32.646	4.288	1	34.000	0.000	67	1	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--4	chr16:437277	C	A	54	0.296	37	33.162	4.531	16	32.125	3.222	34	13	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--5	chr16:437277	C	NA	74	0	73	32.575	6.103	0	0	0	63	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--6	chr16:437277	C	NA	62	0	62	32.661	5.172	0	0	0	56	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--GL	chr16:437277	C	NA	56	0	56	33.054	4.445	0	0	0	48	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--1	chr16:437279	T	C	62	0.016	61	34.869	3.452	1	37.000	0.000	55	1	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--2	chr16:437279	T	C	67	0.060	63	32.683	5.474	4	31.500	1.732	53	4	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--3	chr16:437279	T	C	64	0.016	63	33.397	4.387	1	34.000	0.000	52	1	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--4	chr16:437279	T	C	44	0.295	29	33.897	2.883	13	30.385	7.194	25	12	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--5	chr16:437279	T	NA	65	0	65	32.646	6.994	0	0	0	52	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--6	chr16:437279	T	NA	51	0	50	33.780	3.882	0	0	0	45	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--GL	chr16:437279	T	NA	44	0	44	33.841	4.404	0	0	0	37	0	LOC100134368	ncRNA_intronic	NA
MB_SHH_T2--1	chr16:47732511	G	T	29	0.034	28	34.107	4.939	1	31.000	0.000	25	1	PHKB	intronic	NA
MB_SHH_T2--2	chr16:47732511	G	NA	39	0	38	33.395	6.271	0	0	0	34	0	PHKB	intronic	NA
MB_SHH_T2--3	chr16:47732511	G	NA	39	0	39	33.051	5.605	0	0	0	35	0	PHKB	intronic	NA
MB_SHH_T2--4	chr16:47732511	G	NA	45	0	45	34.400	4.673	0	0	0	42	0	PHKB	intronic	NA
MB_SHH_T2--5	chr16:47732511	G	T	45	0.133	39	31.282	8.924	6	33.000	1.265	31	6	PHKB	intronic	NA
MB_SHH_T2--6	chr16:47732511	G	T	38	0.263	28	31.000	7.832	10	34.000	1.054	24	10	PHKB	intronic	NA
MB_SHH_T2--GL	chr16:47732511	G	NA	66	0	66	32.682	7.919	0	0	0	57	0	PHKB	intronic	NA
MB_SHH_T2--1	chr16:47732512	C	T	32	0.219	24	33.542	5.905	7	28.143	11.006	22	5	PHKB	intronic	NA
MB_SHH_T2--2	chr16:47732512	C	NA	39	0	39	33.205	6.586	0	0	0	35	0	PHKB	intronic	NA
MB_SHH_T2--3	chr16:47732512	C	NA	39	0	39	34.026	4.434	0	0	0	34	0	PHKB	intronic	NA
MB_SHH_T2--4	chr16:47732512	C	NA	45	0	45	33.356	6.213	0	0	0	41	0	PHKB	intronic	NA
MB_SHH_T2--5	chr16:47732512	C	T	51	0.255	38	29.368	9.906	13	31.923	7.053	28	12	PHKB	intronic	NA
MB_SHH_T2--6	chr16:47732512	C	T	45	0.400	27	30.630	7.986	18	33.889	1.410	22	18	PHKB	intronic	NA
MB_SHH_T2--GL	chr16:47732512	C	NA	66	0	66	33.076	7.022	0	0	0	57	0	PHKB	intronic	NA
MB_SHH_T2--1	chr16:67315127	T	NA	213	0	195	29.241	6.859	0	0	0	111	0	PLEKHG4	intronic	NA
MB_SHH_T2--2	chr16:67315127	T	C	152	0.211	119	25.647	8.406	32	27.969	11.128	54	16	PLEKHG4	intronic	NA
MB_SHH_T2--3	chr16:67315127	T	NA	166	0	153	26.882	8.839	0	0	0	71	0	PLEKHG4	intronic	NA
MB_SHH_T2--4	chr16:67315127	T	NA	152	0	140	27.414	8.788	0	0	0	68	0	PLEKHG4	intronic	NA
MB_SHH_T2--5	chr16:67315127	T	NA	165	0	141	27.078	9.077	0	0	0	69	0	PLEKHG4	intronic	NA
MB_SHH_T2--6	chr16:67315127	T	NA	172	0	156	27.474	8.218	0	0	0	78	0	PLEKHG4	intronic	NA
MB_SHH_T2--GL	chr16:67315127	T	NA	115	0	110	28.609	8.580	0	0	0	58	0	PLEKHG4	intronic	NA
MB_SHH_T2--1	chr17:17931884	C	A	122	0.082	111	36.180	6.399	10	31.000	9.189	105	9	ATPAF2	intronic	NA
MB_SHH_T2--2	chr17:17931884	C	A	112	0.107	100	36.370	6.319	12	34.250	0.965	90	12	ATPAF2	intronic	NA
MB_SHH_T2--3	chr17:17931884	C	A	146	0.404	86	34.837	7.417	59	33.627	2.377	78	56	ATPAF2	intronic	NA
MB_SHH_T2--4	chr17:17931884	C	A	133	0.368	82	36.646	4.503	49	32.878	4.986	78	43	ATPAF2	intronic	NA
MB_SHH_T2--5	chr17:17931884	C	NA	86	0	76	36.184	5.689	0	0	0	72	0	ATPAF2	intronic	NA
MB_SHH_T2--6	chr17:17931884	C	A	72	0.153	60	38.350	2.543	11	31.545	8.993	60	10	ATPAF2	intronic	NA
MB_SHH_T2--GL	chr17:17931884	C	NA	83	0	82	36.780	5.461	0	0	0	78	0	ATPAF2	intronic	NA
MB_SHH_T2--1	chr17:74288421	A	NA	458	0	251	35.422	4.894	0	0	0	228	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr17:74288421	A	NA	325	0	173	35.329	4.612	0	0	0	155	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr17:74288421	A	G	312	0.365	188	34.782	6.213	114	34.798	5.572	169	100	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr17:74288421	A	NA	269	0	140	34.493	4.764	0	0	0	123	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr17:74288421	A	G	406	0.310	258	34.671	5.849	126	36.087	5.169	223	119	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr17:74288421	A	G	436	0.005	237	34.291	5.528	2	29.000	9.899	201	1	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr17:74288421	A	NA	152	0	85	35.059	5.373	0	0	0	78	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr17:74288422	T	NA	457	0	247	33.943	5.609	0	0	0	213	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr17:74288422	T	C	325	0.009	170	33.288	6.387	3	20.333	14.640	146	1	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr17:74288422	T	C	310	0.403	185	33.314	6.832	125	34.120	6.061	152	109	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr17:74288422	T	NA	268	0	139	33.259	5.513	0	0	0	117	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr17:74288422	T	C	407	0.369	257	32.696	7.469	150	34.953	5.595	204	129	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr17:74288422	T	C	435	0.005	236	32.254	6.933	2	21.000	18.385	189	1	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr17:74288422	T	NA	152	0	85	33.671	6.851	0	0	0	72	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr17:7755766	T	G	69	0.638	21	33.619	4.695	44	33.977	3.701	17	41	KDM6B	intronic	NA
MB_SHH_T2--2	chr17:7755766	T	NA	155	0	119	32.303	7.404	0	0	0	95	0	KDM6B	intronic	NA
MB_SHH_T2--3	chr17:7755766	T	G	142	0.007	141	31.645	7.213	1	34.000	0.000	106	1	KDM6B	intronic	NA
MB_SHH_T2--4	chr17:7755766	T	G	107	0.121	94	31.660	5.981	13	33.462	5.190	69	11	KDM6B	intronic	NA
MB_SHH_T2--5	chr17:7755766	T	NA	198	0	162	32.346	6.969	0	0	0	125	0	KDM6B	intronic	NA
MB_SHH_T2--6	chr17:7755766	T	NA	209	0	155	32.206	7.396	0	0	0	121	0	KDM6B	intronic	NA
MB_SHH_T2--GL	chr17:7755766	T	NA	120	0	102	33.078	6.772	0	0	0	83	0	KDM6B	intronic	NA
MB_SHH_T2--1	chr17:7756032	A	C	143	0.021	9	30.000	12.540	3	32.000	4.359	6	2	KDM6B	intronic	NA
MB_SHH_T2--2	chr17:7756032	A	NA	209	0	114	35.149	6.577	0	0	0	99	0	KDM6B	intronic	NA
MB_SHH_T2--3	chr17:7756032	A	NA	116	0	109	36.330	4.855	0	0	0	104	0	KDM6B	intronic	NA
MB_SHH_T2--4	chr17:7756032	A	NA	132	0	67	34.985	5.674	0	0	0	60	0	KDM6B	intronic	NA
MB_SHH_T2--5	chr17:7756032	A	NA	225	0	122	35.943	4.980	0	0	0	112	0	KDM6B	intronic	NA
MB_SHH_T2--6	chr17:7756032	A	NA	234	0	113	36.708	4.183	0	0	0	106	0	KDM6B	intronic	NA
MB_SHH_T2--GL	chr17:7756032	A	NA	139	0	66	36.636	5.386	0	0	0	62	0	KDM6B	intronic	NA
MB_SHH_T2--1	chr17:7990565	C	G	74	0.108	19	33.842	6.012	8	30.125	2.475	17	6	ALOX12B	intronic	NA
MB_SHH_T2--2	chr17:7990565	C	G	80	0.075	73	34.986	5.221	6	27.500	10.445	64	4	ALOX12B	intronic	NA
MB_SHH_T2--3	chr17:7990565	C	NA	50	0	50	33.860	5.345	0	0	0	42	0	ALOX12B	intronic	NA
MB_SHH_T2--4	chr17:7990565	C	G	51	0.039	48	34.812	5.139	2	33.500	9.192	43	1	ALOX12B	intronic	NA
MB_SHH_T2--5	chr17:7990565	C	G	91	0.110	81	34.383	6.752	10	31.500	5.191	73	7	ALOX12B	intronic	NA
MB_SHH_T2--6	chr17:7990565	C	G	93	0.086	84	34.310	6.028	8	29.750	13.145	73	6	ALOX12B	intronic	NA
MB_SHH_T2--GL	chr17:7990565	C	NA	45	0	44	34.091	6.213	0	0	0	42	0	ALOX12B	intronic	NA
MB_SHH_T2--1	chr18:55335786	T	NA	38	0	38	36.605	4.227	0	0	0	36	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--2	chr18:55335786	T	NA	32	0	32	37.906	4.059	0	0	0	29	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--3	chr18:55335786	T	NA	27	0	27	38.370	2.989	0	0	0	27	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--4	chr18:55335786	T	A	48	0.333	32	37.250	4.819	16	31.750	6.846	30	15	RP11-35G9.3	UTR3	NA
MB_SHH_T2--5	chr18:55335786	T	NA	23	0	22	36.409	4.250	0	0	0	21	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--6	chr18:55335786	T	NA	23	0	23	36.304	4.838	0	0	0	21	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--GL	chr18:55335786	T	NA	33	0	33	36.485	4.777	0	0	0	31	0	RP11-35G9.3	UTR3	NA
MB_SHH_T2--1	chr1:87045902	A	NA	88	0	60	32.400	7.076	0	0	0	46	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--2	chr1:87045902	A	T	92	0.163	64	32.000	5.201	15	32.733	5.775	46	13	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--3	chr1:87045902	A	NA	96	0	66	30.394	7.547	0	0	0	43	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--4	chr1:87045902	A	NA	121	0	90	32.100	7.364	0	0	0	64	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--5	chr1:87045902	A	NA	76	0	53	31.736	7.803	0	0	0	41	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--6	chr1:87045902	A	NA	72	0	47	29.213	8.030	0	0	0	30	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--GL	chr1:87045902	A	NA	168	0	104	31.635	7.349	0	0	0	75	0	CLCA4	exonic	synonymous_SNV
MB_SHH_T2--1	chr1:93691881	C	T	25	0.160	21	25.524	8.937	4	33.500	1.000	8	4	CCDC18	intronic	NA
MB_SHH_T2--2	chr1:93691881	C	NA	24	0	23	23.000	9.525	0	0	0	5	0	CCDC18	intronic	NA
MB_SHH_T2--3	chr1:93691881	C	NA	29	0	28	25.964	7.426	0	0	0	8	0	CCDC18	intronic	NA
MB_SHH_T2--4	chr1:93691881	C	T	34	0.206	27	23.852	7.059	7	33.571	1.512	6	7	CCDC18	intronic	NA
MB_SHH_T2--5	chr1:93691881	C	T	27	0.259	20	25.700	8.688	7	33.857	1.574	9	7	CCDC18	intronic	NA
MB_SHH_T2--6	chr1:93691881	C	T	23	0.304	16	25.375	10.701	7	34.429	0.976	6	7	CCDC18	intronic	NA
MB_SHH_T2--GL	chr1:93691881	C	NA	46	0	43	24.442	11.068	0	0	0	16	0	CCDC18	intronic	NA
MB_SHH_T2--1	chr19:55044236	C	T	91	0.308	61	26.951	8.644	28	37.000	3.621	32	25	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--2	chr19:55044236	C	T	80	0.025	77	31.273	7.779	2	28.500	2.121	53	1	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--3	chr19:55044236	C	NA	60	0	57	31.807	8.357	0	0	0	42	0	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--4	chr19:55044236	C	NA	73	0	70	31.700	8.254	0	0	0	49	0	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--5	chr19:55044236	C	NA	87	0	86	31.326	8.640	0	0	0	60	0	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--6	chr19:55044236	C	NA	61	0	60	31.633	7.591	0	0	0	43	0	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--GL	chr19:55044236	C	NA	107	0	101	31.535	8.036	0	0	0	70	0	KIR3DX1	ncRNA_intronic	NA
MB_SHH_T2--1	chr20:18466510	T	C	42	0.119	37	35.108	4.611	5	36.600	0.894	34	5	RBBP9	downstream	NA
MB_SHH_T2--2	chr20:18466510	T	C	65	0.077	60	35.450	4.436	5	37.000	0.000	55	5	RBBP9	downstream	NA
MB_SHH_T2--3	chr20:18466510	T	C	60	0.083	55	35.073	4.529	5	35.600	3.130	51	5	RBBP9	downstream	NA
MB_SHH_T2--4	chr20:18466510	T	C	42	0.024	41	33.341	6.579	1	37.000	0.000	34	1	RBBP9	downstream	NA
MB_SHH_T2--5	chr20:18466510	T	C	29	0.069	27	34.222	6.841	2	37.000	0.000	25	2	RBBP9	downstream	NA
MB_SHH_T2--6	chr20:18466510	T	C	36	0.194	29	33.931	4.174	7	36.429	0.976	25	7	RBBP9	downstream	NA
MB_SHH_T2--GL	chr20:18466510	T	NA	50	0	50	35.160	5.254	0	0	0	45	0	RBBP9	downstream	NA
MB_SHH_T2--1	chr20:18466511	G	A	42	0.119	37	35.027	4.924	5	37.000	0.000	34	5	RBBP9	downstream	NA
MB_SHH_T2--2	chr20:18466511	G	A	66	0.076	61	36.131	3.442	5	36.600	0.894	60	5	RBBP9	downstream	NA
MB_SHH_T2--3	chr20:18466511	G	A	60	0.067	56	35.339	5.313	4	36.500	1.000	52	4	RBBP9	downstream	NA
MB_SHH_T2--4	chr20:18466511	G	A	42	0.024	41	34.244	5.490	1	37.000	0.000	35	1	RBBP9	downstream	NA
MB_SHH_T2--5	chr20:18466511	G	A	29	0.103	26	35.500	3.922	3	37.000	0.000	23	3	RBBP9	downstream	NA
MB_SHH_T2--6	chr20:18466511	G	A	37	0.216	29	34.690	3.285	8	34.625	6.323	28	7	RBBP9	downstream	NA
MB_SHH_T2--GL	chr20:18466511	G	NA	51	0	51	34.588	6.014	0	0	0	44	0	RBBP9	downstream	NA
MB_SHH_T2--1	chr21:10715055	T	NA	16	0	16	37.375	4.515	0	0	0	14	0	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--2	chr21:10715055	T	C	21	0.048	20	35.550	4.322	1	40.000	0.000	17	1	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--3	chr21:10715055	T	C	26	0.038	25	36.520	6.875	1	39.000	0.000	23	1	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--4	chr21:10715055	T	NA	20	0	20	37.500	4.123	0	0	0	19	0	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--5	chr21:10715055	T	C	15	0.067	14	37.786	3.309	1	38.000	0.000	13	1	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--6	chr21:10715055	T	C	26	0.154	22	36.000	6.385	4	38.500	2.380	21	4	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--GL	chr21:10715055	T	NA	38	0	37	37.649	4.036	0	0	0	35	0	TEKT4P2(dist=746462),TPTE(dist=191688)	intergenic	NA
MB_SHH_T2--1	chr21:10733872	T	C	30	0.100	27	35.630	4.271	3	33.667	8.083	25	2	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--2	chr21:10733872	T	C	25	0.080	23	33.174	7.171	2	39.500	0.707	18	2	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--3	chr21:10733872	T	NA	26	0	26	36.385	4.177	0	0	0	24	0	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--4	chr21:10733872	T	NA	30	0	30	38.067	2.852	0	0	0	30	0	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--5	chr21:10733872	T	NA	10	0	10	35.700	5.736	0	0	0	8	0	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--6	chr21:10733872	T	C	17	0.294	12	33.333	9.403	5	38.000	2.828	10	5	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--GL	chr21:10733872	T	NA	38	0	38	36.000	5.995	0	0	0	35	0	TEKT4P2(dist=765279),TPTE(dist=172871)	intergenic	NA
MB_SHH_T2--1	chr21:11043242	A	C	37	0.108	33	35.697	5.133	4	35.750	2.500	30	4	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--2	chr21:11043242	A	C	37	0.162	31	34.323	5.147	6	32.167	9.827	28	4	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--3	chr21:11043242	A	C	39	0.179	32	34.844	4.615	7	32.143	9.974	28	6	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--4	chr21:11043242	A	C	26	0.192	21	36.000	4.733	5	35.000	3.162	19	5	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--5	chr21:11043242	A	C	24	0.167	20	35.650	3.281	4	37.750	3.862	19	4	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--6	chr21:11043242	A	C	25	0.040	24	35.708	5.328	1	38.000	0.000	23	1	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--GL	chr21:11043242	A	NA	39	0	39	35.923	4.842	0	0	0	34	0	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--1	chr21:11050038	A	C	33	0.091	30	38.000	3.974	3	37.333	4.041	28	3	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--2	chr21:11050038	A	C	26	0.077	24	37.958	2.956	2	38.000	1.414	24	2	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--3	chr21:11050038	A	C	25	0.160	21	37.714	3.481	4	37.250	4.787	20	4	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--4	chr21:11050038	A	C	25	0.040	24	36.750	3.904	1	31.000	0.000	23	1	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--5	chr21:11050038	A	C	12	0.083	11	37.364	4.056	1	39.000	0.000	10	1	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--6	chr21:11050038	A	NA	15	0	15	36.867	5.222	0	0	0	14	0	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--GL	chr21:11050038	A	NA	37	0	37	37.514	3.920	0	0	0	36	0	BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--1	chr21:11065906	T	C	30	0.100	27	37.741	3.241	3	39.333	2.887	26	3	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--2	chr21:11065906	T	C	31	0.065	29	36.483	4.239	2	30.000	8.485	26	1	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--3	chr21:11065906	T	C	34	0.059	32	37.781	6.009	2	36.500	3.536	30	2	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--4	chr21:11065906	T	C	30	0.133	26	34.962	8.725	4	39.250	2.363	22	4	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--5	chr21:11065906	T	C	23	0.043	22	37.091	4.046	1	39.000	0.000	20	1	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--6	chr21:11065906	T	NA	23	0	23	35.957	6.421	0	0	0	21	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--GL	chr21:11065906	T	NA	39	0	39	36.051	5.226	0	0	0	35	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--1	chr21:11089422	G	A	63	0.079	58	34.828	7.037	5	34.400	3.578	52	4	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--2	chr21:11089422	G	A	45	0.067	42	35.667	4.932	3	35.667	2.082	37	3	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--3	chr21:11089422	G	A	44	0.091	40	36.750	4.396	4	37.000	3.464	38	4	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--4	chr21:11089422	G	A	61	0.016	60	35.850	4.747	1	33.000	0.000	55	1	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--5	chr21:11089422	G	A	35	0.114	31	34.355	6.484	4	34.750	3.304	28	4	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--6	chr21:11089422	G	A	50	0.160	42	36.000	4.356	8	35.375	2.326	38	8	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--GL	chr21:11089422	G	NA	41	0	40	34.975	7.166	0	0	0	37	0	BAGE,BAGE2,BAGE3,BAGE4,BAGE5	intronic	NA
MB_SHH_T2--1	chr21:11120016	A	NA	29	0	29	35.828	4.683	0	0	0	27	0	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--2	chr21:11120016	A	NA	25	0	25	36.520	3.513	0	0	0	24	0	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--3	chr21:11120016	A	G	24	0.042	23	37.870	2.833	1	38.000	0.000	23	1	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--4	chr21:11120016	A	G	12	0.333	8	38.500	1.852	4	36.500	4.435	8	4	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--5	chr21:11120016	A	G	16	0.062	15	37.867	2.924	1	39.000	0.000	15	1	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--6	chr21:11120016	A	G	17	0.176	14	37.429	2.793	3	37.667	3.055	14	3	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--GL	chr21:11120016	A	NA	34	0	34	37.000	3.375	0	0	0	33	0	BAGE(dist=21079),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--1	chr2:17952668	C	A	17	0.176	14	35.500	6.490	3	37.000	4.359	12	3	GEN1	intronic	NA
MB_SHH_T2--2	chr2:17952668	C	NA	38	0	38	36.605	5.435	0	0	0	36	0	GEN1	intronic	NA
MB_SHH_T2--3	chr2:17952668	C	NA	36	0	36	36.333	4.309	0	0	0	33	0	GEN1	intronic	NA
MB_SHH_T2--4	chr2:17952668	C	NA	24	0	24	37.083	3.611	0	0	0	24	0	GEN1	intronic	NA
MB_SHH_T2--5	chr2:17952668	C	NA	26	0	26	37.962	3.079	0	0	0	25	0	GEN1	intronic	NA
MB_SHH_T2--6	chr2:17952668	C	NA	29	0	29	37.690	2.727	0	0	0	29	0	GEN1	intronic	NA
MB_SHH_T2--GL	chr2:17952668	C	NA	40	0	39	37.410	5.581	0	0	0	36	0	GEN1	intronic	NA
MB_SHH_T2--1	chr2:179548954	T	A	39	0.103	35	29.486	9.784	4	33.500	5.745	25	3	TTN	intronic	NA
MB_SHH_T2--2	chr2:179548954	T	NA	45	0	44	32.591	5.646	0	0	0	33	0	TTN	intronic	NA
MB_SHH_T2--3	chr2:179548954	T	A	41	0.024	40	31.525	6.594	1	38.000	0.000	30	1	TTN	intronic	NA
MB_SHH_T2--4	chr2:179548954	T	NA	35	0	35	30.629	10.452	0	0	0	26	0	TTN	intronic	NA
MB_SHH_T2--5	chr2:179548954	T	NA	38	0	38	33.368	7.394	0	0	0	33	0	TTN	intronic	NA
MB_SHH_T2--6	chr2:179548954	T	A	13	0.231	10	33.200	9.864	3	35.000	3.606	9	3	TTN	intronic	NA
MB_SHH_T2--GL	chr2:179548954	T	NA	44	0	44	34.114	5.554	0	0	0	39	0	TTN	intronic	NA
MB_SHH_T2--1	chr2:202531200	C	NA	30	0	29	35.310	8.054	0	0	0	25	0	MPP4	intronic	NA
MB_SHH_T2--2	chr2:202531200	C	T	31	0.032	30	35.933	6.628	1	35.000	0.000	27	1	MPP4	intronic	NA
MB_SHH_T2--3	chr2:202531200	C	NA	26	0	25	37.200	3.055	0	0	0	25	0	MPP4	intronic	NA
MB_SHH_T2--4	chr2:202531200	C	T	36	0.083	33	37.485	3.232	3	37.000	0.000	32	3	MPP4	intronic	NA
MB_SHH_T2--5	chr2:202531200	C	T	26	0.077	24	35.625	7.728	2	38.500	2.121	22	2	MPP4	intronic	NA
MB_SHH_T2--6	chr2:202531200	C	T	24	0.208	19	38.684	2.562	5	36.600	0.894	19	5	MPP4	intronic	NA
MB_SHH_T2--GL	chr2:202531200	C	NA	39	0	38	34.526	7.344	0	0	0	34	0	MPP4	intronic	NA
MB_SHH_T2--1	chr2:204637729	A	NA	75	0	75	36.213	5.438	0	0	0	70	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--2	chr2:204637729	A	NA	108	0	105	36.200	5.889	0	0	0	97	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--3	chr2:204637729	A	NA	90	0	90	35.478	5.675	0	0	0	81	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--4	chr2:204637729	A	NA	99	0	99	36.505	3.955	0	0	0	93	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--5	chr2:204637729	A	T	74	0.189	59	36.983	3.617	14	38.286	2.585	56	14	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--6	chr2:204637729	A	NA	53	0	53	36.189	6.558	0	0	0	47	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--GL	chr2:204637729	A	NA	97	0	95	37.284	3.924	0	0	0	90	0	CD28(dist=34093),CTLA4(dist=94782)	intergenic	NA
MB_SHH_T2--1	chr22:18077387	A	NA	57	0	33	35.909	3.329	0	0	0	32	0	ATP6V1E1	intronic	NA
MB_SHH_T2--2	chr22:18077387	A	NA	61	0	29	35.172	3.901	0	0	0	26	0	ATP6V1E1	intronic	NA
MB_SHH_T2--3	chr22:18077387	A	C	42	0.119	19	33.737	4.370	5	33.400	1.673	16	5	ATP6V1E1	intronic	NA
MB_SHH_T2--4	chr22:18077387	A	NA	46	0	21	34.857	6.930	0	0	0	20	0	ATP6V1E1	intronic	NA
MB_SHH_T2--5	chr22:18077387	A	NA	27	0	13	33.769	3.632	0	0	0	12	0	ATP6V1E1	intronic	NA
MB_SHH_T2--6	chr22:18077387	A	NA	42	0	20	36.050	3.187	0	0	0	20	0	ATP6V1E1	intronic	NA
MB_SHH_T2--GL	chr22:18077387	A	NA	56	0	36	35.722	3.150	0	0	0	35	0	ATP6V1E1	intronic	NA
MB_SHH_T2--1	chr22:22318672	T	C	90	0.489	46	33.630	5.946	44	34.523	5.329	41	40	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr22:22318672	T	C	90	0.511	44	33.205	6.565	46	35.630	3.648	38	45	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr22:22318672	T	C	68	0.412	40	34.625	3.868	28	33.250	5.303	37	24	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr22:22318672	T	C	70	0.486	35	34.457	4.591	34	33.588	4.580	32	31	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr22:22318672	T	C	84	0.560	37	35.270	3.237	47	35.106	3.370	36	45	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr22:22318672	T	C	79	0.443	44	34.841	3.034	35	34.457	4.421	43	30	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr22:22318672	T	NA	70	0	70	34.300	3.461	0	0	0	65	0	TOP3B	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr22:29117550	A	NA	62	0	61	36.967	4.827	0	0	0	59	0	CHEK2	UTR5	NA
MB_SHH_T2--2	chr22:29117550	A	C	50	0.100	45	36.200	3.223	5	36.600	0.894	44	5	CHEK2	UTR5	NA
MB_SHH_T2--3	chr22:29117550	A	C	58	0.052	55	37.182	3.244	3	36.333	1.155	52	3	CHEK2	UTR5	NA
MB_SHH_T2--4	chr22:29117550	A	C	41	0.024	40	36.625	3.628	1	37.000	0.000	39	1	CHEK2	UTR5	NA
MB_SHH_T2--5	chr22:29117550	A	NA	46	0	46	36.717	4.220	0	0	0	43	0	CHEK2	UTR5	NA
MB_SHH_T2--6	chr22:29117550	A	C	43	0.163	36	37.639	3.063	7	37.000	0.000	36	7	CHEK2	UTR5	NA
MB_SHH_T2--GL	chr22:29117550	A	NA	55	0	55	36.436	4.826	0	0	0	50	0	CHEK2	UTR5	NA
MB_SHH_T2--1	chr22:29117553	A	G	63	0.016	62	37.129	3.400	1	39.000	0.000	60	1	CHEK2	UTR5	NA
MB_SHH_T2--2	chr22:29117553	A	G	52	0.077	48	35.146	5.219	4	38.750	0.500	44	4	CHEK2	UTR5	NA
MB_SHH_T2--3	chr22:29117553	A	G	58	0.069	54	36.685	4.365	4	37.500	1.915	51	4	CHEK2	UTR5	NA
MB_SHH_T2--4	chr22:29117553	A	G	43	0.023	42	34.905	5.934	1	39.000	0.000	36	1	CHEK2	UTR5	NA
MB_SHH_T2--5	chr22:29117553	A	NA	46	0	46	35.739	6.020	0	0	0	41	0	CHEK2	UTR5	NA
MB_SHH_T2--6	chr22:29117553	A	G	46	0.174	38	36.132	6.381	8	36.875	2.232	35	8	CHEK2	UTR5	NA
MB_SHH_T2--GL	chr22:29117553	A	NA	57	0	57	35.491	5.047	0	0	0	51	0	CHEK2	UTR5	NA
MB_SHH_T2--1	chr2:231861071	T	C	94	0.404	56	33.875	4.290	38	34.368	5.697	47	35	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--2	chr2:231861071	T	C	78	0.526	37	33.432	5.025	41	33.585	5.670	32	34	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--3	chr2:231861071	T	NA	94	0	94	32.628	7.086	0	0	0	71	0	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--4	chr2:231861071	T	NA	95	0	93	33.742	5.842	0	0	0	78	0	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--5	chr2:231861071	T	C	66	0.364	42	33.690	6.296	24	32.708	5.953	38	20	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--6	chr2:231861071	T	NA	118	0	117	33.538	5.943	0	0	0	96	0	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--GL	chr2:231861071	T	NA	81	0	81	33.765	6.106	0	0	0	70	0	SPATA3	exonic	synonymous_SNV
MB_SHH_T2--1	chr2:43937723	C	T	89	0.270	65	34.338	8.458	24	32.500	6.248	55	21	PLEKHH2	intronic	NA
MB_SHH_T2--2	chr2:43937723	C	T	83	0.253	62	35.645	3.859	21	33.667	1.592	59	21	PLEKHH2	intronic	NA
MB_SHH_T2--3	chr2:43937723	C	NA	79	0	54	34.278	7.930	0	0	0	49	0	PLEKHH2	intronic	NA
MB_SHH_T2--4	chr2:43937723	C	T	93	0.075	85	35.447	6.737	7	32.714	2.690	75	6	PLEKHH2	intronic	NA
MB_SHH_T2--5	chr2:43937723	C	T	67	0.179	55	32.745	8.435	12	33.000	1.477	43	12	PLEKHH2	intronic	NA
MB_SHH_T2--6	chr2:43937723	C	NA	63	0	44	34.773	6.573	0	0	0	37	0	PLEKHH2	intronic	NA
MB_SHH_T2--GL	chr2:43937723	C	NA	100	0	78	35.564	5.390	0	0	0	71	0	PLEKHH2	intronic	NA
MB_SHH_T2--1	chr3:123650453	A	C	35	0.029	34	33.706	5.896	1	33.000	0.000	30	1	CCDC14	intronic	NA
MB_SHH_T2--2	chr3:123650453	A	C	32	0.062	30	33.933	3.084	2	32.500	3.536	28	2	CCDC14	intronic	NA
MB_SHH_T2--3	chr3:123650453	A	NA	29	0	29	34.483	2.984	0	0	0	27	0	CCDC14	intronic	NA
MB_SHH_T2--4	chr3:123650453	A	C	35	0.200	28	32.714	5.785	7	30.714	7.064	25	5	CCDC14	intronic	NA
MB_SHH_T2--5	chr3:123650453	A	C	28	0.107	25	34.480	4.753	3	32.333	1.155	22	3	CCDC14	intronic	NA
MB_SHH_T2--6	chr3:123650453	A	C	16	0.062	15	33.733	3.863	1	31.000	0.000	13	1	CCDC14	intronic	NA
MB_SHH_T2--GL	chr3:123650453	A	NA	34	0	34	33.529	4.554	0	0	0	28	0	CCDC14	intronic	NA
MB_SHH_T2--1	chr3:186435608	T	C	74	0.014	72	32.722	5.366	1	33.000	0.000	59	1	KNG1	intronic	NA
MB_SHH_T2--2	chr3:186435608	T	C	82	0.220	59	32.949	4.412	18	31.222	1.833	50	16	KNG1	intronic	NA
MB_SHH_T2--3	chr3:186435608	T	C	77	0.026	74	31.649	6.418	2	32.000	1.414	57	2	KNG1	intronic	NA
MB_SHH_T2--4	chr3:186435608	T	C	56	0.018	55	31.364	6.473	1	31.000	0.000	43	1	KNG1	intronic	NA
MB_SHH_T2--5	chr3:186435608	T	NA	71	0	69	31.797	6.833	0	0	0	54	0	KNG1	intronic	NA
MB_SHH_T2--6	chr3:186435608	T	NA	65	0	65	32.215	5.891	0	0	0	51	0	KNG1	intronic	NA
MB_SHH_T2--GL	chr3:186435608	T	NA	51	0	51	32.961	4.108	0	0	0	42	0	KNG1	intronic	NA
MB_SHH_T2--1	chr3:69053512	C	A	15	0.200	12	36.083	6.895	3	35.000	1.000	10	3	EOGT	intronic	NA
MB_SHH_T2--2	chr3:69053512	C	NA	26	0	26	35.615	6.640	0	0	0	24	0	EOGT	intronic	NA
MB_SHH_T2--3	chr3:69053512	C	NA	24	0	24	36.542	4.303	0	0	0	22	0	EOGT	intronic	NA
MB_SHH_T2--4	chr3:69053512	C	NA	19	0	19	33.737	6.740	0	0	0	16	0	EOGT	intronic	NA
MB_SHH_T2--5	chr3:69053512	C	NA	16	0	16	36.375	5.772	0	0	0	15	0	EOGT	intronic	NA
MB_SHH_T2--6	chr3:69053512	C	NA	17	0	17	35.647	4.898	0	0	0	16	0	EOGT	intronic	NA
MB_SHH_T2--GL	chr3:69053512	C	NA	35	0	35	34.429	6.045	0	0	0	32	0	EOGT	intronic	NA
MB_SHH_T2--1	chr4:145059406	C	NA	52	0	52	36.442	5.727	0	0	0	49	0	GYPA	intronic	NA
MB_SHH_T2--2	chr4:145059406	C	NA	49	0	49	36.163	6.959	0	0	0	46	0	GYPA	intronic	NA
MB_SHH_T2--3	chr4:145059406	C	A	77	0.013	76	37.197	3.720	1	38.000	0.000	72	1	GYPA	intronic	NA
MB_SHH_T2--4	chr4:145059406	C	NA	51	0	51	37.235	3.519	0	0	0	49	0	GYPA	intronic	NA
MB_SHH_T2--5	chr4:145059406	C	A	29	0.138	25	37.400	4.153	4	38.250	1.258	23	4	GYPA	intronic	NA
MB_SHH_T2--6	chr4:145059406	C	A	49	0.041	47	37.149	4.118	2	37.500	4.950	45	2	GYPA	intronic	NA
MB_SHH_T2--GL	chr4:145059406	C	NA	95	0	95	36.789	4.016	0	0	0	89	0	GYPA	intronic	NA
MB_SHH_T2--1	chr4:152200991	G	A	69	0.058	65	36.092	5.110	4	35.500	2.646	62	4	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--2	chr4:152200991	G	NA	47	0	47	36.191	5.261	0	0	0	44	0	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--3	chr4:152200991	G	A	54	0.056	51	35.549	5.088	3	37.000	2.000	49	3	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--4	chr4:152200991	G	A	55	0.055	52	36.558	3.632	3	38.333	1.155	51	3	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--5	chr4:152200991	G	A	63	0.048	60	36.317	4.579	3	38.333	1.155	56	3	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--6	chr4:152200991	G	A	79	0.215	62	35.742	7.161	17	34.529	4.571	57	16	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--GL	chr4:152200991	G	NA	49	0	49	36.776	4.857	0	0	0	43	0	PRSS48	exonic	synonymous_SNV
MB_SHH_T2--1	chr4:39083763	C	NA	19	0	19	37.211	5.593	0	0	0	18	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr4:39083763	C	NA	21	0	21	37.714	2.952	0	0	0	21	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr4:39083763	C	NA	23	0	23	37.783	2.467	0	0	0	23	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr4:39083763	C	NA	24	0	24	37.583	3.078	0	0	0	23	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr4:39083763	C	A	12	0.250	9	35.556	4.876	3	34.333	2.082	8	3	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr4:39083763	C	NA	29	0	29	37.345	3.330	0	0	0	28	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr4:39083763	C	NA	37	0	37	37.432	3.460	0	0	0	35	0	KLHL5	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr4:79781185	C	NA	24	0	24	28.917	11.799	0	0	0	12	0	BMP2K	intronic	NA
MB_SHH_T2--2	chr4:79781185	C	T	17	0.118	15	27.933	10.951	2	20.500	20.506	7	1	BMP2K	intronic	NA
MB_SHH_T2--3	chr4:79781185	C	T	29	0.241	22	29.227	10.318	7	25.429	11.178	13	4	BMP2K	intronic	NA
MB_SHH_T2--4	chr4:79781185	C	NA	37	0	35	30.714	11.200	0	0	0	24	0	BMP2K	intronic	NA
MB_SHH_T2--5	chr4:79781185	C	T	30	0.167	25	31.440	8.842	5	21.600	16.165	17	2	BMP2K	intronic	NA
MB_SHH_T2--6	chr4:79781185	C	NA	17	0	15	25.600	11.587	0	0	0	7	0	BMP2K	intronic	NA
MB_SHH_T2--GL	chr4:79781185	C	NA	51	0	47	32.043	10.181	0	0	0	33	0	BMP2K	intronic	NA
MB_SHH_T2--1	chr5:115168268	C	T	52	0.288	34	38.706	2.182	15	38.867	2.475	34	15	ATG12	intronic	NA
MB_SHH_T2--2	chr5:115168268	C	T	69	0.014	37	38.243	3.295	1	37.000	0.000	37	1	ATG12	intronic	NA
MB_SHH_T2--3	chr5:115168268	C	T	72	0.347	44	37.295	6.037	25	37.920	6.582	41	24	ATG12	intronic	NA
MB_SHH_T2--4	chr5:115168268	C	T	79	0.418	42	36.500	4.860	33	36.212	9.120	37	29	ATG12	intronic	NA
MB_SHH_T2--5	chr5:115168268	C	T	44	0.455	22	35.364	10.472	20	37.950	4.211	19	19	ATG12	intronic	NA
MB_SHH_T2--6	chr5:115168268	C	T	48	0.500	22	37.227	4.514	24	37.500	4.394	21	23	ATG12	intronic	NA
MB_SHH_T2--GL	chr5:115168268	C	NA	103	0	54	38.667	2.754	0	0	0	53	0	ATG12	intronic	NA
MB_SHH_T2--1	chr5:13886244	C	A	73	0.178	60	37.850	5.854	13	33.000	3.266	57	12	DNAH5	intronic	NA
MB_SHH_T2--2	chr5:13886244	C	NA	69	0	57	37.456	5.050	0	0	0	56	0	DNAH5	intronic	NA
MB_SHH_T2--3	chr5:13886244	C	A	76	0.355	47	37.468	4.288	27	33.481	2.737	42	26	DNAH5	intronic	NA
MB_SHH_T2--4	chr5:13886244	C	NA	74	0	62	37.210	5.729	0	0	0	57	0	DNAH5	intronic	NA
MB_SHH_T2--5	chr5:13886244	C	A	57	0.175	47	37.319	5.549	10	33.200	1.989	46	10	DNAH5	intronic	NA
MB_SHH_T2--6	chr5:13886244	C	A	45	0.156	38	37.737	3.832	7	33.571	0.976	36	7	DNAH5	intronic	NA
MB_SHH_T2--GL	chr5:13886244	C	NA	60	0	46	37.022	4.800	0	0	0	43	0	DNAH5	intronic	NA
MB_SHH_T2--1	chr5:140027612	T	G	118	0.212	93	33.022	6.420	25	30.920	10.360	75	20	IK	intronic	NA
MB_SHH_T2--2	chr5:140027612	T	G	71	0.042	68	34.603	5.491	3	39.333	1.155	63	3	IK	intronic	NA
MB_SHH_T2--3	chr5:140027612	T	G	84	0.036	80	33.775	6.547	3	26.000	15.588	64	2	IK	intronic	NA
MB_SHH_T2--4	chr5:140027612	T	NA	63	0	62	33.081	8.076	0	0	0	49	0	IK	intronic	NA
MB_SHH_T2--5	chr5:140027612	T	G	96	0.021	94	33.117	6.299	2	23.500	21.920	76	1	IK	intronic	NA
MB_SHH_T2--6	chr5:140027612	T	G	104	0.019	100	33.760	6.293	2	34.000	9.899	83	1	IK	intronic	NA
MB_SHH_T2--GL	chr5:140027612	T	NA	43	0	43	34.605	5.674	0	0	0	35	0	IK	intronic	NA
MB_SHH_T2--1	chr5:145377383	C	NA	90	0	90	36.078	4.376	0	0	0	82	0	SH3RF2	intronic	NA
MB_SHH_T2--2	chr5:145377383	C	T	103	0.204	82	36.402	4.076	21	35.952	4.706	77	18	SH3RF2	intronic	NA
MB_SHH_T2--3	chr5:145377383	C	NA	115	0	115	36.061	5.783	0	0	0	104	0	SH3RF2	intronic	NA
MB_SHH_T2--4	chr5:145377383	C	NA	105	0	104	36.096	4.269	0	0	0	97	0	SH3RF2	intronic	NA
MB_SHH_T2--5	chr5:145377383	C	NA	81	0	81	35.963	3.970	0	0	0	77	0	SH3RF2	intronic	NA
MB_SHH_T2--6	chr5:145377383	C	NA	62	0	62	36.758	4.647	0	0	0	57	0	SH3RF2	intronic	NA
MB_SHH_T2--GL	chr5:145377383	C	NA	130	0	130	36.123	4.507	0	0	0	119	0	SH3RF2	intronic	NA
MB_SHH_T2--1	chr6:123581805	G	NA	17	0	16	28.500	10.838	0	0	0	8	0	TRDN	intronic	NA
MB_SHH_T2--2	chr6:123581805	G	NA	45	0	43	29.372	11.520	0	0	0	26	0	TRDN	intronic	NA
MB_SHH_T2--3	chr6:123581805	G	A	39	0.205	30	30.933	9.165	8	20.625	13.081	21	3	TRDN	intronic	NA
MB_SHH_T2--4	chr6:123581805	G	A	36	0.083	33	30.273	9.885	3	34.333	1.155	21	3	TRDN	intronic	NA
MB_SHH_T2--5	chr6:123581805	G	NA	22	0	21	25.286	11.105	0	0	0	9	0	TRDN	intronic	NA
MB_SHH_T2--6	chr6:123581805	G	A	27	0.185	22	31.455	11.915	5	34.400	0.894	14	5	TRDN	intronic	NA
MB_SHH_T2--GL	chr6:123581805	G	NA	68	0	64	29.297	11.333	0	0	0	39	0	TRDN	intronic	NA
MB_SHH_T2--1	chr6:144165809	C	T	54	0.315	37	24.973	9.830	17	24.118	11.096	19	8	LTV1	intronic	NA
MB_SHH_T2--2	chr6:144165809	C	T	44	0.045	41	23.146	9.741	2	28.500	10.607	12	1	LTV1	intronic	NA
MB_SHH_T2--3	chr6:144165809	C	T	42	0.262	31	24.710	10.107	11	24.182	11.017	15	5	LTV1	intronic	NA
MB_SHH_T2--4	chr6:144165809	C	T	32	0.344	21	25.762	8.396	11	24.727	8.320	10	4	LTV1	intronic	NA
MB_SHH_T2--5	chr6:144165809	C	T	35	0.486	18	23.000	10.787	17	27.000	9.618	7	8	LTV1	intronic	NA
MB_SHH_T2--6	chr6:144165809	C	NA	24	0	23	23.000	8.739	0	0	0	5	0	LTV1	intronic	NA
MB_SHH_T2--GL	chr6:144165809	C	NA	50	0	44	25.773	8.983	0	0	0	17	0	LTV1	intronic	NA
MB_SHH_T2--1	chr6:33402877	G	A	79	0.241	60	32.700	5.033	19	33.316	1.376	50	19	SYNGAP1	intronic	NA
MB_SHH_T2--2	chr6:33402877	G	A	62	0.306	43	31.744	6.601	19	33.421	1.575	36	19	SYNGAP1	intronic	NA
MB_SHH_T2--3	chr6:33402877	G	A	80	0.263	59	31.559	5.814	21	33.952	1.203	48	21	SYNGAP1	intronic	NA
MB_SHH_T2--4	chr6:33402877	G	NA	63	0	46	32.543	5.664	0	0	0	37	0	SYNGAP1	intronic	NA
MB_SHH_T2--5	chr6:33402877	G	A	67	0.194	54	30.833	7.399	13	33.923	1.320	39	13	SYNGAP1	intronic	NA
MB_SHH_T2--6	chr6:33402877	G	A	57	0.263	42	32.833	5.179	15	33.133	1.407	36	15	SYNGAP1	intronic	NA
MB_SHH_T2--GL	chr6:33402877	G	NA	58	0	43	34.023	3.668	0	0	0	40	0	SYNGAP1	intronic	NA
MB_SHH_T2--1	chr6:39152285	C	NA	86	0	85	36.318	4.878	0	0	0	80	0	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--2	chr6:39152285	C	T	57	0.018	56	35.339	5.664	1	34.000	0.000	51	1	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--3	chr6:39152285	C	T	73	0.178	60	35.967	4.029	13	34.769	6.180	57	12	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--4	chr6:39152285	C	T	70	0.057	66	35.273	4.957	4	35.500	4.509	60	4	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--5	chr6:39152285	C	NA	68	0	68	36.779	3.669	0	0	0	65	0	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--6	chr6:39152285	C	T	59	0.254	44	35.818	6.814	15	35.133	4.454	39	13	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--GL	chr6:39152285	C	NA	57	0	57	36.404	4.667	0	0	0	53	0	SAYSD1(dist=69420),KCNK5(dist=4462)	intergenic	NA
MB_SHH_T2--1	chr7:100608268	C	T	93	0.172	76	35.066	6.087	16	33.812	3.038	68	15	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--2	chr7:100608268	C	NA	58	0	58	34.828	5.404	0	0	0	51	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--3	chr7:100608268	C	NA	78	0	78	35.667	4.480	0	0	0	72	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--4	chr7:100608268	C	T	67	0.015	66	36.909	3.503	1	34.000	0.000	63	1	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--5	chr7:100608268	C	NA	69	0	69	35.899	4.719	0	0	0	64	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--6	chr7:100608268	C	NA	88	0	88	35.773	5.807	0	0	0	81	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--GL	chr7:100608268	C	NA	65	0	65	35.615	4.018	0	0	0	60	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T2--1	chr7:12511563	G	A	79	0.253	55	30.109	11.696	20	30.850	8.100	36	16	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--2	chr7:12511563	G	NA	85	0	75	30.093	12.685	0	0	0	50	0	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--3	chr7:12511563	G	NA	74	0	63	33.429	8.630	0	0	0	50	0	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--4	chr7:12511563	G	NA	73	0	59	30.966	11.253	0	0	0	41	0	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--5	chr7:12511563	G	A	73	0.219	56	32.214	10.050	16	31.375	7.302	41	14	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--6	chr7:12511563	G	NA	46	0	43	32.372	10.883	0	0	0	32	0	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--GL	chr7:12511563	G	NA	73	0	63	32.063	10.700	0	0	0	47	0	VWDE(dist=67711),SCIN(dist=98640)	intergenic	NA
MB_SHH_T2--1	chr7:35053027	C	NA	28	0	28	35.036	7.229	0	0	0	23	0	DPY19L1	intronic	NA
MB_SHH_T2--2	chr7:35053027	C	NA	51	0	51	37.137	5.177	0	0	0	48	0	DPY19L1	intronic	NA
MB_SHH_T2--3	chr7:35053027	C	NA	45	0	44	37.682	4.290	0	0	0	42	0	DPY19L1	intronic	NA
MB_SHH_T2--4	chr7:35053027	C	NA	36	0	35	36.257	7.547	0	0	0	31	0	DPY19L1	intronic	NA
MB_SHH_T2--5	chr7:35053027	C	NA	29	0	29	35.000	6.980	0	0	0	26	0	DPY19L1	intronic	NA
MB_SHH_T2--6	chr7:35053027	C	A	23	0.174	19	35.895	4.852	4	38.250	5.500	16	4	DPY19L1	intronic	NA
MB_SHH_T2--GL	chr7:35053027	C	NA	45	0	45	37.111	5.432	0	0	0	43	0	DPY19L1	intronic	NA
MB_SHH_T2--1	chr7:35131355	T	G	39	0.051	36	33.056	5.037	2	32.000	1.414	34	2	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--2	chr7:35131355	T	G	35	0.086	32	33.438	4.892	3	29.000	1.732	27	1	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--3	chr7:35131355	T	G	49	0.041	47	33.638	5.681	2	32.500	3.536	41	2	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--4	chr7:35131355	T	G	32	0.219	24	34.667	2.839	7	31.429	3.952	24	6	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--5	chr7:35131355	T	G	33	0.030	32	34.781	3.892	1	31.000	0.000	31	1	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--6	chr7:35131355	T	NA	26	0	26	33.077	4.204	0	0	0	22	0	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--GL	chr7:35131355	T	NA	35	0	35	32.571	6.209	0	0	0	30	0	DPY19L2P1	ncRNA_intronic	NA
MB_SHH_T2--1	chr7:38281916	G	C	59	0.034	57	34.509	7.018	2	36.000	1.414	52	2	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--2	chr7:38281916	G	C	64	0.031	62	35.548	5.633	2	37.000	0.000	59	2	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--3	chr7:38281916	G	NA	51	0	51	34.059	7.095	0	0	0	44	0	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--4	chr7:38281916	G	NA	46	0	45	36.956	4.101	0	0	0	44	0	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--5	chr7:38281916	G	NA	49	0	47	35.617	5.020	0	0	0	42	0	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--6	chr7:38281916	G	C	45	0.222	35	35.143	4.299	10	36.600	0.843	30	10	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--GL	chr7:38281916	G	NA	49	0	48	35.021	4.991	0	0	0	43	0	STARD3NL(dist=11644),TARP(dist=17328)	intergenic	NA
MB_SHH_T2--1	chr7:38281918	G	T	59	0.034	57	33.298	5.368	2	36.500	3.536	49	2	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--2	chr7:38281918	G	T	63	0.032	61	33.230	6.604	2	39.000	0.000	50	2	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--3	chr7:38281918	G	NA	52	0	52	32.365	7.077	0	0	0	37	0	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--4	chr7:38281918	G	NA	46	0	46	34.000	4.803	0	0	0	40	0	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--5	chr7:38281918	G	T	49	0.020	48	33.625	6.420	1	37.000	0.000	39	1	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--6	chr7:38281918	G	T	45	0.222	35	33.029	5.096	10	38.000	1.944	29	10	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--GL	chr7:38281918	G	NA	48	0	48	32.083	7.693	0	0	0	37	0	STARD3NL(dist=11646),TARP(dist=17326)	intergenic	NA
MB_SHH_T2--1	chr7:56894413	C	NA	57	0	57	34.421	5.666	0	0	0	49	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--2	chr7:56894413	C	NA	66	0	66	32.864	7.325	0	0	0	48	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--3	chr7:56894413	C	NA	63	0	63	32.651	7.395	0	0	0	46	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--4	chr7:56894413	C	T	45	0.200	35	31.829	8.386	9	26.444	11.414	26	5	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--5	chr7:56894413	C	NA	71	0	71	34.549	4.974	0	0	0	59	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--6	chr7:56894413	C	NA	63	0	63	32.810	7.339	0	0	0	49	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--GL	chr7:56894413	C	NA	34	0	34	34.559	5.338	0	0	0	30	0	LOC101928401(dist=288590),LOC100130849(dist=48665)	intergenic	NA
MB_SHH_T2--1	chr7:94056182	G	A	64	0.500	32	36.125	3.982	32	36.344	4.611	30	30	COL1A2	intronic	NA
MB_SHH_T2--2	chr7:94056182	G	A	64	0.469	34	34.912	4.987	30	36.133	3.126	31	29	COL1A2	intronic	NA
MB_SHH_T2--3	chr7:94056182	G	A	63	0.349	41	35.537	5.971	22	36.545	4.091	38	21	COL1A2	intronic	NA
MB_SHH_T2--4	chr7:94056182	G	A	58	0.552	26	31.885	9.175	32	35.906	3.796	21	31	COL1A2	intronic	NA
MB_SHH_T2--5	chr7:94056182	G	A	61	0.475	32	33.906	6.198	29	35.448	6.539	27	26	COL1A2	intronic	NA
MB_SHH_T2--6	chr7:94056182	G	A	31	0.387	19	36.158	3.905	12	37.583	2.275	18	12	COL1A2	intronic	NA
MB_SHH_T2--GL	chr7:94056182	G	NA	75	0	75	36.027	4.943	0	0	0	71	0	COL1A2	intronic	NA
MB_SHH_T2--1	chr7:94058420	C	NA	34	0	33	31.970	7.796	0	0	0	24	0	COL1A2	intronic	NA
MB_SHH_T2--2	chr7:94058420	C	T	28	0.036	27	33.556	5.591	1	29.000	0.000	22	0	COL1A2	intronic	NA
MB_SHH_T2--3	chr7:94058420	C	T	44	0.023	43	30.767	9.065	1	31.000	0.000	29	1	COL1A2	intronic	NA
MB_SHH_T2--4	chr7:94058420	C	T	32	0.188	26	34.308	6.182	6	33.500	3.886	22	5	COL1A2	intronic	NA
MB_SHH_T2--5	chr7:94058420	C	T	15	0.400	9	31.556	8.791	6	25.000	7.211	7	1	COL1A2	intronic	NA
MB_SHH_T2--6	chr7:94058420	C	T	31	0.290	22	29.591	8.461	9	30.333	10.012	14	7	COL1A2	intronic	NA
MB_SHH_T2--GL	chr7:94058420	C	NA	50	0	45	33.422	7.794	0	0	0	36	0	COL1A2	intronic	NA
MB_SHH_T2--1	chr7:94058421	T	NA	34	0	30	35.200	4.390	0	0	0	26	0	COL1A2	intronic	NA
MB_SHH_T2--2	chr7:94058421	T	NA	27	0	23	36.348	3.270	0	0	0	22	0	COL1A2	intronic	NA
MB_SHH_T2--3	chr7:94058421	T	NA	44	0	41	35.683	4.916	0	0	0	35	0	COL1A2	intronic	NA
MB_SHH_T2--4	chr7:94058421	T	C	33	0.061	30	35.733	6.674	2	33.000	1.414	27	2	COL1A2	intronic	NA
MB_SHH_T2--5	chr7:94058421	T	NA	16	0	12	32.250	6.744	0	0	0	7	0	COL1A2	intronic	NA
MB_SHH_T2--6	chr7:94058421	T	C	31	0.226	21	34.952	6.599	7	34.286	2.430	18	7	COL1A2	intronic	NA
MB_SHH_T2--GL	chr7:94058421	T	NA	50	0	47	35.426	6.560	0	0	0	41	0	COL1A2	intronic	NA
MB_SHH_T2--1	chr8:120818375	T	C	45	0.133	39	36.744	3.567	6	35.500	1.975	37	6	TAF2	intronic	NA
MB_SHH_T2--2	chr8:120818375	T	C	53	0.038	51	35.725	5.546	2	34.500	3.536	45	2	TAF2	intronic	NA
MB_SHH_T2--3	chr8:120818375	T	C	38	0.105	34	35.147	5.955	4	35.500	3.000	29	4	TAF2	intronic	NA
MB_SHH_T2--4	chr8:120818375	T	C	34	0.088	31	33.065	8.173	3	37.000	0.000	24	3	TAF2	intronic	NA
MB_SHH_T2--5	chr8:120818375	T	C	56	0.089	50	35.080	7.030	5	31.800	4.970	43	3	TAF2	intronic	NA
MB_SHH_T2--6	chr8:120818375	T	C	45	0.267	33	35.242	6.315	12	34.333	7.797	28	11	TAF2	intronic	NA
MB_SHH_T2--GL	chr8:120818375	T	NA	37	0	37	34.892	5.710	0	0	0	33	0	TAF2	intronic	NA
MB_SHH_T2--1	chr8:128099601	G	NA	118	0	117	35.564	2.966	0	0	0	114	0	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--2	chr8:128099601	G	A	151	0.007	149	34.839	4.529	1	37.000	0.000	130	1	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--3	chr8:128099601	G	NA	117	0	117	34.239	5.894	0	0	0	102	0	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--4	chr8:128099601	G	A	121	0.207	96	35.198	4.949	25	34.800	4.368	88	22	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--5	chr8:128099601	G	NA	92	0	91	34.901	4.379	0	0	0	86	0	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--6	chr8:128099601	G	NA	96	0	95	35.042	4.903	0	0	0	88	0	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--GL	chr8:128099601	G	NA	154	0	154	34.565	5.323	0	0	0	138	0	PRNCR1	ncRNA_exonic	NA
MB_SHH_T2--1	chr9:134010423	C	NA	18	0	18	37.000	2.567	0	0	0	18	0	NUP214	intronic	NA
MB_SHH_T2--2	chr9:134010423	C	NA	23	0	23	36.957	3.831	0	0	0	22	0	NUP214	intronic	NA
MB_SHH_T2--3	chr9:134010423	C	T	22	0.227	17	32.412	6.801	5	34.000	2.000	13	5	NUP214	intronic	NA
MB_SHH_T2--4	chr9:134010423	C	NA	19	0	18	36.111	5.880	0	0	0	16	0	NUP214	intronic	NA
MB_SHH_T2--5	chr9:134010423	C	NA	18	0	18	34.444	6.336	0	0	0	14	0	NUP214	intronic	NA
MB_SHH_T2--6	chr9:134010423	C	NA	21	0	21	34.571	4.249	0	0	0	19	0	NUP214	intronic	NA
MB_SHH_T2--GL	chr9:134010423	C	NA	46	0	46	35.761	3.267	0	0	0	44	0	NUP214	intronic	NA
MB_SHH_T2--1	chr9:138236228	C	NA	40	0	40	36.375	6.024	0	0	0	37	0	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--2	chr9:138236228	C	NA	34	0	34	36.088	6.534	0	0	0	31	0	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--3	chr9:138236228	C	T	31	0.871	4	37.750	1.258	27	37.407	4.299	4	26	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--4	chr9:138236228	C	T	33	0.030	32	36.625	3.554	1	37.000	0.000	31	1	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--5	chr9:138236228	C	T	36	0.056	34	36.176	4.576	2	41.000	0.000	32	2	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--6	chr9:138236228	C	T	32	0.031	31	37.871	3.284	1	37.000	0.000	31	1	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--GL	chr9:138236228	C	NA	52	0	52	35.288	5.775	0	0	0	47	0	C9orf62	exonic	nonsynonymous_SNV
MB_SHH_T2--1	chr9:66461634	G	A	60	0.067	50	35.580	7.365	4	31.250	5.560	44	3	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--2	chr9:66461634	G	A	70	0.143	50	34.260	6.951	10	29.100	7.094	42	5	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--3	chr9:66461634	G	A	67	0.119	58	37.276	4.303	8	33.250	6.319	55	6	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--4	chr9:66461634	G	A	63	0.159	48	36.208	4.635	10	36.500	3.629	44	10	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--5	chr9:66461634	G	A	65	0.108	49	36.061	5.348	7	34.000	2.517	43	7	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--6	chr9:66461634	G	A	60	0.033	48	36.021	6.406	2	36.500	4.950	45	2	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--GL	chr9:66461634	G	NA	58	0	49	36.633	5.040	0	0	0	45	0	SPATA31A5(dist=952024),PTGER4P2-CDK2AP2P2(dist=32635)	intergenic	NA
MB_SHH_T2--1	chr9:66500575	C	T	32	0.062	30	34.533	3.126	2	33.500	2.121	28	2	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--2	chr9:66500575	C	T	26	0.192	21	34.905	3.161	5	36.000	3.317	20	5	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--3	chr9:66500575	C	T	46	0.130	39	34.462	4.254	6	33.500	2.739	36	5	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--4	chr9:66500575	C	T	35	0.314	24	34.417	3.670	11	34.636	4.105	21	10	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--5	chr9:66500575	C	T	24	0.292	17	34.941	3.766	7	30.429	9.947	15	6	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--6	chr9:66500575	C	T	30	0.200	24	33.875	6.230	6	34.667	4.633	22	5	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--GL	chr9:66500575	C	NA	34	0	34	33.941	4.849	0	0	0	28	0	PTGER4P2-CDK2AP2P2	ncRNA_exonic	NA
MB_SHH_T2--1	chr9:68416247	A	G	62	0.081	57	34.825	5.376	5	36.400	2.510	49	5	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--2	chr9:68416247	A	G	52	0.115	46	35.348	4.771	6	34.333	6.154	40	5	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--3	chr9:68416247	A	G	61	0.164	51	34.706	5.467	10	35.100	9.255	45	9	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--4	chr9:68416247	A	G	48	0.167	40	35.025	4.985	8	35.500	5.099	36	7	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--5	chr9:68416247	A	G	36	0.028	35	33.514	7.330	1	32.000	0.000	31	1	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--6	chr9:68416247	A	G	47	0.043	45	34.444	5.790	2	36.000	2.828	39	2	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--GL	chr9:68416247	A	NA	43	0	43	35.279	3.494	0	0	0	42	0	ANKRD20A3(dist=445954),LOC642236(dist=11536)	intergenic	NA
MB_SHH_T2--1	chr9:69247501	G	NA	69	0	60	32.767	10.874	0	0	0	47	0	CBWD6	intronic	NA
MB_SHH_T2--2	chr9:69247501	G	NA	89	0	79	34.823	8.157	0	0	0	67	0	CBWD6	intronic	NA
MB_SHH_T2--3	chr9:69247501	G	A	114	0.211	90	33.322	10.118	24	20.375	11.076	71	8	CBWD6	intronic	NA
MB_SHH_T2--4	chr9:69247501	G	NA	82	0	72	34.097	9.098	0	0	0	56	0	CBWD6	intronic	NA
MB_SHH_T2--5	chr9:69247501	G	A	67	0.313	46	32.043	9.566	21	23.714	9.915	35	7	CBWD6	intronic	NA
MB_SHH_T2--6	chr9:69247501	G	NA	57	0	51	31.863	11.426	0	0	0	39	0	CBWD6	intronic	NA
MB_SHH_T2--GL	chr9:69247501	G	NA	229	0	216	30.329	11.062	0	0	0	140	0	CBWD6	intronic	NA
MB_SHH_T2--1	chrM:13039	N	T	1438	0.788	0	0.000	0.000	1133	35.685	5.582	0	1024	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--2	chrM:13039	N	T	1335	0.631	0	0.000	0.000	843	36.301	4.391	0	788	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--3	chrM:13039	N	T	1156	0.426	0	0.000	0.000	493	35.933	5.081	0	454	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--4	chrM:13039	N	T	1052	0.683	0	0.000	0.000	718	36.086	4.977	0	660	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--5	chrM:13039	N	T	1162	0.659	0	0.000	0.000	766	36.235	4.679	0	710	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--6	chrM:13039	N	T	1191	0.454	0	0.000	0.000	541	35.540	5.817	0	484	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T2--GL	chrM:13039	N	T	346	0.098	0	0.000	0.000	34	36.382	4.658	0	31	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
MB_SHH_T3--1	chr10:69770355	C	A	14	0.214	11	36.182	3.894	3	39.000	1.732	10	3	HERC4	intronic	NA
MB_SHH_T3--2	chr10:69770355	C	NA	35	0	35	34.600	6.567	0	0	0	31	0	HERC4	intronic	NA
MB_SHH_T3--3	chr10:69770355	C	NA	22	0	22	33.955	5.507	0	0	0	17	0	HERC4	intronic	NA
MB_SHH_T3--GL	chr10:69770355	C	NA	43	0	43	35.302	5.458	0	0	0	40	0	HERC4	intronic	NA
MB_SHH_T3--1	chr10:79589101	C	NA	20	0	20	36.650	2.159	0	0	0	20	0	DLG5	intronic	NA
MB_SHH_T3--2	chr10:79589101	C	A	27	0.148	23	35.435	2.936	4	36.750	2.872	22	4	DLG5	intronic	NA
MB_SHH_T3--3	chr10:79589101	C	NA	18	0	18	36.889	1.711	0	0	0	18	0	DLG5	intronic	NA
MB_SHH_T3--GL	chr10:79589101	C	NA	42	0	42	36.071	3.071	0	0	0	40	0	DLG5	intronic	NA
MB_SHH_T3--1	chr11:108216738	G	A	22	0.045	21	36.905	3.434	1	37.000	0.000	20	1	ATM	intronic	NA
MB_SHH_T3--2	chr11:108216738	G	A	26	0.115	23	36.565	3.975	3	35.667	2.309	22	3	ATM	intronic	NA
MB_SHH_T3--3	chr11:108216738	G	A	25	0.200	20	36.600	4.083	5	35.600	4.980	18	4	ATM	intronic	NA
MB_SHH_T3--GL	chr11:108216738	G	NA	36	0	36	37.306	2.012	0	0	0	36	0	ATM	intronic	NA
MB_SHH_T3--1	chr1:117122282	G	NA	22	0	17	31.941	10.568	0	0	0	13	0	IGSF3	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr1:117122282	G	C	41	0.220	19	34.316	5.706	9	34.333	2.000	17	9	IGSF3	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr1:117122282	G	C	34	0.176	18	33.833	4.694	6	33.333	3.670	15	5	IGSF3	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr1:117122282	G	NA	49	0	37	33.297	6.662	0	0	0	31	0	IGSF3	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr1:145296776	T	C	17	0.235	13	32.923	10.859	4	34.750	8.617	10	3	NBPF25P	ncRNA_intronic	NA
MB_SHH_T3--2	chr1:145296776	T	C	53	0.113	47	37.213	4.364	6	34.833	9.827	45	5	NBPF25P	ncRNA_intronic	NA
MB_SHH_T3--3	chr1:145296776	T	C	60	0.133	52	36.788	3.653	8	37.250	2.188	48	8	NBPF25P	ncRNA_intronic	NA
MB_SHH_T3--GL	chr1:145296776	T	NA	53	0	53	36.698	5.326	0	0	0	49	0	NBPF25P	ncRNA_intronic	NA
MB_SHH_T3--1	chr1:148012902	C	NA	24	0	10	35.100	7.125	0	0	0	9	0	NBPF8	intronic	NA
MB_SHH_T3--2	chr1:148012902	C	G	35	0.057	17	35.588	3.203	2	37.000	0.000	16	2	NBPF8	intronic	NA
MB_SHH_T3--3	chr1:148012902	C	G	37	0.378	22	36.545	2.923	14	36.500	2.849	21	13	NBPF8	intronic	NA
MB_SHH_T3--GL	chr1:148012902	C	NA	48	0	48	36.646	1.984	0	0	0	47	0	NBPF8	intronic	NA
MB_SHH_T3--1	chr1:155727076	G	NA	30	0	30	35.233	4.272	0	0	0	27	0	GON4L	exonic	synonymous_SNV
MB_SHH_T3--2	chr1:155727076	G	NA	28	0	28	35.536	3.911	0	0	0	26	0	GON4L	exonic	synonymous_SNV
MB_SHH_T3--3	chr1:155727076	G	A	33	0.212	26	35.538	4.130	7	34.429	3.780	24	6	GON4L	exonic	synonymous_SNV
MB_SHH_T3--GL	chr1:155727076	G	NA	73	0	72	35.625	3.208	0	0	0	68	0	GON4L	exonic	synonymous_SNV
MB_SHH_T3--1	chr1:155899515	C	NA	20	0	20	34.950	7.104	0	0	0	19	0	KIAA0907	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr1:155899515	C	A	18	0.222	14	35.071	6.650	4	36.000	2.000	12	4	KIAA0907	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr1:155899515	C	NA	19	0	19	36.947	3.423	0	0	0	18	0	KIAA0907	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr1:155899515	C	NA	40	0	40	34.550	7.507	0	0	0	36	0	KIAA0907	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr1:15783667	C	A	22	0.182	18	35.444	3.166	4	38.500	1.732	17	4	CELA2A	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr1:15783667	C	NA	27	0	27	36.333	3.328	0	0	0	26	0	CELA2A	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr1:15783667	C	NA	25	0	25	34.080	5.560	0	0	0	22	0	CELA2A	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr1:15783667	C	NA	45	0	45	36.711	2.702	0	0	0	45	0	CELA2A	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr1:16258592	C	NA	31	0	31	34.516	4.194	0	0	0	28	0	SPEN	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr1:16258592	C	NA	24	0	24	34.583	3.322	0	0	0	22	0	SPEN	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr1:16258592	C	A	24	0.167	20	33.350	4.793	4	36.000	2.000	17	4	SPEN	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr1:16258592	C	NA	41	0	41	34.049	6.008	0	0	0	39	0	SPEN	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr1:168262527	G	T	44	0.455	24	35.958	4.506	20	37.400	2.644	22	20	TBX19	intronic	NA
MB_SHH_T3--2	chr1:168262527	G	T	66	0.470	35	36.943	5.841	31	34.065	9.161	34	26	TBX19	intronic	NA
MB_SHH_T3--3	chr1:168262527	G	NA	83	0	83	36.554	4.947	0	0	0	78	0	TBX19	intronic	NA
MB_SHH_T3--GL	chr1:168262527	G	NA	77	0	76	35.382	6.671	0	0	0	69	0	TBX19	intronic	NA
MB_SHH_T3--1	chr11:73675860	G	NA	26	0	26	36.154	3.552	0	0	0	24	0	DNAJB13	intronic	NA
MB_SHH_T3--2	chr11:73675860	G	NA	30	0	30	36.000	3.404	0	0	0	28	0	DNAJB13	intronic	NA
MB_SHH_T3--3	chr11:73675860	G	C	38	0.368	24	31.000	8.562	14	34.429	5.244	17	11	DNAJB13	intronic	NA
MB_SHH_T3--GL	chr11:73675860	G	NA	35	0	35	36.971	3.761	0	0	0	33	0	DNAJB13	intronic	NA
MB_SHH_T3--1	chr11:9074689	G	A	12	0.500	6	37.833	2.787	6	36.833	2.229	6	6	SCUBE2	exonic	synonymous_SNV
MB_SHH_T3--2	chr11:9074689	G	A	12	0.583	5	33.200	8.228	7	33.714	4.030	3	6	SCUBE2	exonic	synonymous_SNV
MB_SHH_T3--3	chr11:9074689	G	NA	15	0	15	35.667	4.806	0	0	0	14	0	SCUBE2	exonic	synonymous_SNV
MB_SHH_T3--GL	chr11:9074689	G	NA	45	0	45	34.022	6.308	0	0	0	37	0	SCUBE2	exonic	synonymous_SNV
MB_SHH_T3--1	chr1:204413251	G	A	55	0.345	36	35.750	4.650	19	32.842	8.153	30	16	PIK3C2B	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr1:204413251	G	A	61	0.311	41	34.829	4.511	19	36.263	3.246	34	18	PIK3C2B	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr1:204413251	G	A	57	0.386	35	35.943	4.214	22	33.909	6.575	32	17	PIK3C2B	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr1:204413251	G	NA	80	0	80	36.087	4.774	0	0	0	73	0	PIK3C2B	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr12:102060676	C	T	16	0.875	2	21.500	21.920	14	36.571	2.209	1	14	MYBPC1	intronic	NA
MB_SHH_T3--2	chr12:102060676	C	T	46	0.870	6	35.500	2.950	40	32.600	8.387	6	33	MYBPC1	intronic	NA
MB_SHH_T3--3	chr12:102060676	C	NA	43	0	43	34.372	5.786	0	0	0	40	0	MYBPC1	intronic	NA
MB_SHH_T3--GL	chr12:102060676	C	NA	54	0	54	36.222	4.997	0	0	0	51	0	MYBPC1	intronic	NA
MB_SHH_T3--1	chr1:210405167	C	A	20	0.200	16	36.062	4.434	4	38.500	1.732	15	4	SERTAD4-AS1	ncRNA_intronic	NA
MB_SHH_T3--2	chr1:210405167	C	NA	27	0	27	36.778	3.683	0	0	0	25	0	SERTAD4-AS1	ncRNA_intronic	NA
MB_SHH_T3--3	chr1:210405167	C	NA	29	0	29	37.621	2.744	0	0	0	29	0	SERTAD4-AS1	ncRNA_intronic	NA
MB_SHH_T3--GL	chr1:210405167	C	NA	46	0	46	37.457	3.631	0	0	0	44	0	SERTAD4-AS1	ncRNA_intronic	NA
MB_SHH_T3--1	chr12:110570497	T	NA	45	0	44	38.045	2.778	0	0	0	43	0	IFT81	intronic	NA
MB_SHH_T3--2	chr12:110570497	T	NA	42	0	42	38.762	1.708	0	0	0	42	0	IFT81	intronic	NA
MB_SHH_T3--3	chr12:110570497	T	C	41	0.415	24	38.875	1.484	17	38.529	3.243	24	16	IFT81	intronic	NA
MB_SHH_T3--GL	chr12:110570497	T	NA	77	0	77	37.792	3.310	0	0	0	74	0	IFT81	intronic	NA
MB_SHH_T3--1	chr12:123103008	G	T	22	0.318	14	36.286	5.283	7	32.429	11.830	12	6	KNTC1	intronic	NA
MB_SHH_T3--2	chr12:123103008	G	T	32	0.531	11	37.273	3.036	17	37.353	2.499	11	17	KNTC1	intronic	NA
MB_SHH_T3--3	chr12:123103008	G	T	37	0.486	16	34.062	8.528	18	36.889	4.337	13	17	KNTC1	intronic	NA
MB_SHH_T3--GL	chr12:123103008	G	NA	51	0	51	35.647	6.039	0	0	0	45	0	KNTC1	intronic	NA
MB_SHH_T3--1	chr12:133202328	C	NA	18	0	18	34.778	5.996	0	0	0	16	0	POLE	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr12:133202328	C	A	15	0.200	12	36.750	2.598	3	39.000	1.732	12	3	POLE	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr12:133202328	C	A	21	0.095	19	35.105	7.520	2	35.000	2.828	18	2	POLE	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr12:133202328	C	NA	42	0	42	35.976	4.081	0	0	0	38	0	POLE	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr1:21582557	C	NA	19	0	19	32.000	8.557	0	0	0	14	0	ECE1	exonic	synonymous_SNV
MB_SHH_T3--2	chr1:21582557	C	NA	21	0	21	33.905	6.602	0	0	0	19	0	ECE1	exonic	synonymous_SNV
MB_SHH_T3--3	chr1:21582557	C	A	11	0.273	8	35.375	2.722	3	38.000	1.732	8	3	ECE1	exonic	synonymous_SNV
MB_SHH_T3--GL	chr1:21582557	C	NA	49	0	49	34.878	5.551	0	0	0	43	0	ECE1	exonic	synonymous_SNV
MB_SHH_T3--1	chr12:21699280	G	A	45	0.467	24	37.417	3.412	21	38.095	1.895	23	21	GYS2	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr12:21699280	G	A	64	0.375	40	37.675	3.339	24	36.542	3.647	38	22	GYS2	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr12:21699280	G	NA	92	0	92	37.435	3.662	0	0	0	89	0	GYS2	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr12:21699280	G	NA	67	0	67	37.791	3.595	0	0	0	65	0	GYS2	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr12:4737717	G	NA	43	0	43	36.349	3.015	0	0	0	41	0	AKAP3	exonic	synonymous_SNV
MB_SHH_T3--2	chr12:4737717	G	NA	72	0	72	36.194	4.037	0	0	0	67	0	AKAP3	exonic	synonymous_SNV
MB_SHH_T3--3	chr12:4737717	G	A	69	0.522	33	34.121	5.910	36	36.333	2.757	27	35	AKAP3	exonic	synonymous_SNV
MB_SHH_T3--GL	chr12:4737717	G	NA	63	0	63	36.413	3.119	0	0	0	61	0	AKAP3	exonic	synonymous_SNV
MB_SHH_T3--1	chr12:53040621	G	A	57	0.526	27	35.370	5.293	30	34.100	7.009	25	25	KRT2	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr12:53040621	G	A	116	0.474	61	35.475	5.665	55	34.236	6.354	52	47	KRT2	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr12:53040621	G	A	119	0.462	64	36.203	3.751	55	34.273	4.908	60	47	KRT2	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr12:53040621	G	NA	108	0	107	36.121	4.315	0	0	0	100	0	KRT2	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr12:53202504	C	NA	43	0	43	36.977	3.668	0	0	0	41	0	KRT4	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr12:53202504	C	NA	80	0	80	36.475	5.770	0	0	0	75	0	KRT4	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr12:53202504	C	T	79	0.405	47	36.851	4.379	32	36.688	5.038	45	30	KRT4	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr12:53202504	C	NA	105	0	105	37.152	3.422	0	0	0	99	0	KRT4	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr13:29004334	G	NA	31	0	31	37.742	2.977	0	0	0	30	0	FLT1	intronic	NA
MB_SHH_T3--2	chr13:29004334	G	NA	72	0	72	38.472	2.062	0	0	0	72	0	FLT1	intronic	NA
MB_SHH_T3--3	chr13:29004334	G	T	79	0.430	45	37.311	4.415	34	38.559	2.501	43	33	FLT1	intronic	NA
MB_SHH_T3--GL	chr13:29004334	G	NA	105	0	105	37.829	3.099	0	0	0	102	0	FLT1	intronic	NA
MB_SHH_T3--1	chr14:101514191	C	A	102	0.382	62	36.226	4.650	39	37.538	3.339	58	37	MIR381HG	ncRNA_intronic	NA
MB_SHH_T3--2	chr14:101514191	C	NA	142	0	142	36.732	4.077	0	0	0	134	0	MIR381HG	ncRNA_intronic	NA
MB_SHH_T3--3	chr14:101514191	C	NA	150	0	150	35.793	5.498	0	0	0	139	0	MIR381HG	ncRNA_intronic	NA
MB_SHH_T3--GL	chr14:101514191	C	NA	154	0	154	36.097	4.169	0	0	0	141	0	MIR381HG	ncRNA_intronic	NA
MB_SHH_T3--1	chr14:42367988	T	A	31	0.161	26	38.692	1.850	5	39.400	1.342	26	5	LRFN5	intronic	NA
MB_SHH_T3--2	chr14:42367988	T	NA	42	0	42	38.619	1.724	0	0	0	42	0	LRFN5	intronic	NA
MB_SHH_T3--3	chr14:42367988	T	NA	49	0	49	38.163	2.794	0	0	0	48	0	LRFN5	intronic	NA
MB_SHH_T3--GL	chr14:42367988	T	NA	40	0	40	38.775	2.359	0	0	0	39	0	LRFN5	intronic	NA
MB_SHH_T3--1	chr1:44587857	G	A	53	0.321	36	36.028	5.930	17	37.353	2.499	33	17	KLF17	intronic	NA
MB_SHH_T3--2	chr1:44587857	G	A	71	0.507	35	36.400	3.696	36	37.222	3.735	33	35	KLF17	intronic	NA
MB_SHH_T3--3	chr1:44587857	G	A	68	0.397	41	35.976	5.690	27	37.630	5.093	39	26	KLF17	intronic	NA
MB_SHH_T3--GL	chr1:44587857	G	NA	127	0	127	35.661	5.982	0	0	0	114	0	KLF17	intronic	NA
MB_SHH_T3--1	chr14:54875422	C	NA	87	0	87	36.943	3.817	0	0	0	85	0	CDKN3	intronic	NA
MB_SHH_T3--2	chr14:54875422	C	NA	101	0	101	37.604	3.556	0	0	0	98	0	CDKN3	intronic	NA
MB_SHH_T3--3	chr14:54875422	C	T	60	0.483	31	37.194	2.994	29	38.172	2.687	31	29	CDKN3	intronic	NA
MB_SHH_T3--GL	chr14:54875422	C	NA	81	0	81	36.222	4.785	0	0	0	78	0	CDKN3	intronic	NA
MB_SHH_T3--1	chr14:71215605	G	A	26	0.423	15	37.133	3.962	11	36.455	4.059	14	10	MAP3K9	exonic	stopgain_SNV
MB_SHH_T3--2	chr14:71215605	G	A	26	0.462	14	35.071	9.110	12	37.417	3.605	12	11	MAP3K9	exonic	stopgain_SNV
MB_SHH_T3--3	chr14:71215605	G	NA	30	0	30	37.667	2.998	0	0	0	29	0	MAP3K9	exonic	stopgain_SNV
MB_SHH_T3--GL	chr14:71215605	G	NA	46	0	46	36.696	5.211	0	0	0	44	0	MAP3K9	exonic	stopgain_SNV
MB_SHH_T3--1	chr15:101561213	C	A	23	0.391	14	37.214	0.802	9	33.889	4.256	14	7	LRRK1	intronic	NA
MB_SHH_T3--2	chr15:101561213	C	A	25	0.640	9	36.889	1.764	16	34.750	3.493	9	14	LRRK1	intronic	NA
MB_SHH_T3--3	chr15:101561213	C	A	24	0.542	11	36.273	1.618	13	35.154	2.075	11	13	LRRK1	intronic	NA
MB_SHH_T3--GL	chr15:101561213	C	NA	36	0	36	35.556	4.954	0	0	0	33	0	LRRK1	intronic	NA
MB_SHH_T3--1	chr15:63988312	G	NA	15	0	15	38.467	2.532	0	0	0	15	0	HERC1	intronic	NA
MB_SHH_T3--2	chr15:63988312	G	NA	13	0	13	36.846	3.338	0	0	0	13	0	HERC1	intronic	NA
MB_SHH_T3--3	chr15:63988312	G	A	18	0.444	10	37.100	4.228	8	36.875	4.257	9	7	HERC1	intronic	NA
MB_SHH_T3--GL	chr15:63988312	G	NA	37	0	37	37.000	4.378	0	0	0	36	0	HERC1	intronic	NA
MB_SHH_T3--1	chr15:71185336	C	A	22	0.182	18	37.278	2.718	4	35.000	2.309	18	4	LRRC49	intronic	NA
MB_SHH_T3--2	chr15:71185336	C	NA	43	0	43	37.233	3.228	0	0	0	42	0	LRRC49	intronic	NA
MB_SHH_T3--3	chr15:71185336	C	NA	32	0	31	35.677	5.455	0	0	0	26	0	LRRC49	intronic	NA
MB_SHH_T3--GL	chr15:71185336	C	NA	52	0	52	35.404	5.539	0	0	0	45	0	LRRC49	intronic	NA
MB_SHH_T3--1	chr15:71633455	C	NA	44	0	44	36.386	4.938	0	0	0	41	0	THSD4	intronic	NA
MB_SHH_T3--2	chr15:71633455	C	T	68	0.250	51	36.686	3.696	17	35.882	6.412	49	15	THSD4	intronic	NA
MB_SHH_T3--3	chr15:71633455	C	NA	70	0	70	36.400	3.499	0	0	0	66	0	THSD4	intronic	NA
MB_SHH_T3--GL	chr15:71633455	C	NA	65	0	65	35.631	5.064	0	0	0	58	0	THSD4	intronic	NA
MB_SHH_T3--1	chr16:30078544	C	A	17	0.176	14	31.214	7.876	3	37.000	0.000	9	3	ALDOA	intronic	NA
MB_SHH_T3--2	chr16:30078544	C	NA	15	0	15	36.333	2.320	0	0	0	15	0	ALDOA	intronic	NA
MB_SHH_T3--3	chr16:30078544	C	NA	26	0	26	36.115	5.574	0	0	0	23	0	ALDOA	intronic	NA
MB_SHH_T3--GL	chr16:30078544	C	NA	46	0	46	36.609	2.894	0	0	0	45	0	ALDOA	intronic	NA
MB_SHH_T3--1	chr16:4254526	C	NA	19	0	19	37.211	1.932	0	0	0	19	0	SRL	intronic	NA
MB_SHH_T3--2	chr16:4254526	C	NA	27	0	27	36.556	3.468	0	0	0	26	0	SRL	intronic	NA
MB_SHH_T3--3	chr16:4254526	C	A	11	0.273	8	37.625	2.387	3	36.667	3.512	8	3	SRL	intronic	NA
MB_SHH_T3--GL	chr16:4254526	C	NA	45	0	45	37.489	2.519	0	0	0	45	0	SRL	intronic	NA
MB_SHH_T3--1	chr16:46428062	T	NA	11	0	11	36.364	10.142	0	0	0	10	0	NONE(dist=NONE),ANKRD26P1(dist=75187)	intergenic	NA
MB_SHH_T3--2	chr16:46428062	T	NA	18	0	17	38.294	2.418	0	0	0	17	0	NONE(dist=NONE),ANKRD26P1(dist=75187)	intergenic	NA
MB_SHH_T3--3	chr16:46428062	T	A	18	0.278	13	37.462	4.875	5	38.800	1.643	12	5	NONE(dist=NONE),ANKRD26P1(dist=75187)	intergenic	NA
MB_SHH_T3--GL	chr16:46428062	T	NA	57	0	57	38.456	2.071	0	0	0	57	0	NONE(dist=NONE),ANKRD26P1(dist=75187)	intergenic	NA
MB_SHH_T3--1	chr16:84488676	A	NA	34	0	34	31.882	7.231	0	0	0	23	0	ATP2C2	intronic	NA
MB_SHH_T3--2	chr16:84488676	A	G	23	0.261	17	31.824	8.458	6	36.333	1.633	13	6	ATP2C2	intronic	NA
MB_SHH_T3--3	chr16:84488676	A	NA	22	0	22	30.955	5.908	0	0	0	14	0	ATP2C2	intronic	NA
MB_SHH_T3--GL	chr16:84488676	A	NA	43	0	43	31.930	8.905	0	0	0	34	0	ATP2C2	intronic	NA
MB_SHH_T3--1	chr16:84766768	C	NA	34	0	34	36.235	4.825	0	0	0	31	0	USP10	intronic	NA
MB_SHH_T3--2	chr16:84766768	C	NA	23	0	23	36.304	3.295	0	0	0	22	0	USP10	intronic	NA
MB_SHH_T3--3	chr16:84766768	C	A	22	0.227	17	36.176	2.325	5	35.400	5.505	17	4	USP10	intronic	NA
MB_SHH_T3--GL	chr16:84766768	C	NA	37	0	37	35.595	6.157	0	0	0	34	0	USP10	intronic	NA
MB_SHH_T3--1	chr17:17701053	C	A	18	0.167	15	36.133	2.100	3	39.000	1.732	15	3	RAI1	exonic	synonymous_SNV
MB_SHH_T3--2	chr17:17701053	C	NA	25	0	25	35.080	4.812	0	0	0	23	0	RAI1	exonic	synonymous_SNV
MB_SHH_T3--3	chr17:17701053	C	NA	21	0	21	35.667	4.363	0	0	0	18	0	RAI1	exonic	synonymous_SNV
MB_SHH_T3--GL	chr17:17701053	C	NA	33	0	33	36.545	3.474	0	0	0	32	0	RAI1	exonic	synonymous_SNV
MB_SHH_T3--1	chr17:3489091	C	A	14	0.214	11	35.000	4.539	3	35.667	2.309	9	3	TRPV1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr17:3489091	C	A	27	0.037	26	35.462	6.760	1	37.000	0.000	24	1	TRPV1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr17:3489091	C	NA	20	0	20	34.150	7.422	0	0	0	18	0	TRPV1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr17:3489091	C	NA	37	0	37	35.865	4.360	0	0	0	36	0	TRPV1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr17:3832036	C	T	35	0.400	21	36.381	4.092	14	28.929	9.723	20	10	ATP2A3	exonic	stopgain_SNV
MB_SHH_T3--2	chr17:3832036	C	T	42	0.357	27	36.000	3.563	15	35.333	3.599	26	14	ATP2A3	exonic	stopgain_SNV
MB_SHH_T3--3	chr17:3832036	C	T	39	0.410	23	34.783	2.795	16	36.812	3.430	22	15	ATP2A3	exonic	stopgain_SNV
MB_SHH_T3--GL	chr17:3832036	C	NA	73	0	73	34.356	5.075	0	0	0	65	0	ATP2A3	exonic	stopgain_SNV
MB_SHH_T3--1	chr17:74288421	A	NA	42	0	21	36.571	3.458	0	0	0	20	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr17:74288421	A	G	41	0.415	21	35.905	3.974	17	36.118	3.638	20	16	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr17:74288421	A	NA	56	0	30	35.300	6.763	0	0	0	27	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr17:74288421	A	NA	80	0	42	35.333	4.546	0	0	0	39	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr17:74288422	T	NA	42	0	21	35.524	4.262	0	0	0	18	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr17:74288422	T	C	41	0.488	21	33.429	7.325	20	36.650	3.014	18	20	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr17:74288422	T	NA	56	0	30	32.100	8.104	0	0	0	23	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr17:74288422	T	NA	78	0	40	33.500	6.009	0	0	0	31	0	QRICH2	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr19:3589918	G	T	45	0.578	19	35.842	2.410	26	34.615	4.891	19	24	GIPC3	intronic	NA
MB_SHH_T3--2	chr19:3589918	G	T	33	0.455	18	37.222	1.987	15	34.800	3.783	18	13	GIPC3	intronic	NA
MB_SHH_T3--3	chr19:3589918	G	T	33	0.515	16	35.625	5.987	17	34.059	5.963	15	14	GIPC3	intronic	NA
MB_SHH_T3--GL	chr19:3589918	G	NA	70	0	70	35.357	4.229	0	0	0	62	0	GIPC3	intronic	NA
MB_SHH_T3--1	chr19:36365779	C	A	16	0.188	13	35.462	3.550	3	35.333	4.041	12	3	APLP1	intronic	NA
MB_SHH_T3--2	chr19:36365779	C	NA	14	0	14	34.357	5.387	0	0	0	11	0	APLP1	intronic	NA
MB_SHH_T3--3	chr19:36365779	C	A	11	0.091	10	36.200	1.687	1	37.000	0.000	10	1	APLP1	intronic	NA
MB_SHH_T3--GL	chr19:36365779	C	NA	33	0	33	35.606	2.968	0	0	0	31	0	APLP1	intronic	NA
MB_SHH_T3--1	chr19:45409046	T	NA	36	0	36	35.944	3.198	0	0	0	34	0	APOE	UTR5	NA
MB_SHH_T3--2	chr19:45409046	T	NA	30	0	30	34.733	5.058	0	0	0	28	0	APOE	UTR5	NA
MB_SHH_T3--3	chr19:45409046	T	C	19	0.211	15	31.733	9.300	4	35.000	2.309	11	4	APOE	UTR5	NA
MB_SHH_T3--GL	chr19:45409046	T	NA	44	0	44	34.682	5.623	0	0	0	41	0	APOE	UTR5	NA
MB_SHH_T3--1	chr19:56702375	G	T	53	0.547	24	37.625	3.104	29	36.448	6.214	23	28	ZSCAN5B	intronic	NA
MB_SHH_T3--2	chr19:56702375	G	T	41	0.439	23	36.783	2.373	18	37.222	5.082	23	16	ZSCAN5B	intronic	NA
MB_SHH_T3--3	chr19:56702375	G	T	40	0.425	23	38.087	2.922	17	37.176	3.486	23	16	ZSCAN5B	intronic	NA
MB_SHH_T3--GL	chr19:56702375	G	NA	76	0	76	37.079	3.149	0	0	0	73	0	ZSCAN5B	intronic	NA
MB_SHH_T3--1	chr19:6420497	G	NA	37	0	37	36.081	3.796	0	0	0	35	0	KHSRP	intronic	NA
MB_SHH_T3--2	chr19:6420497	G	NA	25	0	25	35.000	6.513	0	0	0	23	0	KHSRP	intronic	NA
MB_SHH_T3--3	chr19:6420497	G	A	28	0.143	24	34.958	6.785	4	37.000	0.000	23	4	KHSRP	intronic	NA
MB_SHH_T3--GL	chr19:6420497	G	NA	59	0	59	35.000	6.256	0	0	0	51	0	KHSRP	intronic	NA
MB_SHH_T3--1	chr19:8000073	G	T	21	0.190	17	37.824	1.912	4	35.000	2.309	17	4	TIMM44	intronic	NA
MB_SHH_T3--2	chr19:8000073	G	NA	34	0	34	36.941	3.576	0	0	0	32	0	TIMM44	intronic	NA
MB_SHH_T3--3	chr19:8000073	G	T	24	0.167	20	35.950	5.808	4	34.000	2.000	17	4	TIMM44	intronic	NA
MB_SHH_T3--GL	chr19:8000073	G	NA	56	0	56	37.125	6.024	0	0	0	52	0	TIMM44	intronic	NA
MB_SHH_T3--1	chr20:61511331	G	NA	18	0	18	37.000	2.223	0	0	0	18	0	DIDO1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr20:61511331	G	NA	24	0	24	34.958	4.288	0	0	0	21	0	DIDO1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr20:61511331	G	A	19	0.316	13	36.385	1.502	6	35.333	4.082	13	5	DIDO1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr20:61511331	G	NA	36	0	36	37.056	1.835	0	0	0	36	0	DIDO1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr2:101869802	A	G	15	0.200	12	35.833	3.010	3	36.667	3.512	11	3	CNOT11	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr2:101869802	A	NA	14	0	14	33.714	8.552	0	0	0	12	0	CNOT11	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr2:101869802	A	NA	17	0	17	33.235	6.888	0	0	0	13	0	CNOT11	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr2:101869802	A	NA	38	0	38	31.895	8.324	0	0	0	26	0	CNOT11	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr2:162136825	G	A	33	0.152	28	38.286	3.029	5	38.000	3.082	27	5	AC009299.3(dist=31264),PSMD14(dist=27961)	intergenic	NA
MB_SHH_T3--2	chr2:162136825	G	A	27	0.074	25	38.440	2.417	2	33.500	9.192	25	1	AC009299.3(dist=31264),PSMD14(dist=27961)	intergenic	NA
MB_SHH_T3--3	chr2:162136825	G	A	45	0.044	43	37.140	6.010	2	36.500	4.950	39	2	AC009299.3(dist=31264),PSMD14(dist=27961)	intergenic	NA
MB_SHH_T3--GL	chr2:162136825	G	NA	45	0	45	37.533	4.813	0	0	0	43	0	AC009299.3(dist=31264),PSMD14(dist=27961)	intergenic	NA
MB_SHH_T3--1	chr22:22469383	G	A	27	0.370	17	37.647	3.121	10	35.000	5.011	16	9	TOP3B(dist=132143),VPREB1(dist=129817)	intergenic	NA
MB_SHH_T3--2	chr22:22469383	G	A	51	0.255	38	37.974	2.509	13	36.692	2.869	37	13	TOP3B(dist=132143),VPREB1(dist=129817)	intergenic	NA
MB_SHH_T3--3	chr22:22469383	G	NA	41	0	41	37.195	3.558	0	0	0	39	0	TOP3B(dist=132143),VPREB1(dist=129817)	intergenic	NA
MB_SHH_T3--GL	chr22:22469383	G	NA	64	0	63	37.111	3.106	0	0	0	62	0	TOP3B(dist=132143),VPREB1(dist=129817)	intergenic	NA
MB_SHH_T3--1	chr22:24709505	C	A	14	0.214	11	34.273	3.133	3	36.667	3.512	10	3	SPECC1L-ADORA2A	ncRNA_intronic	NA
MB_SHH_T3--2	chr22:24709505	C	NA	37	0	37	35.054	4.371	0	0	0	35	0	SPECC1L-ADORA2A	ncRNA_intronic	NA
MB_SHH_T3--3	chr22:24709505	C	NA	32	0	32	34.500	4.958	0	0	0	29	0	SPECC1L-ADORA2A	ncRNA_intronic	NA
MB_SHH_T3--GL	chr22:24709505	C	NA	35	0	35	36.114	2.676	0	0	0	35	0	SPECC1L-ADORA2A	ncRNA_intronic	NA
MB_SHH_T3--1	chr22:30891985	C	A	21	0.190	17	35.706	4.934	4	35.000	2.309	15	4	SEC14L4	intronic	NA
MB_SHH_T3--2	chr22:30891985	C	NA	27	0	27	35.963	2.667	0	0	0	26	0	SEC14L4	intronic	NA
MB_SHH_T3--3	chr22:30891985	C	NA	19	0	19	37.368	2.033	0	0	0	19	0	SEC14L4	intronic	NA
MB_SHH_T3--GL	chr22:30891985	C	NA	50	0	50	35.620	4.150	0	0	0	47	0	SEC14L4	intronic	NA
MB_SHH_T3--1	chr22:42605851	C	NA	27	0	27	35.630	6.386	0	0	0	26	0	TCF20	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr22:42605851	C	NA	16	0	16	37.188	2.482	0	0	0	16	0	TCF20	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr22:42605851	C	A	15	0.200	12	37.000	2.763	3	38.000	1.732	12	3	TCF20	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr22:42605851	C	NA	44	0	44	36.818	3.364	0	0	0	42	0	TCF20	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr22:45927276	T	C	23	0.174	19	37.211	3.881	4	35.000	2.309	17	4	FBLN1	intronic	NA
MB_SHH_T3--2	chr22:45927276	T	NA	23	0	23	37.739	1.738	0	0	0	23	0	FBLN1	intronic	NA
MB_SHH_T3--3	chr22:45927276	T	NA	35	0	35	36.029	4.756	0	0	0	33	0	FBLN1	intronic	NA
MB_SHH_T3--GL	chr22:45927276	T	NA	39	0	39	37.256	5.604	0	0	0	38	0	FBLN1	intronic	NA
MB_SHH_T3--1	chr3:138329870	C	T	13	0.231	10	35.500	4.950	3	35.667	2.309	8	3	FAIM	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr3:138329870	C	NA	18	0	18	37.000	2.223	0	0	0	18	0	FAIM	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr3:138329870	C	NA	28	0	28	34.036	6.563	0	0	0	23	0	FAIM	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr3:138329870	C	NA	33	0	33	34.909	5.451	0	0	0	26	0	FAIM	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr3:166409304	C	T	45	0.467	24	37.083	3.092	21	37.667	3.512	23	20	BCHE(dist=854051),ZBBX(dist=548773)	intergenic	NA
MB_SHH_T3--2	chr3:166409304	C	T	63	0.349	41	37.610	2.235	22	36.364	5.394	41	21	BCHE(dist=854051),ZBBX(dist=548773)	intergenic	NA
MB_SHH_T3--3	chr3:166409304	C	NA	72	0	72	36.653	3.639	0	0	0	68	0	BCHE(dist=854051),ZBBX(dist=548773)	intergenic	NA
MB_SHH_T3--GL	chr3:166409304	C	NA	52	0	52	36.212	3.992	0	0	0	48	0	BCHE(dist=854051),ZBBX(dist=548773)	intergenic	NA
MB_SHH_T3--1	chr3:183667641	C	NA	17	0	17	36.941	3.631	0	0	0	16	0	ABCC5	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr3:183667641	C	NA	14	0	14	35.214	6.290	0	0	0	13	0	ABCC5	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr3:183667641	C	A	13	0.308	9	37.667	1.323	4	36.000	2.000	9	4	ABCC5	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr3:183667641	C	NA	43	0	43	35.605	3.874	0	0	0	40	0	ABCC5	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr3:58139421	C	A	19	0.158	16	33.312	7.989	3	37.667	4.041	14	3	FLNB	intronic	NA
MB_SHH_T3--2	chr3:58139421	C	NA	30	0	30	34.733	6.147	0	0	0	27	0	FLNB	intronic	NA
MB_SHH_T3--3	chr3:58139421	C	NA	13	0	13	33.769	5.974	0	0	0	12	0	FLNB	intronic	NA
MB_SHH_T3--GL	chr3:58139421	C	NA	47	0	47	35.894	3.087	0	0	0	45	0	FLNB	intronic	NA
MB_SHH_T3--1	chr4:25677949	G	A	33	0.515	16	35.812	3.970	17	34.176	6.607	14	14	SLC34A2	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr4:25677949	G	A	70	0.543	32	34.000	4.421	38	35.368	3.258	27	36	SLC34A2	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr4:25677949	G	A	56	0.411	33	37.182	1.776	23	36.043	2.225	33	23	SLC34A2	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr4:25677949	G	NA	107	0	107	35.206	4.891	0	0	0	97	0	SLC34A2	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr4:88536955	T	C	41	0.220	32	34.031	6.626	9	29.889	6.864	26	5	DSPP	exonic	synonymous_SNV
MB_SHH_T3--2	chr4:88536955	T	C	81	0.123	70	32.714	7.221	10	32.400	4.115	52	7	DSPP	exonic	synonymous_SNV
MB_SHH_T3--3	chr4:88536955	T	C	91	0.110	81	33.654	7.089	10	30.900	9.243	67	8	DSPP	exonic	synonymous_SNV
MB_SHH_T3--GL	chr4:88536955	T	NA	87	0	87	35.506	5.872	0	0	0	78	0	DSPP	exonic	synonymous_SNV
MB_SHH_T3--1	chr5:126792963	G	T	22	0.455	12	35.833	6.873	10	32.100	9.735	11	8	MEGF10	exonic	stopgain_SNV
MB_SHH_T3--2	chr5:126792963	G	T	30	0.467	16	37.625	2.306	14	32.286	10.034	16	11	MEGF10	exonic	stopgain_SNV
MB_SHH_T3--3	chr5:126792963	G	T	26	0.615	10	35.700	4.191	16	36.375	3.442	9	15	MEGF10	exonic	stopgain_SNV
MB_SHH_T3--GL	chr5:126792963	G	NA	44	0	44	36.750	2.950	0	0	0	43	0	MEGF10	exonic	stopgain_SNV
MB_SHH_T3--1	chr5:140744503	C	T	30	0.300	21	35.667	3.733	9	37.222	2.048	19	9	PCDHGA5	exonic	synonymous_SNV
MB_SHH_T3--2	chr5:140744503	C	T	46	0.435	26	36.962	2.088	20	34.400	6.134	26	17	PCDHGA5	exonic	synonymous_SNV
MB_SHH_T3--3	chr5:140744503	C	NA	52	0	52	36.500	2.873	0	0	0	50	0	PCDHGA5	exonic	synonymous_SNV
MB_SHH_T3--GL	chr5:140744503	C	NA	55	0	55	34.909	4.968	0	0	0	48	0	PCDHGA5	exonic	synonymous_SNV
MB_SHH_T3--1	chr5:154179317	C	A	21	0.190	17	37.529	2.577	4	36.750	2.872	17	4	LARP1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr5:154179317	C	NA	33	0	33	38.000	2.165	0	0	0	33	0	LARP1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr5:154179317	C	NA	18	0	18	37.333	2.425	0	0	0	18	0	LARP1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr5:154179317	C	NA	48	0	48	36.708	2.783	0	0	0	47	0	LARP1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr5:38485877	C	T	43	0.558	19	37.368	3.131	24	35.000	7.096	18	21	LIFR	intronic	NA
MB_SHH_T3--2	chr5:38485877	C	T	49	0.388	30	36.900	2.998	19	37.000	2.160	29	19	LIFR	intronic	NA
MB_SHH_T3--3	chr5:38485877	C	NA	62	0	62	35.887	4.680	0	0	0	56	0	LIFR	intronic	NA
MB_SHH_T3--GL	chr5:38485877	C	NA	66	0	65	36.354	3.204	0	0	0	62	0	LIFR	intronic	NA
MB_SHH_T3--1	chr5:85586898	C	NA	85	0	85	35.729	5.714	0	0	0	75	0	NBPF22P	ncRNA_intronic	NA
MB_SHH_T3--2	chr5:85586898	C	NA	123	0	123	36.358	4.882	0	0	0	115	0	NBPF22P	ncRNA_intronic	NA
MB_SHH_T3--3	chr5:85586898	C	T	143	0.420	83	37.892	2.754	60	36.067	4.936	82	55	NBPF22P	ncRNA_intronic	NA
MB_SHH_T3--GL	chr5:85586898	C	NA	95	0	95	36.716	4.788	0	0	0	87	0	NBPF22P	ncRNA_intronic	NA
MB_SHH_T3--1	chr6:167571239	C	A	21	0.190	17	36.059	2.883	4	37.500	3.317	17	4	GPR31	exonic	synonymous_SNV
MB_SHH_T3--2	chr6:167571239	C	A	39	0.051	37	35.730	5.048	2	35.000	2.828	34	2	GPR31	exonic	synonymous_SNV
MB_SHH_T3--3	chr6:167571239	C	A	54	0.019	53	35.925	4.380	1	40.000	0.000	50	1	GPR31	exonic	synonymous_SNV
MB_SHH_T3--GL	chr6:167571239	C	NA	42	0	42	35.881	3.507	0	0	0	39	0	GPR31	exonic	synonymous_SNV
MB_SHH_T3--1	chr6:170627695	A	G	39	0.231	30	34.067	6.848	9	34.889	3.822	25	8	FAM120B	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr6:170627695	A	G	81	0.123	70	35.057	5.410	10	31.900	7.310	62	7	FAM120B	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr6:170627695	A	G	97	0.134	84	34.893	4.494	13	25.154	11.718	76	6	FAM120B	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr6:170627695	A	NA	96	0	76	34.105	5.196	0	0	0	61	0	FAM120B	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr6:30671788	C	NA	16	0	16	35.562	6.110	0	0	0	15	0	MDC1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr6:30671788	C	NA	12	0	12	33.417	8.908	0	0	0	10	0	MDC1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr6:30671788	C	A	12	0.333	8	34.000	8.124	4	34.500	5.000	7	3	MDC1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr6:30671788	C	NA	42	0	42	36.714	3.118	0	0	0	41	0	MDC1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr6:30698483	C	NA	30	0	30	36.900	3.537	0	0	0	28	0	FLOT1	exonic	synonymous_SNV
MB_SHH_T3--2	chr6:30698483	C	NA	40	0	40	35.525	4.443	0	0	0	37	0	FLOT1	exonic	synonymous_SNV
MB_SHH_T3--3	chr6:30698483	C	T	30	0.533	14	34.500	4.958	16	36.500	2.733	12	16	FLOT1	exonic	synonymous_SNV
MB_SHH_T3--GL	chr6:30698483	C	NA	59	0	59	37.186	4.015	0	0	0	57	0	FLOT1	exonic	synonymous_SNV
MB_SHH_T3--1	chr6:33411424	T	NA	28	0	28	33.536	7.720	0	0	0	22	0	SYNGAP1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr6:33411424	T	NA	33	0	33	34.788	5.290	0	0	0	29	0	SYNGAP1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr6:33411424	T	C	27	0.148	23	34.739	5.840	4	36.000	2.000	19	4	SYNGAP1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr6:33411424	T	NA	45	0	44	35.659	5.673	0	0	0	40	0	SYNGAP1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr7:100608268	C	T	21	0.333	14	34.714	4.615	7	36.714	2.870	11	7	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T3--2	chr7:100608268	C	T	23	0.478	12	35.667	4.735	11	34.364	4.249	10	9	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T3--3	chr7:100608268	C	T	21	0.190	17	35.882	5.036	4	36.750	2.872	15	4	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T3--GL	chr7:100608268	C	NA	40	0	40	36.275	4.101	0	0	0	38	0	ACHE(dist=114676),MUC12(dist=4636)	intergenic	NA
MB_SHH_T3--1	chr7:20201492	A	NA	56	0	56	35.982	5.405	0	0	0	52	0	MACC1	UTR5	NA
MB_SHH_T3--2	chr7:20201492	A	NA	60	0	59	36.169	3.601	0	0	0	55	0	MACC1	UTR5	NA
MB_SHH_T3--3	chr7:20201492	A	G	74	0.365	47	36.702	2.881	27	37.074	3.951	45	25	MACC1	UTR5	NA
MB_SHH_T3--GL	chr7:20201492	A	NA	67	0	67	34.552	6.595	0	0	0	57	0	MACC1	UTR5	NA
MB_SHH_T3--1	chr8:121328211	G	C	29	0.345	19	34.421	4.586	10	37.400	2.716	17	10	COL14A1	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr8:121328211	G	C	43	0.372	27	37.148	3.122	16	38.250	2.049	26	16	COL14A1	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr8:121328211	G	NA	51	0	51	37.098	3.651	0	0	0	49	0	COL14A1	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr8:121328211	G	NA	48	0	47	36.085	5.090	0	0	0	43	0	COL14A1	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr8:48845580	C	T	42	0.667	14	36.143	4.865	28	35.857	5.148	13	26	PRKDC	exonic	unknown
MB_SHH_T3--2	chr8:48845580	C	T	37	0.541	17	36.706	2.779	20	37.300	3.262	17	19	PRKDC	exonic	unknown
MB_SHH_T3--3	chr8:48845580	C	T	38	0.500	19	35.684	4.571	19	36.263	3.246	17	18	PRKDC	exonic	unknown
MB_SHH_T3--GL	chr8:48845580	C	NA	69	0	69	35.681	4.632	0	0	0	61	0	PRKDC	exonic	unknown
MB_SHH_T3--1	chr9:135772999	T	A	56	0.232	43	29.488	9.823	13	34.385	2.987	29	12	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
MB_SHH_T3--2	chr9:135772999	T	NA	31	0	30	25.433	11.094	0	0	0	16	0	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
MB_SHH_T3--3	chr9:135772999	T	NA	30	0	29	29.862	9.822	0	0	0	19	0	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
MB_SHH_T3--GL	chr9:135772999	T	NA	46	0	46	28.283	10.297	0	0	0	27	0	TSC1(NM_000368:exon22:c.2626-2A>T,NM_001162427:exon21:c.2473-2A>T,NM_001162426:exon22:c.2623-2A>T)	splicing	NA
MB_SHH_T3--1	chr9:139996380	C	T	58	0.069	7	33.857	5.490	4	34.000	2.000	5	4	MAN1B1	intronic	NA
MB_SHH_T3--2	chr9:139996380	C	T	76	0.039	16	33.688	4.453	3	33.000	0.000	12	3	MAN1B1	intronic	NA
MB_SHH_T3--3	chr9:139996380	C	T	73	0.027	36	36.194	2.926	2	35.000	2.828	35	2	MAN1B1	intronic	NA
MB_SHH_T3--GL	chr9:139996380	C	T	138	0.022	72	36.042	3.991	3	31.000	3.464	64	2	MAN1B1	intronic	NA
MB_SHH_T3--1	chr9:140777280	G	T	56	0.196	45	35.689	5.575	11	35.545	2.018	42	11	CACNA1B	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr9:140777280	G	T	80	0.237	61	34.689	4.485	19	34.789	9.120	55	17	CACNA1B	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr9:140777280	G	T	89	0.315	61	36.098	3.714	28	36.393	3.236	56	26	CACNA1B	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr9:140777280	G	NA	151	0	151	35.046	5.657	0	0	0	136	0	CACNA1B	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr9:35618245	T	C	19	0.368	12	37.750	3.079	7	37.714	2.563	12	7	CD72	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr9:35618245	T	C	42	0.476	22	37.500	2.577	20	37.000	3.893	22	18	CD72	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr9:35618245	T	C	47	0.340	31	37.935	3.021	16	36.688	6.118	30	15	CD72	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr9:35618245	T	NA	67	0	67	37.194	2.883	0	0	0	65	0	CD72	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chr9:40702867	C	A	79	0.456	43	35.140	4.833	36	34.917	4.674	40	33	SPATA31A3	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chr9:40702867	C	A	123	0.293	87	36.172	4.373	36	34.583	5.374	83	33	SPATA31A3	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chr9:40702867	C	NA	135	0	135	35.985	3.819	0	0	0	125	0	SPATA31A3	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chr9:40702867	C	NA	168	0	168	36.262	3.942	0	0	0	163	0	SPATA31A3	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chrX:119004629	T	NA	17	0	17	33.588	6.865	0	0	0	12	0	RNF113A	exonic	nonsynonymous_SNV
MB_SHH_T3--2	chrX:119004629	T	NA	35	0	35	35.857	3.516	0	0	0	32	0	RNF113A	exonic	nonsynonymous_SNV
MB_SHH_T3--3	chrX:119004629	T	A	23	0.435	13	37.077	3.662	10	36.500	3.951	12	9	RNF113A	exonic	nonsynonymous_SNV
MB_SHH_T3--GL	chrX:119004629	T	NA	68	0	68	36.471	3.638	0	0	0	63	0	RNF113A	exonic	nonsynonymous_SNV
MB_SHH_T3--1	chrX:36156085	T	C	43	0.465	23	37.609	2.572	20	36.600	3.362	23	19	CHDC2	exonic	synonymous_SNV
MB_SHH_T3--2	chrX:36156085	T	C	40	0.575	17	38.588	1.543	23	37.217	2.392	17	23	CHDC2	exonic	synonymous_SNV
MB_SHH_T3--3	chrX:36156085	T	NA	37	0	37	35.838	3.693	0	0	0	34	0	CHDC2	exonic	synonymous_SNV
MB_SHH_T3--GL	chrX:36156085	T	NA	33	0	33	36.606	3.335	0	0	0	31	0	CHDC2	exonic	synonymous_SNV
MB_SHH_T3--1	chrX:69366453	G	T	28	0.250	21	37.095	3.315	7	36.714	2.870	20	7	IGBP1	intronic	NA
MB_SHH_T3--2	chrX:69366453	G	T	43	0.442	24	37.333	2.408	19	38.632	2.338	24	19	IGBP1	intronic	NA
MB_SHH_T3--3	chrX:69366453	G	T	57	0.368	36	35.972	4.158	21	37.238	3.375	33	20	IGBP1	intronic	NA
MB_SHH_T3--GL	chrX:69366453	G	NA	52	0	52	35.692	4.264	0	0	0	48	0	IGBP1	intronic	NA
Medulloepithelioma--1	10:103923231	T	C	37	0.216	29	35.621	7.542	8	37.875	2.642	27	8	NOLC1	UTR3	NA
Medulloepithelioma--2	10:103923231	T	NA	52	0	52	36.827	4.878	0	0	0	48	0	NOLC1	UTR3	NA
Medulloepithelioma--3	10:103923231	T	NA	27	0	27	35.889	5.033	0	0	0	25	0	NOLC1	UTR3	NA
Medulloepithelioma--4	10:103923231	T	NA	52	0	52	35.788	7.570	0	0	0	50	0	NOLC1	UTR3	NA
Medulloepithelioma--5	10:103923231	T	NA	46	0	45	35.933	6.351	0	0	0	43	0	NOLC1	UTR3	NA
Medulloepithelioma--GL	10:103923231	T	NA	47	0	47	34.979	6.707	0	0	0	42	0	NOLC1	UTR3	NA
Medulloepithelioma--1	10:104678098	A	NA	49	0	49	32.592	8.485	0	0	0	36	0	CNNM2	UTR5	NA
Medulloepithelioma--2	10:104678098	A	G	61	0.475	32	33.594	9.591	29	33.207	8.156	27	22	CNNM2	UTR5	NA
Medulloepithelioma--3	10:104678098	A	G	50	0.400	30	32.533	8.811	20	35.050	7.141	24	17	CNNM2	UTR5	NA
Medulloepithelioma--4	10:104678098	A	G	62	0.387	36	34.778	4.952	24	31.542	9.026	32	19	CNNM2	UTR5	NA
Medulloepithelioma--5	10:104678098	A	NA	52	0	51	33.980	6.845	0	0	0	43	0	CNNM2	UTR5	NA
Medulloepithelioma--GL	10:104678098	A	NA	65	0	65	34.446	6.253	0	0	0	55	0	CNNM2	UTR5	NA
Medulloepithelioma--1	10:116083092	G	NA	44	0	44	37.182	6.916	0	0	0	41	0	AFAP1L2	intronic	NA
Medulloepithelioma--2	10:116083092	G	NA	61	0	61	37.705	4.458	0	0	0	56	0	AFAP1L2	intronic	NA
Medulloepithelioma--3	10:116083092	G	NA	55	0	54	36.796	7.676	0	0	0	49	0	AFAP1L2	intronic	NA
Medulloepithelioma--4	10:116083092	G	A	60	0.300	42	37.905	5.036	18	37.611	4.654	39	16	AFAP1L2	intronic	NA
Medulloepithelioma--5	10:116083092	G	NA	40	0	40	38.025	3.662	0	0	0	39	0	AFAP1L2	intronic	NA
Medulloepithelioma--GL	10:116083092	G	NA	78	0	78	38.500	5.310	0	0	0	75	0	AFAP1L2	intronic	NA
Medulloepithelioma--1	10:27444462	G	C	38	0.632	14	36.214	4.154	24	32.958	9.985	13	21	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--2	10:27444462	G	C	49	0.449	27	35.852	4.045	22	35.364	8.622	25	19	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--3	10:27444462	G	C	36	0.667	12	35.583	4.481	24	35.125	4.153	11	23	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--4	10:27444462	G	C	61	0.410	36	34.833	7.077	25	36.320	4.819	33	21	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--5	10:27444462	G	C	46	0.391	28	33.929	9.977	18	35.389	8.912	24	17	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	10:27444462	G	NA	40	0	40	37.175	3.265	0	0	0	39	0	MASTL	exonic	nonsynonymous_SNV
Medulloepithelioma--1	11:130584944	T	G	37	0.135	32	36.969	7.028	5	36.200	1.095	30	5	C11orf44	UTR3	NA
Medulloepithelioma--2	11:130584944	T	G	35	0.057	33	37.303	5.828	2	37.000	0.000	32	2	C11orf44	UTR3	NA
Medulloepithelioma--3	11:130584944	T	NA	32	0	32	38.500	2.995	0	0	0	32	0	C11orf44	UTR3	NA
Medulloepithelioma--4	11:130584944	T	G	30	0.100	27	38.074	3.339	3	30.667	7.095	27	2	C11orf44	UTR3	NA
Medulloepithelioma--5	11:130584944	T	G	33	0.030	32	37.094	6.108	1	35.000	0.000	31	1	C11orf44	UTR3	NA
Medulloepithelioma--GL	11:130584944	T	NA	44	0	44	37.750	5.583	0	0	0	39	0	C11orf44	UTR3	NA
Medulloepithelioma--1	1:115258747	C	T	201	0.010	199	36.704	7.260	2	32.000	2.828	185	2	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:115258747	C	NA	276	0	276	36.728	7.208	0	0	0	255	0	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:115258747	C	NA	176	0	176	36.886	6.246	0	0	0	166	0	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:115258747	C	T	182	0.049	173	36.763	6.622	9	34.333	12.530	162	8	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:115258747	C	T	218	0.266	160	36.731	7.296	58	35.483	6.473	145	51	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:115258747	C	NA	226	0	226	36.588	6.660	0	0	0	205	0	NRAS	exonic	nonsynonymous_SNV
Medulloepithelioma--1	11:50147064	C	NA	48	0	48	35.312	8.598	0	0	0	43	0	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--2	11:50147064	C	NA	44	0	44	37.000	6.441	0	0	0	42	0	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--3	11:50147064	C	A	65	0.431	37	36.892	4.725	28	37.393	7.613	36	26	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--4	11:50147064	C	NA	34	0	33	37.394	3.436	0	0	0	32	0	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--5	11:50147064	C	NA	47	0	46	37.413	3.357	0	0	0	43	0	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--GL	11:50147064	C	NA	84	0	84	37.071	6.253	0	0	0	80	0	OR4C12(dist=142993),LOC441601(dist=91935)	intergenic	NA
Medulloepithelioma--1	11:55340076	T	A	98	0.429	56	36.429	6.009	42	35.929	6.740	53	37	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--2	11:55340076	T	A	119	0.378	74	36.824	3.984	45	35.689	7.058	70	39	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--3	11:55340076	T	A	129	0.527	61	34.115	8.036	68	36.971	5.331	50	64	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--4	11:55340076	T	A	114	0.246	86	35.105	8.723	28	36.250	5.317	77	26	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--5	11:55340076	T	A	113	0.009	112	36.911	5.873	1	38.000	0.000	104	1	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	11:55340076	T	NA	174	0	174	35.724	6.971	0	0	0	150	0	OR4C16	exonic	nonsynonymous_SNV
Medulloepithelioma--1	1:156712668	G	C	112	0.384	69	33.058	10.425	43	33.209	7.614	56	35	HDGF	UTR3	NA
Medulloepithelioma--2	1:156712668	G	C	91	0.418	53	35.094	7.682	38	30.895	11.062	46	29	HDGF	UTR3	NA
Medulloepithelioma--3	1:156712668	G	C	116	0.362	74	35.865	5.946	42	33.024	9.408	66	36	HDGF	UTR3	NA
Medulloepithelioma--4	1:156712668	G	C	89	0.382	55	34.455	9.643	34	35.029	6.172	48	32	HDGF	UTR3	NA
Medulloepithelioma--5	1:156712668	G	C	100	0.270	72	34.278	9.144	27	35.259	7.945	61	24	HDGF	UTR3	NA
Medulloepithelioma--GL	1:156712668	G	NA	96	0	96	35.000	7.301	0	0	0	83	0	HDGF	UTR3	NA
Medulloepithelioma--1	1:163113973	T	NA	64	0	64	38.047	4.933	0	0	0	62	0	RGS5	UTR3	NA
Medulloepithelioma--2	1:163113973	T	NA	35	0	35	37.457	6.745	0	0	0	33	0	RGS5	UTR3	NA
Medulloepithelioma--3	1:163113973	T	NA	68	0	68	37.279	7.207	0	0	0	64	0	RGS5	UTR3	NA
Medulloepithelioma--4	1:163113973	T	C	44	0.159	37	36.919	6.902	7	40.286	1.496	35	7	RGS5	UTR3	NA
Medulloepithelioma--5	1:163113973	T	NA	35	0	35	38.200	4.626	0	0	0	34	0	RGS5	UTR3	NA
Medulloepithelioma--GL	1:163113973	T	NA	55	0	55	37.527	4.492	0	0	0	52	0	RGS5	UTR3	NA
Medulloepithelioma--1	1:167817679	C	NA	36	0	36	37.111	8.081	0	0	0	34	0	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:167817679	C	NA	40	0	40	38.725	3.479	0	0	0	38	0	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:167817679	C	NA	45	0	45	38.467	3.395	0	0	0	43	0	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:167817679	C	T	39	0.026	38	37.684	3.647	1	40.000	0.000	37	1	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:167817679	C	T	50	0.200	40	37.825	3.967	10	38.300	3.199	38	10	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:167817679	C	NA	48	0	48	38.667	4.138	0	0	0	46	0	ADCY10	exonic	nonsynonymous_SNV
Medulloepithelioma--1	1:169519131	T	NA	54	0	54	36.407	7.708	0	0	0	46	0	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:169519131	T	G	47	0.021	46	37.587	5.097	1	40.000	0.000	42	1	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:169519131	T	G	67	0.284	48	37.500	4.649	19	37.947	4.339	43	18	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:169519131	T	NA	38	0	38	38.211	3.699	0	0	0	37	0	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:169519131	T	NA	37	0	37	38.081	3.647	0	0	0	36	0	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:169519131	T	NA	43	0	42	38.381	4.090	0	0	0	41	0	F5	exonic	nonsynonymous_SNV
Medulloepithelioma--1	11:70742764	A	C	33	0.394	20	36.350	9.218	13	32.769	11.054	18	10	SHANK2	intronic	NA
Medulloepithelioma--2	11:70742764	A	NA	34	0	34	38.265	3.423	0	0	0	33	0	SHANK2	intronic	NA
Medulloepithelioma--3	11:70742764	A	C	31	0.032	30	36.933	5.687	1	34.000	0.000	27	1	SHANK2	intronic	NA
Medulloepithelioma--4	11:70742764	A	NA	21	0	21	37.952	3.008	0	0	0	21	0	SHANK2	intronic	NA
Medulloepithelioma--5	11:70742764	A	NA	21	0	21	35.905	6.410	0	0	0	19	0	SHANK2	intronic	NA
Medulloepithelioma--GL	11:70742764	A	NA	40	0	40	36.275	6.425	0	0	0	35	0	SHANK2	intronic	NA
Medulloepithelioma--1	11:75062520	A	NA	47	0	47	32.681	7.921	0	0	0	36	0	ARRB1	intronic	NA
Medulloepithelioma--2	11:75062520	A	NA	76	0	76	31.921	9.970	0	0	0	57	0	ARRB1	intronic	NA
Medulloepithelioma--3	11:75062520	A	G	45	0.156	37	34.378	7.726	7	32.571	7.254	34	5	ARRB1	intronic	NA
Medulloepithelioma--4	11:75062520	A	NA	65	0	65	33.538	8.099	0	0	0	56	0	ARRB1	intronic	NA
Medulloepithelioma--5	11:75062520	A	NA	67	0	67	31.134	10.233	0	0	0	52	0	ARRB1	intronic	NA
Medulloepithelioma--GL	11:75062520	A	NA	70	0	70	32.529	8.461	0	0	0	58	0	ARRB1	intronic	NA
Medulloepithelioma--1	1:175087890	G	NA	109	0	109	35.092	5.863	0	0	0	96	0	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:175087890	G	NA	149	0	148	34.331	7.602	0	0	0	132	0	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:175087890	G	C	112	0.330	74	34.000	8.639	37	35.243	7.573	66	32	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:175087890	G	C	125	0.016	123	34.602	7.537	2	37.000	2.828	109	2	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:175087890	G	NA	148	0	148	35.399	6.022	0	0	0	128	0	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:175087890	G	NA	72	0	72	33.389	9.013	0	0	0	61	0	TNN	exonic	nonsynonymous_SNV
Medulloepithelioma--1	1:1854382	G	NA	22	0	22	34.318	8.144	0	0	0	21	0	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--2	1:1854382	G	NA	35	0	35	33.971	7.528	0	0	0	30	0	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--3	1:1854382	G	NA	28	0	28	30.250	12.542	0	0	0	21	0	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--4	1:1854382	G	T	46	0.109	41	33.854	5.969	5	31.400	16.471	33	4	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--5	1:1854382	G	T	24	0.250	18	36.500	6.336	6	28.333	15.397	17	4	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--GL	1:1854382	G	NA	33	0	33	35.152	3.768	0	0	0	30	0	TMEM52(dist=3642),KIAA1751(dist=30370)	intergenic	NA
Medulloepithelioma--1	1:20140861	G	NA	78	0	78	37.372	4.122	0	0	0	74	0	RNF186	UTR3	NA
Medulloepithelioma--2	1:20140861	G	NA	82	0	82	36.573	5.759	0	0	0	77	0	RNF186	UTR3	NA
Medulloepithelioma--3	1:20140861	G	NA	52	0	52	34.750	9.278	0	0	0	44	0	RNF186	UTR3	NA
Medulloepithelioma--4	1:20140861	G	NA	73	0	73	36.904	5.588	0	0	0	69	0	RNF186	UTR3	NA
Medulloepithelioma--5	1:20140861	G	T	92	0.152	78	36.654	6.124	14	37.071	3.362	74	14	RNF186	UTR3	NA
Medulloepithelioma--GL	1:20140861	G	NA	82	0	82	35.280	7.103	0	0	0	75	0	RNF186	UTR3	NA
Medulloepithelioma--1	1:20931488	C	NA	90	0	90	36.311	5.442	0	0	0	83	0	CDA	exonic	synonymous_SNV
Medulloepithelioma--2	1:20931488	C	NA	124	0	124	36.847	5.210	0	0	0	117	0	CDA	exonic	synonymous_SNV
Medulloepithelioma--3	1:20931488	C	T	74	0.311	51	36.471	5.780	23	37.565	3.145	47	23	CDA	exonic	synonymous_SNV
Medulloepithelioma--4	1:20931488	C	NA	101	0	100	35.850	8.216	0	0	0	93	0	CDA	exonic	synonymous_SNV
Medulloepithelioma--5	1:20931488	C	NA	105	0	104	35.115	7.652	0	0	0	93	0	CDA	exonic	synonymous_SNV
Medulloepithelioma--GL	1:20931488	C	NA	112	0	112	36.455	5.806	0	0	0	107	0	CDA	exonic	synonymous_SNV
Medulloepithelioma--1	1:237921010	A	G	72	0.014	71	37.746	4.813	1	39.000	0.000	67	1	RYR2	exonic	synonymous_SNV
Medulloepithelioma--2	1:237921010	A	G	47	0.021	46	37.239	7.442	1	41.000	0.000	43	1	RYR2	exonic	synonymous_SNV
Medulloepithelioma--3	1:237921010	A	NA	73	0	73	38.986	4.791	0	0	0	72	0	RYR2	exonic	synonymous_SNV
Medulloepithelioma--4	1:237921010	A	G	43	0.093	38	38.579	2.872	4	38.750	3.304	37	4	RYR2	exonic	synonymous_SNV
Medulloepithelioma--5	1:237921010	A	G	63	0.413	37	38.405	3.708	26	38.385	3.534	36	25	RYR2	exonic	synonymous_SNV
Medulloepithelioma--GL	1:237921010	A	NA	64	0	64	37.281	6.057	0	0	0	60	0	RYR2	exonic	synonymous_SNV
Medulloepithelioma--1	1:248202439	C	NA	224	0	222	36.572	6.279	0	0	0	204	0	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:248202439	C	NA	229	0	228	36.382	6.122	0	0	0	207	0	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:248202439	C	A	223	0.229	172	36.756	5.557	51	35.804	7.566	160	46	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:248202439	C	NA	203	0	203	36.749	6.446	0	0	0	187	0	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:248202439	C	NA	279	0	277	36.625	5.259	0	0	0	256	0	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:248202439	C	NA	192	0	192	36.010	6.705	0	0	0	170	0	OR2L2	exonic	nonsynonymous_SNV
Medulloepithelioma--1	12:6426453	G	C	79	0.380	49	36.204	6.208	30	36.933	6.384	47	29	PLEKHG6	intronic	NA
Medulloepithelioma--2	12:6426453	G	C	145	0.324	98	35.908	4.591	47	36.362	6.074	89	46	PLEKHG6	intronic	NA
Medulloepithelioma--3	12:6426453	G	C	106	0.387	65	35.677	7.054	41	36.317	6.467	58	39	PLEKHG6	intronic	NA
Medulloepithelioma--4	12:6426453	G	C	123	0.325	82	36.488	4.223	40	37.450	3.137	75	39	PLEKHG6	intronic	NA
Medulloepithelioma--5	12:6426453	G	C	98	0.408	58	36.034	6.921	40	36.500	5.598	50	38	PLEKHG6	intronic	NA
Medulloepithelioma--GL	12:6426453	G	NA	85	0	84	36.464	6.159	0	0	0	78	0	PLEKHG6	intronic	NA
Medulloepithelioma--1	13:33681058	C	A	78	0.410	45	35.311	7.781	32	36.438	7.202	40	30	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--2	13:33681058	C	A	103	0.398	62	37.468	3.836	41	38.122	2.830	59	41	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--3	13:33681058	C	A	74	0.459	40	35.900	8.320	34	36.941	5.169	36	31	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--4	13:33681058	C	A	78	0.513	38	37.711	3.376	40	37.700	3.398	37	39	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--5	13:33681058	C	A	60	0.383	37	37.270	4.141	23	36.783	4.441	36	22	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	13:33681058	C	NA	83	0	83	36.699	4.848	0	0	0	79	0	STARD13	exonic	nonsynonymous_SNV
Medulloepithelioma--1	13:35731377	G	C	40	0.525	19	37.526	4.730	21	38.667	2.689	17	21	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--2	13:35731377	G	C	22	0.500	11	35.000	11.296	11	36.818	4.167	10	10	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--3	13:35731377	G	C	36	0.389	22	38.182	3.096	14	36.857	4.258	22	14	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--4	13:35731377	G	C	21	0.476	11	38.818	2.316	10	34.500	11.549	11	9	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--5	13:35731377	G	C	44	0.455	24	35.875	7.969	20	35.650	9.901	22	17	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	13:35731377	G	NA	54	0	54	37.056	5.967	0	0	0	52	0	NBEA	exonic	nonsynonymous_SNV
Medulloepithelioma--1	13:36828099	G	A	35	0.171	29	39.310	2.392	6	34.333	2.582	29	6	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--2	13:36828099	G	A	31	0.065	28	38.107	6.718	2	35.500	6.364	26	2	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--3	13:36828099	G	A	24	0.083	22	38.136	5.825	2	32.500	2.121	20	2	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--4	13:36828099	G	A	22	0.045	21	39.333	2.536	1	38.000	0.000	21	1	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--5	13:36828099	G	A	26	0.077	24	38.125	5.236	2	36.000	7.071	23	2	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--GL	13:36828099	G	NA	33	0	33	38.333	5.266	0	0	0	30	0	CCDC169,CCDC169-SOHLH2	intronic	NA
Medulloepithelioma--1	1:36888302	C	NA	31	0	31	35.839	6.890	0	0	0	30	0	OSCP1	intronic	NA
Medulloepithelioma--2	1:36888302	C	NA	30	0	30	35.467	6.907	0	0	0	26	0	OSCP1	intronic	NA
Medulloepithelioma--3	1:36888302	C	NA	28	0	27	33.074	10.164	0	0	0	21	0	OSCP1	intronic	NA
Medulloepithelioma--4	1:36888302	C	T	28	0.179	23	37.304	3.710	5	33.000	3.674	21	4	OSCP1	intronic	NA
Medulloepithelioma--5	1:36888302	C	NA	27	0	27	37.037	3.425	0	0	0	27	0	OSCP1	intronic	NA
Medulloepithelioma--GL	1:36888302	C	NA	35	0	35	34.714	5.021	0	0	0	29	0	OSCP1	intronic	NA
Medulloepithelioma--1	13:79911237	C	G	79	0.544	35	35.457	6.199	43	35.395	8.685	31	38	RBM26	exonic	synonymous_SNV
Medulloepithelioma--2	13:79911237	C	G	95	0.558	42	36.429	5.227	53	35.660	9.070	40	48	RBM26	exonic	synonymous_SNV
Medulloepithelioma--3	13:79911237	C	G	91	0.538	42	35.833	6.116	49	35.041	7.932	37	43	RBM26	exonic	synonymous_SNV
Medulloepithelioma--4	13:79911237	C	G	104	0.413	60	36.000	8.053	43	34.791	7.879	54	35	RBM26	exonic	synonymous_SNV
Medulloepithelioma--5	13:79911237	C	G	114	0.500	57	33.526	11.168	57	34.947	8.845	48	51	RBM26	exonic	synonymous_SNV
Medulloepithelioma--GL	13:79911237	C	NA	131	0	131	36.313	6.772	0	0	0	122	0	RBM26	exonic	synonymous_SNV
Medulloepithelioma--1	14:106363758	G	T	30	0.567	13	37.923	4.153	17	36.176	6.044	12	15	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--2	14:106363758	G	T	60	0.533	28	36.321	4.907	32	35.094	7.630	24	28	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--3	14:106363758	G	T	38	0.553	17	35.765	9.418	21	35.190	8.588	16	19	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--4	14:106363758	G	T	51	0.510	25	34.480	7.183	26	35.154	8.211	21	23	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--5	14:106363758	G	T	46	0.435	26	31.577	10.045	20	36.150	8.431	20	19	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--GL	14:106363758	G	NA	43	0	43	35.907	7.117	0	0	0	40	0	ELK2AP(dist=224614),KIAA0125(dist=20080)	intergenic	NA
Medulloepithelioma--1	1:45272204	G	C	42	0.167	35	23.514	17.132	7	24.000	15.089	21	5	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--2	1:45272204	G	NA	47	0	46	23.652	15.201	0	0	0	26	0	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--3	1:45272204	G	C	48	0.021	47	23.660	14.885	1	34.000	0.000	28	1	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--4	1:45272204	G	NA	55	0	52	26.115	13.929	0	0	0	31	0	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--5	1:45272204	G	NA	54	0	53	27.151	13.451	0	0	0	32	0	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	1:45272204	G	NA	46	0	45	25.533	14.651	0	0	0	27	0	TCTEX1D4	exonic	nonsynonymous_SNV
Medulloepithelioma--1	14:60622944	A	G	74	0.095	67	37.851	4.360	7	37.000	5.260	64	6	DHRS7	intronic	NA
Medulloepithelioma--2	14:60622944	A	G	62	0.129	54	38.944	2.929	8	36.500	7.251	53	7	DHRS7	intronic	NA
Medulloepithelioma--3	14:60622944	A	G	69	0.203	55	37.909	6.974	14	36.929	6.569	52	12	DHRS7	intronic	NA
Medulloepithelioma--4	14:60622944	A	G	56	0.107	50	38.520	3.265	6	36.167	8.612	49	5	DHRS7	intronic	NA
Medulloepithelioma--5	14:60622944	A	G	56	0.071	52	37.962	4.356	4	30.000	18.744	51	3	DHRS7	intronic	NA
Medulloepithelioma--GL	14:60622944	A	NA	100	0	98	37.776	4.574	0	0	0	94	0	DHRS7	intronic	NA
Medulloepithelioma--1	15:25336938	G	NA	12	0	12	34.083	10.867	0	0	0	11	0	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--2	15:25336938	G	NA	27	0	27	35.778	7.018	0	0	0	24	0	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--3	15:25336938	G	NA	21	0	21	35.619	8.611	0	0	0	19	0	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--4	15:25336938	G	A	24	0.083	22	36.318	5.277	2	39.500	0.707	20	2	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--5	15:25336938	G	A	26	0.269	19	36.737	6.615	7	37.429	3.047	17	7	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--GL	15:25336938	G	NA	38	0	38	36.632	4.727	0	0	0	35	0	SNORD116-23	ncRNA_exonic	NA
Medulloepithelioma--1	15:39876066	C	T	33	0.152	28	35.000	6.739	5	34.400	1.140	25	5	THBS1	intronic	NA
Medulloepithelioma--2	15:39876066	C	T	39	0.051	37	33.892	8.462	2	33.500	3.536	31	2	THBS1	intronic	NA
Medulloepithelioma--3	15:39876066	C	T	40	0.075	37	35.162	8.968	3	32.667	2.309	34	3	THBS1	intronic	NA
Medulloepithelioma--4	15:39876066	C	NA	27	0	26	36.346	3.794	0	0	0	25	0	THBS1	intronic	NA
Medulloepithelioma--5	15:39876066	C	T	22	0.091	20	36.900	3.655	2	34.000	0.000	19	2	THBS1	intronic	NA
Medulloepithelioma--GL	15:39876066	C	NA	42	0	42	35.857	5.607	0	0	0	38	0	THBS1	intronic	NA
Medulloepithelioma--1	1:55013914	C	NA	30	0	28	33.393	7.490	0	0	0	21	0	ACOT11	UTR5	NA
Medulloepithelioma--2	1:55013914	C	NA	46	0	46	31.957	9.141	0	0	0	33	0	ACOT11	UTR5	NA
Medulloepithelioma--3	1:55013914	C	A	24	0.417	14	29.643	12.738	10	28.800	13.198	9	7	ACOT11	UTR5	NA
Medulloepithelioma--4	1:55013914	C	NA	43	0	43	34.372	5.644	0	0	0	37	0	ACOT11	UTR5	NA
Medulloepithelioma--5	1:55013914	C	NA	33	0	33	31.576	9.641	0	0	0	24	0	ACOT11	UTR5	NA
Medulloepithelioma--GL	1:55013914	C	NA	45	0	45	31.089	10.409	0	0	0	34	0	ACOT11	UTR5	NA
Medulloepithelioma--1	15:56385170	A	G	33	0.091	30	36.533	6.801	3	38.333	3.786	27	3	RFX7	UTR3	NA
Medulloepithelioma--2	15:56385170	A	G	27	0.074	25	36.440	4.823	2	40.000	1.414	23	2	RFX7	UTR3	NA
Medulloepithelioma--3	15:56385170	A	NA	44	0	44	37.636	3.178	0	0	0	42	0	RFX7	UTR3	NA
Medulloepithelioma--4	15:56385170	A	G	26	0.192	21	36.238	6.371	5	38.400	3.975	20	5	RFX7	UTR3	NA
Medulloepithelioma--5	15:56385170	A	G	35	0.429	20	38.650	2.323	15	37.667	3.109	20	15	RFX7	UTR3	NA
Medulloepithelioma--GL	15:56385170	A	NA	62	0	62	37.177	4.268	0	0	0	58	0	RFX7	UTR3	NA
Medulloepithelioma--1	16:1031305	A	NA	17	0	12	18.667	16.389	0	0	0	4	0	SOX8	upstream	NA
Medulloepithelioma--2	16:1031305	A	T	33	0.121	28	30.536	9.946	4	28.250	18.007	20	3	SOX8	upstream	NA
Medulloepithelioma--3	16:1031305	A	T	29	0.241	20	21.250	15.691	7	36.714	3.251	8	7	SOX8	upstream	NA
Medulloepithelioma--4	16:1031305	A	T	37	0.081	33	28.242	13.332	3	33.667	0.577	22	3	SOX8	upstream	NA
Medulloepithelioma--5	16:1031305	A	T	37	0.081	32	27.500	11.840	3	34.667	1.528	18	3	SOX8	upstream	NA
Medulloepithelioma--GL	16:1031305	A	NA	45	0	42	31.524	10.588	0	0	0	31	0	SOX8	upstream	NA
Medulloepithelioma--1	16:24817050	T	G	48	0.500	24	38.208	3.349	24	37.750	2.707	23	24	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--2	16:24817050	T	G	65	0.569	28	37.464	4.185	37	35.649	5.154	27	33	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--3	16:24817050	T	G	55	0.418	32	35.000	9.165	23	36.261	8.400	29	21	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--4	16:24817050	T	G	53	0.642	19	37.158	3.287	34	36.618	5.592	19	32	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--5	16:24817050	T	G	59	0.424	34	36.971	5.024	25	36.680	5.258	31	24	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--GL	16:24817050	T	NA	72	0	72	36.931	6.029	0	0	0	67	0	TNRC6A	exonic	stopgain_SNV
Medulloepithelioma--1	16:33410494	A	T	35	0.229	27	37.889	3.423	8	38.875	2.850	26	8	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--2	16:33410494	A	T	29	0.069	26	37.692	3.296	2	38.500	0.707	26	2	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--3	16:33410494	A	T	26	0.115	23	36.565	4.888	3	37.000	5.292	21	3	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--4	16:33410494	A	T	22	0.182	18	34.889	12.247	4	38.250	2.217	16	4	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--5	16:33410494	A	T	24	0.208	19	38.053	2.656	5	38.800	2.950	19	5	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--GL	16:33410494	A	NA	38	0	38	36.711	3.813	0	0	0	37	0	LOC390705(dist=111792),RNU6-76P(dist=53013)	intergenic	NA
Medulloepithelioma--1	16:4256982	C	T	92	0.500	45	32.178	10.508	46	32.348	9.812	37	38	SRL	intronic	NA
Medulloepithelioma--2	16:4256982	C	T	101	0.426	58	30.034	11.943	43	31.907	11.051	40	34	SRL	intronic	NA
Medulloepithelioma--3	16:4256982	C	T	78	0.487	40	32.175	8.025	38	33.526	7.735	29	32	SRL	intronic	NA
Medulloepithelioma--4	16:4256982	C	T	102	0.461	55	33.891	9.465	47	32.298	8.485	47	35	SRL	intronic	NA
Medulloepithelioma--5	16:4256982	C	T	97	0.505	48	33.625	9.108	49	33.102	8.656	37	41	SRL	intronic	NA
Medulloepithelioma--GL	16:4256982	C	NA	98	0	97	31.474	9.897	0	0	0	75	0	SRL	intronic	NA
Medulloepithelioma--1	16:75665562	C	T	135	0.089	122	36.672	5.889	12	33.833	10.373	113	11	KARS	intronic	NA
Medulloepithelioma--2	16:75665562	C	T	149	0.013	147	36.435	6.150	2	38.500	0.707	139	2	KARS	intronic	NA
Medulloepithelioma--3	16:75665562	C	NA	96	0	96	36.479	5.287	0	0	0	91	0	KARS	intronic	NA
Medulloepithelioma--4	16:75665562	C	T	147	0.143	126	35.698	7.458	21	34.381	9.972	117	17	KARS	intronic	NA
Medulloepithelioma--5	16:75665562	C	T	117	0.359	75	36.200	6.405	42	36.024	7.357	68	38	KARS	intronic	NA
Medulloepithelioma--GL	16:75665562	C	NA	149	0	149	36.188	7.171	0	0	0	137	0	KARS	intronic	NA
Medulloepithelioma--1	16:87678092	C	G	103	0.417	60	33.683	7.683	43	32.186	11.931	53	33	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--2	16:87678092	C	G	156	0.481	81	33.407	9.383	75	35.013	7.799	69	69	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--3	16:87678092	C	G	120	0.475	63	33.619	7.877	57	33.930	9.654	54	49	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--4	16:87678092	C	G	128	0.234	98	34.296	8.142	30	34.067	7.311	86	27	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--5	16:87678092	C	G	153	0.033	148	34.615	6.282	5	35.200	3.633	127	5	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	16:87678092	C	NA	134	0	134	33.813	9.073	0	0	0	116	0	JPH3	exonic	nonsynonymous_SNV
Medulloepithelioma--1	16:88804927	C	A	39	0.154	33	29.364	14.694	6	33.667	1.366	26	6	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--2	16:88804927	C	A	65	0.046	62	36.403	6.176	3	34.333	0.577	58	3	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--3	16:88804927	C	NA	38	0	36	33.806	9.217	0	0	0	30	0	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--4	16:88804927	C	A	60	0.017	59	33.949	8.677	1	31.000	0.000	50	1	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--5	16:88804927	C	A	54	0.037	52	33.327	10.205	2	30.500	0.707	43	2	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--GL	16:88804927	C	NA	44	0	44	36.364	6.373	0	0	0	42	0	RP5-1142A6.2	ncRNA_exonic	NA
Medulloepithelioma--1	1:71477390	T	C	44	0.455	24	37.417	5.524	20	38.400	2.798	22	20	PTGER3	UTR3	NA
Medulloepithelioma--2	1:71477390	T	C	28	0.536	13	35.769	4.585	15	37.133	4.764	12	14	PTGER3	UTR3	NA
Medulloepithelioma--3	1:71477390	T	C	56	0.607	22	36.636	6.687	34	38.118	3.301	21	33	PTGER3	UTR3	NA
Medulloepithelioma--4	1:71477390	T	C	23	0.304	16	38.062	3.108	7	37.714	3.946	16	7	PTGER3	UTR3	NA
Medulloepithelioma--5	1:71477390	T	NA	40	0	40	37.350	3.655	0	0	0	40	0	PTGER3	UTR3	NA
Medulloepithelioma--GL	1:71477390	T	NA	56	0	56	37.000	4.702	0	0	0	54	0	PTGER3	UTR3	NA
Medulloepithelioma--1	17:3214017	G	A	111	0.261	82	36.598	5.564	29	35.586	6.549	75	27	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--2	17:3214017	G	A	192	0.328	128	36.414	5.623	63	35.825	5.336	120	58	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--3	17:3214017	G	A	174	0.385	107	34.897	8.789	67	36.284	5.570	94	63	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--4	17:3214017	G	A	195	0.272	142	35.380	7.464	53	34.302	6.860	124	47	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--5	17:3214017	G	A	166	0.012	163	35.515	7.760	2	36.000	0.000	144	2	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--GL	17:3214017	G	NA	148	0	147	34.701	8.636	0	0	0	127	0	OR3A4P	ncRNA_exonic	NA
Medulloepithelioma--1	17:34183954	C	NA	32	0	32	36.969	5.051	0	0	0	31	0	C17orf66	intronic	NA
Medulloepithelioma--2	17:34183954	C	NA	60	0	59	37.271	4.653	0	0	0	55	0	C17orf66	intronic	NA
Medulloepithelioma--3	17:34183954	C	NA	48	0	48	35.938	7.262	0	0	0	42	0	C17orf66	intronic	NA
Medulloepithelioma--4	17:34183954	C	G	45	0.333	30	37.300	3.888	15	36.000	4.957	29	14	C17orf66	intronic	NA
Medulloepithelioma--5	17:34183954	C	NA	41	0	41	36.878	4.849	0	0	0	38	0	C17orf66	intronic	NA
Medulloepithelioma--GL	17:34183954	C	NA	50	0	50	35.840	7.078	0	0	0	43	0	C17orf66	intronic	NA
Medulloepithelioma--1	17:39031029	T	NA	36	0	36	37.611	3.893	0	0	0	34	0	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--2	17:39031029	T	G	38	0.605	15	38.133	3.583	23	37.000	6.216	15	20	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--3	17:39031029	T	G	75	0.640	27	39.519	1.909	48	37.833	4.478	27	45	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--4	17:39031029	T	G	43	0.488	22	38.591	2.840	21	36.571	8.097	22	19	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--5	17:39031029	T	NA	23	0	23	39.174	2.622	0	0	0	23	0	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--GL	17:39031029	T	NA	58	0	58	37.431	4.369	0	0	0	55	0	KRT12(dist=7567),KRT20(dist=1112)	intergenic	NA
Medulloepithelioma--1	17:42266364	G	NA	50	0	49	35.571	6.429	0	0	0	44	0	TMUB2	UTR5	NA
Medulloepithelioma--2	17:42266364	G	A	89	0.562	38	35.211	7.338	50	37.240	3.617	34	48	TMUB2	UTR5	NA
Medulloepithelioma--3	17:42266364	G	A	71	0.620	27	37.037	4.561	44	37.250	3.755	24	43	TMUB2	UTR5	NA
Medulloepithelioma--4	17:42266364	G	A	74	0.446	41	37.122	5.767	33	37.667	3.870	39	31	TMUB2	UTR5	NA
Medulloepithelioma--5	17:42266364	G	NA	73	0	73	36.151	7.509	0	0	0	66	0	TMUB2	UTR5	NA
Medulloepithelioma--GL	17:42266364	G	NA	61	0	61	36.344	6.418	0	0	0	56	0	TMUB2	UTR5	NA
Medulloepithelioma--1	17:79425169	C	NA	28	0	28	31.893	10.496	0	0	0	21	0	BAHCC1	intronic	NA
Medulloepithelioma--2	17:79425169	C	NA	68	0	68	35.029	7.119	0	0	0	61	0	BAHCC1	intronic	NA
Medulloepithelioma--3	17:79425169	C	NA	38	0	37	32.486	8.962	0	0	0	30	0	BAHCC1	intronic	NA
Medulloepithelioma--4	17:79425169	C	A	56	0.071	52	35.135	8.756	4	38.000	1.414	47	4	BAHCC1	intronic	NA
Medulloepithelioma--5	17:79425169	C	A	48	0.312	33	37.061	4.330	15	37.333	5.753	31	14	BAHCC1	intronic	NA
Medulloepithelioma--GL	17:79425169	C	NA	34	0	34	35.000	7.006	0	0	0	31	0	BAHCC1	intronic	NA
Medulloepithelioma--1	18:28646834	T	C	22	0.409	13	37.385	2.931	9	37.333	5.874	13	8	DSC2	UTR3	NA
Medulloepithelioma--2	18:28646834	T	C	19	0.684	6	39.000	1.265	13	38.385	2.815	6	13	DSC2	UTR3	NA
Medulloepithelioma--3	18:28646834	T	C	35	0.486	18	37.833	5.426	17	39.176	2.270	16	17	DSC2	UTR3	NA
Medulloepithelioma--4	18:28646834	T	C	14	0.429	8	37.375	2.446	6	38.667	1.366	8	6	DSC2	UTR3	NA
Medulloepithelioma--5	18:28646834	T	C	26	0.308	18	36.056	9.078	8	33.000	12.806	17	7	DSC2	UTR3	NA
Medulloepithelioma--GL	18:28646834	T	NA	34	0	34	37.676	5.740	0	0	0	32	0	DSC2	UTR3	NA
Medulloepithelioma--1	1:85563357	T	A	37	0.568	16	37.000	4.397	21	38.429	2.315	15	21	WDR63	intronic	NA
Medulloepithelioma--2	1:85563357	T	NA	38	0	38	37.132	5.956	0	0	0	35	0	WDR63	intronic	NA
Medulloepithelioma--3	1:85563357	T	NA	44	0	44	39.000	2.178	0	0	0	44	0	WDR63	intronic	NA
Medulloepithelioma--4	1:85563357	T	NA	29	0	29	37.310	5.471	0	0	0	27	0	WDR63	intronic	NA
Medulloepithelioma--5	1:85563357	T	NA	29	0	29	38.448	4.256	0	0	0	26	0	WDR63	intronic	NA
Medulloepithelioma--GL	1:85563357	T	NA	55	0	55	36.218	7.716	0	0	0	51	0	WDR63	intronic	NA
Medulloepithelioma--1	19:15567258	C	A	64	0.016	63	35.556	8.600	1	33.000	0.000	56	1	RASAL3	intronic	NA
Medulloepithelioma--2	19:15567258	C	A	124	0.306	86	36.953	6.801	38	35.263	7.285	80	33	RASAL3	intronic	NA
Medulloepithelioma--3	19:15567258	C	A	70	0.357	45	37.422	6.754	25	36.440	6.111	41	21	RASAL3	intronic	NA
Medulloepithelioma--4	19:15567258	C	A	107	0.252	80	37.075	7.587	27	33.667	9.954	76	24	RASAL3	intronic	NA
Medulloepithelioma--5	19:15567258	C	NA	111	0	111	36.288	5.362	0	0	0	105	0	RASAL3	intronic	NA
Medulloepithelioma--GL	19:15567258	C	NA	70	0	70	37.371	6.793	0	0	0	68	0	RASAL3	intronic	NA
Medulloepithelioma--1	19:18576306	T	C	76	0.303	53	33.811	8.304	23	36.435	3.715	45	23	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--2	19:18576306	T	C	138	0.196	111	33.685	7.474	27	34.889	7.454	93	25	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--3	19:18576306	T	C	80	0.312	55	35.145	6.445	25	31.680	9.146	50	19	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--4	19:18576306	T	C	135	0.200	108	33.759	7.471	27	33.741	7.393	85	24	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--5	19:18576306	T	NA	156	0	156	35.455	5.541	0	0	0	141	0	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	19:18576306	T	NA	78	0	77	33.909	8.113	0	0	0	67	0	ELL	exonic	nonsynonymous_SNV
Medulloepithelioma--1	19:41095117	A	T	43	0.209	33	32.697	8.259	9	26.667	10.817	23	5	SHKBP1	intronic	NA
Medulloepithelioma--2	19:41095117	A	T	77	0.195	60	33.417	10.055	15	24.600	11.173	48	8	SHKBP1	intronic	NA
Medulloepithelioma--3	19:41095117	A	T	22	0.273	16	33.250	9.263	6	27.667	12.817	13	5	SHKBP1	intronic	NA
Medulloepithelioma--4	19:41095117	A	T	56	0.125	48	34.625	7.797	7	27.286	12.120	44	5	SHKBP1	intronic	NA
Medulloepithelioma--5	19:41095117	A	T	70	0.186	57	34.316	8.367	13	25.615	11.906	48	7	SHKBP1	intronic	NA
Medulloepithelioma--GL	19:41095117	A	NA	47	0	46	31.783	8.208	0	0	0	34	0	SHKBP1	intronic	NA
Medulloepithelioma--1	19:41281599	G	NA	102	0	102	34.324	7.560	0	0	0	91	0	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--2	19:41281599	G	NA	227	0	226	34.301	7.513	0	0	0	198	0	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--3	19:41281599	G	C	116	0.388	71	33.873	8.220	45	34.800	8.849	62	41	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--4	19:41281599	G	NA	175	0	175	35.520	5.880	0	0	0	163	0	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--5	19:41281599	G	NA	201	0	201	35.134	5.574	0	0	0	180	0	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--GL	19:41281599	G	NA	123	0	123	34.772	9.026	0	0	0	109	0	MIA-RAB4B	ncRNA_intronic	NA
Medulloepithelioma--1	19:41601678	T	C	117	0.427	67	36.119	4.711	50	37.340	6.355	62	48	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--2	19:41601678	T	C	203	0.369	128	35.250	7.080	75	37.213	4.183	115	71	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--3	19:41601678	T	C	105	0.419	60	35.867	5.964	44	37.682	3.601	55	42	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--4	19:41601678	T	C	211	0.332	139	35.144	6.797	70	37.186	5.575	125	67	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--5	19:41601678	T	C	197	0.350	128	36.539	5.224	69	37.043	6.187	119	64	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--GL	19:41601678	T	NA	89	0	88	34.705	6.345	0	0	0	76	0	CYP2A13	exonic	synonymous_SNV
Medulloepithelioma--1	19:42873105	C	G	121	0.008	120	33.850	8.495	1	41.000	0.000	103	1	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--2	19:42873105	C	G	210	0.305	146	34.308	9.199	64	35.094	5.784	124	57	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--3	19:42873105	C	G	116	0.457	61	34.131	7.639	53	32.660	8.707	48	45	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--4	19:42873105	C	G	206	0.233	158	34.411	7.967	48	32.562	10.543	140	40	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--5	19:42873105	C	G	221	0.009	219	33.941	8.296	2	35.500	0.707	180	2	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	19:42873105	C	NA	136	0	136	33.676	9.338	0	0	0	116	0	MEGF8	exonic	nonsynonymous_SNV
Medulloepithelioma--1	19:46273928	G	A	65	0.092	59	32.678	9.518	6	36.667	2.422	49	6	DMPK	intronic	NA
Medulloepithelioma--2	19:46273928	G	A	105	0.305	73	32.411	9.776	32	32.000	9.951	61	24	DMPK	intronic	NA
Medulloepithelioma--3	19:46273928	G	A	73	0.493	37	32.405	8.633	36	33.056	8.744	32	31	DMPK	intronic	NA
Medulloepithelioma--4	19:46273928	G	A	108	0.361	68	34.397	7.649	39	33.410	7.246	60	33	DMPK	intronic	NA
Medulloepithelioma--5	19:46273928	G	A	127	0.346	81	31.160	11.237	44	31.455	10.476	65	37	DMPK	intronic	NA
Medulloepithelioma--GL	19:46273928	G	NA	88	0	87	34.632	8.176	0	0	0	77	0	DMPK	intronic	NA
Medulloepithelioma--1	19:46320150	T	G	55	0.455	30	30.300	10.885	25	32.920	9.695	22	23	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--2	19:46320150	T	G	78	0.372	49	31.755	10.459	29	31.172	10.883	39	24	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--3	19:46320150	T	G	33	0.303	23	28.826	13.313	10	31.700	7.258	16	7	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--4	19:46320150	T	G	79	0.329	52	32.250	8.227	26	32.962	9.747	42	22	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--5	19:46320150	T	G	89	0.449	48	33.271	7.685	40	32.075	9.515	39	33	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	19:46320150	T	NA	46	0	46	29.978	10.059	0	0	0	33	0	SYMPK	exonic	nonsynonymous_SNV
Medulloepithelioma--1	19:51961391	G	T	174	0.086	159	36.371	6.082	15	35.133	9.702	149	14	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--2	19:51961391	G	T	234	0.265	172	35.942	6.058	62	35.984	8.477	156	58	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--3	19:51961391	G	T	108	0.417	63	35.571	7.084	45	34.022	8.103	56	39	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--4	19:51961391	G	T	248	0.294	175	35.623	7.956	73	37.000	4.469	155	71	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--5	19:51961391	G	T	244	0.279	176	36.284	5.778	68	36.971	6.210	161	63	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	19:51961391	G	NA	165	0	165	35.261	7.931	0	0	0	148	0	SIGLEC8	exonic	nonsynonymous_SNV
Medulloepithelioma--1	19:7535688	G	T	97	0.412	56	32.071	10.782	40	33.950	8.866	43	34	ARHGEF18	UTR3	NA
Medulloepithelioma--2	19:7535688	G	T	163	0.380	101	34.149	9.299	62	36.048	5.565	90	60	ARHGEF18	UTR3	NA
Medulloepithelioma--3	19:7535688	G	T	73	0.137	63	32.921	10.383	10	30.700	15.671	48	7	ARHGEF18	UTR3	NA
Medulloepithelioma--4	19:7535688	G	T	189	0.286	135	33.585	8.709	54	35.426	7.475	118	50	ARHGEF18	UTR3	NA
Medulloepithelioma--5	19:7535688	G	T	162	0.321	110	35.091	7.651	52	36.000	6.164	99	50	ARHGEF18	UTR3	NA
Medulloepithelioma--GL	19:7535688	G	NA	126	0	126	34.857	6.946	0	0	0	114	0	ARHGEF18	UTR3	NA
Medulloepithelioma--1	20:37195742	A	NA	91	0	91	36.110	6.295	0	0	0	84	0	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--2	20:37195742	A	T	75	0.453	41	36.976	4.344	34	37.824	3.424	37	33	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--3	20:37195742	A	T	105	0.505	52	36.346	4.686	53	37.396	4.369	48	50	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--4	20:37195742	A	T	73	0.356	47	35.447	7.046	26	37.385	4.215	42	24	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--5	20:37195742	A	NA	108	0	108	36.296	5.857	0	0	0	95	0	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	20:37195742	A	NA	157	0	157	37.350	5.109	0	0	0	147	0	RALGAPB	exonic	nonsynonymous_SNV
Medulloepithelioma--1	20:50005043	G	A	25	0.160	21	34.381	7.697	4	34.250	2.500	19	4	NFATC2	UTR3	NA
Medulloepithelioma--2	20:50005043	G	NA	32	0	30	35.567	7.833	0	0	0	26	0	NFATC2	UTR3	NA
Medulloepithelioma--3	20:50005043	G	A	36	0.028	35	34.114	7.914	1	31.000	0.000	31	1	NFATC2	UTR3	NA
Medulloepithelioma--4	20:50005043	G	A	29	0.103	26	33.423	7.941	3	32.333	1.528	17	3	NFATC2	UTR3	NA
Medulloepithelioma--5	20:50005043	G	A	21	0.095	19	36.737	5.616	2	34.500	0.707	18	2	NFATC2	UTR3	NA
Medulloepithelioma--GL	20:50005043	G	NA	46	0	45	35.044	6.875	0	0	0	39	0	NFATC2	UTR3	NA
Medulloepithelioma--1	20:52773728	C	G	68	0.368	43	34.977	5.591	25	35.880	8.628	37	23	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--2	20:52773728	C	G	87	0.437	49	34.469	8.277	38	36.158	6.541	43	37	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--3	20:52773728	C	G	74	0.459	40	35.325	6.859	34	36.794	6.628	34	33	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--4	20:52773728	C	G	77	0.351	50	32.840	8.520	27	36.222	4.079	41	24	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--5	20:52773728	C	G	93	0.398	56	34.786	6.899	37	34.514	10.276	49	33	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	20:52773728	C	NA	80	0	80	34.237	8.855	0	0	0	70	0	CYP24A1	exonic	nonsynonymous_SNV
Medulloepithelioma--1	20:57266786	T	A	138	0.051	130	25.585	15.749	7	20.429	18.356	83	3	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--2	20:57266786	T	A	162	0.025	156	26.885	15.601	4	29.250	18.428	107	3	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--3	20:57266786	T	NA	198	0	196	22.622	16.381	0	0	0	108	0	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--4	20:57266786	T	A	147	0.190	119	24.151	16.213	28	23.036	16.126	71	14	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--5	20:57266786	T	A	170	0.359	109	22.688	17.060	61	22.705	14.596	61	28	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--GL	20:57266786	T	NA	223	0	222	23.802	16.862	0	0	0	129	0	STX16-NPEPL1	ncRNA_exonic	NA
Medulloepithelioma--1	20:6022752	C	NA	175	0	173	33.393	8.855	0	0	0	146	0	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--2	20:6022752	C	G	251	0.004	250	34.368	7.141	1	37.000	0.000	213	1	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--3	20:6022752	C	G	151	0.020	148	32.568	9.165	3	27.667	22.234	121	2	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--4	20:6022752	C	G	232	0.267	170	32.776	9.748	62	35.629	6.617	143	56	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--5	20:6022752	C	NA	241	0	240	33.288	8.261	0	0	0	203	0	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	20:6022752	C	NA	216	0	214	33.528	8.480	0	0	0	182	0	LRRN4	exonic	nonsynonymous_SNV
Medulloepithelioma--1	2:101604589	C	NA	43	0	43	34.721	5.989	0	0	0	36	0	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--2	2:101604589	C	NA	49	0	49	34.490	8.680	0	0	0	40	0	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--3	2:101604589	C	NA	36	0	36	33.806	10.474	0	0	0	32	0	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--4	2:101604589	C	T	60	0.017	58	35.500	6.621	1	37.000	0.000	52	1	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--5	2:101604589	C	T	68	0.206	53	33.264	9.966	14	37.214	2.751	44	14	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--GL	2:101604589	C	NA	37	0	37	36.514	5.279	0	0	0	33	0	NPAS2	exonic	stopgain_SNV
Medulloepithelioma--1	2:131521120	A	G	60	0.300	42	36.190	6.769	18	28.444	13.395	38	11	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--2	2:131521120	A	G	85	0.271	62	35.306	7.228	23	33.783	10.770	53	19	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--3	2:131521120	A	G	63	0.317	43	36.233	4.482	20	30.000	13.776	40	14	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--4	2:131521120	A	G	93	0.355	60	34.733	9.301	33	35.333	5.672	53	28	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--5	2:131521120	A	G	98	0.327	66	34.045	10.117	32	35.312	4.822	58	30	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	2:131521120	A	NA	53	0	53	35.547	6.603	0	0	0	47	0	AMER3	exonic	nonsynonymous_SNV
Medulloepithelioma--1	21:32434927	A	T	33	0.364	21	37.429	3.203	12	39.333	1.497	20	12	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--2	21:32434927	A	T	31	0.516	15	35.333	9.612	16	37.875	2.473	14	16	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--3	21:32434927	A	T	33	0.606	13	39.077	1.935	20	38.700	2.993	13	20	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--4	21:32434927	A	T	15	0.467	8	37.375	3.420	7	36.286	6.211	8	6	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--5	21:32434927	A	T	18	0.556	8	38.125	3.523	10	37.600	4.812	8	9	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--GL	21:32434927	A	NA	36	0	36	36.778	5.703	0	0	0	32	0	KRTAP19-8(dist=24132),TIAM1(dist=55809)	intergenic	NA
Medulloepithelioma--1	2:166541127	C	T	36	0.167	30	37.900	3.670	6	33.500	3.886	29	5	CSRNP3	UTR3	NA
Medulloepithelioma--2	2:166541127	C	T	30	0.067	28	37.536	3.776	2	38.000	1.414	27	2	CSRNP3	UTR3	NA
Medulloepithelioma--3	2:166541127	C	T	44	0.068	40	37.250	7.431	3	37.667	2.309	37	3	CSRNP3	UTR3	NA
Medulloepithelioma--4	2:166541127	C	NA	19	0	18	37.889	4.171	0	0	0	17	0	CSRNP3	UTR3	NA
Medulloepithelioma--5	2:166541127	C	T	32	0.156	27	38.370	3.103	5	37.600	2.702	27	5	CSRNP3	UTR3	NA
Medulloepithelioma--GL	2:166541127	C	NA	51	0	51	38.647	3.322	0	0	0	49	0	CSRNP3	UTR3	NA
Medulloepithelioma--1	2:168096373	T	NA	103	0	103	36.544	8.055	0	0	0	96	0	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--2	2:168096373	T	NA	79	0	79	37.747	4.499	0	0	0	73	0	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--3	2:168096373	T	NA	102	0	102	36.833	6.347	0	0	0	94	0	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--4	2:168096373	T	C	62	0.065	58	37.224	7.346	4	40.500	0.577	55	4	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--5	2:168096373	T	C	96	0.167	79	37.494	5.196	16	36.500	9.839	73	14	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--GL	2:168096373	T	NA	105	0	105	37.133	5.681	0	0	0	94	0	XIRP2	exonic	synonymous_SNV
Medulloepithelioma--1	2:172409892	G	A	69	0.261	51	37.647	4.161	18	33.944	7.915	49	16	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--2	2:172409892	G	A	61	0.328	41	36.610	6.500	20	31.850	8.616	37	15	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--3	2:172409892	G	A	81	0.210	64	34.766	8.238	17	35.059	5.562	56	14	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--4	2:172409892	G	A	78	0.269	57	37.228	5.162	21	36.667	3.469	53	21	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--5	2:172409892	G	A	71	0.324	48	36.479	4.816	23	37.696	3.377	42	22	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	2:172409892	G	NA	93	0	93	37.419	5.713	0	0	0	87	0	CYBRD1	exonic	nonsynonymous_SNV
Medulloepithelioma--1	2:17691864	C	T	18	0.167	15	37.933	2.576	3	40.000	1.000	15	3	RAD51AP2	downstream	NA
Medulloepithelioma--2	2:17691864	C	NA	17	0	17	39.353	1.998	0	0	0	17	0	RAD51AP2	downstream	NA
Medulloepithelioma--3	2:17691864	C	NA	43	0	43	36.465	7.123	0	0	0	39	0	RAD51AP2	downstream	NA
Medulloepithelioma--4	2:17691864	C	NA	20	0	20	37.950	3.486	0	0	0	20	0	RAD51AP2	downstream	NA
Medulloepithelioma--5	2:17691864	C	NA	24	0	23	38.043	3.140	0	0	0	23	0	RAD51AP2	downstream	NA
Medulloepithelioma--GL	2:17691864	C	NA	37	0	37	37.135	4.644	0	0	0	35	0	RAD51AP2	downstream	NA
Medulloepithelioma--1	2:179621048	T	C	89	0.348	58	36.397	6.324	31	33.161	13.079	55	25	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--2	2:179621048	T	C	83	0.349	54	38.704	3.172	29	35.483	6.859	53	24	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--3	2:179621048	T	C	122	0.336	81	36.370	7.521	41	38.585	3.331	76	41	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--4	2:179621048	T	C	83	0.277	60	35.933	8.499	23	38.174	3.701	54	22	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--5	2:179621048	T	C	85	0.247	64	36.828	5.709	21	38.048	5.617	62	20	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	2:179621048	T	NA	84	0	84	37.774	4.487	0	0	0	79	0	TTN	exonic	nonsynonymous_SNV
Medulloepithelioma--1	2:201407311	A	G	36	0.278	26	36.346	3.939	10	33.900	10.016	24	8	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--2	2:201407311	A	G	34	0.294	23	35.870	7.194	10	39.300	1.829	21	10	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--3	2:201407311	A	G	31	0.355	20	36.050	4.893	11	39.909	1.375	16	11	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--4	2:201407311	A	G	33	0.303	23	34.000	9.405	10	37.200	3.615	20	10	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--5	2:201407311	A	G	26	0.500	13	37.077	4.071	13	39.000	2.449	12	13	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	2:201407311	A	NA	39	0	39	36.769	4.997	0	0	0	35	0	SGOL2	exonic	nonsynonymous_SNV
Medulloepithelioma--1	22:30864780	G	NA	76	0	76	36.934	3.810	0	0	0	73	0	SEC14L3	UTR5	NA
Medulloepithelioma--2	22:30864780	G	NA	88	0	88	33.886	10.052	0	0	0	76	0	SEC14L3	UTR5	NA
Medulloepithelioma--3	22:30864780	G	NA	66	0	66	35.924	7.535	0	0	0	60	0	SEC14L3	UTR5	NA
Medulloepithelioma--4	22:30864780	G	T	94	0.021	92	37.511	3.115	2	35.000	1.414	91	2	SEC14L3	UTR5	NA
Medulloepithelioma--5	22:30864780	G	T	88	0.295	62	36.081	5.019	26	35.962	6.128	58	24	SEC14L3	UTR5	NA
Medulloepithelioma--GL	22:30864780	G	NA	69	0	69	35.377	8.046	0	0	0	64	0	SEC14L3	UTR5	NA
Medulloepithelioma--1	2:236957777	A	NA	185	0	180	31.661	9.631	0	0	0	136	0	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--2	2:236957777	A	T	253	0.004	249	32.438	8.306	1	36.000	0.000	187	1	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--3	2:236957777	A	T	162	0.222	123	32.902	9.297	36	34.972	7.451	99	32	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--4	2:236957777	A	T	257	0.008	252	32.171	8.155	2	37.500	4.950	187	2	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--5	2:236957777	A	NA	306	0	302	32.374	8.718	0	0	0	227	0	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	2:236957777	A	NA	166	0	163	33.074	8.411	0	0	0	126	0	AGAP1	exonic	nonsynonymous_SNV
Medulloepithelioma--1	2:242127854	G	T	71	0.211	56	35.286	6.158	15	34.867	5.194	46	14	ANO7	upstream	NA
Medulloepithelioma--2	2:242127854	G	NA	74	0	74	34.324	9.426	0	0	0	65	0	ANO7	upstream	NA
Medulloepithelioma--3	2:242127854	G	NA	84	0	84	33.869	9.046	0	0	0	74	0	ANO7	upstream	NA
Medulloepithelioma--4	2:242127854	G	NA	86	0	86	36.477	5.780	0	0	0	80	0	ANO7	upstream	NA
Medulloepithelioma--5	2:242127854	G	NA	96	0	96	35.062	7.657	0	0	0	83	0	ANO7	upstream	NA
Medulloepithelioma--GL	2:242127854	G	NA	60	0	60	34.267	8.167	0	0	0	49	0	ANO7	upstream	NA
Medulloepithelioma--1	22:44965227	G	NA	89	0	89	33.764	8.593	0	0	0	81	0	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--2	22:44965227	G	NA	118	0	118	35.805	5.731	0	0	0	107	0	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--3	22:44965227	G	NA	81	0	81	34.148	8.547	0	0	0	73	0	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--4	22:44965227	G	A	105	0.067	98	34.745	8.393	7	36.571	2.936	87	7	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--5	22:44965227	G	A	127	0.323	86	35.116	7.032	41	36.585	4.450	73	39	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--GL	22:44965227	G	NA	109	0	109	35.569	7.024	0	0	0	99	0	LINC00207	ncRNA_exonic	NA
Medulloepithelioma--1	3:119099923	G	NA	87	0	87	36.448	5.868	0	0	0	79	0	ARHGAP31	intronic	NA
Medulloepithelioma--2	3:119099923	G	C	88	0.205	70	36.500	7.483	18	36.278	5.949	64	17	ARHGAP31	intronic	NA
Medulloepithelioma--3	3:119099923	G	C	99	0.010	98	35.969	8.382	1	40.000	0.000	90	1	ARHGAP31	intronic	NA
Medulloepithelioma--4	3:119099923	G	NA	81	0	81	36.963	4.380	0	0	0	75	0	ARHGAP31	intronic	NA
Medulloepithelioma--5	3:119099923	G	NA	104	0	103	36.583	6.697	0	0	0	93	0	ARHGAP31	intronic	NA
Medulloepithelioma--GL	3:119099923	G	NA	82	0	81	35.568	7.154	0	0	0	73	0	ARHGAP31	intronic	NA
Medulloepithelioma--1	3:12618318	C	A	45	0.289	32	35.656	6.003	13	36.769	2.833	29	13	MKRN2	intronic	NA
Medulloepithelioma--2	3:12618318	C	A	52	0.442	29	36.966	6.115	23	34.826	7.756	27	21	MKRN2	intronic	NA
Medulloepithelioma--3	3:12618318	C	A	37	0.378	23	38.348	2.933	14	35.429	4.327	23	13	MKRN2	intronic	NA
Medulloepithelioma--4	3:12618318	C	A	41	0.341	27	38.259	3.460	14	35.000	4.707	27	12	MKRN2	intronic	NA
Medulloepithelioma--5	3:12618318	C	A	63	0.317	42	37.071	3.056	20	37.300	3.373	41	19	MKRN2	intronic	NA
Medulloepithelioma--GL	3:12618318	C	NA	34	0	34	38.206	3.641	0	0	0	33	0	MKRN2	intronic	NA
Medulloepithelioma--1	3:52505758	G	T	43	0.163	36	35.250	8.139	7	31.286	2.498	31	5	NISCH	intronic	NA
Medulloepithelioma--2	3:52505758	G	T	48	0.042	46	34.652	8.551	2	26.500	4.950	40	1	NISCH	intronic	NA
Medulloepithelioma--3	3:52505758	G	T	38	0.158	32	36.688	7.014	6	32.333	4.967	30	5	NISCH	intronic	NA
Medulloepithelioma--4	3:52505758	G	T	36	0.111	32	36.062	5.186	4	34.250	3.202	27	4	NISCH	intronic	NA
Medulloepithelioma--5	3:52505758	G	T	56	0.071	52	35.692	6.790	4	34.000	2.449	47	4	NISCH	intronic	NA
Medulloepithelioma--GL	3:52505758	G	NA	34	0	34	37.118	3.337	0	0	0	32	0	NISCH	intronic	NA
Medulloepithelioma--1	4:134071746	G	C	197	0.173	163	35.503	6.114	34	36.176	3.697	153	32	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--2	4:134071746	G	NA	259	0	259	34.873	6.643	0	0	0	235	0	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--3	4:134071746	G	NA	193	0	193	34.715	7.017	0	0	0	173	0	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--4	4:134071746	G	NA	223	0	222	34.910	7.310	0	0	0	202	0	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--5	4:134071746	G	NA	298	0	298	34.205	7.067	0	0	0	262	0	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	4:134071746	G	NA	251	0	250	33.836	7.367	0	0	0	217	0	PCDH10	exonic	nonsynonymous_SNV
Medulloepithelioma--1	4:56235989	A	G	27	0.333	18	38.500	3.053	9	37.889	3.257	18	9	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--2	4:56235989	A	G	42	0.500	21	37.905	2.606	21	36.810	8.424	21	20	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--3	4:56235989	A	G	44	0.455	24	37.042	8.164	20	37.450	4.097	23	19	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--4	4:56235989	A	G	39	0.410	23	38.087	3.288	16	37.250	4.250	23	15	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--5	4:56235989	A	G	33	0.455	18	38.444	2.640	15	37.600	4.205	18	14	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--GL	4:56235989	A	NA	57	0	57	38.105	4.061	0	0	0	53	0	SRD5A3-AS1	ncRNA_intronic	NA
Medulloepithelioma--1	4:68337542	T	NA	19	0	19	36.368	4.879	0	0	0	16	0	CENPC	downstream	NA
Medulloepithelioma--2	4:68337542	T	A	23	0.174	19	36.947	4.102	4	40.000	1.414	17	4	CENPC	downstream	NA
Medulloepithelioma--3	4:68337542	T	NA	29	0	29	34.276	10.399	0	0	0	25	0	CENPC	downstream	NA
Medulloepithelioma--4	4:68337542	T	NA	20	0	20	34.850	7.213	0	0	0	17	0	CENPC	downstream	NA
Medulloepithelioma--5	4:68337542	T	NA	26	0	26	36.654	3.199	0	0	0	26	0	CENPC	downstream	NA
Medulloepithelioma--GL	4:68337542	T	NA	41	0	40	35.400	6.213	0	0	0	36	0	CENPC	downstream	NA
Medulloepithelioma--1	4:8022092	T	NA	82	0	82	37.500	3.875	0	0	0	79	0	ABLIM2	intronic	NA
Medulloepithelioma--2	4:8022092	T	G	116	0.457	63	36.063	7.295	53	36.358	4.637	58	49	ABLIM2	intronic	NA
Medulloepithelioma--3	4:8022092	T	G	103	0.563	45	37.133	3.684	58	36.190	6.765	43	55	ABLIM2	intronic	NA
Medulloepithelioma--4	4:8022092	T	G	117	0.291	83	37.205	3.516	34	37.824	3.224	80	34	ABLIM2	intronic	NA
Medulloepithelioma--5	4:8022092	T	G	154	0.006	153	36.523	5.252	1	31.000	0.000	144	1	ABLIM2	intronic	NA
Medulloepithelioma--GL	4:8022092	T	NA	124	0	124	36.226	4.994	0	0	0	114	0	ABLIM2	intronic	NA
Medulloepithelioma--1	5:1219238	G	T	40	0.375	25	35.960	7.976	15	36.600	3.521	23	15	SLC6A19	intronic	NA
Medulloepithelioma--2	5:1219238	G	NA	59	0	59	36.169	5.556	0	0	0	54	0	SLC6A19	intronic	NA
Medulloepithelioma--3	5:1219238	G	NA	37	0	37	36.730	3.461	0	0	0	36	0	SLC6A19	intronic	NA
Medulloepithelioma--4	5:1219238	G	NA	45	0	45	32.956	10.764	0	0	0	38	0	SLC6A19	intronic	NA
Medulloepithelioma--5	5:1219238	G	NA	52	0	52	35.077	7.430	0	0	0	48	0	SLC6A19	intronic	NA
Medulloepithelioma--GL	5:1219238	G	NA	49	0	49	34.245	9.273	0	0	0	43	0	SLC6A19	intronic	NA
Medulloepithelioma--1	5:137683544	C	A	30	0.100	27	36.296	4.539	3	33.667	2.309	24	3	FAM53C	UTR3	NA
Medulloepithelioma--2	5:137683544	C	A	44	0.159	37	35.243	8.674	7	33.000	6.137	33	6	FAM53C	UTR3	NA
Medulloepithelioma--3	5:137683544	C	NA	19	0	18	34.444	8.733	0	0	0	16	0	FAM53C	UTR3	NA
Medulloepithelioma--4	5:137683544	C	A	41	0.098	37	35.432	8.061	4	33.750	1.893	34	4	FAM53C	UTR3	NA
Medulloepithelioma--5	5:137683544	C	A	46	0.043	44	35.932	7.296	2	32.500	2.121	41	2	FAM53C	UTR3	NA
Medulloepithelioma--GL	5:137683544	C	NA	45	0	45	35.889	5.069	0	0	0	42	0	FAM53C	UTR3	NA
Medulloepithelioma--1	5:140723784	C	T	35	0.457	19	31.947	10.260	16	27.562	11.460	15	7	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--2	5:140723784	C	T	62	0.452	32	33.000	8.580	28	31.536	10.355	28	22	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--3	5:140723784	C	T	31	0.613	12	29.833	13.557	19	29.421	11.481	9	11	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--4	5:140723784	C	T	45	0.533	21	32.714	8.235	24	31.500	10.604	18	20	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--5	5:140723784	C	T	46	0.413	27	34.185	8.246	19	33.737	9.103	22	17	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	5:140723784	C	NA	40	0	40	34.400	5.377	0	0	0	35	0	PCDHGA3	exonic	nonsynonymous_SNV
Medulloepithelioma--1	6:139583834	G	C	50	0.160	42	38.762	2.658	8	36.875	4.324	42	8	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--2	6:139583834	G	NA	60	0	60	37.717	4.600	0	0	0	57	0	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--3	6:139583834	G	NA	54	0	54	35.426	6.831	0	0	0	49	0	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--4	6:139583834	G	NA	72	0	72	36.111	6.721	0	0	0	65	0	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--5	6:139583834	G	NA	60	0	60	35.983	6.474	0	0	0	54	0	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	6:139583834	G	NA	63	0	63	36.651	5.973	0	0	0	59	0	TXLNB	exonic	nonsynonymous_SNV
Medulloepithelioma--1	6:17616063	C	NA	25	0	25	36.960	4.067	0	0	0	24	0	NUP153	UTR3	NA
Medulloepithelioma--2	6:17616063	C	NA	19	0	18	36.611	9.444	0	0	0	16	0	NUP153	UTR3	NA
Medulloepithelioma--3	6:17616063	C	NA	26	0	26	38.269	3.935	0	0	0	25	0	NUP153	UTR3	NA
Medulloepithelioma--4	6:17616063	C	NA	16	0	16	34.125	10.236	0	0	0	14	0	NUP153	UTR3	NA
Medulloepithelioma--5	6:17616063	C	G	18	0.167	15	37.467	3.998	3	40.667	0.577	15	3	NUP153	UTR3	NA
Medulloepithelioma--GL	6:17616063	C	NA	33	0	33	37.970	3.795	0	0	0	31	0	NUP153	UTR3	NA
Medulloepithelioma--1	6:41557890	T	A	84	0.488	43	34.233	7.609	41	32.878	9.852	38	35	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--2	6:41557890	T	A	101	0.554	45	35.978	3.899	56	32.321	9.416	43	47	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--3	6:41557890	T	A	74	0.527	35	33.143	10.267	39	34.769	4.451	31	32	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--4	6:41557890	T	A	122	0.443	67	34.955	6.696	54	33.611	8.675	60	47	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--5	6:41557890	T	A	100	0.500	50	34.240	8.292	50	33.160	8.660	44	43	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	6:41557890	T	NA	98	0	97	35.443	5.675	0	0	0	86	0	FOXP4	exonic	nonsynonymous_SNV
Medulloepithelioma--1	6:53133225	C	NA	31	0	30	37.667	4.611	0	0	0	28	0	ELOVL5	UTR3	NA
Medulloepithelioma--2	6:53133225	C	NA	27	0	27	35.852	5.908	0	0	0	23	0	ELOVL5	UTR3	NA
Medulloepithelioma--3	6:53133225	C	NA	33	0	32	38.719	2.854	0	0	0	31	0	ELOVL5	UTR3	NA
Medulloepithelioma--4	6:53133225	C	T	22	0.182	18	36.944	4.123	4	34.500	3.000	17	4	ELOVL5	UTR3	NA
Medulloepithelioma--5	6:53133225	C	T	28	0.071	26	36.308	6.863	2	37.000	0.000	25	2	ELOVL5	UTR3	NA
Medulloepithelioma--GL	6:53133225	C	NA	46	0	46	34.217	9.991	0	0	0	39	0	ELOVL5	UTR3	NA
Medulloepithelioma--1	6:93802305	G	A	44	0.455	24	35.917	8.177	20	37.450	7.612	23	18	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--2	6:93802305	G	A	47	0.383	29	36.621	4.329	18	36.611	4.901	26	15	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--3	6:93802305	G	A	25	0.440	14	35.429	8.131	11	35.455	6.532	11	10	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--4	6:93802305	G	A	23	0.435	13	37.923	2.871	10	35.000	8.165	13	9	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--5	6:93802305	G	A	25	0.440	14	37.643	4.217	11	37.000	5.983	13	10	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--GL	6:93802305	G	NA	35	0	35	36.943	4.601	0	0	0	31	0	CASC6(dist=1402159),EPHA7(dist=147435)	intergenic	NA
Medulloepithelioma--1	6:96056436	C	T	22	0.591	9	38.222	4.604	13	36.692	5.663	8	11	MANEA	UTR3	NA
Medulloepithelioma--2	6:96056436	C	T	15	0.533	7	35.714	7.675	8	33.375	10.295	6	7	MANEA	UTR3	NA
Medulloepithelioma--3	6:96056436	C	T	40	0.525	19	36.947	3.407	21	37.381	4.832	18	19	MANEA	UTR3	NA
Medulloepithelioma--4	6:96056436	C	T	20	0.400	12	36.333	4.376	8	35.625	5.755	12	6	MANEA	UTR3	NA
Medulloepithelioma--5	6:96056436	C	T	32	0.469	17	35.882	6.133	15	39.600	1.957	13	15	MANEA	UTR3	NA
Medulloepithelioma--GL	6:96056436	C	NA	51	0	51	37.510	4.120	0	0	0	49	0	MANEA	UTR3	NA
Medulloepithelioma--1	7:100284305	G	A	32	0.531	15	30.133	11.975	17	30.882	11.677	10	13	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--2	7:100284305	G	A	52	0.462	28	28.821	10.812	24	32.250	10.101	20	20	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--3	7:100284305	G	A	32	0.562	14	31.214	9.234	18	30.889	9.029	12	13	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--4	7:100284305	G	A	47	0.596	19	31.789	8.522	28	29.429	12.453	14	20	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--5	7:100284305	G	A	46	0.630	16	27.312	10.928	29	29.483	10.463	9	20	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--GL	7:100284305	G	NA	48	0	48	30.583	9.871	0	0	0	38	0	GIGYF1	exonic	stopgain_SNV
Medulloepithelioma--1	7:138270345	T	G	35	0.057	33	37.182	8.391	2	39.000	2.828	31	2	TRIM24	downstream	NA
Medulloepithelioma--2	7:138270345	T	G	17	0.059	16	38.250	3.416	1	40.000	0.000	15	1	TRIM24	downstream	NA
Medulloepithelioma--3	7:138270345	T	G	30	0.167	25	38.200	2.677	5	36.000	4.301	25	5	TRIM24	downstream	NA
Medulloepithelioma--4	7:138270345	T	G	24	0.042	23	37.565	3.565	1	40.000	0.000	23	1	TRIM24	downstream	NA
Medulloepithelioma--5	7:138270345	T	NA	21	0	21	38.714	3.495	0	0	0	20	0	TRIM24	downstream	NA
Medulloepithelioma--GL	7:138270345	T	NA	38	0	38	37.816	4.324	0	0	0	35	0	TRIM24	downstream	NA
Medulloepithelioma--1	7:138270346	G	NA	34	0	32	38.375	3.087	0	0	0	32	0	TRIM24	downstream	NA
Medulloepithelioma--2	7:138270346	G	T	17	0.059	16	38.625	2.446	1	40.000	0.000	16	1	TRIM24	downstream	NA
Medulloepithelioma--3	7:138270346	G	T	31	0.161	26	37.346	4.270	5	36.800	3.834	24	5	TRIM24	downstream	NA
Medulloepithelioma--4	7:138270346	G	T	23	0.043	22	37.773	2.910	1	40.000	0.000	22	1	TRIM24	downstream	NA
Medulloepithelioma--5	7:138270346	G	NA	22	0	22	37.591	4.159	0	0	0	21	0	TRIM24	downstream	NA
Medulloepithelioma--GL	7:138270346	G	NA	37	0	37	37.568	5.194	0	0	0	35	0	TRIM24	downstream	NA
Medulloepithelioma--1	7:142247474	T	NA	35	0	32	28.688	11.566	0	0	0	21	0	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--2	7:142247474	T	C	44	0.159	35	32.886	8.778	7	33.857	1.464	28	7	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--3	7:142247474	T	NA	42	0	41	32.098	8.417	0	0	0	31	0	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--4	7:142247474	T	C	45	0.044	41	34.585	5.683	2	29.000	5.657	36	1	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--5	7:142247474	T	C	39	0.051	36	35.500	4.372	2	34.000	4.243	31	2	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--GL	7:142247474	T	NA	40	0	39	35.000	6.177	0	0	0	34	0	TRY2P(dist=275406),MTRNR2L6(dist=126657)	intergenic	NA
Medulloepithelioma--1	7:2652396	A	G	51	0.059	47	32.489	9.224	3	32.333	1.155	36	3	IQCE	UTR3	NA
Medulloepithelioma--2	7:2652396	A	G	78	0.128	67	32.418	7.897	10	33.000	4.372	52	9	IQCE	UTR3	NA
Medulloepithelioma--3	7:2652396	A	G	53	0.057	50	31.460	10.096	3	33.667	7.767	39	2	IQCE	UTR3	NA
Medulloepithelioma--4	7:2652396	A	G	70	0.171	57	31.807	9.448	12	36.083	4.078	42	11	IQCE	UTR3	NA
Medulloepithelioma--5	7:2652396	A	G	71	0.042	68	33.779	7.186	3	36.667	4.163	57	3	IQCE	UTR3	NA
Medulloepithelioma--GL	7:2652396	A	G	60	0.017	58	28.724	11.847	1	29.000	0.000	42	0	IQCE	UTR3	NA
Medulloepithelioma--1	7:47463776	G	T	52	0.019	51	36.686	7.878	1	40.000	0.000	47	1	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--2	7:47463776	G	NA	60	0	60	34.717	7.801	0	0	0	53	0	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--3	7:47463776	G	NA	77	0	77	37.013	5.401	0	0	0	73	0	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--4	7:47463776	G	NA	49	0	49	35.714	8.010	0	0	0	45	0	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--5	7:47463776	G	T	71	0.310	49	35.245	7.836	22	36.364	3.402	43	22	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	7:47463776	G	NA	97	0	96	35.792	5.544	0	0	0	89	0	TNS3	exonic	nonsynonymous_SNV
Medulloepithelioma--1	7:48550794	G	C	73	0.356	47	37.319	6.328	26	32.692	10.256	45	22	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--2	7:48550794	G	C	78	0.538	36	37.222	3.514	42	36.548	6.663	35	40	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--3	7:48550794	G	C	77	0.468	40	36.900	6.879	36	36.722	6.158	37	33	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--4	7:48550794	G	C	68	0.382	41	35.878	6.596	26	36.385	6.906	36	24	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--5	7:48550794	G	NA	83	0	83	35.819	7.993	0	0	0	74	0	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	7:48550794	G	NA	87	0	87	37.529	5.509	0	0	0	84	0	ABCA13	exonic	nonsynonymous_SNV
Medulloepithelioma--1	7:56718209	A	NA	23	0	22	37.364	3.995	0	0	0	22	0	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--2	7:56718209	A	C	17	0.059	16	35.812	7.007	1	33.000	0.000	14	1	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--3	7:56718209	A	NA	18	0	18	37.333	3.662	0	0	0	18	0	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--4	7:56718209	A	NA	19	0	19	37.684	4.137	0	0	0	18	0	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--5	7:56718209	A	C	13	0.231	10	35.200	9.875	3	35.000	0.000	9	3	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--GL	7:56718209	A	NA	39	0	39	37.436	2.989	0	0	0	39	0	LOC101928401(dist=112386),LOC100130849(dist=224869)	intergenic	NA
Medulloepithelioma--1	8:11280647	G	NA	54	0	54	36.944	4.218	0	0	0	49	0	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--2	8:11280647	G	NA	83	0	83	35.602	7.121	0	0	0	73	0	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--3	8:11280647	G	NA	76	0	76	37.237	5.051	0	0	0	70	0	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--4	8:11280647	G	A	93	0.011	92	36.098	6.251	1	34.000	0.000	83	1	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--5	8:11280647	G	A	60	0.283	43	34.930	8.733	17	36.235	7.981	37	15	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--GL	8:11280647	G	NA	62	0	62	36.597	4.758	0	0	0	55	0	FAM167A	ncRNA_UTR3	NA
Medulloepithelioma--1	8:124219612	C	G	133	0.451	73	29.959	12.298	60	33.533	6.640	53	50	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--2	8:124219612	C	G	252	0.627	93	32.613	7.088	158	31.614	9.657	70	124	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--3	8:124219612	C	G	158	0.627	59	31.153	9.681	99	31.929	9.732	44	82	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--4	8:124219612	C	G	243	0.638	88	31.591	9.677	155	31.426	8.877	68	119	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--5	8:124219612	C	G	191	0.429	109	31.862	9.256	82	31.451	10.041	82	61	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	8:124219612	C	NA	171	0	171	30.585	10.343	0	0	0	120	0	FAM83A	exonic	nonsynonymous_SNV
Medulloepithelioma--1	8:23282450	A	NA	44	0	31	37.161	3.560	0	0	0	30	0	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--2	8:23282450	A	G	55	0.127	29	37.448	4.469	7	33.143	2.478	27	7	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--3	8:23282450	A	NA	53	0	27	39.148	3.110	0	0	0	27	0	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--4	8:23282450	A	NA	41	0	23	38.609	3.327	0	0	0	23	0	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--5	8:23282450	A	G	37	0.054	21	37.762	2.737	2	32.500	2.121	21	2	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--GL	8:23282450	A	NA	53	0	36	38.361	3.339	0	0	0	34	0	LOXL2(dist=20728),ENTPD4(dist=4215)	intergenic	NA
Medulloepithelioma--1	8:41508545	C	T	22	0.182	18	27.889	8.944	4	26.500	10.661	9	2	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--2	8:41508545	C	T	65	0.154	55	24.291	13.025	10	28.000	14.855	29	6	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--3	8:41508545	C	T	54	0.204	43	24.279	13.240	11	25.818	14.232	22	5	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--4	8:41508545	C	T	61	0.279	44	28.091	10.768	17	25.294	11.836	24	9	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--5	8:41508545	C	T	55	0.200	44	27.114	12.865	11	21.636	13.155	28	4	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--GL	8:41508545	C	NA	40	0	38	30.289	9.046	0	0	0	27	0	NKX6-3(dist=3667),ANK1(dist=2199)	intergenic	NA
Medulloepithelioma--1	8:57354309	C	A	107	0.467	57	35.754	8.536	50	32.920	7.669	51	37	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--2	8:57354309	C	A	182	0.604	72	37.167	5.853	110	34.127	6.701	67	89	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--3	8:57354309	C	A	171	0.608	66	36.879	6.001	104	34.048	7.261	61	86	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--4	8:57354309	C	A	159	0.648	55	37.073	5.916	103	31.466	10.135	53	81	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--5	8:57354309	C	A	144	0.465	77	36.675	5.437	67	34.030	6.546	73	56	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--GL	8:57354309	C	NA	198	0	197	35.883	6.884	0	0	0	181	0	PENK	exonic	nonsynonymous_SNV
Medulloepithelioma--1	8:72755834	G	C	120	0.475	63	34.873	5.687	57	35.228	5.431	59	53	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--2	8:72755834	G	C	185	0.308	128	34.203	6.325	57	33.789	7.333	114	49	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--3	8:72755834	G	C	151	0.272	110	33.000	9.278	41	31.683	11.420	95	34	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--4	8:72755834	G	C	171	0.392	104	33.125	8.195	67	32.881	9.710	90	57	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--5	8:72755834	G	C	142	0.500	71	34.127	6.351	71	34.211	7.235	64	62	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--GL	8:72755834	G	NA	131	0	130	32.192	10.129	0	0	0	110	0	LOC100132891	ncRNA_exonic	NA
Medulloepithelioma--1	8:98828412	C	NA	40	0	40	37.175	6.861	0	0	0	37	0	LAPTM4B	intronic	NA
Medulloepithelioma--2	8:98828412	C	NA	47	0	47	38.596	3.125	0	0	0	46	0	LAPTM4B	intronic	NA
Medulloepithelioma--3	8:98828412	C	T	61	0.016	60	38.400	3.248	1	39.000	0.000	59	1	LAPTM4B	intronic	NA
Medulloepithelioma--4	8:98828412	C	T	49	0.041	47	36.532	5.763	2	39.500	2.121	45	2	LAPTM4B	intronic	NA
Medulloepithelioma--5	8:98828412	C	T	36	0.444	20	38.650	3.660	16	38.562	1.590	19	16	LAPTM4B	intronic	NA
Medulloepithelioma--GL	8:98828412	C	NA	56	0	56	37.946	5.820	0	0	0	54	0	LAPTM4B	intronic	NA
Medulloepithelioma--1	9:131023844	C	T	88	0.159	74	38.676	4.533	14	34.571	8.373	72	11	GOLGA2	intronic	NA
Medulloepithelioma--2	9:131023844	C	T	125	0.016	122	37.000	5.270	2	24.000	21.213	110	1	GOLGA2	intronic	NA
Medulloepithelioma--3	9:131023844	C	NA	99	0	99	37.616	4.412	0	0	0	92	0	GOLGA2	intronic	NA
Medulloepithelioma--4	9:131023844	C	NA	115	0	115	36.052	7.888	0	0	0	103	0	GOLGA2	intronic	NA
Medulloepithelioma--5	9:131023844	C	NA	111	0	111	36.712	6.485	0	0	0	102	0	GOLGA2	intronic	NA
Medulloepithelioma--GL	9:131023844	C	NA	74	0	73	37.027	7.102	0	0	0	66	0	GOLGA2	intronic	NA
Medulloepithelioma--1	9:15423848	C	NA	67	0	67	37.582	3.718	0	0	0	64	0	SNAPC3	intronic	NA
Medulloepithelioma--2	9:15423848	C	NA	66	0	66	36.439	6.303	0	0	0	62	0	SNAPC3	intronic	NA
Medulloepithelioma--3	9:15423848	C	NA	80	0	80	36.925	6.780	0	0	0	74	0	SNAPC3	intronic	NA
Medulloepithelioma--4	9:15423848	C	T	72	0.014	71	36.986	6.287	1	34.000	0.000	66	1	SNAPC3	intronic	NA
Medulloepithelioma--5	9:15423848	C	T	64	0.172	53	38.585	3.661	11	36.364	6.021	51	10	SNAPC3	intronic	NA
Medulloepithelioma--GL	9:15423848	C	NA	61	0	61	37.311	5.629	0	0	0	58	0	SNAPC3	intronic	NA
Medulloepithelioma--1	9:35819412	G	T	71	0.437	40	35.300	6.772	31	36.032	3.781	34	29	FAM221B	intronic	NA
Medulloepithelioma--2	9:35819412	G	T	118	0.237	90	33.522	9.151	28	36.893	3.891	73	27	FAM221B	intronic	NA
Medulloepithelioma--3	9:35819412	G	T	97	0.412	57	34.667	7.318	40	35.050	7.275	50	36	FAM221B	intronic	NA
Medulloepithelioma--4	9:35819412	G	T	98	0.378	60	35.250	5.183	37	36.162	6.854	53	34	FAM221B	intronic	NA
Medulloepithelioma--5	9:35819412	G	T	108	0.167	90	36.200	5.535	18	37.556	4.973	85	17	FAM221B	intronic	NA
Medulloepithelioma--GL	9:35819412	G	NA	57	0	57	34.263	7.123	0	0	0	52	0	FAM221B	intronic	NA
Medulloepithelioma--1	9:66457631	C	G	47	0.128	41	30.537	9.729	6	35.833	3.971	33	6	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--2	9:66457631	C	G	59	0.051	56	32.571	6.638	3	39.667	0.577	46	3	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--3	9:66457631	C	G	42	0.167	35	32.286	9.275	7	34.000	3.916	27	6	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--4	9:66457631	C	G	52	0.096	46	33.696	6.811	5	34.800	5.357	38	4	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--5	9:66457631	C	G	60	0.017	59	30.729	10.489	1	34.000	0.000	43	1	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--GL	9:66457631	C	NA	44	0	44	33.795	5.475	0	0	0	36	0	SPATA31A5(dist=948021),PTGER4P2-CDK2AP2P2(dist=36638)	intergenic	NA
Medulloepithelioma--1	9:77377783	A	G	106	0.226	82	37.024	5.715	24	36.583	5.904	74	23	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--2	9:77377783	A	NA	102	0	102	35.853	8.022	0	0	0	91	0	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--3	9:77377783	A	NA	96	0	96	35.427	8.186	0	0	0	88	0	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--4	9:77377783	A	NA	94	0	93	34.796	8.482	0	0	0	85	0	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--5	9:77377783	A	NA	110	0	110	36.955	5.119	0	0	0	104	0	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--GL	9:77377783	A	NA	69	0	69	36.855	6.049	0	0	0	63	0	TRPM6	exonic	synonymous_SNV
Medulloepithelioma--1	GL000234.1:3381	C	G	24	0.167	20	32.000	8.310	4	37.000	3.266	16	4	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
Medulloepithelioma--2	GL000234.1:3381	C	G	35	0.143	30	30.233	10.957	5	28.000	10.296	23	3	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
Medulloepithelioma--3	GL000234.1:3381	C	NA	16	0	14	34.429	3.031	0	0	0	13	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
Medulloepithelioma--4	GL000234.1:3381	C	G	34	0.206	26	31.615	9.567	7	33.000	3.742	21	5	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
Medulloepithelioma--5	GL000234.1:3381	C	G	32	0.062	29	33.483	7.169	2	36.000	4.243	25	2	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
Medulloepithelioma--GL	GL000234.1:3381	C	NA	34	0	33	33.061	5.645	0	0	0	28	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T10--1	chr10:104850451	G	A	81	0.049	77	36.649	6.192	4	29.750	18.572	74	3	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--2	chr10:104850451	G	A	82	0.317	56	37.661	4.391	26	37.423	3.361	51	25	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--3	chr10:104850451	G	A	88	0.057	83	36.277	5.653	5	35.600	1.949	78	5	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--4	chr10:104850451	G	A	67	0.269	48	33.833	9.672	18	34.556	9.519	40	16	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--5	chr10:104850451	G	A	60	0.283	43	33.605	10.333	17	34.235	10.028	38	15	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--6	chr10:104850451	G	A	48	0.333	32	37.344	5.103	16	38.250	2.490	31	16	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--7	chr10:104850451	G	A	60	0.133	51	37.549	3.264	8	36.750	4.166	50	7	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--8	chr10:104850451	G	A	106	0.255	79	35.823	7.870	27	33.926	11.069	73	24	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr10:104850451	G	NA	92	0	92	34.641	8.508	0	0	0	82	0	NT5C2	exonic	nonsynonymous_SNV
RCC_T10--1	chr10:131967661	G	NA	59	0	58	36.897	5.803	0	0	0	56	0	GLRX3	intronic	NA
RCC_T10--2	chr10:131967661	G	NA	50	0	50	35.080	7.905	0	0	0	46	0	GLRX3	intronic	NA
RCC_T10--3	chr10:131967661	G	NA	64	0	64	37.938	2.938	0	0	0	64	0	GLRX3	intronic	NA
RCC_T10--4	chr10:131967661	G	T	54	0.148	46	35.957	6.317	8	34.500	13.352	41	7	GLRX3	intronic	NA
RCC_T10--5	chr10:131967661	G	T	45	0.089	41	36.512	7.400	4	35.750	0.957	38	4	GLRX3	intronic	NA
RCC_T10--6	chr10:131967661	G	NA	44	0	43	36.116	7.503	0	0	0	40	0	GLRX3	intronic	NA
RCC_T10--7	chr10:131967661	G	NA	44	0	43	35.977	5.829	0	0	0	36	0	GLRX3	intronic	NA
RCC_T10--8	chr10:131967661	G	NA	77	0	75	35.640	8.133	0	0	0	68	0	GLRX3	intronic	NA
RCC_T10--GL	chr10:131967661	G	NA	66	0	66	36.621	5.756	0	0	0	63	0	GLRX3	intronic	NA
RCC_T10--1	chr10:323333	G	NA	477	0	473	34.588	7.998	0	0	0	425	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--2	chr10:323333	G	NA	389	0	388	34.887	7.143	0	0	0	348	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--3	chr10:323333	G	NA	520	0	516	34.990	7.518	0	0	0	468	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--4	chr10:323333	G	NA	395	0	395	34.382	8.338	0	0	0	355	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--5	chr10:323333	G	A	394	0.005	391	34.795	7.820	2	35.500	2.121	355	2	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--6	chr10:323333	G	A	363	0.185	295	34.671	8.495	67	34.433	7.919	266	61	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--7	chr10:323333	G	NA	411	0	411	34.628	8.037	0	0	0	366	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--8	chr10:323333	G	NA	511	0	510	34.535	8.618	0	0	0	460	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--GL	chr10:323333	G	NA	442	0	442	33.244	9.426	0	0	0	370	0	DIP2C	exonic	nonsynonymous_SNV
RCC_T10--1	chr10:52103640	C	T	239	0.105	214	34.972	8.512	25	36.560	5.108	189	23	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--2	chr10:52103640	C	T	225	0.329	151	36.344	6.785	74	36.568	4.993	144	69	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--3	chr10:52103640	C	T	270	0.081	247	36.409	6.279	22	38.545	2.940	232	22	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--4	chr10:52103640	C	T	245	0.302	171	34.725	8.149	74	36.865	5.543	149	70	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--5	chr10:52103640	C	T	259	0.216	203	36.222	5.251	56	36.161	6.237	189	54	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--6	chr10:52103640	C	T	222	0.419	129	36.581	6.308	93	34.097	9.351	122	80	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--7	chr10:52103640	C	T	206	0.131	178	33.876	9.775	27	38.333	2.828	150	27	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--8	chr10:52103640	C	T	295	0.200	235	35.613	6.821	59	36.712	4.624	214	55	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--GL	chr10:52103640	C	NA	286	0	285	33.884	8.686	0	0	0	245	0	SGMS1	exonic	nonsynonymous_SNV
RCC_T10--1	chr10:79553883	G	NA	170	0	169	36.828	5.135	0	0	0	161	0	DLG5	intronic	NA
RCC_T10--2	chr10:79553883	G	NA	161	0	160	36.388	7.290	0	0	0	147	0	DLG5	intronic	NA
RCC_T10--3	chr10:79553883	G	NA	196	0	195	35.462	7.853	0	0	0	175	0	DLG5	intronic	NA
RCC_T10--4	chr10:79553883	G	A	137	0.007	136	36.860	5.008	1	40.000	0.000	128	1	DLG5	intronic	NA
RCC_T10--5	chr10:79553883	G	A	203	0.148	173	34.526	8.494	30	35.933	4.899	153	27	DLG5	intronic	NA
RCC_T10--6	chr10:79553883	G	A	150	0.160	124	35.718	5.555	24	34.417	8.251	114	21	DLG5	intronic	NA
RCC_T10--7	chr10:79553883	G	A	161	0.143	138	35.181	8.563	23	35.217	8.028	122	21	DLG5	intronic	NA
RCC_T10--8	chr10:79553883	G	NA	201	0	201	35.821	7.853	0	0	0	182	0	DLG5	intronic	NA
RCC_T10--GL	chr10:79553883	G	NA	202	0	201	35.433	6.113	0	0	0	176	0	DLG5	intronic	NA
RCC_T10--1	chr11:105923816	C	NA	90	0	90	38.133	6.028	0	0	0	86	0	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--2	chr11:105923816	C	NA	82	0	82	37.098	4.373	0	0	0	78	0	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--3	chr11:105923816	C	NA	83	0	83	37.807	5.718	0	0	0	78	0	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--4	chr11:105923816	C	T	106	0.151	89	36.978	6.431	16	36.750	9.588	84	15	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--5	chr11:105923816	C	T	107	0.318	73	37.959	4.322	34	37.412	6.738	71	33	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--6	chr11:105923816	C	T	87	0.195	70	37.271	6.447	17	39.706	1.795	67	17	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--7	chr11:105923816	C	T	99	0.131	86	36.802	6.538	13	38.923	2.565	80	13	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--8	chr11:105923816	C	T	145	0.234	109	38.028	4.510	34	38.735	3.369	104	33	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr11:105923816	C	NA	138	0	138	38.029	4.718	0	0	0	132	0	KBTBD3	exonic	nonsynonymous_SNV
RCC_T10--1	chr1:110714574	C	NA	120	0	120	36.458	3.632	0	0	0	115	0	SLC6A17	intronic	NA
RCC_T10--2	chr1:110714574	C	NA	95	0	93	35.591	6.924	0	0	0	86	0	SLC6A17	intronic	NA
RCC_T10--3	chr1:110714574	C	NA	99	0	97	35.856	7.001	0	0	0	90	0	SLC6A17	intronic	NA
RCC_T10--4	chr1:110714574	C	NA	70	0	68	33.412	8.503	0	0	0	57	0	SLC6A17	intronic	NA
RCC_T10--5	chr1:110714574	C	NA	93	0	92	35.630	5.641	0	0	0	83	0	SLC6A17	intronic	NA
RCC_T10--6	chr1:110714574	C	NA	58	0	58	36.431	5.592	0	0	0	55	0	SLC6A17	intronic	NA
RCC_T10--7	chr1:110714574	C	NA	65	0	65	35.123	7.631	0	0	0	60	0	SLC6A17	intronic	NA
RCC_T10--8	chr1:110714574	C	T	98	0.214	76	34.013	7.315	21	34.476	5.125	67	18	SLC6A17	intronic	NA
RCC_T10--GL	chr1:110714574	C	NA	93	0	93	35.151	6.977	0	0	0	84	0	SLC6A17	intronic	NA
RCC_T10--1	chr11:108362093	C	T	44	0.023	43	37.395	6.804	1	35.000	0.000	40	1	KDELC2	intronic	NA
RCC_T10--2	chr11:108362093	C	T	40	0.200	32	37.594	4.257	8	28.750	8.812	29	5	KDELC2	intronic	NA
RCC_T10--3	chr11:108362093	C	NA	53	0	45	36.067	6.013	0	0	0	42	0	KDELC2	intronic	NA
RCC_T10--4	chr11:108362093	C	T	47	0.085	43	37.837	3.625	4	24.250	14.908	41	2	KDELC2	intronic	NA
RCC_T10--5	chr11:108362093	C	T	49	0.122	43	36.930	4.334	6	21.667	15.280	39	3	KDELC2	intronic	NA
RCC_T10--6	chr11:108362093	C	T	44	0.114	39	38.000	4.657	5	30.800	7.014	37	3	KDELC2	intronic	NA
RCC_T10--7	chr11:108362093	C	T	34	0.118	30	38.133	2.751	4	35.750	1.500	29	4	KDELC2	intronic	NA
RCC_T10--8	chr11:108362093	C	T	50	0.080	46	37.457	3.404	4	24.500	8.813	45	1	KDELC2	intronic	NA
RCC_T10--GL	chr11:108362093	C	NA	55	0	54	35.537	8.318	0	0	0	49	0	KDELC2	intronic	NA
RCC_T10--1	chr11:123489514	C	G	73	0.055	69	36.536	3.346	4	36.500	1.732	68	4	GRAMD1B	intronic	NA
RCC_T10--2	chr11:123489514	C	G	69	0.232	53	35.453	4.121	16	32.625	9.926	51	12	GRAMD1B	intronic	NA
RCC_T10--3	chr11:123489514	C	G	85	0.059	80	35.550	5.972	5	31.000	8.860	73	4	GRAMD1B	intronic	NA
RCC_T10--4	chr11:123489514	C	G	57	0.158	48	35.854	6.178	9	37.222	2.539	45	9	GRAMD1B	intronic	NA
RCC_T10--5	chr11:123489514	C	NA	77	0	76	34.895	6.650	0	0	0	70	0	GRAMD1B	intronic	NA
RCC_T10--6	chr11:123489514	C	G	65	0.138	56	35.964	5.637	9	35.667	5.315	53	8	GRAMD1B	intronic	NA
RCC_T10--7	chr11:123489514	C	NA	59	0	58	35.345	7.362	0	0	0	55	0	GRAMD1B	intronic	NA
RCC_T10--8	chr11:123489514	C	NA	115	0	115	35.826	6.566	0	0	0	107	0	GRAMD1B	intronic	NA
RCC_T10--GL	chr11:123489514	C	NA	62	0	62	33.903	9.120	0	0	0	54	0	GRAMD1B	intronic	NA
RCC_T10--1	chr11:124095954	T	G	288	0.007	286	36.465	5.468	2	37.000	2.828	267	2	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--2	chr11:124095954	T	G	242	0.281	174	37.011	4.518	68	37.941	3.268	167	67	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--3	chr11:124095954	T	NA	284	0	284	36.570	4.785	0	0	0	268	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--4	chr11:124095954	T	NA	239	0	239	36.385	5.334	0	0	0	226	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--5	chr11:124095954	T	NA	299	0	299	36.147	6.287	0	0	0	277	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--6	chr11:124095954	T	NA	190	0	190	35.474	7.073	0	0	0	171	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--7	chr11:124095954	T	NA	240	0	240	35.596	6.851	0	0	0	223	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--8	chr11:124095954	T	NA	355	0	354	36.415	5.218	0	0	0	334	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr11:124095954	T	NA	321	0	321	35.234	7.296	0	0	0	292	0	OR8G2	exonic	nonsynonymous_SNV
RCC_T10--1	chr11:125298901	G	NA	96	0	96	35.312	6.871	0	0	0	88	0	PKNOX2	intronic	NA
RCC_T10--2	chr11:125298901	G	NA	91	0	91	35.582	5.147	0	0	0	84	0	PKNOX2	intronic	NA
RCC_T10--3	chr11:125298901	G	NA	103	0	103	35.408	4.860	0	0	0	97	0	PKNOX2	intronic	NA
RCC_T10--4	chr11:125298901	G	C	100	0.170	83	32.024	11.111	17	30.529	11.954	68	14	PKNOX2	intronic	NA
RCC_T10--5	chr11:125298901	G	C	97	0.320	65	35.154	6.320	31	35.935	6.850	63	30	PKNOX2	intronic	NA
RCC_T10--6	chr11:125298901	G	C	81	0.185	66	34.712	7.174	15	35.467	4.068	59	14	PKNOX2	intronic	NA
RCC_T10--7	chr11:125298901	G	C	65	0.185	53	33.038	7.937	12	35.750	2.261	45	12	PKNOX2	intronic	NA
RCC_T10--8	chr11:125298901	G	C	85	0.071	78	34.513	7.656	6	29.833	13.703	71	5	PKNOX2	intronic	NA
RCC_T10--GL	chr11:125298901	G	NA	128	0	127	33.079	9.071	0	0	0	106	0	PKNOX2	intronic	NA
RCC_T10--1	chr11:130275284	T	C	44	0.182	36	35.333	8.428	8	38.500	2.000	32	8	ADAMTS8	UTR3	NA
RCC_T10--2	chr11:130275284	T	C	41	0.268	30	36.067	7.423	11	31.909	14.976	27	9	ADAMTS8	UTR3	NA
RCC_T10--3	chr11:130275284	T	C	33	0.121	29	35.586	9.590	4	37.250	2.630	27	4	ADAMTS8	UTR3	NA
RCC_T10--4	chr11:130275284	T	C	33	0.303	23	34.565	9.940	10	34.000	3.916	18	9	ADAMTS8	UTR3	NA
RCC_T10--5	chr11:130275284	T	C	39	0.308	27	34.704	9.844	12	37.167	4.239	24	11	ADAMTS8	UTR3	NA
RCC_T10--6	chr11:130275284	T	C	42	0.238	32	35.500	7.405	10	34.100	11.930	29	8	ADAMTS8	UTR3	NA
RCC_T10--7	chr11:130275284	T	C	33	0.182	26	36.731	4.055	6	38.833	2.041	25	6	ADAMTS8	UTR3	NA
RCC_T10--8	chr11:130275284	T	C	42	0.143	36	37.028	5.690	6	38.167	2.483	34	6	ADAMTS8	UTR3	NA
RCC_T10--GL	chr11:130275284	T	NA	44	0	44	35.500	7.180	0	0	0	40	0	ADAMTS8	UTR3	NA
RCC_T10--1	chr11:134179696	G	NA	72	0	71	36.592	5.103	0	0	0	70	0	GLB1L3	intronic	NA
RCC_T10--2	chr11:134179696	G	NA	78	0	78	35.372	7.433	0	0	0	70	0	GLB1L3	intronic	NA
RCC_T10--3	chr11:134179696	G	NA	75	0	75	35.587	4.565	0	0	0	69	0	GLB1L3	intronic	NA
RCC_T10--4	chr11:134179696	G	A	82	0.146	69	35.710	5.798	12	35.583	4.055	63	11	GLB1L3	intronic	NA
RCC_T10--5	chr11:134179696	G	A	76	0.263	55	34.818	7.701	20	36.800	3.238	50	19	GLB1L3	intronic	NA
RCC_T10--6	chr11:134179696	G	A	59	0.119	52	35.462	8.023	7	36.857	2.268	49	7	GLB1L3	intronic	NA
RCC_T10--7	chr11:134179696	G	A	59	0.051	56	35.125	8.848	3	38.333	3.055	51	3	GLB1L3	intronic	NA
RCC_T10--8	chr11:134179696	G	A	105	0.200	84	34.286	9.233	21	30.905	11.063	76	15	GLB1L3	intronic	NA
RCC_T10--GL	chr11:134179696	G	NA	76	0	76	32.250	10.702	0	0	0	63	0	GLB1L3	intronic	NA
RCC_T10--1	chr1:114246738	G	A	126	0.032	121	36.322	6.845	4	35.500	4.123	116	4	PHTF1	exonic	synonymous_SNV
RCC_T10--2	chr1:114246738	G	A	118	0.271	85	35.800	6.734	32	36.375	7.042	80	30	PHTF1	exonic	synonymous_SNV
RCC_T10--3	chr1:114246738	G	A	146	0.082	134	35.985	7.395	12	31.333	13.944	126	10	PHTF1	exonic	synonymous_SNV
RCC_T10--4	chr1:114246738	G	A	141	0.348	90	36.733	4.644	49	35.633	7.193	87	46	PHTF1	exonic	synonymous_SNV
RCC_T10--5	chr1:114246738	G	A	160	0.225	124	37.185	6.067	36	36.139	6.330	119	33	PHTF1	exonic	synonymous_SNV
RCC_T10--6	chr1:114246738	G	A	122	0.336	81	37.407	3.974	41	37.976	3.205	78	41	PHTF1	exonic	synonymous_SNV
RCC_T10--7	chr1:114246738	G	A	119	0.151	100	36.430	7.312	18	35.222	9.039	95	16	PHTF1	exonic	synonymous_SNV
RCC_T10--8	chr1:114246738	G	A	176	0.165	147	36.252	6.017	29	36.655	3.405	138	29	PHTF1	exonic	synonymous_SNV
RCC_T10--GL	chr1:114246738	G	NA	177	0	177	35.130	9.303	0	0	0	160	0	PHTF1	exonic	synonymous_SNV
RCC_T10--1	chr11:18739511	C	G	202	0.099	181	35.282	8.573	20	37.250	4.411	163	18	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--2	chr11:18739511	C	G	167	0.263	123	36.293	6.414	44	36.023	6.359	119	42	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--3	chr11:18739511	C	G	174	0.086	158	36.272	6.951	15	36.733	4.682	147	14	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--4	chr11:18739511	C	G	196	0.362	125	36.464	5.225	71	35.732	7.683	116	68	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--5	chr11:18739511	C	G	208	0.269	152	35.401	6.648	56	36.250	8.302	136	53	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--6	chr11:18739511	C	G	168	0.339	111	36.315	8.040	57	33.772	10.714	105	49	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--7	chr11:18739511	C	G	156	0.205	124	35.871	7.151	32	35.250	8.004	113	30	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--8	chr11:18739511	C	G	194	0.258	142	35.768	7.351	50	36.360	5.900	132	49	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--GL	chr11:18739511	C	NA	218	0	217	35.166	8.373	0	0	0	197	0	IGSF22	exonic	nonsynonymous_SNV
RCC_T10--1	chr11:19854089	G	T	206	0.073	190	36.121	6.350	15	37.267	3.127	175	15	NAV2	exonic	nonsynonymous_SNV
RCC_T10--2	chr11:19854089	G	T	199	0.256	147	36.537	6.542	51	35.078	8.765	139	47	NAV2	exonic	nonsynonymous_SNV
RCC_T10--3	chr11:19854089	G	T	229	0.074	211	36.341	6.719	17	34.647	9.013	198	16	NAV2	exonic	nonsynonymous_SNV
RCC_T10--4	chr11:19854089	G	T	181	0.204	143	34.566	8.842	37	35.000	6.164	128	33	NAV2	exonic	nonsynonymous_SNV
RCC_T10--5	chr11:19854089	G	T	207	0.227	159	35.767	6.887	47	36.383	6.049	151	44	NAV2	exonic	nonsynonymous_SNV
RCC_T10--6	chr11:19854089	G	T	154	0.266	112	35.705	7.624	41	35.024	8.278	100	37	NAV2	exonic	nonsynonymous_SNV
RCC_T10--7	chr11:19854089	G	T	146	0.082	132	35.879	6.513	12	36.917	4.209	123	11	NAV2	exonic	nonsynonymous_SNV
RCC_T10--8	chr11:19854089	G	T	231	0.190	185	35.795	7.445	44	33.750	8.269	170	39	NAV2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr11:19854089	G	NA	242	0	241	33.705	8.973	0	0	0	199	0	NAV2	exonic	nonsynonymous_SNV
RCC_T10--1	chr11:2909814	C	NA	70	0	69	36.681	5.892	0	0	0	62	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--2	chr11:2909814	C	G	55	0.309	38	36.342	3.947	17	37.765	3.545	36	16	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--3	chr11:2909814	C	NA	83	0	83	37.241	3.470	0	0	0	81	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--4	chr11:2909814	C	NA	60	0	60	35.167	7.263	0	0	0	54	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--5	chr11:2909814	C	NA	86	0	86	35.512	7.469	0	0	0	78	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--6	chr11:2909814	C	NA	87	0	87	36.184	5.535	0	0	0	82	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--7	chr11:2909814	C	NA	74	0	74	36.392	3.667	0	0	0	71	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--8	chr11:2909814	C	NA	90	0	90	35.833	6.673	0	0	0	83	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--GL	chr11:2909814	C	NA	73	0	73	34.288	7.747	0	0	0	67	0	SLC22A18AS	exonic	nonsynonymous_SNV
RCC_T10--1	chr11:46397279	C	NA	51	0	51	34.824	6.042	0	0	0	47	0	DGKZ	intronic	NA
RCC_T10--2	chr11:46397279	C	NA	59	0	58	33.483	9.407	0	0	0	51	0	DGKZ	intronic	NA
RCC_T10--3	chr11:46397279	C	NA	64	0	61	35.803	5.907	0	0	0	57	0	DGKZ	intronic	NA
RCC_T10--4	chr11:46397279	C	T	45	0.067	42	35.810	6.830	3	32.333	7.024	40	2	DGKZ	intronic	NA
RCC_T10--5	chr11:46397279	C	T	72	0.347	46	36.152	7.162	25	34.760	6.385	43	24	DGKZ	intronic	NA
RCC_T10--6	chr11:46397279	C	T	47	0.213	37	33.811	10.063	10	32.500	11.257	34	9	DGKZ	intronic	NA
RCC_T10--7	chr11:46397279	C	T	57	0.193	46	32.717	10.432	11	36.091	3.910	39	11	DGKZ	intronic	NA
RCC_T10--8	chr11:46397279	C	T	59	0.203	46	34.609	5.335	12	37.083	3.801	40	12	DGKZ	intronic	NA
RCC_T10--GL	chr11:46397279	C	NA	53	0	52	32.519	8.466	0	0	0	42	0	DGKZ	intronic	NA
RCC_T10--1	chr1:154401900	C	A	73	0.055	68	35.029	7.845	4	28.750	17.914	64	3	IL6R	exonic	nonsynonymous_SNV
RCC_T10--2	chr1:154401900	C	A	78	0.269	57	35.368	8.230	21	36.905	2.663	52	21	IL6R	exonic	nonsynonymous_SNV
RCC_T10--3	chr1:154401900	C	A	81	0.099	72	35.361	6.008	8	31.625	12.141	67	7	IL6R	exonic	nonsynonymous_SNV
RCC_T10--4	chr1:154401900	C	A	70	0.229	54	36.111	4.320	16	32.438	8.702	50	14	IL6R	exonic	nonsynonymous_SNV
RCC_T10--5	chr1:154401900	C	A	77	0.234	58	36.483	4.053	18	35.278	9.987	55	16	IL6R	exonic	nonsynonymous_SNV
RCC_T10--6	chr1:154401900	C	A	70	0.343	45	35.244	6.596	24	34.250	8.794	43	20	IL6R	exonic	nonsynonymous_SNV
RCC_T10--7	chr1:154401900	C	A	64	0.156	54	35.556	7.424	10	35.900	3.542	51	10	IL6R	exonic	nonsynonymous_SNV
RCC_T10--8	chr1:154401900	C	A	90	0.289	64	33.922	7.977	26	36.308	4.881	54	25	IL6R	exonic	nonsynonymous_SNV
RCC_T10--GL	chr1:154401900	C	NA	64	0	64	33.375	9.524	0	0	0	54	0	IL6R	exonic	nonsynonymous_SNV
RCC_T10--1	chr11:56065077	G	NA	26	0	26	38.923	4.698	0	0	0	25	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--2	chr11:56065077	G	C	30	0.300	21	38.667	2.763	9	37.778	3.833	21	9	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--3	chr11:56065077	G	NA	30	0	30	39.200	3.357	0	0	0	29	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--4	chr11:56065077	G	NA	42	0	42	38.643	3.427	0	0	0	41	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--5	chr11:56065077	G	NA	51	0	51	39.294	2.033	0	0	0	51	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--6	chr11:56065077	G	NA	33	0	33	38.424	6.888	0	0	0	32	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--7	chr11:56065077	G	NA	29	0	29	37.483	6.231	0	0	0	28	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--8	chr11:56065077	G	NA	32	0	32	37.281	7.172	0	0	0	31	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--GL	chr11:56065077	G	NA	50	0	50	38.520	2.794	0	0	0	50	0	OR8H1(dist=6539),OR8K3(dist=20706)	intergenic	NA
RCC_T10--1	chr11:62606767	G	T	154	0.078	142	33.380	7.274	12	28.833	6.337	123	6	WDR74	intronic	NA
RCC_T10--2	chr11:62606767	G	T	137	0.321	91	31.033	10.454	44	31.182	8.292	73	31	WDR74	intronic	NA
RCC_T10--3	chr11:62606767	G	T	187	0.064	175	33.434	6.699	12	32.250	6.384	149	9	WDR74	intronic	NA
RCC_T10--4	chr11:62606767	G	T	156	0.301	109	30.688	9.104	47	29.426	8.134	84	31	WDR74	intronic	NA
RCC_T10--5	chr11:62606767	G	T	156	0.288	111	32.784	8.564	45	29.756	11.272	94	31	WDR74	intronic	NA
RCC_T10--6	chr11:62606767	G	T	134	0.366	83	32.084	8.272	49	30.306	7.197	66	32	WDR74	intronic	NA
RCC_T10--7	chr11:62606767	G	T	137	0.182	111	32.450	8.802	25	30.200	12.410	88	19	WDR74	intronic	NA
RCC_T10--8	chr11:62606767	G	T	177	0.232	135	31.459	10.474	41	31.463	8.541	110	33	WDR74	intronic	NA
RCC_T10--GL	chr11:62606767	G	NA	115	0	115	26.339	12.451	0	0	0	66	0	WDR74	intronic	NA
RCC_T10--1	chr11:68305416	A	NA	53	0	53	37.585	5.253	0	0	0	51	0	PPP6R3	intronic	NA
RCC_T10--2	chr11:68305416	A	G	44	0.386	27	36.926	7.651	17	37.529	3.262	25	17	PPP6R3	intronic	NA
RCC_T10--3	chr11:68305416	A	NA	67	0	67	34.522	10.365	0	0	0	60	0	PPP6R3	intronic	NA
RCC_T10--4	chr11:68305416	A	NA	73	0	73	37.411	3.135	0	0	0	72	0	PPP6R3	intronic	NA
RCC_T10--5	chr11:68305416	A	NA	63	0	63	37.857	4.003	0	0	0	61	0	PPP6R3	intronic	NA
RCC_T10--6	chr11:68305416	A	NA	40	0	40	35.550	8.866	0	0	0	37	0	PPP6R3	intronic	NA
RCC_T10--7	chr11:68305416	A	NA	39	0	39	38.385	3.200	0	0	0	39	0	PPP6R3	intronic	NA
RCC_T10--8	chr11:68305416	A	NA	77	0	77	35.961	7.474	0	0	0	70	0	PPP6R3	intronic	NA
RCC_T10--GL	chr11:68305416	A	NA	83	0	83	35.747	6.839	0	0	0	77	0	PPP6R3	intronic	NA
RCC_T10--1	chr1:207075037	C	NA	81	0	81	36.543	7.578	0	0	0	76	0	IL24	intronic	NA
RCC_T10--2	chr1:207075037	C	NA	84	0	83	37.627	3.424	0	0	0	81	0	IL24	intronic	NA
RCC_T10--3	chr1:207075037	C	A	97	0.010	96	36.833	6.754	1	37.000	0.000	90	1	IL24	intronic	NA
RCC_T10--4	chr1:207075037	C	A	85	0.141	73	37.658	3.599	12	37.333	3.393	72	12	IL24	intronic	NA
RCC_T10--5	chr1:207075037	C	A	92	0.391	56	36.821	5.896	36	37.972	6.851	54	35	IL24	intronic	NA
RCC_T10--6	chr1:207075037	C	A	63	0.238	48	36.792	5.989	15	34.667	9.469	46	14	IL24	intronic	NA
RCC_T10--7	chr1:207075037	C	A	81	0.111	72	36.306	6.330	9	38.667	2.500	67	9	IL24	intronic	NA
RCC_T10--8	chr1:207075037	C	A	109	0.046	104	35.452	8.217	5	38.200	3.114	96	5	IL24	intronic	NA
RCC_T10--GL	chr1:207075037	C	NA	96	0	96	34.562	9.494	0	0	0	82	0	IL24	intronic	NA
RCC_T10--1	chr1:209807915	C	A	113	0.088	103	35.650	7.079	10	37.200	3.853	95	9	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--2	chr1:209807915	C	A	95	0.337	63	35.667	8.309	32	36.688	3.939	58	31	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--3	chr1:209807915	C	A	110	0.073	102	37.569	3.627	8	36.125	2.696	100	8	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--4	chr1:209807915	C	A	89	0.258	66	34.515	10.887	23	37.870	3.634	59	22	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--5	chr1:209807915	C	A	92	0.239	70	36.071	6.916	22	36.909	3.490	65	21	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--6	chr1:209807915	C	A	118	0.305	82	36.000	6.882	36	33.778	10.445	76	31	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--7	chr1:209807915	C	A	98	0.163	82	34.366	8.304	16	37.062	2.977	72	16	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--8	chr1:209807915	C	A	117	0.299	82	36.073	6.751	35	37.886	2.867	76	35	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr1:209807915	C	NA	102	0	102	34.049	8.758	0	0	0	88	0	LAMB3	exonic	nonsynonymous_SNV
RCC_T10--1	chr12:10264839	G	NA	19	0	19	37.526	2.632	0	0	0	19	0	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--2	chr12:10264839	G	NA	28	0	28	37.179	3.244	0	0	0	28	0	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--3	chr12:10264839	G	NA	35	0	35	37.943	3.970	0	0	0	33	0	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--4	chr12:10264839	G	T	27	0.037	26	37.692	3.792	1	37.000	0.000	24	1	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--5	chr12:10264839	G	T	35	0.314	24	36.042	8.003	11	37.364	6.470	23	10	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--6	chr12:10264839	G	T	24	0.125	21	38.143	3.054	3	38.667	2.517	21	3	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--7	chr12:10264839	G	T	35	0.114	31	38.129	3.462	4	38.750	2.630	30	4	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--8	chr12:10264839	G	T	32	0.250	24	38.417	2.569	8	38.625	3.335	24	8	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--GL	chr12:10264839	G	NA	57	0	56	37.393	5.842	0	0	0	53	0	CLEC1A(dist=13234),CLEC7A(dist=4537)	intergenic	NA
RCC_T10--1	chr12:109971772	G	A	82	0.134	70	33.229	9.660	11	36.364	4.567	61	10	UBE3B	intronic	NA
RCC_T10--2	chr12:109971772	G	A	80	0.263	59	35.153	5.985	21	36.048	4.189	53	19	UBE3B	intronic	NA
RCC_T10--3	chr12:109971772	G	A	92	0.054	87	33.149	9.451	5	37.200	3.271	71	5	UBE3B	intronic	NA
RCC_T10--4	chr12:109971772	G	A	80	0.338	50	33.000	9.528	27	34.926	5.909	42	25	UBE3B	intronic	NA
RCC_T10--5	chr12:109971772	G	A	106	0.311	73	32.603	9.389	33	35.152	7.563	58	29	UBE3B	intronic	NA
RCC_T10--6	chr12:109971772	G	A	57	0.263	42	33.929	8.289	15	37.200	3.278	34	15	UBE3B	intronic	NA
RCC_T10--7	chr12:109971772	G	A	81	0.136	69	30.681	11.823	11	34.727	6.278	55	10	UBE3B	intronic	NA
RCC_T10--8	chr12:109971772	G	A	104	0.135	89	33.618	8.645	14	35.143	9.929	75	13	UBE3B	intronic	NA
RCC_T10--GL	chr12:109971772	G	NA	91	0	89	30.337	11.704	0	0	0	65	0	UBE3B	intronic	NA
RCC_T10--1	chr12:120582478	G	A	214	0.121	188	37.420	5.065	26	38.654	2.799	181	26	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--2	chr12:120582478	G	A	172	0.326	116	37.474	4.617	56	37.750	3.829	109	55	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--3	chr12:120582478	G	A	226	0.053	214	35.855	8.238	12	36.167	6.726	198	11	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--4	chr12:120582478	G	A	194	0.304	134	35.209	8.036	59	35.983	8.478	122	55	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--5	chr12:120582478	G	A	192	0.250	144	36.590	5.889	48	37.771	2.860	135	48	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--6	chr12:120582478	G	A	150	0.367	95	38.242	3.426	55	37.200	6.084	92	51	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--7	chr12:120582478	G	A	197	0.168	164	36.317	7.572	33	36.212	7.660	155	31	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--8	chr12:120582478	G	A	296	0.172	244	36.795	6.134	51	37.020	5.995	229	50	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--GL	chr12:120582478	G	NA	192	0	191	36.152	5.859	0	0	0	175	0	GCN1L1	exonic	nonsynonymous_SNV
RCC_T10--1	chr12:133425057	C	A	55	0.164	46	36.717	6.659	9	37.889	2.804	43	9	CHFR	intronic	NA
RCC_T10--2	chr12:133425057	C	A	42	0.381	26	36.769	7.742	16	38.250	3.235	25	16	CHFR	intronic	NA
RCC_T10--3	chr12:133425057	C	A	42	0.143	35	37.200	6.851	6	37.333	3.830	34	6	CHFR	intronic	NA
RCC_T10--4	chr12:133425057	C	A	36	0.389	22	37.955	3.618	14	38.000	2.801	21	14	CHFR	intronic	NA
RCC_T10--5	chr12:133425057	C	A	54	0.278	39	36.462	6.508	15	37.800	2.569	37	15	CHFR	intronic	NA
RCC_T10--6	chr12:133425057	C	A	44	0.545	20	36.600	3.747	24	36.208	8.460	19	22	CHFR	intronic	NA
RCC_T10--7	chr12:133425057	C	A	45	0.067	42	35.786	6.520	3	37.667	1.155	38	3	CHFR	intronic	NA
RCC_T10--8	chr12:133425057	C	A	32	0.219	25	36.760	5.349	7	39.857	1.676	22	7	CHFR	intronic	NA
RCC_T10--GL	chr12:133425057	C	NA	58	0	58	34.431	9.939	0	0	0	51	0	CHFR	intronic	NA
RCC_T10--1	chr1:23762513	C	NA	224	0	221	35.810	6.331	0	0	0	203	0	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--2	chr1:23762513	C	NA	201	0	201	34.925	7.015	0	0	0	184	0	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--3	chr1:23762513	C	NA	239	0	238	35.218	7.685	0	0	0	217	0	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--4	chr1:23762513	C	T	178	0.073	164	34.866	7.838	13	34.308	6.511	151	12	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--5	chr1:23762513	C	T	195	0.226	150	34.107	9.688	44	36.932	3.763	133	43	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--6	chr1:23762513	C	T	151	0.219	116	34.836	8.244	33	35.303	6.908	104	31	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--7	chr1:23762513	C	T	181	0.138	155	35.219	6.562	25	31.920	10.551	143	21	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--8	chr1:23762513	C	T	206	0.267	149	34.027	8.937	55	35.055	6.246	132	50	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr1:23762513	C	NA	181	0	181	33.796	7.941	0	0	0	156	0	ASAP3	exonic	nonsynonymous_SNV
RCC_T10--1	chr12:53069470	C	NA	237	0	236	36.297	6.642	0	0	0	221	0	KRT1	intronic	NA
RCC_T10--2	chr12:53069470	C	NA	223	0	222	35.928	6.644	0	0	0	206	0	KRT1	intronic	NA
RCC_T10--3	chr12:53069470	C	NA	269	0	267	35.255	8.516	0	0	0	240	0	KRT1	intronic	NA
RCC_T10--4	chr12:53069470	C	T	209	0.091	189	35.344	7.511	19	35.789	8.696	170	18	KRT1	intronic	NA
RCC_T10--5	chr12:53069470	C	T	220	0.214	172	36.285	7.410	47	36.000	5.786	161	43	KRT1	intronic	NA
RCC_T10--6	chr12:53069470	C	T	166	0.133	144	36.257	5.692	22	36.500	3.925	134	21	KRT1	intronic	NA
RCC_T10--7	chr12:53069470	C	T	196	0.143	167	35.443	8.040	28	36.250	5.481	153	25	KRT1	intronic	NA
RCC_T10--8	chr12:53069470	C	NA	281	0	281	36.221	7.191	0	0	0	260	0	KRT1	intronic	NA
RCC_T10--GL	chr12:53069470	C	NA	267	0	265	34.755	8.513	0	0	0	233	0	KRT1	intronic	NA
RCC_T10--1	chr12:58177053	G	NA	58	0	57	35.509	7.792	0	0	0	53	0	TSFM	exonic	nonsynonymous_SNV
RCC_T10--2	chr12:58177053	G	NA	45	0	45	35.911	6.480	0	0	0	42	0	TSFM	exonic	nonsynonymous_SNV
RCC_T10--3	chr12:58177053	G	NA	52	0	51	37.471	3.035	0	0	0	51	0	TSFM	exonic	nonsynonymous_SNV
RCC_T10--4	chr12:58177053	G	T	39	0.051	37	34.892	8.692	2	28.000	14.142	34	1	TSFM	exonic	nonsynonymous_SNV
RCC_T10--5	chr12:58177053	G	T	64	0.234	49	34.694	8.596	15	35.533	2.416	44	15	TSFM	exonic	nonsynonymous_SNV
RCC_T10--6	chr12:58177053	G	T	43	0.233	33	35.333	7.171	10	33.200	5.391	31	7	TSFM	exonic	nonsynonymous_SNV
RCC_T10--7	chr12:58177053	G	T	57	0.088	52	34.423	7.902	5	36.800	1.095	46	5	TSFM	exonic	nonsynonymous_SNV
RCC_T10--8	chr12:58177053	G	T	60	0.150	51	35.294	7.455	9	37.556	3.087	47	9	TSFM	exonic	nonsynonymous_SNV
RCC_T10--GL	chr12:58177053	G	NA	67	0	66	33.167	10.286	0	0	0	57	0	TSFM	exonic	nonsynonymous_SNV
RCC_T10--1	chr12:70064006	A	G	84	0.083	76	36.658	5.698	7	38.000	3.162	68	7	BEST3	intronic	NA
RCC_T10--2	chr12:70064006	A	G	62	0.355	39	33.359	12.130	22	35.545	9.195	32	19	BEST3	intronic	NA
RCC_T10--3	chr12:70064006	A	G	73	0.055	69	37.058	6.467	4	38.250	3.096	65	4	BEST3	intronic	NA
RCC_T10--4	chr12:70064006	A	G	63	0.206	50	35.520	7.778	13	39.615	2.631	44	13	BEST3	intronic	NA
RCC_T10--5	chr12:70064006	A	NA	78	0	78	36.564	6.438	0	0	0	76	0	BEST3	intronic	NA
RCC_T10--6	chr12:70064006	A	G	55	0.145	47	36.681	6.407	8	35.125	7.180	43	6	BEST3	intronic	NA
RCC_T10--7	chr12:70064006	A	NA	70	0	70	37.214	4.149	0	0	0	67	0	BEST3	intronic	NA
RCC_T10--8	chr12:70064006	A	NA	108	0	108	36.231	7.067	0	0	0	99	0	BEST3	intronic	NA
RCC_T10--GL	chr12:70064006	A	NA	77	0	77	36.675	5.449	0	0	0	71	0	BEST3	intronic	NA
RCC_T10--1	chr13:113742528	C	NA	52	0	51	33.863	7.217	0	0	0	44	0	MCF2L	intronic	NA
RCC_T10--2	chr13:113742528	C	NA	39	0	39	33.333	9.799	0	0	0	32	0	MCF2L	intronic	NA
RCC_T10--3	chr13:113742528	C	NA	74	0	73	32.342	9.929	0	0	0	62	0	MCF2L	intronic	NA
RCC_T10--4	chr13:113742528	C	A	50	0.080	46	33.804	7.547	4	28.750	18.062	41	3	MCF2L	intronic	NA
RCC_T10--5	chr13:113742528	C	A	59	0.203	47	33.106	9.604	12	35.250	5.895	42	11	MCF2L	intronic	NA
RCC_T10--6	chr13:113742528	C	A	55	0.109	49	34.959	6.034	6	36.667	2.422	45	6	MCF2L	intronic	NA
RCC_T10--7	chr13:113742528	C	A	44	0.091	40	33.150	9.239	4	36.500	2.380	34	4	MCF2L	intronic	NA
RCC_T10--8	chr13:113742528	C	A	56	0.411	33	35.030	7.397	23	32.348	9.722	29	20	MCF2L	intronic	NA
RCC_T10--GL	chr13:113742528	C	NA	45	0	45	34.911	6.306	0	0	0	42	0	MCF2L	intronic	NA
RCC_T10--1	chr1:31409727	C	NA	60	0	33	35.758	7.353	0	0	0	30	0	PUM1	intronic	NA
RCC_T10--2	chr1:31409727	C	G	54	0.037	28	34.286	8.379	2	30.000	1.414	22	1	PUM1	intronic	NA
RCC_T10--3	chr1:31409727	C	G	80	0.037	39	34.949	6.813	3	31.667	2.082	35	3	PUM1	intronic	NA
RCC_T10--4	chr1:31409727	C	NA	72	0	30	35.133	7.811	0	0	0	26	0	PUM1	intronic	NA
RCC_T10--5	chr1:31409727	C	G	71	0.014	41	36.854	3.739	1	31.000	0.000	40	1	PUM1	intronic	NA
RCC_T10--6	chr1:31409727	C	NA	51	0	28	37.679	3.432	0	0	0	28	0	PUM1	intronic	NA
RCC_T10--7	chr1:31409727	C	G	60	0.100	30	36.800	5.061	6	32.500	3.017	27	5	PUM1	intronic	NA
RCC_T10--8	chr1:31409727	C	G	72	0.042	35	35.371	7.554	3	32.667	3.215	33	2	PUM1	intronic	NA
RCC_T10--GL	chr1:31409727	C	NA	73	0	42	35.429	5.588	0	0	0	40	0	PUM1	intronic	NA
RCC_T10--1	chr13:25276214	G	NA	69	0	69	37.130	6.977	0	0	0	65	0	ATP12A	intronic	NA
RCC_T10--2	chr13:25276214	G	NA	53	0	53	37.868	3.514	0	0	0	52	0	ATP12A	intronic	NA
RCC_T10--3	chr13:25276214	G	NA	70	0	70	36.600	5.986	0	0	0	65	0	ATP12A	intronic	NA
RCC_T10--4	chr13:25276214	G	NA	90	0	89	36.607	6.050	0	0	0	82	0	ATP12A	intronic	NA
RCC_T10--5	chr13:25276214	G	NA	57	0	57	35.807	7.786	0	0	0	52	0	ATP12A	intronic	NA
RCC_T10--6	chr13:25276214	G	A	53	0.208	42	37.524	3.684	11	36.273	3.875	40	10	ATP12A	intronic	NA
RCC_T10--7	chr13:25276214	G	A	67	0.015	64	35.438	8.094	1	39.000	0.000	60	1	ATP12A	intronic	NA
RCC_T10--8	chr13:25276214	G	NA	80	0	80	36.712	6.553	0	0	0	73	0	ATP12A	intronic	NA
RCC_T10--GL	chr13:25276214	G	NA	75	0	75	36.427	5.416	0	0	0	73	0	ATP12A	intronic	NA
RCC_T10--1	chr13:77748486	T	G	71	0.014	69	36.391	5.526	1	31.000	0.000	66	1	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--2	chr13:77748486	T	G	69	0.217	54	37.185	3.782	15	37.600	2.230	52	15	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--3	chr13:77748486	T	NA	77	0	77	37.013	5.228	0	0	0	75	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--4	chr13:77748486	T	NA	78	0	78	37.115	5.014	0	0	0	76	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--5	chr13:77748486	T	NA	82	0	82	35.878	7.545	0	0	0	75	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--6	chr13:77748486	T	NA	52	0	52	37.096	5.439	0	0	0	49	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--7	chr13:77748486	T	NA	53	0	52	35.385	9.135	0	0	0	48	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--8	chr13:77748486	T	NA	125	0	125	36.304	6.186	0	0	0	116	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr13:77748486	T	NA	100	0	100	35.640	6.417	0	0	0	94	0	MYCBP2	exonic	nonsynonymous_SNV
RCC_T10--1	chr14:106919318	G	NA	36	0	36	36.250	3.850	0	0	0	35	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--2	chr14:106919318	G	A	26	0.192	21	38.000	3.130	5	37.000	3.674	21	5	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--3	chr14:106919318	G	NA	32	0	32	37.219	4.046	0	0	0	31	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--4	chr14:106919318	G	NA	24	0	24	36.792	3.845	0	0	0	23	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--5	chr14:106919318	G	NA	28	0	28	37.429	3.144	0	0	0	28	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--6	chr14:106919318	G	NA	23	0	23	36.739	3.292	0	0	0	22	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--7	chr14:106919318	G	NA	28	0	28	35.464	7.224	0	0	0	26	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--8	chr14:106919318	G	NA	37	0	37	35.811	5.887	0	0	0	34	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--GL	chr14:106919318	G	NA	34	0	34	36.324	3.835	0	0	0	32	0	LINC00226(dist=174352),LINC00221(dist=19127)	intergenic	NA
RCC_T10--1	chr14:24610060	C	NA	266	0	264	33.674	9.701	0	0	0	232	0	EMC9	intronic	NA
RCC_T10--2	chr14:24610060	C	T	287	0.282	205	34.015	9.187	81	32.173	10.521	181	62	EMC9	intronic	NA
RCC_T10--3	chr14:24610060	C	NA	319	0	318	33.305	9.859	0	0	0	272	0	EMC9	intronic	NA
RCC_T10--4	chr14:24610060	C	NA	241	0	241	33.054	10.811	0	0	0	203	0	EMC9	intronic	NA
RCC_T10--5	chr14:24610060	C	T	283	0.004	282	33.652	9.315	1	38.000	0.000	247	1	EMC9	intronic	NA
RCC_T10--6	chr14:24610060	C	NA	256	0	255	34.212	9.062	0	0	0	225	0	EMC9	intronic	NA
RCC_T10--7	chr14:24610060	C	NA	265	0	262	34.401	8.698	0	0	0	238	0	EMC9	intronic	NA
RCC_T10--8	chr14:24610060	C	NA	255	0	255	33.745	9.266	0	0	0	219	0	EMC9	intronic	NA
RCC_T10--GL	chr14:24610060	C	NA	282	0	278	32.079	11.522	0	0	0	223	0	EMC9	intronic	NA
RCC_T10--1	chr14:24838993	C	T	98	0.143	84	34.750	7.279	14	34.643	2.678	77	13	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--2	chr14:24838993	C	NA	84	0	84	35.405	5.584	0	0	0	79	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--3	chr14:24838993	C	NA	89	0	89	35.584	5.504	0	0	0	82	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--4	chr14:24838993	C	NA	82	0	82	35.268	7.472	0	0	0	75	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--5	chr14:24838993	C	NA	94	0	94	33.915	7.908	0	0	0	83	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--6	chr14:24838993	C	NA	84	0	84	33.286	8.272	0	0	0	71	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--7	chr14:24838993	C	NA	73	0	73	34.562	6.912	0	0	0	64	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--8	chr14:24838993	C	NA	128	0	128	34.266	6.475	0	0	0	116	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--GL	chr14:24838993	C	NA	61	0	61	31.705	10.727	0	0	0	50	0	NFATC4	exonic	nonsynonymous_SNV
RCC_T10--1	chr14:50141129	T	NA	47	0	47	38.298	2.386	0	0	0	47	0	POLE2	exonic	nonsynonymous_SNV
RCC_T10--2	chr14:50141129	T	NA	41	0	41	36.146	7.654	0	0	0	38	0	POLE2	exonic	nonsynonymous_SNV
RCC_T10--3	chr14:50141129	T	NA	43	0	43	37.977	3.481	0	0	0	41	0	POLE2	exonic	nonsynonymous_SNV
RCC_T10--4	chr14:50141129	T	A	44	0.091	40	34.825	9.190	4	32.500	9.469	36	3	POLE2	exonic	nonsynonymous_SNV
RCC_T10--5	chr14:50141129	T	A	52	0.250	39	37.769	3.166	13	35.923	6.958	38	11	POLE2	exonic	nonsynonymous_SNV
RCC_T10--6	chr14:50141129	T	A	49	0.245	37	38.135	2.750	12	37.917	3.848	37	12	POLE2	exonic	nonsynonymous_SNV
RCC_T10--7	chr14:50141129	T	A	45	0.178	36	35.722	8.379	8	37.000	7.653	32	7	POLE2	exonic	nonsynonymous_SNV
RCC_T10--8	chr14:50141129	T	A	67	0.269	49	37.143	5.962	18	38.111	3.394	47	18	POLE2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr14:50141129	T	NA	88	0	88	37.682	3.004	0	0	0	86	0	POLE2	exonic	nonsynonymous_SNV
RCC_T10--1	chr14:64909264	C	NA	30	0	30	37.733	2.959	0	0	0	29	0	MIR548AZ	ncRNA_intronic	NA
RCC_T10--2	chr14:64909264	C	A	41	0.195	33	37.030	4.620	8	37.375	2.774	31	8	MIR548AZ	ncRNA_intronic	NA
RCC_T10--3	chr14:64909264	C	A	31	0.065	29	36.931	4.301	2	39.000	2.828	28	2	MIR548AZ	ncRNA_intronic	NA
RCC_T10--4	chr14:64909264	C	A	43	0.279	30	37.233	7.108	12	38.250	3.108	29	12	MIR548AZ	ncRNA_intronic	NA
RCC_T10--5	chr14:64909264	C	A	27	0.222	21	38.762	2.844	6	39.000	3.162	21	6	MIR548AZ	ncRNA_intronic	NA
RCC_T10--6	chr14:64909264	C	A	36	0.333	24	37.375	4.322	12	36.500	6.274	23	11	MIR548AZ	ncRNA_intronic	NA
RCC_T10--7	chr14:64909264	C	A	43	0.140	37	34.189	9.577	6	34.167	5.492	31	5	MIR548AZ	ncRNA_intronic	NA
RCC_T10--8	chr14:64909264	C	A	57	0.263	42	36.381	6.593	15	36.867	4.438	40	14	MIR548AZ	ncRNA_intronic	NA
RCC_T10--GL	chr14:64909264	C	NA	51	0	51	36.275	5.311	0	0	0	47	0	MIR548AZ	ncRNA_intronic	NA
RCC_T10--1	chr14:74524204	G	NA	45	0	45	37.644	3.779	0	0	0	43	0	CCDC176	intronic	NA
RCC_T10--2	chr14:74524204	G	NA	47	0	47	37.064	8.074	0	0	0	44	0	CCDC176	intronic	NA
RCC_T10--3	chr14:74524204	G	NA	49	0	48	37.938	4.875	0	0	0	47	0	CCDC176	intronic	NA
RCC_T10--4	chr14:74524204	G	A	49	0.061	46	38.304	6.214	3	40.000	1.000	44	3	CCDC176	intronic	NA
RCC_T10--5	chr14:74524204	G	A	61	0.230	47	36.553	8.021	14	38.857	2.381	44	14	CCDC176	intronic	NA
RCC_T10--6	chr14:74524204	G	A	42	0.262	31	37.645	4.215	11	35.545	11.527	29	10	CCDC176	intronic	NA
RCC_T10--7	chr14:74524204	G	A	43	0.163	36	38.194	3.883	7	38.571	2.637	33	7	CCDC176	intronic	NA
RCC_T10--8	chr14:74524204	G	A	59	0.288	41	36.341	8.782	17	39.059	2.609	36	17	CCDC176	intronic	NA
RCC_T10--GL	chr14:74524204	G	NA	64	0	64	37.688	5.640	0	0	0	62	0	CCDC176	intronic	NA
RCC_T10--1	chr14:95923475	C	A	54	0.037	40	28.225	16.560	2	34.000	0.000	29	2	SYNE3	intronic	NA
RCC_T10--2	chr14:95923475	C	A	50	0.040	33	29.455	14.992	2	34.500	0.707	24	2	SYNE3	intronic	NA
RCC_T10--3	chr14:95923475	C	NA	44	0	37	29.757	14.381	0	0	0	27	0	SYNE3	intronic	NA
RCC_T10--4	chr14:95923475	C	A	37	0.135	24	23.500	18.094	5	34.200	2.168	14	5	SYNE3	intronic	NA
RCC_T10--5	chr14:95923475	C	NA	62	0	45	29.022	15.141	0	0	0	32	0	SYNE3	intronic	NA
RCC_T10--6	chr14:95923475	C	A	50	0.020	40	29.000	15.211	1	37.000	0.000	29	1	SYNE3	intronic	NA
RCC_T10--7	chr14:95923475	C	NA	43	0	31	29.323	14.230	0	0	0	22	0	SYNE3	intronic	NA
RCC_T10--8	chr14:95923475	C	NA	72	0	56	27.875	16.224	0	0	0	38	0	SYNE3	intronic	NA
RCC_T10--GL	chr14:95923475	C	NA	61	0	45	29.489	13.433	0	0	0	32	0	SYNE3	intronic	NA
RCC_T10--1	chr16:1396201	G	NA	80	0	80	34.375	9.297	0	0	0	72	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--2	chr16:1396201	G	NA	73	0	72	34.208	8.340	0	0	0	64	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--3	chr16:1396201	G	NA	85	0	84	36.643	3.917	0	0	0	82	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--4	chr16:1396201	G	NA	74	0	74	35.473	7.048	0	0	0	67	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--5	chr16:1396201	G	NA	85	0	85	34.106	9.192	0	0	0	74	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--6	chr16:1396201	G	A	69	0.261	49	34.388	7.839	18	33.556	11.873	40	16	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--7	chr16:1396201	G	NA	79	0	79	34.785	8.667	0	0	0	69	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--8	chr16:1396201	G	NA	96	0	96	35.177	8.529	0	0	0	85	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr16:1396201	G	NA	62	0	62	34.290	7.077	0	0	0	53	0	BAIAP3	exonic	nonsynonymous_SNV
RCC_T10--1	chr16:2136795	A	T	111	0.117	96	36.490	4.620	13	35.154	5.535	93	11	TSC2	exonic	stopgain_SNV
RCC_T10--2	chr16:2136795	A	T	103	0.272	74	35.027	8.527	28	34.000	9.661	68	22	TSC2	exonic	stopgain_SNV
RCC_T10--3	chr16:2136795	A	T	136	0.066	126	35.746	6.486	9	34.222	6.220	117	7	TSC2	exonic	stopgain_SNV
RCC_T10--4	chr16:2136795	A	T	95	0.137	82	36.610	3.537	13	35.385	4.445	79	11	TSC2	exonic	stopgain_SNV
RCC_T10--5	chr16:2136795	A	NA	101	0	99	35.364	7.500	0	0	0	89	0	TSC2	exonic	stopgain_SNV
RCC_T10--6	chr16:2136795	A	T	73	0.110	65	35.292	8.767	8	34.500	4.175	60	7	TSC2	exonic	stopgain_SNV
RCC_T10--7	chr16:2136795	A	NA	87	0	86	35.337	5.370	0	0	0	79	0	TSC2	exonic	stopgain_SNV
RCC_T10--8	chr16:2136795	A	NA	125	0	124	35.435	7.330	0	0	0	114	0	TSC2	exonic	stopgain_SNV
RCC_T10--GL	chr16:2136795	A	NA	99	0	98	32.776	8.519	0	0	0	78	0	TSC2	exonic	stopgain_SNV
RCC_T10--1	chr16:28507899	G	NA	51	0	51	35.314	6.345	0	0	0	46	0	APOBR	exonic	stopgain_SNV
RCC_T10--2	chr16:28507899	G	T	25	0.280	18	33.667	9.616	7	35.857	2.116	15	7	APOBR	exonic	stopgain_SNV
RCC_T10--3	chr16:28507899	G	NA	45	0	45	36.311	6.241	0	0	0	43	0	APOBR	exonic	stopgain_SNV
RCC_T10--4	chr16:28507899	G	NA	44	0	44	33.114	11.035	0	0	0	36	0	APOBR	exonic	stopgain_SNV
RCC_T10--5	chr16:28507899	G	NA	52	0	52	36.269	3.846	0	0	0	50	0	APOBR	exonic	stopgain_SNV
RCC_T10--6	chr16:28507899	G	NA	38	0	38	34.132	8.872	0	0	0	34	0	APOBR	exonic	stopgain_SNV
RCC_T10--7	chr16:28507899	G	NA	44	0	44	35.091	8.509	0	0	0	38	0	APOBR	exonic	stopgain_SNV
RCC_T10--8	chr16:28507899	G	NA	43	0	43	35.326	8.091	0	0	0	40	0	APOBR	exonic	stopgain_SNV
RCC_T10--GL	chr16:28507899	G	NA	37	0	37	32.486	11.362	0	0	0	31	0	APOBR	exonic	stopgain_SNV
RCC_T10--1	chr16:57788906	A	G	48	0.062	45	36.844	6.285	3	40.333	1.155	43	3	KATNB1	exonic	synonymous_SNV
RCC_T10--2	chr16:57788906	A	G	55	0.291	39	35.436	7.025	16	34.875	9.660	36	14	KATNB1	exonic	synonymous_SNV
RCC_T10--3	chr16:57788906	A	NA	52	0	52	34.519	9.652	0	0	0	46	0	KATNB1	exonic	synonymous_SNV
RCC_T10--4	chr16:57788906	A	G	44	0.364	28	38.000	2.653	16	36.000	4.705	28	15	KATNB1	exonic	synonymous_SNV
RCC_T10--5	chr16:57788906	A	G	57	0.246	42	33.857	9.762	14	30.429	15.683	36	11	KATNB1	exonic	synonymous_SNV
RCC_T10--6	chr16:57788906	A	G	53	0.302	37	35.486	7.647	16	33.625	12.785	31	14	KATNB1	exonic	synonymous_SNV
RCC_T10--7	chr16:57788906	A	G	64	0.125	55	34.636	8.132	8	35.875	2.357	51	8	KATNB1	exonic	synonymous_SNV
RCC_T10--8	chr16:57788906	A	G	55	0.236	42	35.524	5.931	13	34.615	4.331	38	11	KATNB1	exonic	synonymous_SNV
RCC_T10--GL	chr16:57788906	A	NA	81	0	80	34.000	7.874	0	0	0	67	0	KATNB1	exonic	synonymous_SNV
RCC_T10--1	chr16:71604208	C	T	52	0.096	47	37.872	6.078	5	39.200	2.950	45	5	TAT	exonic	synonymous_SNV
RCC_T10--2	chr16:71604208	C	T	46	0.304	32	38.875	2.992	14	37.357	4.031	32	13	TAT	exonic	synonymous_SNV
RCC_T10--3	chr16:71604208	C	T	62	0.081	57	37.158	6.053	5	38.600	0.894	53	5	TAT	exonic	synonymous_SNV
RCC_T10--4	chr16:71604208	C	T	48	0.292	34	37.147	6.711	14	38.929	2.093	33	14	TAT	exonic	synonymous_SNV
RCC_T10--5	chr16:71604208	C	T	44	0.295	31	36.613	2.871	13	33.692	10.617	31	11	TAT	exonic	synonymous_SNV
RCC_T10--6	chr16:71604208	C	T	28	0.286	19	39.105	2.885	8	36.500	4.598	19	8	TAT	exonic	synonymous_SNV
RCC_T10--7	chr16:71604208	C	T	37	0.216	29	34.034	10.394	8	39.625	1.598	25	8	TAT	exonic	synonymous_SNV
RCC_T10--8	chr16:71604208	C	T	67	0.194	54	37.370	5.861	13	34.385	10.071	53	12	TAT	exonic	synonymous_SNV
RCC_T10--GL	chr16:71604208	C	NA	64	0	64	37.438	3.408	0	0	0	62	0	TAT	exonic	synonymous_SNV
RCC_T10--1	chr16:72163286	G	NA	21	0	21	38.333	2.726	0	0	0	21	0	PMFBP1	intronic	NA
RCC_T10--2	chr16:72163286	G	NA	17	0	17	37.941	4.520	0	0	0	16	0	PMFBP1	intronic	NA
RCC_T10--3	chr16:72163286	G	NA	12	0	12	37.000	7.032	0	0	0	11	0	PMFBP1	intronic	NA
RCC_T10--4	chr16:72163286	G	A	18	0.278	13	38.385	5.253	5	33.800	2.775	12	5	PMFBP1	intronic	NA
RCC_T10--5	chr16:72163286	G	NA	27	0	27	37.222	3.004	0	0	0	27	0	PMFBP1	intronic	NA
RCC_T10--6	chr16:72163286	G	NA	21	0	21	38.619	2.854	0	0	0	21	0	PMFBP1	intronic	NA
RCC_T10--7	chr16:72163286	G	NA	19	0	19	38.158	2.853	0	0	0	19	0	PMFBP1	intronic	NA
RCC_T10--8	chr16:72163286	G	NA	22	0	22	38.364	3.774	0	0	0	21	0	PMFBP1	intronic	NA
RCC_T10--GL	chr16:72163286	G	NA	39	0	39	38.436	3.698	0	0	0	38	0	PMFBP1	intronic	NA
RCC_T10--1	chr17:10427955	C	NA	155	0	155	36.755	5.595	0	0	0	148	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--2	chr17:10427955	C	NA	163	0	161	36.627	5.942	0	0	0	156	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--3	chr17:10427955	C	NA	222	0	222	35.982	7.585	0	0	0	206	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--4	chr17:10427955	C	NA	153	0	152	37.092	6.058	0	0	0	146	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--5	chr17:10427955	C	NA	178	0	177	35.672	8.340	0	0	0	161	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--6	chr17:10427955	C	NA	137	0	137	36.766	5.556	0	0	0	132	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--7	chr17:10427955	C	NA	136	0	135	35.378	7.827	0	0	0	124	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--8	chr17:10427955	C	T	152	0.191	122	35.926	7.168	29	35.276	9.665	114	27	MYH2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr17:10427955	C	NA	174	0	174	36.069	5.939	0	0	0	162	0	MYH2	exonic	nonsynonymous_SNV
RCC_T10--1	chr1:77094416	T	NA	95	0	95	37.663	5.058	0	0	0	91	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--2	chr1:77094416	T	NA	74	0	74	37.878	5.192	0	0	0	72	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--3	chr1:77094416	T	NA	88	0	87	37.138	6.264	0	0	0	84	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--4	chr1:77094416	T	NA	73	0	73	37.411	6.629	0	0	0	69	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--5	chr1:77094416	T	NA	55	0	55	37.945	5.606	0	0	0	54	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--6	chr1:77094416	T	G	47	0.149	39	36.974	6.761	7	33.714	11.600	37	6	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--7	chr1:77094416	T	NA	64	0	64	36.312	7.147	0	0	0	60	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--8	chr1:77094416	T	NA	107	0	107	37.430	5.595	0	0	0	101	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--GL	chr1:77094416	T	NA	113	0	113	39.062	2.350	0	0	0	113	0	ST6GALNAC3	exonic	synonymous_SNV
RCC_T10--1	chr17:74036619	G	NA	49	0	48	37.708	3.881	0	0	0	43	0	SRP68	intronic	NA
RCC_T10--2	chr17:74036619	G	NA	55	0	54	36.556	5.732	0	0	0	53	0	SRP68	intronic	NA
RCC_T10--3	chr17:74036619	G	NA	67	0	67	37.448	5.338	0	0	0	65	0	SRP68	intronic	NA
RCC_T10--4	chr17:74036619	G	T	40	0.200	32	37.250	4.127	8	35.625	4.104	31	7	SRP68	intronic	NA
RCC_T10--5	chr17:74036619	G	T	60	0.333	40	35.025	9.158	20	38.150	2.621	36	20	SRP68	intronic	NA
RCC_T10--6	chr17:74036619	G	T	47	0.170	39	37.667	3.666	8	37.875	4.941	38	7	SRP68	intronic	NA
RCC_T10--7	chr17:74036619	G	T	60	0.117	53	35.849	6.413	7	38.857	2.854	47	7	SRP68	intronic	NA
RCC_T10--8	chr17:74036619	G	NA	76	0	76	36.908	4.927	0	0	0	75	0	SRP68	intronic	NA
RCC_T10--GL	chr17:74036619	G	NA	74	0	73	34.288	9.578	0	0	0	64	0	SRP68	intronic	NA
RCC_T10--1	chr18:10794869	T	NA	47	0	47	35.340	7.830	0	0	0	43	0	PIEZO2	exonic	synonymous_SNV
RCC_T10--2	chr18:10794869	T	NA	39	0	39	35.282	8.519	0	0	0	36	0	PIEZO2	exonic	synonymous_SNV
RCC_T10--3	chr18:10794869	T	NA	52	0	52	36.808	3.144	0	0	0	51	0	PIEZO2	exonic	synonymous_SNV
RCC_T10--4	chr18:10794869	T	G	47	0.234	36	36.444	2.922	11	32.909	10.968	36	9	PIEZO2	exonic	synonymous_SNV
RCC_T10--5	chr18:10794869	T	G	70	0.214	55	36.255	3.922	15	36.800	5.414	52	14	PIEZO2	exonic	synonymous_SNV
RCC_T10--6	chr18:10794869	T	G	51	0.196	41	36.537	3.479	10	34.100	9.655	38	9	PIEZO2	exonic	synonymous_SNV
RCC_T10--7	chr18:10794869	T	G	26	0.154	22	35.227	8.194	4	39.000	2.309	21	4	PIEZO2	exonic	synonymous_SNV
RCC_T10--8	chr18:10794869	T	G	58	0.293	41	37.707	2.369	17	37.059	8.050	41	16	PIEZO2	exonic	synonymous_SNV
RCC_T10--GL	chr18:10794869	T	NA	82	0	82	34.512	8.045	0	0	0	72	0	PIEZO2	exonic	synonymous_SNV
RCC_T10--1	chr18:29625525	A	NA	35	0	34	35.500	6.890	0	0	0	33	0	RNF125	intronic	NA
RCC_T10--2	chr18:29625525	A	C	21	0.190	16	37.312	3.281	4	31.500	5.000	16	3	RNF125	intronic	NA
RCC_T10--3	chr18:29625525	A	NA	23	0	22	36.591	6.515	0	0	0	20	0	RNF125	intronic	NA
RCC_T10--4	chr18:29625525	A	NA	25	0	23	38.304	2.476	0	0	0	23	0	RNF125	intronic	NA
RCC_T10--5	chr18:29625525	A	NA	37	0	34	36.647	6.866	0	0	0	33	0	RNF125	intronic	NA
RCC_T10--6	chr18:29625525	A	NA	35	0	33	36.091	6.807	0	0	0	31	0	RNF125	intronic	NA
RCC_T10--7	chr18:29625525	A	NA	32	0	31	37.129	3.201	0	0	0	31	0	RNF125	intronic	NA
RCC_T10--8	chr18:29625525	A	NA	38	0	35	36.514	7.621	0	0	0	33	0	RNF125	intronic	NA
RCC_T10--GL	chr18:29625525	A	NA	37	0	35	36.943	3.208	0	0	0	34	0	RNF125	intronic	NA
RCC_T10--1	chr18:30351015	A	G	134	0.149	114	31.149	10.029	20	33.700	4.079	83	17	KLHL14	intronic	NA
RCC_T10--2	chr18:30351015	A	G	96	0.219	75	33.920	7.398	21	33.524	6.831	65	16	KLHL14	intronic	NA
RCC_T10--3	chr18:30351015	A	G	139	0.079	127	32.063	9.805	11	30.909	10.163	101	8	KLHL14	intronic	NA
RCC_T10--4	chr18:30351015	A	G	123	0.366	77	32.545	9.465	45	29.000	13.494	64	33	KLHL14	intronic	NA
RCC_T10--5	chr18:30351015	A	G	161	0.230	124	31.145	10.427	37	31.054	10.690	97	28	KLHL14	intronic	NA
RCC_T10--6	chr18:30351015	A	G	142	0.303	99	31.374	10.812	43	32.395	9.637	80	33	KLHL14	intronic	NA
RCC_T10--7	chr18:30351015	A	G	137	0.204	109	31.477	11.409	28	30.643	10.744	84	22	KLHL14	intronic	NA
RCC_T10--8	chr18:30351015	A	G	130	0.223	100	31.390	10.727	29	31.517	9.280	77	21	KLHL14	intronic	NA
RCC_T10--GL	chr18:30351015	A	NA	140	0	136	30.419	9.974	0	0	0	102	0	KLHL14	intronic	NA
RCC_T10--1	chr1:899347	C	T	204	0.083	187	34.011	8.113	17	35.765	4.024	165	15	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--2	chr1:899347	C	T	166	0.241	122	34.320	7.091	40	34.550	6.809	109	35	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--3	chr1:899347	C	T	214	0.056	201	33.761	7.837	12	34.417	7.192	178	10	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--4	chr1:899347	C	T	152	0.211	119	34.387	7.033	32	34.531	5.742	108	28	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--5	chr1:899347	C	NA	206	0	204	34.020	8.485	0	0	0	184	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--6	chr1:899347	C	T	130	0.154	109	33.917	8.109	20	33.050	6.211	97	15	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--7	chr1:899347	C	NA	174	0	172	34.174	7.251	0	0	0	149	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--8	chr1:899347	C	NA	221	0	220	33.555	9.000	0	0	0	193	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--GL	chr1:899347	C	NA	145	0	145	32.069	9.291	0	0	0	116	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T10--1	chr19:14031365	T	C	115	0.104	103	35.417	5.791	12	34.417	10.561	94	11	CC2D1A	intronic	NA
RCC_T10--2	chr19:14031365	T	C	103	0.291	73	35.986	5.722	30	35.733	7.163	67	29	CC2D1A	intronic	NA
RCC_T10--3	chr19:14031365	T	C	133	0.045	127	35.449	7.163	6	36.500	6.656	117	5	CC2D1A	intronic	NA
RCC_T10--4	chr19:14031365	T	C	74	0.324	50	35.980	5.950	24	35.500	7.735	47	23	CC2D1A	intronic	NA
RCC_T10--5	chr19:14031365	T	C	118	0.237	89	34.697	8.957	28	37.036	4.718	80	26	CC2D1A	intronic	NA
RCC_T10--6	chr19:14031365	T	C	118	0.280	85	34.129	9.414	33	35.545	4.078	77	31	CC2D1A	intronic	NA
RCC_T10--7	chr19:14031365	T	C	131	0.153	111	35.604	5.930	20	34.850	8.543	102	18	CC2D1A	intronic	NA
RCC_T10--8	chr19:14031365	T	C	127	0.252	95	35.053	7.408	32	35.531	9.281	86	30	CC2D1A	intronic	NA
RCC_T10--GL	chr19:14031365	T	NA	120	0	119	35.168	5.955	0	0	0	109	0	CC2D1A	intronic	NA
RCC_T10--1	chr19:2046328	C	NA	234	0	234	31.769	9.966	0	0	0	194	0	MKNK2	intronic	NA
RCC_T10--2	chr19:2046328	C	NA	162	0	161	32.814	8.866	0	0	0	136	0	MKNK2	intronic	NA
RCC_T10--3	chr19:2046328	C	NA	262	0	261	32.605	9.032	0	0	0	223	0	MKNK2	intronic	NA
RCC_T10--4	chr19:2046328	C	A	180	0.150	152	33.270	8.923	27	33.778	7.536	134	24	MKNK2	intronic	NA
RCC_T10--5	chr19:2046328	C	A	224	0.232	170	32.476	8.973	52	31.615	8.402	146	42	MKNK2	intronic	NA
RCC_T10--6	chr19:2046328	C	A	187	0.166	156	33.923	7.225	31	33.484	6.999	141	29	MKNK2	intronic	NA
RCC_T10--7	chr19:2046328	C	A	173	0.127	151	31.742	9.916	22	30.909	8.890	129	16	MKNK2	intronic	NA
RCC_T10--8	chr19:2046328	C	A	249	0.249	186	33.586	7.979	62	32.323	8.059	162	54	MKNK2	intronic	NA
RCC_T10--GL	chr19:2046328	C	NA	157	0	157	29.446	11.127	0	0	0	113	0	MKNK2	intronic	NA
RCC_T10--1	chr19:39227128	G	T	43	0.116	37	34.595	8.617	5	34.800	3.194	34	5	CAPN12	intronic	NA
RCC_T10--2	chr19:39227128	G	T	24	0.375	14	31.429	12.482	9	36.444	1.944	10	9	CAPN12	intronic	NA
RCC_T10--3	chr19:39227128	G	T	50	0.020	49	32.306	9.247	1	39.000	0.000	39	1	CAPN12	intronic	NA
RCC_T10--4	chr19:39227128	G	T	21	0.190	16	34.688	4.895	4	37.750	2.500	14	4	CAPN12	intronic	NA
RCC_T10--5	chr19:39227128	G	T	32	0.156	25	36.000	2.723	5	24.000	13.342	25	3	CAPN12	intronic	NA
RCC_T10--6	chr19:39227128	G	T	36	0.333	21	34.905	5.761	12	35.917	2.906	19	12	CAPN12	intronic	NA
RCC_T10--7	chr19:39227128	G	T	29	0.103	25	32.040	11.981	3	34.667	4.041	21	3	CAPN12	intronic	NA
RCC_T10--8	chr19:39227128	G	T	37	0.189	28	35.250	8.195	7	33.000	4.082	26	6	CAPN12	intronic	NA
RCC_T10--GL	chr19:39227128	G	NA	44	0	44	31.955	10.846	0	0	0	34	0	CAPN12	intronic	NA
RCC_T10--1	chr19:4510663	C	NA	84	0	84	33.571	9.141	0	0	0	74	0	PLIN4	exonic	synonymous_SNV
RCC_T10--2	chr19:4510663	C	T	61	0.246	46	30.500	13.004	15	27.933	12.227	36	10	PLIN4	exonic	synonymous_SNV
RCC_T10--3	chr19:4510663	C	NA	82	0	82	33.927	8.223	0	0	0	74	0	PLIN4	exonic	synonymous_SNV
RCC_T10--4	chr19:4510663	C	NA	67	0	67	33.075	9.694	0	0	0	60	0	PLIN4	exonic	synonymous_SNV
RCC_T10--5	chr19:4510663	C	NA	115	0	114	33.114	10.152	0	0	0	98	0	PLIN4	exonic	synonymous_SNV
RCC_T10--6	chr19:4510663	C	NA	72	0	72	31.889	11.487	0	0	0	61	0	PLIN4	exonic	synonymous_SNV
RCC_T10--7	chr19:4510663	C	NA	81	0	80	28.375	13.064	0	0	0	55	0	PLIN4	exonic	synonymous_SNV
RCC_T10--8	chr19:4510663	C	NA	99	0	98	30.663	10.996	0	0	0	79	0	PLIN4	exonic	synonymous_SNV
RCC_T10--GL	chr19:4510663	C	NA	60	0	60	28.950	14.002	0	0	0	48	0	PLIN4	exonic	synonymous_SNV
RCC_T10--1	chr19:50368466	C	T	88	0.091	80	35.825	6.217	8	34.500	13.320	77	7	PNKP	exonic	nonsynonymous_SNV
RCC_T10--2	chr19:50368466	C	T	104	0.346	68	35.529	6.834	36	37.083	6.767	63	35	PNKP	exonic	nonsynonymous_SNV
RCC_T10--3	chr19:50368466	C	T	108	0.065	101	33.871	10.154	7	36.286	2.563	89	7	PNKP	exonic	nonsynonymous_SNV
RCC_T10--4	chr19:50368466	C	T	76	0.276	55	35.564	8.814	21	36.048	5.249	51	20	PNKP	exonic	nonsynonymous_SNV
RCC_T10--5	chr19:50368466	C	T	93	0.323	63	35.317	6.862	30	37.933	2.982	56	30	PNKP	exonic	nonsynonymous_SNV
RCC_T10--6	chr19:50368466	C	T	79	0.316	54	35.778	7.396	25	36.120	3.140	51	25	PNKP	exonic	nonsynonymous_SNV
RCC_T10--7	chr19:50368466	C	T	82	0.098	74	34.622	7.539	8	34.500	13.299	66	7	PNKP	exonic	nonsynonymous_SNV
RCC_T10--8	chr19:50368466	C	T	121	0.248	91	36.220	6.097	30	36.833	4.526	87	28	PNKP	exonic	nonsynonymous_SNV
RCC_T10--GL	chr19:50368466	C	NA	87	0	87	34.207	9.170	0	0	0	75	0	PNKP	exonic	nonsynonymous_SNV
RCC_T10--1	chr19:57175631	G	NA	120	0	119	32.471	8.584	0	0	0	97	0	ZNF835	exonic	synonymous_SNV
RCC_T10--2	chr19:57175631	G	NA	117	0	116	30.940	11.460	0	0	0	88	0	ZNF835	exonic	synonymous_SNV
RCC_T10--3	chr19:57175631	G	NA	128	0	124	33.056	8.656	0	0	0	103	0	ZNF835	exonic	synonymous_SNV
RCC_T10--4	chr19:57175631	G	A	100	0.150	84	30.000	11.412	15	25.333	13.409	63	9	ZNF835	exonic	synonymous_SNV
RCC_T10--5	chr19:57175631	G	A	143	0.322	97	31.866	8.386	46	30.370	10.102	77	33	ZNF835	exonic	synonymous_SNV
RCC_T10--6	chr19:57175631	G	A	100	0.220	77	32.519	9.965	22	32.000	8.701	65	17	ZNF835	exonic	synonymous_SNV
RCC_T10--7	chr19:57175631	G	A	109	0.128	94	30.777	11.087	14	34.714	4.428	73	12	ZNF835	exonic	synonymous_SNV
RCC_T10--8	chr19:57175631	G	NA	132	0	131	32.099	9.508	0	0	0	104	0	ZNF835	exonic	synonymous_SNV
RCC_T10--GL	chr19:57175631	G	NA	88	0	88	30.216	9.983	0	0	0	63	0	ZNF835	exonic	synonymous_SNV
RCC_T10--1	chr19:9488872	C	T	69	0.087	63	38.206	3.764	6	38.667	2.066	61	6	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--2	chr19:9488872	C	T	57	0.298	40	38.425	3.630	17	38.235	3.289	39	17	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--3	chr19:9488872	C	T	65	0.123	57	37.088	8.058	8	39.125	1.126	52	8	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--4	chr19:9488872	C	T	59	0.169	49	38.020	3.870	10	39.200	1.619	47	10	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--5	chr19:9488872	C	NA	39	0	39	37.333	3.579	0	0	0	38	0	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--6	chr19:9488872	C	T	63	0.159	53	37.792	5.946	10	37.600	4.812	51	9	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--7	chr19:9488872	C	NA	50	0	50	38.360	3.312	0	0	0	49	0	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--8	chr19:9488872	C	NA	70	0	69	36.986	8.290	0	0	0	64	0	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--GL	chr19:9488872	C	NA	45	0	45	38.267	3.621	0	0	0	44	0	ZNF177,ZNF559-ZNF177	intronic	NA
RCC_T10--1	chr20:239825	T	NA	221	0	221	34.041	8.049	0	0	0	184	0	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--2	chr20:239825	T	NA	201	0	201	34.338	7.587	0	0	0	174	0	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--3	chr20:239825	T	NA	240	0	240	34.438	8.010	0	0	0	215	0	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--4	chr20:239825	T	C	213	0.113	189	35.386	6.037	24	32.375	12.176	175	21	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--5	chr20:239825	T	C	228	0.263	164	34.372	8.777	60	34.133	6.485	148	51	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--6	chr20:239825	T	C	145	0.193	115	31.930	10.530	28	35.500	3.522	91	26	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--7	chr20:239825	T	C	195	0.174	159	34.296	8.247	34	32.235	7.734	141	28	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--8	chr20:239825	T	C	262	0.057	245	34.829	6.474	15	35.800	3.509	222	15	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--GL	chr20:239825	T	NA	224	0	222	33.284	8.023	0	0	0	179	0	DEFB132	exonic	nonsynonymous_SNV
RCC_T10--1	chr20:30737397	C	NA	121	0	121	35.967	4.993	0	0	0	115	0	TM9SF4	intronic	NA
RCC_T10--2	chr20:30737397	C	NA	105	0	104	35.423	5.867	0	0	0	99	0	TM9SF4	intronic	NA
RCC_T10--3	chr20:30737397	C	NA	149	0	147	34.837	7.802	0	0	0	134	0	TM9SF4	intronic	NA
RCC_T10--4	chr20:30737397	C	T	95	0.084	87	34.874	5.714	8	35.000	2.138	82	8	TM9SF4	intronic	NA
RCC_T10--5	chr20:30737397	C	T	121	0.339	79	35.329	7.132	41	33.805	8.229	73	38	TM9SF4	intronic	NA
RCC_T10--6	chr20:30737397	C	T	85	0.176	70	36.186	5.898	15	33.333	12.965	66	13	TM9SF4	intronic	NA
RCC_T10--7	chr20:30737397	C	T	106	0.179	87	34.770	7.850	19	33.789	8.613	77	17	TM9SF4	intronic	NA
RCC_T10--8	chr20:30737397	C	T	132	0.205	105	33.352	9.603	27	35.370	4.307	91	26	TM9SF4	intronic	NA
RCC_T10--GL	chr20:30737397	C	NA	136	0	135	34.259	8.140	0	0	0	115	0	TM9SF4	intronic	NA
RCC_T10--1	chr20:34575284	G	A	57	0.105	51	38.373	5.734	6	31.833	15.118	50	5	CNBD2	intronic	NA
RCC_T10--2	chr20:34575284	G	A	60	0.283	43	38.163	3.579	17	37.882	3.919	42	16	CNBD2	intronic	NA
RCC_T10--3	chr20:34575284	G	A	59	0.068	54	38.907	2.735	4	38.750	1.500	53	4	CNBD2	intronic	NA
RCC_T10--4	chr20:34575284	G	A	43	0.233	33	36.606	6.759	10	33.900	10.016	29	8	CNBD2	intronic	NA
RCC_T10--5	chr20:34575284	G	A	30	0.133	26	36.654	3.224	4	37.250	2.872	25	4	CNBD2	intronic	NA
RCC_T10--6	chr20:34575284	G	A	28	0.429	16	37.125	3.344	12	34.750	8.379	15	11	CNBD2	intronic	NA
RCC_T10--7	chr20:34575284	G	A	43	0.093	39	36.641	5.779	4	39.750	1.258	37	4	CNBD2	intronic	NA
RCC_T10--8	chr20:34575284	G	A	68	0.250	50	38.480	2.541	17	35.000	9.893	50	15	CNBD2	intronic	NA
RCC_T10--GL	chr20:34575284	G	NA	35	0	35	35.714	8.723	0	0	0	30	0	CNBD2	intronic	NA
RCC_T10--1	chr21:15755471	T	NA	83	0	83	35.000	4.851	0	0	0	80	0	HSPA13	UTR5	NA
RCC_T10--2	chr21:15755471	T	NA	89	0	89	33.663	8.272	0	0	0	72	0	HSPA13	UTR5	NA
RCC_T10--3	chr21:15755471	T	NA	89	0	89	34.000	7.032	0	0	0	80	0	HSPA13	UTR5	NA
RCC_T10--4	chr21:15755471	T	A	80	0.125	70	32.757	9.361	10	32.000	10.583	59	9	HSPA13	UTR5	NA
RCC_T10--5	chr21:15755471	T	A	94	0.362	60	31.917	9.199	34	33.235	6.715	47	28	HSPA13	UTR5	NA
RCC_T10--6	chr21:15755471	T	A	86	0.291	61	32.639	9.096	25	32.800	7.599	51	20	HSPA13	UTR5	NA
RCC_T10--7	chr21:15755471	T	A	97	0.113	83	34.494	6.446	11	29.364	13.574	75	9	HSPA13	UTR5	NA
RCC_T10--8	chr21:15755471	T	A	96	0.167	80	33.450	7.863	16	32.375	12.230	70	14	HSPA13	UTR5	NA
RCC_T10--GL	chr21:15755471	T	NA	109	0	109	27.716	12.571	0	0	0	76	0	HSPA13	UTR5	NA
RCC_T10--1	chr21:38884312	T	C	715	0.091	645	36.812	6.562	65	37.862	5.376	610	64	DYRK1A	exonic	synonymous_SNV
RCC_T10--2	chr21:38884312	T	C	644	0.289	458	37.402	5.431	186	36.919	6.152	436	173	DYRK1A	exonic	synonymous_SNV
RCC_T10--3	chr21:38884312	T	C	745	0.083	682	36.930	6.877	62	36.274	8.284	639	55	DYRK1A	exonic	synonymous_SNV
RCC_T10--4	chr21:38884312	T	C	617	0.331	413	36.460	7.812	204	35.966	7.946	386	187	DYRK1A	exonic	synonymous_SNV
RCC_T10--5	chr21:38884312	T	C	640	0.258	474	36.559	6.486	165	37.430	5.433	443	157	DYRK1A	exonic	synonymous_SNV
RCC_T10--6	chr21:38884312	T	C	510	0.298	355	36.721	7.405	152	37.414	6.029	333	147	DYRK1A	exonic	synonymous_SNV
RCC_T10--7	chr21:38884312	T	C	623	0.146	530	35.949	7.660	91	34.824	10.087	486	81	DYRK1A	exonic	synonymous_SNV
RCC_T10--8	chr21:38884312	T	C	739	0.206	586	36.928	6.563	152	37.342	5.629	551	145	DYRK1A	exonic	synonymous_SNV
RCC_T10--GL	chr21:38884312	T	NA	959	0	956	36.434	6.903	0	0	0	889	0	DYRK1A	exonic	synonymous_SNV
RCC_T10--1	chr2:160801383	T	G	62	0.081	57	37.158	6.267	5	35.000	11.247	52	4	PLA2R1	intronic	NA
RCC_T10--2	chr2:160801383	T	G	74	0.216	57	37.667	7.110	16	39.688	2.182	54	16	PLA2R1	intronic	NA
RCC_T10--3	chr2:160801383	T	G	68	0.088	62	37.016	7.877	6	32.333	14.909	57	5	PLA2R1	intronic	NA
RCC_T10--4	chr2:160801383	T	G	53	0.302	36	38.528	4.494	16	38.500	4.676	35	15	PLA2R1	intronic	NA
RCC_T10--5	chr2:160801383	T	G	50	0.180	41	36.927	6.517	9	34.778	12.488	37	8	PLA2R1	intronic	NA
RCC_T10--6	chr2:160801383	T	G	34	0.324	23	39.217	2.593	11	37.818	3.311	23	11	PLA2R1	intronic	NA
RCC_T10--7	chr2:160801383	T	G	46	0.152	39	35.667	10.466	7	38.000	2.769	35	7	PLA2R1	intronic	NA
RCC_T10--8	chr2:160801383	T	G	64	0.234	49	37.204	8.377	15	38.400	4.171	46	14	PLA2R1	intronic	NA
RCC_T10--GL	chr2:160801383	T	NA	76	0	76	36.447	7.241	0	0	0	67	0	PLA2R1	intronic	NA
RCC_T10--1	chr2:170147482	T	NA	46	0	46	36.739	8.048	0	0	0	44	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--2	chr2:170147482	T	NA	43	0	43	38.093	2.902	0	0	0	43	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--3	chr2:170147482	T	A	49	0.143	42	37.048	3.669	7	37.143	3.338	40	7	LRP2	exonic	nonsynonymous_SNV
RCC_T10--4	chr2:170147482	T	NA	44	0	44	37.205	7.155	0	0	0	41	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--5	chr2:170147482	T	NA	50	0	49	37.082	6.157	0	0	0	46	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--6	chr2:170147482	T	A	37	0.270	27	36.407	5.071	10	34.700	6.767	24	9	LRP2	exonic	nonsynonymous_SNV
RCC_T10--7	chr2:170147482	T	NA	37	0	37	36.892	6.505	0	0	0	36	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--8	chr2:170147482	T	NA	65	0	65	36.615	4.811	0	0	0	58	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr2:170147482	T	NA	60	0	60	37.000	7.145	0	0	0	57	0	LRP2	exonic	nonsynonymous_SNV
RCC_T10--1	chr2:179209405	T	C	15	0.267	11	38.273	3.823	4	33.750	2.500	11	4	OSBPL6	intronic	NA
RCC_T10--2	chr2:179209405	T	C	13	0.077	12	32.583	11.204	1	31.000	0.000	9	1	OSBPL6	intronic	NA
RCC_T10--3	chr2:179209405	T	C	14	0.143	12	38.833	2.209	2	34.000	0.000	12	2	OSBPL6	intronic	NA
RCC_T10--4	chr2:179209405	T	C	22	0.091	20	37.600	4.512	2	30.500	3.536	18	1	OSBPL6	intronic	NA
RCC_T10--5	chr2:179209405	T	C	21	0.143	18	37.889	4.269	3	35.333	1.528	17	3	OSBPL6	intronic	NA
RCC_T10--6	chr2:179209405	T	C	29	0.103	26	37.846	4.240	3	36.333	1.155	24	3	OSBPL6	intronic	NA
RCC_T10--7	chr2:179209405	T	NA	19	0	19	38.105	5.724	0	0	0	17	0	OSBPL6	intronic	NA
RCC_T10--8	chr2:179209405	T	C	20	0.050	19	38.263	3.016	1	34.000	0.000	19	1	OSBPL6	intronic	NA
RCC_T10--GL	chr2:179209405	T	NA	33	0	33	36.667	4.741	0	0	0	32	0	OSBPL6	intronic	NA
RCC_T10--1	chr2:186656713	T	NA	141	0	141	37.943	4.480	0	0	0	139	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--2	chr2:186656713	T	NA	131	0	129	36.488	5.366	0	0	0	124	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--3	chr2:186656713	T	NA	135	0	134	37.231	4.885	0	0	0	126	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--4	chr2:186656713	T	NA	141	0	141	37.518	6.000	0	0	0	135	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--5	chr2:186656713	T	A	143	0.098	127	37.630	5.599	14	37.786	4.209	118	13	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--6	chr2:186656713	T	A	102	0.176	84	37.286	5.196	18	36.944	4.385	82	17	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--7	chr2:186656713	T	A	108	0.157	91	37.626	3.773	17	38.941	2.193	89	17	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--8	chr2:186656713	T	NA	172	0	170	37.353	5.522	0	0	0	161	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr2:186656713	T	NA	205	0	205	37.127	5.640	0	0	0	195	0	FSIP2	exonic	nonsynonymous_SNV
RCC_T10--1	chr2:187521215	G	NA	25	0	25	38.120	4.065	0	0	0	24	0	ITGAV	intronic	NA
RCC_T10--2	chr2:187521215	G	NA	28	0	28	38.071	3.485	0	0	0	28	0	ITGAV	intronic	NA
RCC_T10--3	chr2:187521215	G	NA	19	0	19	38.053	3.822	0	0	0	18	0	ITGAV	intronic	NA
RCC_T10--4	chr2:187521215	G	A	30	0.033	29	38.103	3.144	1	36.000	0.000	28	1	ITGAV	intronic	NA
RCC_T10--5	chr2:187521215	G	A	35	0.114	31	38.774	2.997	4	39.250	2.872	30	4	ITGAV	intronic	NA
RCC_T10--6	chr2:187521215	G	A	28	0.250	21	38.286	2.795	7	37.429	2.878	21	7	ITGAV	intronic	NA
RCC_T10--7	chr2:187521215	G	A	30	0.167	25	35.360	8.426	5	38.000	2.646	22	5	ITGAV	intronic	NA
RCC_T10--8	chr2:187521215	G	NA	35	0	35	38.057	5.514	0	0	0	34	0	ITGAV	intronic	NA
RCC_T10--GL	chr2:187521215	G	NA	40	0	40	38.325	2.939	0	0	0	40	0	ITGAV	intronic	NA
RCC_T10--1	chr22:21380922	T	NA	50	0	50	34.540	8.781	0	0	0	45	0	P2RX6	UTR3	NA
RCC_T10--2	chr22:21380922	T	NA	50	0	50	32.880	9.102	0	0	0	43	0	P2RX6	UTR3	NA
RCC_T10--3	chr22:21380922	T	A	60	0.033	58	34.362	8.337	2	28.000	4.243	51	1	P2RX6	UTR3	NA
RCC_T10--4	chr22:21380922	T	NA	50	0	50	33.960	7.835	0	0	0	44	0	P2RX6	UTR3	NA
RCC_T10--5	chr22:21380922	T	NA	75	0	74	33.500	9.240	0	0	0	66	0	P2RX6	UTR3	NA
RCC_T10--6	chr22:21380922	T	A	56	0.196	43	31.930	10.678	11	36.636	2.873	34	11	P2RX6	UTR3	NA
RCC_T10--7	chr22:21380922	T	NA	43	0	43	35.395	3.743	0	0	0	41	0	P2RX6	UTR3	NA
RCC_T10--8	chr22:21380922	T	NA	63	0	62	34.419	8.011	0	0	0	57	0	P2RX6	UTR3	NA
RCC_T10--GL	chr22:21380922	T	NA	55	0	55	32.455	9.597	0	0	0	44	0	P2RX6	UTR3	NA
RCC_T10--1	chr22:22029390	C	T	24	0.042	23	37.652	2.994	1	35.000	0.000	23	1	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--2	chr22:22029390	C	T	29	0.172	24	36.167	7.872	5	40.000	1.225	23	5	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--3	chr22:22029390	C	T	31	0.097	28	34.929	10.022	3	38.333	2.517	24	3	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--4	chr22:22029390	C	NA	28	0	27	35.815	7.864	0	0	0	24	0	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--5	chr22:22029390	C	NA	38	0	38	37.816	5.109	0	0	0	37	0	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--6	chr22:22029390	C	T	31	0.194	25	34.960	8.096	6	38.833	2.714	22	6	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--7	chr22:22029390	C	NA	32	0	32	36.219	6.899	0	0	0	31	0	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--8	chr22:22029390	C	NA	50	0	50	36.360	6.187	0	0	0	46	0	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--GL	chr22:22029390	C	NA	53	0	53	37.396	4.613	0	0	0	52	0	PPIL2	exonic	nonsynonymous_SNV
RCC_T10--1	chr2:234255571	A	NA	205	0	204	35.358	7.177	0	0	0	184	0	SAG	UTR3	NA
RCC_T10--2	chr2:234255571	A	NA	176	0	176	36.716	4.768	0	0	0	170	0	SAG	UTR3	NA
RCC_T10--3	chr2:234255571	A	NA	225	0	225	34.800	7.826	0	0	0	206	0	SAG	UTR3	NA
RCC_T10--4	chr2:234255571	A	C	197	0.168	161	36.248	5.506	33	35.970	6.812	151	32	SAG	UTR3	NA
RCC_T10--5	chr2:234255571	A	NA	212	0	211	35.308	7.138	0	0	0	195	0	SAG	UTR3	NA
RCC_T10--6	chr2:234255571	A	NA	137	0	137	36.051	6.387	0	0	0	131	0	SAG	UTR3	NA
RCC_T10--7	chr2:234255571	A	NA	156	0	154	35.948	5.845	0	0	0	146	0	SAG	UTR3	NA
RCC_T10--8	chr2:234255571	A	NA	268	0	268	35.407	6.852	0	0	0	250	0	SAG	UTR3	NA
RCC_T10--GL	chr2:234255571	A	NA	251	0	250	35.184	7.143	0	0	0	232	0	SAG	UTR3	NA
RCC_T10--1	chr2:234599404	C	NA	64	0	63	33.524	9.284	0	0	0	55	0	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--2	chr2:234599404	C	NA	57	0	56	34.661	8.337	0	0	0	50	0	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--3	chr2:234599404	C	NA	83	0	83	36.000	4.412	0	0	0	76	0	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--4	chr2:234599404	C	A	67	0.045	62	35.177	7.456	3	38.000	2.646	54	3	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--5	chr2:234599404	C	A	55	0.164	38	36.447	3.493	9	36.889	1.616	37	9	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--6	chr2:234599404	C	A	64	0.109	52	35.019	7.081	7	38.286	2.059	47	7	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--7	chr2:234599404	C	A	43	0.023	39	35.103	9.531	1	34.000	0.000	35	1	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--8	chr2:234599404	C	NA	63	0	62	35.016	7.258	0	0	0	56	0	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--GL	chr2:234599404	C	NA	78	0	78	34.833	7.765	0	0	0	70	0	UGT1A10,UGT1A7,UGT1A8,UGT1A9	intronic	NA
RCC_T10--1	chr22:37332619	G	A	41	0.146	34	37.147	3.295	6	39.167	1.472	34	6	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--2	chr22:37332619	G	A	34	0.471	18	34.222	8.572	16	32.000	12.291	17	13	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--3	chr22:37332619	G	A	46	0.065	43	36.140	5.231	3	37.333	5.508	40	3	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--4	chr22:37332619	G	A	32	0.375	20	35.400	8.666	12	35.167	5.573	18	11	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--5	chr22:37332619	G	A	47	0.277	34	36.971	4.041	13	32.846	10.439	33	11	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--6	chr22:37332619	G	A	19	0.316	13	38.692	3.250	6	37.167	2.858	13	6	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--7	chr22:37332619	G	A	22	0.136	19	34.105	9.831	3	37.333	0.577	17	3	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--8	chr22:37332619	G	A	51	0.373	32	34.031	9.057	19	34.105	5.839	29	17	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--GL	chr22:37332619	G	NA	39	0	39	34.487	7.469	0	0	0	34	0	CSF2RB	exonic	nonsynonymous_SNV
RCC_T10--1	chr2:242644200	C	NA	33	0	33	35.394	7.009	0	0	0	30	0	ING5	intronic	NA
RCC_T10--2	chr2:242644200	C	NA	38	0	38	37.184	3.616	0	0	0	37	0	ING5	intronic	NA
RCC_T10--3	chr2:242644200	C	NA	40	0	40	36.700	3.204	0	0	0	40	0	ING5	intronic	NA
RCC_T10--4	chr2:242644200	C	NA	38	0	38	36.526	4.525	0	0	0	36	0	ING5	intronic	NA
RCC_T10--5	chr2:242644200	C	G	51	0.235	39	35.692	6.771	12	38.917	2.906	36	12	ING5	intronic	NA
RCC_T10--6	chr2:242644200	C	NA	37	0	37	34.649	6.949	0	0	0	31	0	ING5	intronic	NA
RCC_T10--7	chr2:242644200	C	G	42	0.048	40	35.400	4.349	2	36.500	3.536	38	2	ING5	intronic	NA
RCC_T10--8	chr2:242644200	C	NA	44	0	44	37.023	4.112	0	0	0	41	0	ING5	intronic	NA
RCC_T10--GL	chr2:242644200	C	NA	52	0	51	34.922	6.368	0	0	0	44	0	ING5	intronic	NA
RCC_T10--1	chr2:26203621	C	T	133	0.090	120	32.483	10.662	12	34.167	5.096	104	9	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--2	chr2:26203621	C	T	118	0.305	79	35.139	5.247	36	30.833	8.664	70	26	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--3	chr2:26203621	C	T	145	0.055	137	34.066	8.935	8	33.875	13.185	121	7	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--4	chr2:26203621	C	T	109	0.211	86	34.163	7.821	23	32.304	8.276	75	19	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--5	chr2:26203621	C	NA	150	0	149	33.564	9.173	0	0	0	127	0	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--6	chr2:26203621	C	T	114	0.114	101	33.277	9.775	13	35.923	2.532	86	13	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--7	chr2:26203621	C	NA	115	0	115	34.000	7.902	0	0	0	95	0	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--8	chr2:26203621	C	NA	194	0	191	34.094	8.835	0	0	0	164	0	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--GL	chr2:26203621	C	NA	129	0	127	32.504	9.237	0	0	0	101	0	KIF3C	exonic	nonsynonymous_SNV
RCC_T10--1	chr2:80530450	C	NA	106	0	106	33.821	7.784	0	0	0	93	0	LRRTM1	exonic	synonymous_SNV
RCC_T10--2	chr2:80530450	C	NA	84	0	84	31.940	9.896	0	0	0	68	0	LRRTM1	exonic	synonymous_SNV
RCC_T10--3	chr2:80530450	C	NA	108	0	108	33.111	9.114	0	0	0	91	0	LRRTM1	exonic	synonymous_SNV
RCC_T10--4	chr2:80530450	C	A	76	0.171	63	35.048	6.308	13	27.154	12.529	57	7	LRRTM1	exonic	synonymous_SNV
RCC_T10--5	chr2:80530450	C	A	119	0.244	87	34.621	7.199	29	32.897	10.489	80	23	LRRTM1	exonic	synonymous_SNV
RCC_T10--6	chr2:80530450	C	A	81	0.086	74	34.014	7.672	7	30.000	12.884	66	5	LRRTM1	exonic	synonymous_SNV
RCC_T10--7	chr2:80530450	C	A	94	0.138	80	33.050	8.160	13	35.385	3.380	68	12	LRRTM1	exonic	synonymous_SNV
RCC_T10--8	chr2:80530450	C	A	94	0.255	70	31.714	10.163	24	33.458	9.578	57	20	LRRTM1	exonic	synonymous_SNV
RCC_T10--GL	chr2:80530450	C	NA	101	0	101	30.554	11.697	0	0	0	76	0	LRRTM1	exonic	synonymous_SNV
RCC_T10--1	chr3:101574293	A	G	117	0.094	105	37.714	3.390	11	33.273	11.297	101	9	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--2	chr3:101574293	A	G	104	0.308	72	38.083	4.981	32	36.094	6.990	71	30	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--3	chr3:101574293	A	G	108	0.056	100	37.270	5.539	6	37.833	2.927	95	6	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--4	chr3:101574293	A	G	96	0.156	81	37.543	4.129	15	37.933	2.374	78	15	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--5	chr3:101574293	A	NA	111	0	109	37.413	4.304	0	0	0	104	0	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--6	chr3:101574293	A	G	76	0.158	64	37.641	3.345	12	32.083	14.475	63	10	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--7	chr3:101574293	A	NA	82	0	82	37.707	4.898	0	0	0	80	0	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--8	chr3:101574293	A	NA	143	0	143	37.133	5.484	0	0	0	135	0	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--GL	chr3:101574293	A	NA	121	0	121	36.488	6.250	0	0	0	112	0	NFKBIZ	exonic	nonsynonymous_SNV
RCC_T10--1	chr3:119301010	G	NA	108	0	108	37.093	5.149	0	0	0	104	0	ADPRH	UTR5	NA
RCC_T10--2	chr3:119301010	G	NA	94	0	92	37.457	3.778	0	0	0	88	0	ADPRH	UTR5	NA
RCC_T10--3	chr3:119301010	G	NA	117	0	117	36.239	7.600	0	0	0	110	0	ADPRH	UTR5	NA
RCC_T10--4	chr3:119301010	G	C	104	0.144	88	36.932	5.094	15	35.733	5.561	84	13	ADPRH	UTR5	NA
RCC_T10--5	chr3:119301010	G	C	101	0.267	74	37.703	4.984	27	31.222	10.896	73	22	ADPRH	UTR5	NA
RCC_T10--6	chr3:119301010	G	C	100	0.190	79	37.494	4.787	19	35.895	3.871	76	18	ADPRH	UTR5	NA
RCC_T10--7	chr3:119301010	G	C	91	0.110	81	37.333	4.736	10	30.800	15.354	78	8	ADPRH	UTR5	NA
RCC_T10--8	chr3:119301010	G	C	123	0.244	93	37.097	4.613	30	36.900	4.894	90	29	ADPRH	UTR5	NA
RCC_T10--GL	chr3:119301010	G	NA	131	0	131	36.336	4.346	0	0	0	121	0	ADPRH	UTR5	NA
RCC_T10--1	chr3:186456872	C	NA	40	0	40	38.400	2.854	0	0	0	40	0	KNG1	intronic	NA
RCC_T10--2	chr3:186456872	C	NA	29	0	29	38.172	5.568	0	0	0	28	0	KNG1	intronic	NA
RCC_T10--3	chr3:186456872	C	NA	31	0	31	36.806	7.926	0	0	0	29	0	KNG1	intronic	NA
RCC_T10--4	chr3:186456872	C	T	39	0.103	35	37.029	4.979	4	38.500	3.109	34	4	KNG1	intronic	NA
RCC_T10--5	chr3:186456872	C	T	37	0.243	28	38.143	3.285	9	39.111	2.147	28	9	KNG1	intronic	NA
RCC_T10--6	chr3:186456872	C	T	28	0.107	25	37.160	5.055	3	39.333	0.577	23	3	KNG1	intronic	NA
RCC_T10--7	chr3:186456872	C	T	34	0.118	29	37.621	2.993	4	39.750	0.500	29	4	KNG1	intronic	NA
RCC_T10--8	chr3:186456872	C	T	52	0.192	42	36.095	6.510	10	38.300	2.669	40	10	KNG1	intronic	NA
RCC_T10--GL	chr3:186456872	C	NA	83	0	83	37.578	4.727	0	0	0	80	0	KNG1	intronic	NA
RCC_T10--1	chr3:195492041	G	A	110	0.118	97	34.577	7.415	13	34.615	5.331	87	11	MUC4	intronic	NA
RCC_T10--2	chr3:195492041	G	A	94	0.213	74	31.973	11.683	20	31.700	9.905	59	16	MUC4	intronic	NA
RCC_T10--3	chr3:195492041	G	A	98	0.051	93	33.538	10.597	5	26.600	14.223	80	3	MUC4	intronic	NA
RCC_T10--4	chr3:195492041	G	A	70	0.343	46	33.913	8.617	24	33.375	7.906	39	19	MUC4	intronic	NA
RCC_T10--5	chr3:195492041	G	A	98	0.255	72	33.667	9.650	25	35.120	6.058	61	24	MUC4	intronic	NA
RCC_T10--6	chr3:195492041	G	A	88	0.341	58	33.103	10.415	30	31.400	9.099	47	23	MUC4	intronic	NA
RCC_T10--7	chr3:195492041	G	A	77	0.091	70	32.871	10.387	7	37.000	3.512	59	7	MUC4	intronic	NA
RCC_T10--8	chr3:195492041	G	A	102	0.235	78	31.513	11.908	24	29.042	12.167	60	16	MUC4	intronic	NA
RCC_T10--GL	chr3:195492041	G	NA	65	0	65	31.877	10.922	0	0	0	52	0	MUC4	intronic	NA
RCC_T10--1	chr4:110882080	C	G	43	0.116	38	36.947	7.036	5	37.200	5.933	36	4	EGF	exonic	nonsynonymous_SNV
RCC_T10--2	chr4:110882080	C	G	36	0.333	24	37.458	3.489	12	34.667	8.648	23	11	EGF	exonic	nonsynonymous_SNV
RCC_T10--3	chr4:110882080	C	G	42	0.167	35	38.114	2.978	7	34.714	5.024	35	6	EGF	exonic	nonsynonymous_SNV
RCC_T10--4	chr4:110882080	C	G	37	0.324	25	35.640	8.103	12	36.167	3.563	23	11	EGF	exonic	nonsynonymous_SNV
RCC_T10--5	chr4:110882080	C	NA	40	0	40	37.600	3.264	0	0	0	40	0	EGF	exonic	nonsynonymous_SNV
RCC_T10--6	chr4:110882080	C	G	23	0.087	21	36.429	4.976	2	39.000	1.414	20	2	EGF	exonic	nonsynonymous_SNV
RCC_T10--7	chr4:110882080	C	NA	45	0	45	37.356	3.311	0	0	0	44	0	EGF	exonic	nonsynonymous_SNV
RCC_T10--8	chr4:110882080	C	NA	48	0	47	35.404	6.749	0	0	0	41	0	EGF	exonic	nonsynonymous_SNV
RCC_T10--GL	chr4:110882080	C	NA	62	0	62	35.903	7.572	0	0	0	56	0	EGF	exonic	nonsynonymous_SNV
RCC_T10--1	chr4:123855862	C	T	102	0.020	98	36.765	7.432	2	34.000	0.000	91	2	SPATA5	exonic	synonymous_SNV
RCC_T10--2	chr4:123855862	C	T	71	0.225	55	38.327	2.894	16	38.375	2.680	55	16	SPATA5	exonic	synonymous_SNV
RCC_T10--3	chr4:123855862	C	T	105	0.057	99	37.384	5.897	6	38.000	2.000	97	6	SPATA5	exonic	synonymous_SNV
RCC_T10--4	chr4:123855862	C	T	110	0.309	76	36.605	7.786	34	37.706	3.317	71	33	SPATA5	exonic	synonymous_SNV
RCC_T10--5	chr4:123855862	C	T	90	0.211	70	36.671	5.664	19	36.105	7.210	66	17	SPATA5	exonic	synonymous_SNV
RCC_T10--6	chr4:123855862	C	T	55	0.182	45	38.578	2.500	10	36.300	2.359	45	10	SPATA5	exonic	synonymous_SNV
RCC_T10--7	chr4:123855862	C	T	71	0.141	61	37.361	5.975	10	35.600	7.245	58	9	SPATA5	exonic	synonymous_SNV
RCC_T10--8	chr4:123855862	C	T	114	0.272	82	36.024	8.431	31	38.290	2.969	76	31	SPATA5	exonic	synonymous_SNV
RCC_T10--GL	chr4:123855862	C	NA	118	0	118	36.932	6.650	0	0	0	111	0	SPATA5	exonic	synonymous_SNV
RCC_T10--1	chr4:162306862	G	NA	185	0	184	37.565	5.508	0	0	0	173	0	FSTL5	UTR3	NA
RCC_T10--2	chr4:162306862	G	NA	171	0	170	37.924	3.231	0	0	0	167	0	FSTL5	UTR3	NA
RCC_T10--3	chr4:162306862	G	NA	183	0	182	38.033	3.947	0	0	0	176	0	FSTL5	UTR3	NA
RCC_T10--4	chr4:162306862	G	C	210	0.095	190	37.384	5.840	20	35.800	7.076	183	18	FSTL5	UTR3	NA
RCC_T10--5	chr4:162306862	G	C	178	0.253	132	37.152	5.889	45	37.333	4.651	122	43	FSTL5	UTR3	NA
RCC_T10--6	chr4:162306862	G	C	161	0.174	132	37.947	4.507	28	38.107	4.433	129	26	FSTL5	UTR3	NA
RCC_T10--7	chr4:162306862	G	C	168	0.161	141	37.816	3.170	27	37.333	3.293	140	26	FSTL5	UTR3	NA
RCC_T10--8	chr4:162306862	G	C	243	0.235	186	37.833	4.926	57	37.351	6.108	180	55	FSTL5	UTR3	NA
RCC_T10--GL	chr4:162306862	G	NA	249	0	249	37.739	5.492	0	0	0	243	0	FSTL5	UTR3	NA
RCC_T10--1	chr4:185616003	A	G	58	0.121	51	38.647	2.985	7	38.143	2.854	50	7	CENPU,PRIMPOL	UTR3	NA
RCC_T10--2	chr4:185616003	A	G	45	0.178	35	39.114	2.763	8	40.500	1.414	34	8	CENPU,PRIMPOL	UTR3	NA
RCC_T10--3	chr4:185616003	A	G	56	0.107	50	38.460	2.682	6	39.333	1.633	50	6	CENPU,PRIMPOL	UTR3	NA
RCC_T10--4	chr4:185616003	A	G	55	0.327	37	38.432	3.211	18	38.389	2.725	37	18	CENPU,PRIMPOL	UTR3	NA
RCC_T10--5	chr4:185616003	A	NA	42	0	42	35.905	8.296	0	0	0	38	0	CENPU,PRIMPOL	UTR3	NA
RCC_T10--6	chr4:185616003	A	G	44	0.182	36	39.028	2.467	8	38.750	2.550	36	8	CENPU,PRIMPOL	UTR3	NA
RCC_T10--7	chr4:185616003	A	NA	47	0	47	38.319	3.369	0	0	0	45	0	CENPU,PRIMPOL	UTR3	NA
RCC_T10--8	chr4:185616003	A	NA	68	0	68	37.647	6.762	0	0	0	65	0	CENPU,PRIMPOL	UTR3	NA
RCC_T10--GL	chr4:185616003	A	NA	77	0	77	37.857	5.070	0	0	0	74	0	CENPU,PRIMPOL	UTR3	NA
RCC_T10--1	chr4:186284715	G	NA	48	0	48	36.938	7.985	0	0	0	45	0	SNX25	UTR3	NA
RCC_T10--2	chr4:186284715	G	NA	48	0	48	36.375	5.793	0	0	0	45	0	SNX25	UTR3	NA
RCC_T10--3	chr4:186284715	G	NA	59	0	59	36.254	5.836	0	0	0	53	0	SNX25	UTR3	NA
RCC_T10--4	chr4:186284715	G	NA	53	0	52	38.404	3.108	0	0	0	51	0	SNX25	UTR3	NA
RCC_T10--5	chr4:186284715	G	NA	79	0	79	36.684	6.275	0	0	0	72	0	SNX25	UTR3	NA
RCC_T10--6	chr4:186284715	G	NA	58	0	57	37.053	5.598	0	0	0	55	0	SNX25	UTR3	NA
RCC_T10--7	chr4:186284715	G	NA	44	0	44	34.273	9.679	0	0	0	38	0	SNX25	UTR3	NA
RCC_T10--8	chr4:186284715	G	T	67	0.224	52	36.154	5.184	15	36.933	3.918	48	14	SNX25	UTR3	NA
RCC_T10--GL	chr4:186284715	G	NA	73	0	72	36.000	7.271	0	0	0	66	0	SNX25	UTR3	NA
RCC_T10--1	chr4:26483231	C	NA	76	0	76	35.526	7.162	0	0	0	70	0	CCKAR	UTR3	NA
RCC_T10--2	chr4:26483231	C	T	56	0.321	38	37.895	2.739	18	35.889	8.937	38	17	CCKAR	UTR3	NA
RCC_T10--3	chr4:26483231	C	NA	86	0	86	36.419	4.426	0	0	0	82	0	CCKAR	UTR3	NA
RCC_T10--4	chr4:26483231	C	NA	61	0	60	36.767	6.187	0	0	0	56	0	CCKAR	UTR3	NA
RCC_T10--5	chr4:26483231	C	NA	64	0	63	37.206	5.870	0	0	0	59	0	CCKAR	UTR3	NA
RCC_T10--6	chr4:26483231	C	NA	61	0	60	37.517	3.657	0	0	0	59	0	CCKAR	UTR3	NA
RCC_T10--7	chr4:26483231	C	NA	79	0	79	36.051	5.315	0	0	0	74	0	CCKAR	UTR3	NA
RCC_T10--8	chr4:26483231	C	NA	81	0	81	36.667	5.790	0	0	0	75	0	CCKAR	UTR3	NA
RCC_T10--GL	chr4:26483231	C	NA	61	0	61	36.426	6.474	0	0	0	56	0	CCKAR	UTR3	NA
RCC_T10--1	chr4:47556801	G	NA	146	0	146	37.623	4.416	0	0	0	142	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--2	chr4:47556801	G	NA	155	0	155	36.316	5.615	0	0	0	145	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--3	chr4:47556801	G	NA	164	0	163	37.387	5.741	0	0	0	159	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--4	chr4:47556801	G	A	193	0.238	147	36.401	7.148	46	35.435	9.932	138	42	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--5	chr4:47556801	G	NA	179	0	179	37.134	5.104	0	0	0	174	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--6	chr4:47556801	G	NA	119	0	118	37.975	4.640	0	0	0	115	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--7	chr4:47556801	G	NA	142	0	141	37.092	6.146	0	0	0	136	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--8	chr4:47556801	G	NA	203	0	201	37.085	6.055	0	0	0	193	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--GL	chr4:47556801	G	NA	257	0	257	36.786	6.495	0	0	0	246	0	ATP10D	exonic	nonsynonymous_SNV
RCC_T10--1	chr4:55589882	G	C	56	0.018	55	38.564	2.679	1	39.000	0.000	55	1	KIT	intronic	NA
RCC_T10--2	chr4:55589882	G	C	53	0.245	40	35.175	6.808	13	34.846	10.415	38	11	KIT	intronic	NA
RCC_T10--3	chr4:55589882	G	C	49	0.122	43	37.093	5.084	6	34.167	6.080	41	4	KIT	intronic	NA
RCC_T10--4	chr4:55589882	G	C	40	0.375	25	36.040	8.483	15	34.000	9.539	21	13	KIT	intronic	NA
RCC_T10--5	chr4:55589882	G	C	50	0.220	39	36.590	7.232	11	37.545	2.911	37	11	KIT	intronic	NA
RCC_T10--6	chr4:55589882	G	C	29	0.138	25	36.480	7.933	4	33.750	5.188	24	4	KIT	intronic	NA
RCC_T10--7	chr4:55589882	G	C	39	0.154	33	36.606	5.250	6	32.333	15.095	31	5	KIT	intronic	NA
RCC_T10--8	chr4:55589882	G	C	68	0.279	49	38.306	3.441	19	35.474	8.707	48	18	KIT	intronic	NA
RCC_T10--GL	chr4:55589882	G	NA	71	0	71	36.268	6.141	0	0	0	65	0	KIT	intronic	NA
RCC_T10--1	chr4:57797255	C	NA	51	0	51	35.078	8.027	0	0	0	44	0	REST	exonic	nonsynonymous_SNV
RCC_T10--2	chr4:57797255	C	NA	60	0	59	35.576	7.813	0	0	0	52	0	REST	exonic	nonsynonymous_SNV
RCC_T10--3	chr4:57797255	C	NA	67	0	66	34.712	10.482	0	0	0	58	0	REST	exonic	nonsynonymous_SNV
RCC_T10--4	chr4:57797255	C	T	62	0.194	50	37.340	4.667	12	33.333	11.531	48	10	REST	exonic	nonsynonymous_SNV
RCC_T10--5	chr4:57797255	C	NA	66	0	65	36.554	5.844	0	0	0	61	0	REST	exonic	nonsynonymous_SNV
RCC_T10--6	chr4:57797255	C	NA	55	0	55	36.782	7.052	0	0	0	53	0	REST	exonic	nonsynonymous_SNV
RCC_T10--7	chr4:57797255	C	NA	49	0	49	35.306	8.928	0	0	0	43	0	REST	exonic	nonsynonymous_SNV
RCC_T10--8	chr4:57797255	C	NA	80	0	80	33.862	9.769	0	0	0	68	0	REST	exonic	nonsynonymous_SNV
RCC_T10--GL	chr4:57797255	C	NA	66	0	66	37.061	4.530	0	0	0	60	0	REST	exonic	nonsynonymous_SNV
RCC_T10--1	chr4:57843259	G	NA	91	0	91	34.110	7.573	0	0	0	80	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--2	chr4:57843259	G	NA	87	0	86	35.360	5.183	0	0	0	80	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--3	chr4:57843259	G	NA	116	0	116	33.690	7.578	0	0	0	103	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--4	chr4:57843259	G	A	100	0.200	80	33.913	6.616	20	32.250	8.213	71	16	NOA1	exonic	nonsynonymous_SNV
RCC_T10--5	chr4:57843259	G	NA	94	0	94	34.670	6.860	0	0	0	83	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--6	chr4:57843259	G	NA	88	0	88	34.886	6.408	0	0	0	80	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--7	chr4:57843259	G	NA	73	0	73	33.822	6.812	0	0	0	63	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--8	chr4:57843259	G	NA	114	0	114	32.921	7.954	0	0	0	93	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--GL	chr4:57843259	G	NA	94	0	94	31.489	8.587	0	0	0	73	0	NOA1	exonic	nonsynonymous_SNV
RCC_T10--1	chr4:6279102	C	NA	73	0	72	35.708	6.816	0	0	0	69	0	WFS1	intronic	NA
RCC_T10--2	chr4:6279102	C	NA	48	0	48	35.792	6.116	0	0	0	45	0	WFS1	intronic	NA
RCC_T10--3	chr4:6279102	C	NA	62	0	62	35.113	8.381	0	0	0	55	0	WFS1	intronic	NA
RCC_T10--4	chr4:6279102	C	NA	54	0	54	35.426	8.048	0	0	0	48	0	WFS1	intronic	NA
RCC_T10--5	chr4:6279102	C	NA	72	0	71	34.634	8.063	0	0	0	65	0	WFS1	intronic	NA
RCC_T10--6	chr4:6279102	C	T	38	0.211	30	35.667	7.092	8	31.625	12.917	28	6	WFS1	intronic	NA
RCC_T10--7	chr4:6279102	C	NA	35	0	35	36.400	6.865	0	0	0	33	0	WFS1	intronic	NA
RCC_T10--8	chr4:6279102	C	NA	56	0	56	35.946	6.684	0	0	0	52	0	WFS1	intronic	NA
RCC_T10--GL	chr4:6279102	C	NA	60	0	60	32.000	10.452	0	0	0	50	0	WFS1	intronic	NA
RCC_T10--1	chr4:84376839	T	NA	376	0	375	34.811	7.135	0	0	0	343	0	HELQ	exonic	nonsynonymous_SNV
RCC_T10--2	chr4:84376839	T	NA	377	0	374	34.091	8.291	0	0	0	336	0	HELQ	exonic	nonsynonymous_SNV
RCC_T10--3	chr4:84376839	T	NA	407	0	405	34.412	8.278	0	0	0	362	0	HELQ	exonic	nonsynonymous_SNV
RCC_T10--4	chr4:84376839	T	G	354	0.138	304	34.615	6.932	49	34.653	7.105	268	43	HELQ	exonic	nonsynonymous_SNV
RCC_T10--5	chr4:84376839	T	G	462	0.242	344	33.392	9.379	112	33.259	9.818	301	94	HELQ	exonic	nonsynonymous_SNV
RCC_T10--6	chr4:84376839	T	G	327	0.165	272	34.176	8.410	54	33.963	9.960	239	48	HELQ	exonic	nonsynonymous_SNV
RCC_T10--7	chr4:84376839	T	G	370	0.154	312	33.949	8.397	57	33.737	8.334	274	50	HELQ	exonic	nonsynonymous_SNV
RCC_T10--8	chr4:84376839	T	G	455	0.002	454	33.813	8.310	1	41.000	0.000	393	1	HELQ	exonic	nonsynonymous_SNV
RCC_T10--GL	chr4:84376839	T	NA	404	0	401	31.930	9.572	0	0	0	313	0	HELQ	exonic	nonsynonymous_SNV
RCC_T10--1	chr5:109049453	G	A	246	0.065	230	33.513	11.890	16	32.562	15.293	194	13	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--2	chr5:109049453	G	A	291	0.227	225	32.600	12.714	66	36.864	8.410	181	61	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--3	chr5:109049453	G	A	282	0.057	263	34.285	10.837	16	30.250	14.304	227	13	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--4	chr5:109049453	G	A	274	0.197	220	33.255	12.209	54	35.444	10.682	183	48	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--5	chr5:109049453	G	A	307	0.205	243	33.370	11.885	63	33.095	12.598	207	52	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--6	chr5:109049453	G	A	216	0.227	164	33.415	11.677	49	33.408	12.952	139	41	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--7	chr5:109049453	G	A	183	0.126	160	33.087	12.185	23	36.174	8.310	134	21	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--8	chr5:109049453	G	A	328	0.168	273	34.121	10.903	55	36.927	7.979	236	51	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--GL	chr5:109049453	G	NA	300	0	300	35.627	8.191	0	0	0	272	0	MAN2A1	exonic	nonsynonymous_SNV
RCC_T10--1	chr5:130825234	C	G	238	0.071	220	37.159	6.172	17	32.588	11.790	211	15	RAPGEF6	intronic	NA
RCC_T10--2	chr5:130825234	C	G	248	0.226	190	37.868	4.714	56	36.107	6.877	183	52	RAPGEF6	intronic	NA
RCC_T10--3	chr5:130825234	C	G	225	0.071	207	36.870	6.638	16	37.500	2.852	196	16	RAPGEF6	intronic	NA
RCC_T10--4	chr5:130825234	C	G	291	0.247	219	37.580	4.639	72	36.819	7.016	214	67	RAPGEF6	intronic	NA
RCC_T10--5	chr5:130825234	C	G	299	0.191	238	37.286	6.069	57	38.298	2.872	229	57	RAPGEF6	intronic	NA
RCC_T10--6	chr5:130825234	C	G	245	0.233	188	37.452	5.931	57	38.053	5.420	181	56	RAPGEF6	intronic	NA
RCC_T10--7	chr5:130825234	C	G	210	0.090	189	37.614	4.359	19	37.000	9.006	184	18	RAPGEF6	intronic	NA
RCC_T10--8	chr5:130825234	C	G	346	0.182	282	36.918	5.576	63	37.127	6.025	266	58	RAPGEF6	intronic	NA
RCC_T10--GL	chr5:130825234	C	NA	338	0	335	37.570	4.249	0	0	0	330	0	RAPGEF6	intronic	NA
RCC_T10--1	chr5:141041728	C	NA	141	0	139	35.158	4.566	0	0	0	127	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--2	chr5:141041728	C	A	156	0.205	123	33.642	8.505	32	34.875	9.072	106	30	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--3	chr5:141041728	C	NA	180	0	178	34.180	8.285	0	0	0	157	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--4	chr5:141041728	C	NA	160	0	159	32.956	9.886	0	0	0	140	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--5	chr5:141041728	C	NA	197	0	194	34.082	7.231	0	0	0	172	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--6	chr5:141041728	C	NA	162	0	161	33.752	8.298	0	0	0	143	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--7	chr5:141041728	C	NA	145	0	144	32.868	10.250	0	0	0	126	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--8	chr5:141041728	C	NA	207	0	205	32.590	9.602	0	0	0	169	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr5:141041728	C	NA	135	0	135	29.978	11.754	0	0	0	103	0	ARAP3	exonic	nonsynonymous_SNV
RCC_T10--1	chr5:161324489	C	NA	86	0	86	38.593	3.160	0	0	0	85	0	GABRA1	UTR3	NA
RCC_T10--2	chr5:161324489	C	NA	101	0	99	37.869	6.267	0	0	0	95	0	GABRA1	UTR3	NA
RCC_T10--3	chr5:161324489	C	NA	114	0	114	38.412	4.774	0	0	0	112	0	GABRA1	UTR3	NA
RCC_T10--4	chr5:161324489	C	T	125	0.064	117	37.530	6.120	8	38.125	2.416	112	8	GABRA1	UTR3	NA
RCC_T10--5	chr5:161324489	C	T	131	0.206	104	38.260	4.879	27	36.370	4.592	101	24	GABRA1	UTR3	NA
RCC_T10--6	chr5:161324489	C	T	110	0.136	95	37.179	6.585	15	38.933	2.344	88	15	GABRA1	UTR3	NA
RCC_T10--7	chr5:161324489	C	T	110	0.164	91	38.099	4.069	18	38.944	2.461	87	18	GABRA1	UTR3	NA
RCC_T10--8	chr5:161324489	C	NA	164	0	164	37.750	5.908	0	0	0	159	0	GABRA1	UTR3	NA
RCC_T10--GL	chr5:161324489	C	NA	123	0	123	36.894	7.513	0	0	0	114	0	GABRA1	UTR3	NA
RCC_T10--1	chr5:167854959	C	T	36	0.111	32	37.469	3.959	4	35.000	3.916	31	4	WWC1	intronic	NA
RCC_T10--2	chr5:167854959	C	T	40	0.275	29	38.448	2.886	11	33.818	10.944	29	10	WWC1	intronic	NA
RCC_T10--3	chr5:167854959	C	T	36	0.056	34	36.853	7.067	2	41.000	0.000	33	2	WWC1	intronic	NA
RCC_T10--4	chr5:167854959	C	T	41	0.244	31	36.710	5.178	10	37.100	2.132	30	10	WWC1	intronic	NA
RCC_T10--5	chr5:167854959	C	NA	31	0	31	38.097	3.400	0	0	0	31	0	WWC1	intronic	NA
RCC_T10--6	chr5:167854959	C	T	34	0.088	30	38.233	2.873	3	29.667	11.060	30	2	WWC1	intronic	NA
RCC_T10--7	chr5:167854959	C	NA	30	0	30	36.200	4.156	0	0	0	27	0	WWC1	intronic	NA
RCC_T10--8	chr5:167854959	C	NA	33	0	33	37.576	3.491	0	0	0	33	0	WWC1	intronic	NA
RCC_T10--GL	chr5:167854959	C	NA	42	0	42	35.786	6.741	0	0	0	39	0	WWC1	intronic	NA
RCC_T10--1	chr5:176861915	C	NA	96	0	96	35.500	6.420	0	0	0	87	0	GRK6	exonic	synonymous_SNV
RCC_T10--2	chr5:176861915	C	NA	79	0	78	37.385	3.576	0	0	0	76	0	GRK6	exonic	synonymous_SNV
RCC_T10--3	chr5:176861915	C	NA	100	0	98	35.765	6.892	0	0	0	90	0	GRK6	exonic	synonymous_SNV
RCC_T10--4	chr5:176861915	C	T	96	0.146	82	35.390	6.946	14	35.929	10.080	75	13	GRK6	exonic	synonymous_SNV
RCC_T10--5	chr5:176861915	C	NA	95	0	95	35.347	8.145	0	0	0	86	0	GRK6	exonic	synonymous_SNV
RCC_T10--6	chr5:176861915	C	NA	77	0	76	33.829	10.649	0	0	0	63	0	GRK6	exonic	synonymous_SNV
RCC_T10--7	chr5:176861915	C	NA	65	0	65	35.123	8.833	0	0	0	58	0	GRK6	exonic	synonymous_SNV
RCC_T10--8	chr5:176861915	C	NA	91	0	90	35.489	7.320	0	0	0	84	0	GRK6	exonic	synonymous_SNV
RCC_T10--GL	chr5:176861915	C	NA	54	0	53	32.755	10.606	0	0	0	43	0	GRK6	exonic	synonymous_SNV
RCC_T10--1	chr5:34686977	G	NA	143	0	142	38.768	2.787	0	0	0	141	0	RAI14	UTR5	NA
RCC_T10--2	chr5:34686977	G	NA	118	0	117	37.410	6.280	0	0	0	113	0	RAI14	UTR5	NA
RCC_T10--3	chr5:34686977	G	NA	112	0	112	38.062	4.485	0	0	0	110	0	RAI14	UTR5	NA
RCC_T10--4	chr5:34686977	G	T	104	0.173	85	38.188	4.757	18	35.056	9.013	84	16	RAI14	UTR5	NA
RCC_T10--5	chr5:34686977	G	NA	157	0	157	36.707	6.372	0	0	0	146	0	RAI14	UTR5	NA
RCC_T10--6	chr5:34686977	G	NA	91	0	90	38.344	4.609	0	0	0	89	0	RAI14	UTR5	NA
RCC_T10--7	chr5:34686977	G	NA	101	0	101	37.475	5.268	0	0	0	98	0	RAI14	UTR5	NA
RCC_T10--8	chr5:34686977	G	NA	150	0	149	35.570	8.757	0	0	0	136	0	RAI14	UTR5	NA
RCC_T10--GL	chr5:34686977	G	NA	169	0	169	36.929	6.015	0	0	0	159	0	RAI14	UTR5	NA
RCC_T10--1	chr5:66084296	G	T	67	0.104	59	36.525	5.039	7	34.000	5.196	56	5	MAST4	intronic	NA
RCC_T10--2	chr5:66084296	G	T	51	0.176	42	34.810	7.219	9	35.556	3.712	36	8	MAST4	intronic	NA
RCC_T10--3	chr5:66084296	G	T	68	0.044	65	36.046	6.751	3	36.333	6.429	60	2	MAST4	intronic	NA
RCC_T10--4	chr5:66084296	G	T	42	0.238	32	37.281	5.037	10	34.600	7.662	31	9	MAST4	intronic	NA
RCC_T10--5	chr5:66084296	G	T	56	0.214	44	38.364	3.840	12	35.833	3.512	43	12	MAST4	intronic	NA
RCC_T10--6	chr5:66084296	G	T	50	0.280	36	35.417	7.228	14	35.571	3.275	34	13	MAST4	intronic	NA
RCC_T10--7	chr5:66084296	G	T	49	0.143	42	34.714	8.871	7	35.429	3.690	36	7	MAST4	intronic	NA
RCC_T10--8	chr5:66084296	G	T	80	0.225	62	35.710	6.454	18	30.278	11.276	57	12	MAST4	intronic	NA
RCC_T10--GL	chr5:66084296	G	NA	63	0	63	35.556	6.708	0	0	0	58	0	MAST4	intronic	NA
RCC_T10--1	chr5:95011504	C	T	32	0.094	29	29.897	15.596	3	27.333	21.962	21	2	SPATA9	intronic	NA
RCC_T10--2	chr5:95011504	C	T	26	0.231	20	22.950	18.025	6	32.833	15.316	11	5	SPATA9	intronic	NA
RCC_T10--3	chr5:95011504	C	T	19	0.105	17	27.529	17.285	2	21.500	27.577	12	1	SPATA9	intronic	NA
RCC_T10--4	chr5:95011504	C	T	41	0.268	30	26.467	17.681	11	23.727	17.670	20	6	SPATA9	intronic	NA
RCC_T10--5	chr5:95011504	C	NA	39	0	39	26.949	16.599	0	0	0	24	0	SPATA9	intronic	NA
RCC_T10--6	chr5:95011504	C	NA	41	0	39	21.564	18.595	0	0	0	20	0	SPATA9	intronic	NA
RCC_T10--7	chr5:95011504	C	NA	31	0	31	29.226	14.843	0	0	0	22	0	SPATA9	intronic	NA
RCC_T10--8	chr5:95011504	C	NA	47	0	47	30.894	13.732	0	0	0	37	0	SPATA9	intronic	NA
RCC_T10--GL	chr5:95011504	C	NA	36	0	36	32.361	11.895	0	0	0	26	0	SPATA9	intronic	NA
RCC_T10--1	chr6:111621385	A	T	39	0.154	24	37.250	7.925	6	33.500	1.225	23	6	REV3L	intronic	NA
RCC_T10--2	chr6:111621385	A	T	24	0.042	22	38.273	3.298	1	35.000	0.000	21	1	REV3L	intronic	NA
RCC_T10--3	chr6:111621385	A	T	31	0.097	22	38.773	2.707	3	27.667	8.505	22	2	REV3L	intronic	NA
RCC_T10--4	chr6:111621385	A	T	57	0.053	36	38.250	3.228	3	25.667	9.504	35	1	REV3L	intronic	NA
RCC_T10--5	chr6:111621385	A	T	45	0.067	35	38.143	3.599	3	20.667	16.921	33	1	REV3L	intronic	NA
RCC_T10--6	chr6:111621385	A	T	37	0.135	23	39.000	2.256	5	33.200	2.049	23	5	REV3L	intronic	NA
RCC_T10--7	chr6:111621385	A	T	45	0.067	32	37.406	5.558	3	22.000	17.321	30	2	REV3L	intronic	NA
RCC_T10--8	chr6:111621385	A	T	59	0.051	41	37.756	3.639	3	24.333	19.399	39	2	REV3L	intronic	NA
RCC_T10--GL	chr6:111621385	A	NA	70	0	57	37.842	3.702	0	0	0	55	0	REV3L	intronic	NA
RCC_T10--1	chr6:144183094	G	NA	27	0	27	35.444	7.546	0	0	0	24	0	LTV1	intronic	NA
RCC_T10--2	chr6:144183094	G	NA	28	0	28	37.357	2.870	0	0	0	28	0	LTV1	intronic	NA
RCC_T10--3	chr6:144183094	G	NA	40	0	40	36.200	6.910	0	0	0	35	0	LTV1	intronic	NA
RCC_T10--4	chr6:144183094	G	A	37	0.189	30	35.833	7.634	7	37.857	3.761	28	7	LTV1	intronic	NA
RCC_T10--5	chr6:144183094	G	A	40	0.025	39	35.410	7.225	1	41.000	0.000	34	1	LTV1	intronic	NA
RCC_T10--6	chr6:144183094	G	NA	25	0	25	37.480	3.959	0	0	0	24	0	LTV1	intronic	NA
RCC_T10--7	chr6:144183094	G	NA	28	0	27	37.222	3.130	0	0	0	26	0	LTV1	intronic	NA
RCC_T10--8	chr6:144183094	G	NA	45	0	45	36.067	5.250	0	0	0	40	0	LTV1	intronic	NA
RCC_T10--GL	chr6:144183094	G	NA	41	0	41	37.293	3.235	0	0	0	40	0	LTV1	intronic	NA
RCC_T10--1	chr6:159657223	A	NA	36	0	36	36.833	6.648	0	0	0	34	0	FNDC1	intronic	NA
RCC_T10--2	chr6:159657223	A	NA	36	0	36	36.444	3.902	0	0	0	35	0	FNDC1	intronic	NA
RCC_T10--3	chr6:159657223	A	NA	47	0	47	38.021	3.359	0	0	0	46	0	FNDC1	intronic	NA
RCC_T10--4	chr6:159657223	A	G	35	0.171	28	33.821	8.424	6	34.833	6.616	23	4	FNDC1	intronic	NA
RCC_T10--5	chr6:159657223	A	NA	53	0	52	36.538	4.513	0	0	0	49	0	FNDC1	intronic	NA
RCC_T10--6	chr6:159657223	A	NA	35	0	35	36.514	8.959	0	0	0	33	0	FNDC1	intronic	NA
RCC_T10--7	chr6:159657223	A	NA	24	0	24	35.625	5.046	0	0	0	20	0	FNDC1	intronic	NA
RCC_T10--8	chr6:159657223	A	NA	64	0	62	36.871	6.061	0	0	0	59	0	FNDC1	intronic	NA
RCC_T10--GL	chr6:159657223	A	NA	51	0	51	36.137	5.828	0	0	0	50	0	FNDC1	intronic	NA
RCC_T10--1	chr6:170871004	G	A	68	0.206	54	34.185	9.754	14	32.714	8.642	46	10	TBP	exonic	synonymous_SNV
RCC_T10--2	chr6:170871004	G	A	71	0.113	63	35.333	8.072	8	30.625	9.870	57	6	TBP	exonic	synonymous_SNV
RCC_T10--3	chr6:170871004	G	A	81	0.062	76	33.368	9.981	5	28.400	12.857	63	3	TBP	exonic	synonymous_SNV
RCC_T10--4	chr6:170871004	G	A	35	0.114	31	34.065	8.548	4	33.250	8.884	27	3	TBP	exonic	synonymous_SNV
RCC_T10--5	chr6:170871004	G	A	83	0.108	74	33.351	10.545	9	27.222	13.507	62	6	TBP	exonic	synonymous_SNV
RCC_T10--6	chr6:170871004	G	A	62	0.081	57	34.632	7.160	5	34.400	4.930	48	4	TBP	exonic	synonymous_SNV
RCC_T10--7	chr6:170871004	G	A	66	0.045	63	33.683	9.573	3	35.333	2.887	54	3	TBP	exonic	synonymous_SNV
RCC_T10--8	chr6:170871004	G	A	83	0.108	74	33.095	10.366	9	24.556	16.164	60	5	TBP	exonic	synonymous_SNV
RCC_T10--GL	chr6:170871004	G	NA	42	0	41	33.951	8.933	0	0	0	35	0	TBP	exonic	synonymous_SNV
RCC_T10--1	chr6:34834934	G	T	65	0.138	56	37.411	7.575	9	40.000	1.118	53	9	UHRF1BP1	intronic	NA
RCC_T10--2	chr6:34834934	G	T	52	0.269	38	39.184	2.749	14	39.071	2.702	38	14	UHRF1BP1	intronic	NA
RCC_T10--3	chr6:34834934	G	T	63	0.063	58	38.121	5.771	4	39.250	3.500	55	4	UHRF1BP1	intronic	NA
RCC_T10--4	chr6:34834934	G	T	66	0.227	51	37.863	4.143	15	39.800	2.042	48	15	UHRF1BP1	intronic	NA
RCC_T10--5	chr6:34834934	G	NA	74	0	74	37.405	7.186	0	0	0	68	0	UHRF1BP1	intronic	NA
RCC_T10--6	chr6:34834934	G	T	56	0.089	51	38.275	5.115	5	38.800	2.490	50	5	UHRF1BP1	intronic	NA
RCC_T10--7	chr6:34834934	G	NA	57	0	57	37.526	8.763	0	0	0	54	0	UHRF1BP1	intronic	NA
RCC_T10--8	chr6:34834934	G	NA	93	0	93	37.581	6.739	0	0	0	88	0	UHRF1BP1	intronic	NA
RCC_T10--GL	chr6:34834934	G	NA	77	0	77	38.325	4.333	0	0	0	75	0	UHRF1BP1	intronic	NA
RCC_T10--1	chr6:36181827	A	G	230	0.087	209	36.866	7.358	20	38.250	3.226	199	20	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--2	chr6:36181827	A	G	199	0.281	142	37.394	4.908	56	38.071	5.400	132	55	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--3	chr6:36181827	A	G	231	0.091	209	37.708	4.330	21	36.190	8.159	200	20	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--4	chr6:36181827	A	G	190	0.279	135	36.800	6.324	53	37.075	6.223	130	49	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--5	chr6:36181827	A	G	228	0.259	169	37.391	6.249	59	37.525	3.602	164	58	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--6	chr6:36181827	A	G	171	0.310	118	36.424	7.777	53	36.868	6.528	112	50	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--7	chr6:36181827	A	G	198	0.212	155	36.490	7.084	42	35.905	7.108	146	40	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--8	chr6:36181827	A	G	255	0.259	188	37.548	5.112	66	36.833	4.744	180	59	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--GL	chr6:36181827	A	NA	274	0	274	35.226	8.147	0	0	0	244	0	BRPF3	exonic	nonsynonymous_SNV
RCC_T10--1	chr6:70854210	G	C	37	0.027	18	37.667	4.087	1	34.000	0.000	16	1	COL19A1	intronic	NA
RCC_T10--2	chr6:70854210	G	C	43	0.116	22	38.182	3.875	5	34.000	1.732	21	5	COL19A1	intronic	NA
RCC_T10--3	chr6:70854210	G	NA	51	0	31	38.065	6.952	0	0	0	30	0	COL19A1	intronic	NA
RCC_T10--4	chr6:70854210	G	C	49	0.020	31	37.097	7.476	1	34.000	0.000	29	1	COL19A1	intronic	NA
RCC_T10--5	chr6:70854210	G	NA	45	0	27	38.704	3.811	0	0	0	26	0	COL19A1	intronic	NA
RCC_T10--6	chr6:70854210	G	NA	35	0	24	38.792	3.695	0	0	0	23	0	COL19A1	intronic	NA
RCC_T10--7	chr6:70854210	G	NA	49	0	31	36.871	8.925	0	0	0	29	0	COL19A1	intronic	NA
RCC_T10--8	chr6:70854210	G	NA	58	0	35	36.800	7.677	0	0	0	31	0	COL19A1	intronic	NA
RCC_T10--GL	chr6:70854210	G	NA	54	0	41	38.098	5.770	0	0	0	40	0	COL19A1	intronic	NA
RCC_T10--1	chr7:105658235	A	NA	176	0	175	37.400	5.135	0	0	0	163	0	CDHR3	intronic	NA
RCC_T10--2	chr7:105658235	A	NA	115	0	115	35.939	8.660	0	0	0	106	0	CDHR3	intronic	NA
RCC_T10--3	chr7:105658235	A	NA	146	0	146	36.199	8.318	0	0	0	133	0	CDHR3	intronic	NA
RCC_T10--4	chr7:105658235	A	C	163	0.123	143	35.538	8.049	20	37.950	3.154	128	20	CDHR3	intronic	NA
RCC_T10--5	chr7:105658235	A	C	230	0.170	191	35.686	7.255	39	38.051	3.568	171	38	CDHR3	intronic	NA
RCC_T10--6	chr7:105658235	A	C	146	0.103	130	37.369	5.645	15	39.333	2.526	124	15	CDHR3	intronic	NA
RCC_T10--7	chr7:105658235	A	C	167	0.036	161	35.658	7.777	6	36.000	7.668	147	5	CDHR3	intronic	NA
RCC_T10--8	chr7:105658235	A	C	174	0.241	132	35.030	9.016	42	36.810	6.349	110	40	CDHR3	intronic	NA
RCC_T10--GL	chr7:105658235	A	NA	158	0	157	35.255	8.066	0	0	0	137	0	CDHR3	intronic	NA
RCC_T10--1	chr7:107739103	T	A	62	0.113	54	37.389	4.150	7	33.143	7.515	50	6	LAMB4	intronic	NA
RCC_T10--2	chr7:107739103	T	A	51	0.275	37	37.514	6.640	14	36.643	5.799	35	13	LAMB4	intronic	NA
RCC_T10--3	chr7:107739103	T	A	67	0.075	62	37.274	7.027	5	38.600	1.517	58	5	LAMB4	intronic	NA
RCC_T10--4	chr7:107739103	T	A	78	0.385	47	37.213	5.520	30	35.267	7.656	44	27	LAMB4	intronic	NA
RCC_T10--5	chr7:107739103	T	A	114	0.474	60	36.517	4.196	54	36.722	3.718	57	52	LAMB4	intronic	NA
RCC_T10--6	chr7:107739103	T	A	91	0.516	43	36.233	7.358	47	38.170	2.854	39	46	LAMB4	intronic	NA
RCC_T10--7	chr7:107739103	T	A	84	0.417	49	37.265	6.900	35	36.286	5.437	45	33	LAMB4	intronic	NA
RCC_T10--8	chr7:107739103	T	A	83	0.229	63	36.571	6.962	19	34.211	8.911	59	16	LAMB4	intronic	NA
RCC_T10--GL	chr7:107739103	T	NA	73	0	73	37.068	5.026	0	0	0	67	0	LAMB4	intronic	NA
RCC_T10--1	chr7:142242236	C	NA	119	0	119	36.109	7.334	0	0	0	113	0	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--2	chr7:142242236	C	NA	113	0	113	38.018	3.076	0	0	0	112	0	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--3	chr7:142242236	C	NA	137	0	136	36.478	6.434	0	0	0	126	0	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--4	chr7:142242236	C	A	140	0.064	131	36.863	6.542	9	35.444	4.003	124	8	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--5	chr7:142242236	C	A	206	0.160	173	36.220	6.275	33	36.939	4.802	158	31	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--6	chr7:142242236	C	A	149	0.128	129	37.178	4.468	19	38.105	2.514	125	19	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--7	chr7:142242236	C	A	139	0.108	123	36.577	6.535	15	37.333	3.436	113	15	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--8	chr7:142242236	C	A	112	0.214	88	35.341	8.691	24	36.417	5.413	82	22	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--GL	chr7:142242236	C	NA	191	0	191	36.068	7.279	0	0	0	179	0	TRY2P(dist=270168),MTRNR2L6(dist=131895)	intergenic	NA
RCC_T10--1	chr7:142471798	C	A	99	0.081	91	35.758	8.275	8	37.125	4.051	85	7	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--2	chr7:142471798	C	A	96	0.219	74	36.730	5.645	21	34.333	8.651	71	18	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--3	chr7:142471798	C	A	126	0.056	119	36.630	6.319	7	38.000	3.266	113	7	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--4	chr7:142471798	C	A	149	0.262	109	35.936	6.187	39	36.795	3.435	99	38	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--5	chr7:142471798	C	A	198	0.384	122	36.721	5.059	76	36.711	6.993	115	71	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--6	chr7:142471798	C	A	129	0.357	82	35.622	8.858	46	36.609	6.598	75	44	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--7	chr7:142471798	C	A	113	0.310	78	35.397	7.253	35	36.057	9.264	71	32	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--8	chr7:142471798	C	A	132	0.189	106	35.849	7.067	25	35.960	7.640	95	24	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--GL	chr7:142471798	C	NA	92	0	91	35.242	8.195	0	0	0	85	0	PRSS1(dist=10871),PRSS3P2(dist=6959)	intergenic	NA
RCC_T10--1	chr7:151136952	C	NA	263	0	262	33.760	7.382	0	0	0	233	0	CRYGN	intronic	NA
RCC_T10--2	chr7:151136952	C	NA	231	0	230	34.117	6.374	0	0	0	205	0	CRYGN	intronic	NA
RCC_T10--3	chr7:151136952	C	NA	287	0	287	32.742	9.252	0	0	0	248	0	CRYGN	intronic	NA
RCC_T10--4	chr7:151136952	C	A	308	0.244	232	32.534	9.276	75	34.160	6.109	195	65	CRYGN	intronic	NA
RCC_T10--5	chr7:151136952	C	A	455	0.600	181	32.414	9.491	273	33.571	7.553	152	241	CRYGN	intronic	NA
RCC_T10--6	chr7:151136952	C	A	322	0.394	194	34.103	6.543	127	34.323	6.866	173	115	CRYGN	intronic	NA
RCC_T10--7	chr7:151136952	C	A	272	0.320	180	33.067	8.081	87	34.839	6.153	156	80	CRYGN	intronic	NA
RCC_T10--8	chr7:151136952	C	A	318	0.173	261	31.969	9.728	55	34.055	8.166	222	52	CRYGN	intronic	NA
RCC_T10--GL	chr7:151136952	C	NA	272	0	271	31.395	9.537	0	0	0	219	0	CRYGN	intronic	NA
RCC_T10--1	chr7:24727141	G	NA	97	0	96	36.677	6.302	0	0	0	88	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--2	chr7:24727141	G	C	82	0.293	57	38.368	3.115	24	38.083	3.189	56	23	MPP6	exonic	nonsynonymous_SNV
RCC_T10--3	chr7:24727141	G	NA	109	0	108	36.546	5.531	0	0	0	99	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--4	chr7:24727141	G	NA	117	0	117	37.581	5.647	0	0	0	113	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--5	chr7:24727141	G	NA	176	0	176	35.977	8.491	0	0	0	161	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--6	chr7:24727141	G	NA	108	0	106	37.396	6.081	0	0	0	98	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--7	chr7:24727141	G	NA	107	0	107	37.963	3.576	0	0	0	103	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--8	chr7:24727141	G	NA	118	0	118	37.814	4.358	0	0	0	117	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--GL	chr7:24727141	G	NA	128	0	128	36.789	6.496	0	0	0	121	0	MPP6	exonic	nonsynonymous_SNV
RCC_T10--1	chr7:38284817	C	NA	79	0	79	35.759	8.573	0	0	0	72	0	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--2	chr7:38284817	C	NA	71	0	71	36.380	6.941	0	0	0	67	0	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--3	chr7:38284817	C	NA	98	0	98	36.194	7.768	0	0	0	92	0	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--4	chr7:38284817	C	G	75	0.187	61	36.295	6.168	14	28.857	16.047	57	10	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--5	chr7:38284817	C	G	93	0.419	53	34.340	8.766	39	33.821	10.102	44	33	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--6	chr7:38284817	C	G	81	0.259	60	37.017	5.130	21	37.762	2.931	55	21	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--7	chr7:38284817	C	G	68	0.324	46	35.261	8.245	22	37.000	5.090	41	21	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--8	chr7:38284817	C	NA	98	0	97	37.031	5.423	0	0	0	91	0	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--GL	chr7:38284817	C	NA	118	0	118	35.915	6.069	0	0	0	110	0	STARD3NL(dist=14545),TARP(dist=14427)	intergenic	NA
RCC_T10--1	chr8:11295926	T	C	97	0.134	83	37.819	3.325	13	35.154	10.723	79	11	C8orf12	ncRNA_intronic	NA
RCC_T10--2	chr8:11295926	T	C	83	0.325	56	37.732	5.594	27	36.667	4.540	55	25	C8orf12	ncRNA_intronic	NA
RCC_T10--3	chr8:11295926	T	C	87	0.115	77	37.286	5.958	10	33.300	11.392	74	9	C8orf12	ncRNA_intronic	NA
RCC_T10--4	chr8:11295926	T	C	90	0.278	65	36.215	6.965	25	37.240	4.333	59	23	C8orf12	ncRNA_intronic	NA
RCC_T10--5	chr8:11295926	T	C	118	0.229	91	37.319	5.092	27	38.815	2.254	88	27	C8orf12	ncRNA_intronic	NA
RCC_T10--6	chr8:11295926	T	C	88	0.398	53	36.566	6.646	35	37.057	7.025	49	32	C8orf12	ncRNA_intronic	NA
RCC_T10--7	chr8:11295926	T	C	96	0.094	85	36.153	7.031	9	32.111	12.404	77	7	C8orf12	ncRNA_intronic	NA
RCC_T10--8	chr8:11295926	T	C	111	0.288	79	37.772	3.445	32	36.188	5.492	76	29	C8orf12	ncRNA_intronic	NA
RCC_T10--GL	chr8:11295926	T	NA	120	0	120	37.158	4.986	0	0	0	114	0	C8orf12	ncRNA_intronic	NA
RCC_T10--1	chr8:37697199	A	G	28	0.214	22	35.455	8.787	6	37.833	4.708	19	6	GPR124	intronic	NA
RCC_T10--2	chr8:37697199	A	G	37	0.324	25	36.480	3.917	12	35.500	9.269	25	11	GPR124	intronic	NA
RCC_T10--3	chr8:37697199	A	G	51	0.098	46	36.761	4.352	5	35.400	8.735	43	4	GPR124	intronic	NA
RCC_T10--4	chr8:37697199	A	G	31	0.323	21	37.286	4.002	10	36.900	2.885	20	10	GPR124	intronic	NA
RCC_T10--5	chr8:37697199	A	NA	46	0	46	37.630	2.816	0	0	0	46	0	GPR124	intronic	NA
RCC_T10--6	chr8:37697199	A	G	40	0.050	38	35.921	7.015	2	40.500	0.707	34	2	GPR124	intronic	NA
RCC_T10--7	chr8:37697199	A	NA	22	0	22	34.636	8.364	0	0	0	19	0	GPR124	intronic	NA
RCC_T10--8	chr8:37697199	A	NA	31	0	31	35.097	9.891	0	0	0	28	0	GPR124	intronic	NA
RCC_T10--GL	chr8:37697199	A	NA	41	0	41	36.585	4.588	0	0	0	37	0	GPR124	intronic	NA
RCC_T10--1	chr8:87444048	A	NA	97	0	97	37.753	5.196	0	0	0	94	0	WWP1	intronic	NA
RCC_T10--2	chr8:87444048	A	G	87	0.322	59	38.220	3.801	28	38.393	4.315	57	27	WWP1	intronic	NA
RCC_T10--3	chr8:87444048	A	NA	100	0	100	37.480	4.906	0	0	0	95	0	WWP1	intronic	NA
RCC_T10--4	chr8:87444048	A	NA	107	0	107	37.467	5.817	0	0	0	101	0	WWP1	intronic	NA
RCC_T10--5	chr8:87444048	A	NA	91	0	91	38.747	3.641	0	0	0	89	0	WWP1	intronic	NA
RCC_T10--6	chr8:87444048	A	NA	100	0	100	38.070	4.298	0	0	0	96	0	WWP1	intronic	NA
RCC_T10--7	chr8:87444048	A	NA	69	0	69	38.232	3.828	0	0	0	66	0	WWP1	intronic	NA
RCC_T10--8	chr8:87444048	A	NA	115	0	115	38.243	3.833	0	0	0	110	0	WWP1	intronic	NA
RCC_T10--GL	chr8:87444048	A	NA	131	0	131	36.427	6.847	0	0	0	123	0	WWP1	intronic	NA
RCC_T10--1	chr9:114456427	A	G	11	0.091	10	39.500	2.068	1	35.000	0.000	10	1	C9orf84	intronic	NA
RCC_T10--2	chr9:114456427	A	G	17	0.235	13	37.231	3.632	4	28.250	6.397	12	2	C9orf84	intronic	NA
RCC_T10--3	chr9:114456427	A	G	22	0.091	20	37.050	3.300	2	35.000	0.000	20	2	C9orf84	intronic	NA
RCC_T10--4	chr9:114456427	A	G	16	0.312	11	37.909	4.134	5	35.000	0.000	11	5	C9orf84	intronic	NA
RCC_T10--5	chr9:114456427	A	G	31	0.226	24	34.333	8.489	7	33.143	3.078	20	6	C9orf84	intronic	NA
RCC_T10--6	chr9:114456427	A	G	24	0.458	13	35.846	4.488	11	33.091	6.074	11	10	C9orf84	intronic	NA
RCC_T10--7	chr9:114456427	A	G	16	0.188	13	35.231	9.248	3	36.000	1.732	12	3	C9orf84	intronic	NA
RCC_T10--8	chr9:114456427	A	G	21	0.190	17	38.118	3.140	4	32.250	4.272	17	3	C9orf84	intronic	NA
RCC_T10--GL	chr9:114456427	A	NA	39	0	39	36.462	5.739	0	0	0	36	0	C9orf84	intronic	NA
RCC_T10--1	chr9:127730710	A	NA	58	0	57	35.386	5.381	0	0	0	52	0	SCAI	intronic	NA
RCC_T10--2	chr9:127730710	A	NA	39	0	39	36.385	7.308	0	0	0	36	0	SCAI	intronic	NA
RCC_T10--3	chr9:127730710	A	T	55	0.055	51	36.980	3.942	3	32.000	5.568	49	2	SCAI	intronic	NA
RCC_T10--4	chr9:127730710	A	NA	49	0	49	36.612	3.752	0	0	0	47	0	SCAI	intronic	NA
RCC_T10--5	chr9:127730710	A	NA	41	0	41	36.341	7.108	0	0	0	39	0	SCAI	intronic	NA
RCC_T10--6	chr9:127730710	A	T	35	0.229	27	37.037	4.570	8	32.750	10.899	25	7	SCAI	intronic	NA
RCC_T10--7	chr9:127730710	A	NA	35	0	35	37.457	3.459	0	0	0	35	0	SCAI	intronic	NA
RCC_T10--8	chr9:127730710	A	NA	77	0	76	36.263	5.983	0	0	0	70	0	SCAI	intronic	NA
RCC_T10--GL	chr9:127730710	A	NA	59	0	59	35.966	7.189	0	0	0	54	0	SCAI	intronic	NA
RCC_T10--1	chr9:136584250	C	T	35	0.086	32	32.156	10.562	3	34.000	1.000	27	3	SARDH	intronic	NA
RCC_T10--2	chr9:136584250	C	T	51	0.275	36	31.417	9.755	14	32.429	9.196	30	13	SARDH	intronic	NA
RCC_T10--3	chr9:136584250	C	T	56	0.071	52	31.500	10.840	4	37.750	2.500	43	4	SARDH	intronic	NA
RCC_T10--4	chr9:136584250	C	T	38	0.447	21	33.619	4.663	17	35.294	3.754	16	16	SARDH	intronic	NA
RCC_T10--5	chr9:136584250	C	T	34	0.324	23	30.957	9.641	11	35.000	3.606	17	10	SARDH	intronic	NA
RCC_T10--6	chr9:136584250	C	T	38	0.211	30	32.633	8.096	8	35.500	3.665	25	7	SARDH	intronic	NA
RCC_T10--7	chr9:136584250	C	T	33	0.152	28	33.214	8.293	5	20.400	16.832	24	3	SARDH	intronic	NA
RCC_T10--8	chr9:136584250	C	T	45	0.222	35	34.257	5.135	10	36.000	2.625	30	10	SARDH	intronic	NA
RCC_T10--GL	chr9:136584250	C	NA	47	0	47	32.617	6.027	0	0	0	37	0	SARDH	intronic	NA
RCC_T10--1	chrX:140994362	G	C	21	0.048	20	31.000	12.243	1	41.000	0.000	16	1	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--2	chrX:140994362	G	C	23	0.435	13	33.462	10.791	10	36.000	5.375	11	9	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--3	chrX:140994362	G	C	27	0.111	24	32.792	12.427	3	38.333	3.055	20	3	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--4	chrX:140994362	G	C	34	0.529	16	35.938	4.404	18	36.222	3.843	15	17	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--5	chrX:140994362	G	NA	33	0	33	37.515	3.114	0	0	0	33	0	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--6	chrX:140994362	G	C	44	0.432	25	33.720	10.290	19	33.526	10.803	22	17	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--7	chrX:140994362	G	NA	20	0	20	32.600	8.702	0	0	0	16	0	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--8	chrX:140994362	G	NA	35	0	35	35.971	8.939	0	0	0	33	0	MAGEC1	exonic	nonsynonymous_SNV
RCC_T10--GL	chrX:140994362	G	NA	44	0	44	36.136	6.736	0	0	0	41	0	MAGEC1	exonic	nonsynonymous_SNV
RCC_T1--1	chr10:115412717	T	NA	41	0	41	38.951	1.532	0	0	0	41	0	NRAP	exonic	stopgain_SNV
RCC_T1--2	chr10:115412717	T	NA	130	0	129	35.620	9.284	0	0	0	115	0	NRAP	exonic	stopgain_SNV
RCC_T1--3	chr10:115412717	T	NA	46	0	46	36.109	7.370	0	0	0	41	0	NRAP	exonic	stopgain_SNV
RCC_T1--4	chr10:115412717	T	A	79	0.190	63	36.460	8.449	15	34.533	8.863	57	13	NRAP	exonic	stopgain_SNV
RCC_T1--5	chr10:115412717	T	NA	99	0	99	36.859	7.505	0	0	0	90	0	NRAP	exonic	stopgain_SNV
RCC_T1--6	chr10:115412717	T	NA	108	0	107	33.542	9.787	0	0	0	90	0	NRAP	exonic	stopgain_SNV
RCC_T1--7	chr10:115412717	T	NA	76	0	76	34.750	10.331	0	0	0	65	0	NRAP	exonic	stopgain_SNV
RCC_T1--GL	chr10:115412717	T	NA	97	0	97	35.423	8.887	0	0	0	85	0	NRAP	exonic	stopgain_SNV
RCC_T1--1	chr10:17272875	G	NA	10	0	10	36.900	4.701	0	0	0	8	0	VIM	intronic	NA
RCC_T1--2	chr10:17272875	G	NA	33	0	31	33.677	11.374	0	0	0	24	0	VIM	intronic	NA
RCC_T1--3	chr10:17272875	G	NA	20	0	20	36.250	8.765	0	0	0	18	0	VIM	intronic	NA
RCC_T1--4	chr10:17272875	G	NA	29	0	28	35.321	9.424	0	0	0	24	0	VIM	intronic	NA
RCC_T1--5	chr10:17272875	G	NA	52	0	48	33.958	10.112	0	0	0	37	0	VIM	intronic	NA
RCC_T1--6	chr10:17272875	G	NA	36	0	34	28.853	13.957	0	0	0	22	0	VIM	intronic	NA
RCC_T1--7	chr10:17272875	G	C	27	0.296	18	29.389	15.069	8	38.625	2.774	12	8	VIM	intronic	NA
RCC_T1--GL	chr10:17272875	G	NA	41	0	39	34.487	8.559	0	0	0	31	0	VIM	intronic	NA
RCC_T1--1	chr10:27326806	C	NA	36	0	36	39.806	0.577	0	0	0	36	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--2	chr10:27326806	C	NA	142	0	141	38.142	6.311	0	0	0	133	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--3	chr10:27326806	C	NA	50	0	50	38.180	4.894	0	0	0	46	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--4	chr10:27326806	C	NA	50	0	50	38.380	5.213	0	0	0	47	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--5	chr10:27326806	C	NA	81	0	81	38.025	6.836	0	0	0	77	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--6	chr10:27326806	C	NA	79	0	79	37.152	7.015	0	0	0	72	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--7	chr10:27326806	C	G	84	0.226	64	38.391	4.624	19	38.526	2.435	59	19	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--GL	chr10:27326806	C	NA	72	0	72	37.889	6.933	0	0	0	68	0	ANKRD26	exonic	nonsynonymous_SNV
RCC_T1--1	chr10:33469010	C	T	110	0.055	104	39.058	2.103	6	38.667	2.805	102	6	NRP1	exonic	synonymous_SNV
RCC_T1--2	chr10:33469010	C	T	302	0.202	240	36.663	8.389	61	36.295	7.399	221	55	NRP1	exonic	synonymous_SNV
RCC_T1--3	chr10:33469010	C	T	131	0.168	108	38.741	3.204	22	38.773	3.380	102	21	NRP1	exonic	synonymous_SNV
RCC_T1--4	chr10:33469010	C	T	187	0.283	134	37.119	7.450	53	36.736	7.759	125	48	NRP1	exonic	synonymous_SNV
RCC_T1--5	chr10:33469010	C	T	232	0.177	191	38.126	5.376	41	36.683	5.854	180	34	NRP1	exonic	synonymous_SNV
RCC_T1--6	chr10:33469010	C	T	264	0.053	250	35.076	9.379	14	31.643	13.229	217	10	NRP1	exonic	synonymous_SNV
RCC_T1--7	chr10:33469010	C	T	142	0.296	100	38.480	4.554	42	38.190	5.948	96	41	NRP1	exonic	synonymous_SNV
RCC_T1--GL	chr10:33469010	C	NA	269	0	268	36.198	8.531	0	0	0	247	0	NRP1	exonic	synonymous_SNV
RCC_T1--1	chr10:73206137	G	NA	10	0	10	38.300	2.869	0	0	0	10	0	CDH23	exonic	stopgain_SNV
RCC_T1--2	chr10:73206137	G	NA	49	0	49	34.143	11.325	0	0	0	41	0	CDH23	exonic	stopgain_SNV
RCC_T1--3	chr10:73206137	G	NA	29	0	29	33.276	11.735	0	0	0	23	0	CDH23	exonic	stopgain_SNV
RCC_T1--4	chr10:73206137	G	NA	33	0	33	33.667	11.070	0	0	0	29	0	CDH23	exonic	stopgain_SNV
RCC_T1--5	chr10:73206137	G	NA	43	0	42	35.500	8.749	0	0	0	38	0	CDH23	exonic	stopgain_SNV
RCC_T1--6	chr10:73206137	G	T	46	0.022	45	27.356	15.214	1	36.000	0.000	29	1	CDH23	exonic	stopgain_SNV
RCC_T1--7	chr10:73206137	G	T	38	0.263	28	36.071	7.930	10	29.100	14.925	26	7	CDH23	exonic	stopgain_SNV
RCC_T1--GL	chr10:73206137	G	NA	39	0	39	34.846	9.247	0	0	0	34	0	CDH23	exonic	stopgain_SNV
RCC_T1--1	chr10:96066311	A	T	77	0.091	69	38.087	3.180	7	39.286	1.496	68	7	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--2	chr10:96066311	A	T	197	0.188	158	36.165	6.441	37	35.351	6.973	143	32	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--3	chr10:96066311	A	T	95	0.295	66	36.879	6.198	28	34.464	8.909	61	23	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--4	chr10:96066311	A	T	148	0.304	102	35.216	8.046	45	36.644	4.730	89	44	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--5	chr10:96066311	A	T	152	0.243	113	36.726	4.807	37	34.432	9.332	105	31	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--6	chr10:96066311	A	T	187	0.112	166	32.729	10.171	21	30.952	11.952	131	15	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--7	chr10:96066311	A	T	136	0.265	100	35.430	9.162	36	35.222	7.545	90	31	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr10:96066311	A	NA	207	0	205	35.102	8.119	0	0	0	187	0	PLCE1	exonic	nonsynonymous_SNV
RCC_T1--1	chr10:97817926	G	A	38	0.105	34	39.206	1.388	4	40.000	0.000	34	4	CCNJ	exonic	synonymous_SNV
RCC_T1--2	chr10:97817926	G	A	154	0.273	112	36.777	7.455	42	35.024	11.353	104	37	CCNJ	exonic	synonymous_SNV
RCC_T1--3	chr10:97817926	G	A	75	0.240	57	37.561	6.921	18	39.111	2.193	55	18	CCNJ	exonic	synonymous_SNV
RCC_T1--4	chr10:97817926	G	A	109	0.156	92	38.109	4.542	17	37.824	3.828	90	15	CCNJ	exonic	synonymous_SNV
RCC_T1--5	chr10:97817926	G	A	117	0.188	95	38.200	5.768	22	37.000	8.281	92	20	CCNJ	exonic	synonymous_SNV
RCC_T1--6	chr10:97817926	G	A	147	0.129	128	36.508	6.118	19	33.632	10.226	115	15	CCNJ	exonic	synonymous_SNV
RCC_T1--7	chr10:97817926	G	A	102	0.324	69	37.478	6.036	33	38.848	2.575	64	33	CCNJ	exonic	synonymous_SNV
RCC_T1--GL	chr10:97817926	G	NA	113	0	113	37.133	6.817	0	0	0	108	0	CCNJ	exonic	synonymous_SNV
RCC_T1--1	chr10:99327667	C	NA	26	0	26	37.500	7.752	0	0	0	24	0	UBTD1	intronic	NA
RCC_T1--2	chr10:99327667	C	NA	43	0	43	36.628	5.104	0	0	0	39	0	UBTD1	intronic	NA
RCC_T1--3	chr10:99327667	C	NA	27	0	27	36.667	7.555	0	0	0	25	0	UBTD1	intronic	NA
RCC_T1--4	chr10:99327667	C	NA	29	0	29	37.690	4.521	0	0	0	26	0	UBTD1	intronic	NA
RCC_T1--5	chr10:99327667	C	NA	28	0	28	38.786	2.846	0	0	0	27	0	UBTD1	intronic	NA
RCC_T1--6	chr10:99327667	C	NA	34	0	34	32.382	11.817	0	0	0	28	0	UBTD1	intronic	NA
RCC_T1--7	chr10:99327667	C	G	33	0.242	25	39.080	1.778	8	32.625	13.016	25	6	UBTD1	intronic	NA
RCC_T1--GL	chr10:99327667	C	NA	36	0	36	35.917	9.293	0	0	0	33	0	UBTD1	intronic	NA
RCC_T1--1	chr11:1102427	C	NA	17	0	17	36.706	9.157	0	0	0	16	0	MUC2	intronic	NA
RCC_T1--2	chr11:1102427	C	NA	32	0	32	32.281	12.470	0	0	0	26	0	MUC2	intronic	NA
RCC_T1--3	chr11:1102427	C	NA	13	0	13	35.154	10.115	0	0	0	12	0	MUC2	intronic	NA
RCC_T1--4	chr11:1102427	C	NA	26	0	26	35.538	5.595	0	0	0	22	0	MUC2	intronic	NA
RCC_T1--5	chr11:1102427	C	G	22	0.227	17	29.824	12.391	5	37.800	2.864	10	5	MUC2	intronic	NA
RCC_T1--6	chr11:1102427	C	NA	36	0	36	29.528	13.901	0	0	0	26	0	MUC2	intronic	NA
RCC_T1--7	chr11:1102427	C	NA	25	0	25	33.080	11.210	0	0	0	21	0	MUC2	intronic	NA
RCC_T1--GL	chr11:1102427	C	NA	36	0	36	35.417	9.720	0	0	0	31	0	MUC2	intronic	NA
RCC_T1--1	chr1:111391130	G	A	28	0.071	26	38.731	2.631	2	37.000	2.828	25	2	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--2	chr1:111391130	G	A	76	0.184	62	37.500	5.858	14	39.571	0.646	59	14	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--3	chr1:111391130	G	A	43	0.233	33	36.970	7.852	10	34.100	11.618	29	9	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--4	chr1:111391130	G	NA	67	0	67	37.866	6.363	0	0	0	63	0	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--5	chr1:111391130	G	A	63	0.286	45	37.800	6.854	18	38.722	3.250	42	17	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--6	chr1:111391130	G	A	94	0.064	88	35.670	8.432	6	38.000	3.162	78	6	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--7	chr1:111391130	G	A	74	0.311	51	38.333	5.505	23	39.043	1.894	49	23	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--GL	chr1:111391130	G	NA	67	0	67	37.045	5.599	0	0	0	63	0	KCNA3(dist=173475),CD53(dist=22691)	intergenic	NA
RCC_T1--1	chr1:114963974	A	T	20	0.100	11	38.000	2.530	2	40.000	0.000	11	2	TRIM33	intronic	NA
RCC_T1--2	chr1:114963974	A	T	66	0.045	41	38.512	2.551	3	36.667	4.933	40	3	TRIM33	intronic	NA
RCC_T1--3	chr1:114963974	A	NA	31	0	15	39.133	2.232	0	0	0	15	0	TRIM33	intronic	NA
RCC_T1--4	chr1:114963974	A	T	30	0.100	12	37.333	4.185	3	39.667	0.577	11	3	TRIM33	intronic	NA
RCC_T1--5	chr1:114963974	A	T	39	0.026	19	39.105	1.286	1	40.000	0.000	19	1	TRIM33	intronic	NA
RCC_T1--6	chr1:114963974	A	T	71	0.056	45	32.711	12.855	4	30.250	18.839	37	3	TRIM33	intronic	NA
RCC_T1--7	chr1:114963974	A	T	35	0.229	16	38.875	2.306	8	29.750	12.256	16	6	TRIM33	intronic	NA
RCC_T1--GL	chr1:114963974	A	NA	58	0	36	36.806	8.684	0	0	0	34	0	TRIM33	intronic	NA
RCC_T1--1	chr1:115118221	C	T	34	0.088	31	39.290	2.239	3	40.000	0.000	30	3	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--2	chr1:115118221	C	T	122	0.303	85	38.459	4.757	37	38.324	6.250	82	36	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--3	chr1:115118221	C	T	46	0.217	36	37.306	7.479	10	37.900	3.665	33	10	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--4	chr1:115118221	C	T	73	0.397	44	38.773	3.627	29	35.931	9.754	42	26	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--5	chr1:115118221	C	T	81	0.185	66	38.758	3.539	15	39.267	0.884	64	15	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--6	chr1:115118221	C	T	117	0.051	111	35.342	7.862	6	37.000	2.098	95	6	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--7	chr1:115118221	C	T	74	0.284	53	37.830	6.762	21	37.095	8.502	49	19	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr1:115118221	C	NA	120	0	120	37.567	5.856	0	0	0	114	0	BCAS2	exonic	nonsynonymous_SNV
RCC_T1--1	chr1:119988074	G	C	26	0.038	25	39.200	1.291	1	40.000	0.000	25	1	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--2	chr1:119988074	G	C	66	0.273	48	36.854	7.992	18	35.667	8.931	43	16	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--3	chr1:119988074	G	C	66	0.227	51	38.843	2.603	15	36.867	9.738	49	14	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--4	chr1:119988074	G	NA	93	0	93	37.731	7.247	0	0	0	89	0	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--5	chr1:119988074	G	C	79	0.367	50	38.380	4.435	29	37.690	7.127	48	28	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--6	chr1:119988074	G	C	91	0.055	86	35.593	7.307	5	39.000	1.000	79	5	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--7	chr1:119988074	G	C	80	0.350	52	38.269	2.871	28	39.429	1.399	51	28	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--GL	chr1:119988074	G	NA	79	0	78	36.179	7.241	0	0	0	70	0	HSD3B2(dist=22412),HSD3B1(dist=61752)	intergenic	NA
RCC_T1--1	chr11:35231528	G	NA	38	0	38	39.184	1.270	0	0	0	38	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--2	chr11:35231528	G	NA	175	0	175	37.109	6.996	0	0	0	163	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--3	chr11:35231528	G	NA	84	0	84	38.750	3.495	0	0	0	83	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--4	chr11:35231528	G	NA	118	0	118	36.975	8.083	0	0	0	106	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--5	chr11:35231528	G	NA	117	0	117	38.496	4.877	0	0	0	112	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--6	chr11:35231528	G	NA	193	0	193	34.751	10.058	0	0	0	166	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--7	chr11:35231528	G	C	134	0.194	107	38.439	3.629	26	37.923	4.749	104	24	CD44	exonic	nonsynonymous_SNV
RCC_T1--GL	chr11:35231528	G	NA	166	0	166	37.404	5.822	0	0	0	155	0	CD44	exonic	nonsynonymous_SNV
RCC_T1--1	chr1:146728114	A	NA	26	0	26	38.885	2.372	0	0	0	26	0	CHD1L	intronic	NA
RCC_T1--2	chr1:146728114	A	NA	77	0	77	37.195	7.439	0	0	0	74	0	CHD1L	intronic	NA
RCC_T1--3	chr1:146728114	A	NA	42	0	42	39.000	2.095	0	0	0	42	0	CHD1L	intronic	NA
RCC_T1--4	chr1:146728114	A	NA	47	0	47	38.723	2.740	0	0	0	46	0	CHD1L	intronic	NA
RCC_T1--5	chr1:146728114	A	G	54	0.333	36	38.750	2.359	18	37.500	4.120	36	16	CHD1L	intronic	NA
RCC_T1--6	chr1:146728114	A	G	59	0.051	56	33.911	10.062	3	30.667	14.468	46	2	CHD1L	intronic	NA
RCC_T1--7	chr1:146728114	A	NA	51	0	51	36.569	7.338	0	0	0	46	0	CHD1L	intronic	NA
RCC_T1--GL	chr1:146728114	A	NA	56	0	56	37.804	6.308	0	0	0	52	0	CHD1L	intronic	NA
RCC_T1--1	chr11:48601611	T	C	17	0.294	12	35.833	10.895	5	32.000	8.155	11	3	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--2	chr11:48601611	T	C	41	0.463	22	38.273	2.658	19	38.000	3.902	22	18	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--3	chr11:48601611	T	C	23	0.609	9	38.333	2.693	14	39.143	1.099	9	14	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--4	chr11:48601611	T	NA	28	0	28	36.821	3.859	0	0	0	26	0	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--5	chr11:48601611	T	C	41	0.390	25	38.880	1.833	16	38.500	2.422	25	16	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--6	chr11:48601611	T	C	41	0.171	34	34.206	9.604	7	36.286	4.608	29	6	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--7	chr11:48601611	T	C	27	0.296	19	37.158	5.220	8	37.750	4.833	18	7	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--GL	chr11:48601611	T	NA	44	0	44	35.500	8.465	0	0	0	40	0	OR4A47(dist=90337),TRIM49B(dist=451541)	intergenic	NA
RCC_T1--1	chr11:48998628	G	NA	41	0	41	37.390	5.054	0	0	0	38	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--2	chr11:48998628	G	NA	89	0	89	36.865	7.322	0	0	0	84	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--3	chr11:48998628	G	NA	61	0	61	38.426	3.068	0	0	0	59	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--4	chr11:48998628	G	A	60	0.333	40	37.850	3.773	20	37.450	3.252	38	20	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--5	chr11:48998628	G	NA	86	0	86	37.209	6.503	0	0	0	80	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--6	chr11:48998628	G	NA	64	0	64	34.266	9.301	0	0	0	51	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--7	chr11:48998628	G	NA	73	0	73	37.753	5.642	0	0	0	69	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--GL	chr11:48998628	G	NA	76	0	76	36.329	7.124	0	0	0	67	0	OR4A47(dist=487354),TRIM49B(dist=54524)	intergenic	NA
RCC_T1--1	chr1:158627327	G	NA	69	0	68	39.324	1.688	0	0	0	68	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--2	chr1:158627327	G	C	232	0.159	195	35.908	8.613	37	37.676	6.455	171	36	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--3	chr1:158627327	G	NA	99	0	99	37.960	5.322	0	0	0	93	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--4	chr1:158627327	G	NA	175	0	174	37.276	6.651	0	0	0	161	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--5	chr1:158627327	G	NA	218	0	217	37.673	6.024	0	0	0	207	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--6	chr1:158627327	G	NA	224	0	222	34.050	10.090	0	0	0	192	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--7	chr1:158627327	G	NA	206	0	206	36.854	8.318	0	0	0	189	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr1:158627327	G	NA	191	0	190	35.863	7.767	0	0	0	173	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T1--1	chr1:161017441	A	T	19	0.211	15	37.467	5.890	4	40.000	0.000	14	4	ARHGAP30	UTR3	NA
RCC_T1--2	chr1:161017441	A	NA	37	0	37	36.865	7.165	0	0	0	33	0	ARHGAP30	UTR3	NA
RCC_T1--3	chr1:161017441	A	NA	21	0	21	34.714	11.279	0	0	0	18	0	ARHGAP30	UTR3	NA
RCC_T1--4	chr1:161017441	A	NA	33	0	33	36.848	7.199	0	0	0	31	0	ARHGAP30	UTR3	NA
RCC_T1--5	chr1:161017441	A	NA	46	0	46	35.891	8.075	0	0	0	42	0	ARHGAP30	UTR3	NA
RCC_T1--6	chr1:161017441	A	NA	44	0	44	35.591	7.890	0	0	0	39	0	ARHGAP30	UTR3	NA
RCC_T1--7	chr1:161017441	A	NA	37	0	37	37.486	5.247	0	0	0	34	0	ARHGAP30	UTR3	NA
RCC_T1--GL	chr1:161017441	A	NA	38	0	38	34.868	10.369	0	0	0	33	0	ARHGAP30	UTR3	NA
RCC_T1--1	chr11:62560000	A	G	78	0.141	67	36.254	8.153	11	33.818	11.277	61	9	NXF1	intronic	NA
RCC_T1--2	chr11:62560000	A	G	216	0.222	166	35.494	9.288	48	36.271	7.949	147	44	NXF1	intronic	NA
RCC_T1--3	chr11:62560000	A	G	132	0.212	104	35.663	9.851	28	33.536	10.390	92	21	NXF1	intronic	NA
RCC_T1--4	chr11:62560000	A	G	166	0.313	114	35.202	10.053	52	34.327	11.212	98	44	NXF1	intronic	NA
RCC_T1--5	chr11:62560000	A	G	137	0.299	96	37.052	7.119	41	36.098	8.505	89	38	NXF1	intronic	NA
RCC_T1--6	chr11:62560000	A	G	265	0.083	243	30.486	12.870	22	30.818	13.161	177	17	NXF1	intronic	NA
RCC_T1--7	chr11:62560000	A	G	158	0.278	114	36.675	6.607	44	36.205	8.650	107	39	NXF1	intronic	NA
RCC_T1--GL	chr11:62560000	A	NA	231	0	230	33.496	9.940	0	0	0	190	0	NXF1	intronic	NA
RCC_T1--1	chr11:64575400	C	NA	14	0	14	34.929	9.950	0	0	0	12	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--2	chr11:64575400	C	NA	44	0	44	34.955	7.692	0	0	0	38	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--3	chr11:64575400	C	NA	25	0	24	35.917	6.877	0	0	0	22	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--4	chr11:64575400	C	T	26	0.231	20	37.000	4.243	6	29.833	14.233	19	4	MEN1	exonic	nonsynonymous_SNV
RCC_T1--5	chr11:64575400	C	NA	31	0	31	32.161	11.015	0	0	0	25	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--6	chr11:64575400	C	NA	47	0	47	28.511	12.318	0	0	0	28	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--7	chr11:64575400	C	NA	25	0	25	34.680	7.598	0	0	0	22	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr11:64575400	C	NA	41	0	41	34.585	8.261	0	0	0	37	0	MEN1	exonic	nonsynonymous_SNV
RCC_T1--1	chr11:71883569	G	T	44	0.068	40	37.875	2.747	3	39.667	0.577	40	3	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--2	chr11:71883569	G	T	71	0.268	52	35.135	8.237	19	36.316	3.544	44	19	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--3	chr11:71883569	G	T	51	0.275	37	35.973	6.986	14	35.500	10.211	33	13	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--4	chr11:71883569	G	NA	67	0	67	34.731	7.751	0	0	0	59	0	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--5	chr11:71883569	G	T	66	0.273	48	31.604	13.717	18	30.722	12.745	38	13	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--6	chr11:71883569	G	T	91	0.132	78	30.654	11.938	12	31.167	9.124	61	8	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--7	chr11:71883569	G	T	48	0.208	38	34.868	9.118	10	35.500	11.844	34	9	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--GL	chr11:71883569	G	NA	87	0	86	31.942	11.097	0	0	0	67	0	FOLR3(dist=32635),FOLR1(dist=17033)	intergenic	NA
RCC_T1--1	chr1:172501722	C	NA	34	0	34	38.235	3.046	0	0	0	34	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--2	chr1:172501722	C	NA	118	0	118	35.669	8.869	0	0	0	104	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--3	chr1:172501722	C	NA	60	0	60	37.317	6.716	0	0	0	55	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--4	chr1:172501722	C	NA	102	0	102	36.363	8.785	0	0	0	92	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--5	chr1:172501722	C	NA	133	0	133	37.083	7.720	0	0	0	125	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--6	chr1:172501722	C	NA	304	0	304	34.734	9.544	0	0	0	263	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--7	chr1:172501722	C	T	135	0.230	104	37.288	5.276	31	36.355	7.437	97	27	SUCO	exonic	nonsynonymous_SNV
RCC_T1--GL	chr1:172501722	C	NA	77	0	77	35.247	9.511	0	0	0	69	0	SUCO	exonic	nonsynonymous_SNV
RCC_T1--1	chr1:184662411	G	A	18	0.111	16	39.188	2.316	2	40.000	0.000	16	2	EDEM3	UTR3	NA
RCC_T1--2	chr1:184662411	G	A	59	0.305	41	38.805	2.561	18	38.222	2.691	40	18	EDEM3	UTR3	NA
RCC_T1--3	chr1:184662411	G	A	31	0.194	24	38.292	5.575	6	38.333	2.582	23	6	EDEM3	UTR3	NA
RCC_T1--4	chr1:184662411	G	NA	46	0	46	37.174	7.472	0	0	0	41	0	EDEM3	UTR3	NA
RCC_T1--5	chr1:184662411	G	A	96	0.167	80	38.237	4.848	16	37.625	4.717	78	15	EDEM3	UTR3	NA
RCC_T1--6	chr1:184662411	G	A	80	0.062	75	36.293	8.015	5	39.600	0.548	69	5	EDEM3	UTR3	NA
RCC_T1--7	chr1:184662411	G	A	94	0.298	66	35.742	10.339	28	39.214	1.572	59	28	EDEM3	UTR3	NA
RCC_T1--GL	chr1:184662411	G	NA	67	0	67	37.776	5.535	0	0	0	65	0	EDEM3	UTR3	NA
RCC_T1--1	chr11:85689189	A	T	50	0.120	44	39.432	1.835	6	36.667	4.803	44	6	PICALM	intronic	NA
RCC_T1--2	chr11:85689189	A	T	137	0.153	116	36.345	8.662	21	37.476	5.689	105	20	PICALM	intronic	NA
RCC_T1--3	chr11:85689189	A	T	64	0.266	47	39.000	3.356	17	37.941	5.815	46	16	PICALM	intronic	NA
RCC_T1--4	chr11:85689189	A	T	70	0.386	43	38.000	4.711	27	36.741	8.094	39	24	PICALM	intronic	NA
RCC_T1--5	chr11:85689189	A	T	78	0.244	57	37.368	7.717	19	39.000	1.599	53	19	PICALM	intronic	NA
RCC_T1--6	chr11:85689189	A	T	116	0.060	109	36.532	7.530	7	37.429	5.094	100	6	PICALM	intronic	NA
RCC_T1--7	chr11:85689189	A	T	72	0.319	49	38.796	2.264	23	36.217	6.417	49	20	PICALM	intronic	NA
RCC_T1--GL	chr11:85689189	A	NA	119	0	119	37.882	5.630	0	0	0	113	0	PICALM	intronic	NA
RCC_T1--1	chr11:93412631	A	G	73	0.082	67	38.597	5.000	6	37.000	3.098	65	6	KIAA1731	exonic	synonymous_SNV
RCC_T1--2	chr11:93412631	A	G	210	0.281	150	37.240	6.988	59	36.780	7.616	142	55	KIAA1731	exonic	synonymous_SNV
RCC_T1--3	chr11:93412631	A	G	116	0.164	97	37.670	7.128	19	35.368	9.581	91	16	KIAA1731	exonic	synonymous_SNV
RCC_T1--4	chr11:93412631	A	G	148	0.270	108	37.491	6.306	40	37.200	5.229	102	36	KIAA1731	exonic	synonymous_SNV
RCC_T1--5	chr11:93412631	A	G	146	0.151	124	37.855	6.542	22	39.273	1.120	119	22	KIAA1731	exonic	synonymous_SNV
RCC_T1--6	chr11:93412631	A	G	273	0.051	259	34.668	10.147	14	34.643	9.865	222	12	KIAA1731	exonic	synonymous_SNV
RCC_T1--7	chr11:93412631	A	G	143	0.273	104	36.385	8.787	39	37.846	3.696	95	37	KIAA1731	exonic	synonymous_SNV
RCC_T1--GL	chr11:93412631	A	NA	209	0	208	36.385	7.851	0	0	0	190	0	KIAA1731	exonic	synonymous_SNV
RCC_T1--1	chr11:93797642	A	T	102	0.147	87	38.241	5.320	15	39.000	1.773	84	15	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--2	chr11:93797642	A	T	205	0.220	160	37.950	4.208	45	38.533	5.663	151	44	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--3	chr11:93797642	A	T	116	0.190	94	37.681	6.160	22	39.000	1.480	88	22	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--4	chr11:93797642	A	NA	159	0	159	37.704	5.947	0	0	0	152	0	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--5	chr11:93797642	A	T	170	0.124	149	38.329	3.258	21	37.714	3.849	143	20	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--6	chr11:93797642	A	T	243	0.066	226	35.075	8.401	16	35.875	6.281	193	14	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--7	chr11:93797642	A	T	181	0.249	136	37.235	7.832	45	37.378	5.416	125	42	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr11:93797642	A	NA	209	0	208	36.149	7.870	0	0	0	182	0	HEPHL1	exonic	nonsynonymous_SNV
RCC_T1--1	chr11:93921594	C	T	25	0.080	23	37.609	3.690	2	40.000	0.000	22	2	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--2	chr11:93921594	C	T	65	0.246	49	35.184	8.592	16	38.188	3.038	44	15	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--3	chr11:93921594	C	T	37	0.243	28	37.357	7.314	9	34.222	12.194	27	8	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--4	chr11:93921594	C	T	59	0.373	37	37.135	6.605	22	37.364	3.001	35	22	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--5	chr11:93921594	C	T	57	0.193	46	36.326	8.623	11	35.273	11.118	41	10	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--6	chr11:93921594	C	T	66	0.061	62	32.290	11.615	4	38.750	0.957	52	4	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--7	chr11:93921594	C	T	55	0.200	44	36.023	8.844	11	34.909	11.193	39	10	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--GL	chr11:93921594	C	NA	63	0	62	35.694	6.253	0	0	0	55	0	PANX1(dist=6457),FOLR4(dist=117209)	intergenic	NA
RCC_T1--1	chr12:102158434	A	G	48	0.042	46	39.196	2.029	2	40.000	0.000	45	2	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:102158434	A	G	112	0.232	86	37.221	7.383	26	37.808	3.299	81	25	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:102158434	A	G	56	0.143	47	37.596	5.038	8	37.500	4.870	43	7	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:102158434	A	G	85	0.282	61	38.246	4.418	24	38.667	2.239	59	24	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:102158434	A	G	111	0.153	94	38.234	3.814	17	36.176	9.262	89	16	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:102158434	A	G	109	0.073	101	34.743	8.002	8	34.125	6.534	84	6	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:102158434	A	G	105	0.248	79	38.266	4.974	26	38.385	4.948	77	25	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:102158434	A	NA	87	0	85	36.671	6.924	0	0	0	78	0	GNPTAB	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:121867936	G	A	56	0.071	51	37.137	5.466	4	39.000	2.000	46	4	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:121867936	G	A	159	0.182	130	34.992	10.301	29	31.345	13.291	116	24	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:121867936	G	A	95	0.274	69	36.913	7.020	26	38.462	2.687	64	26	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:121867936	G	A	103	0.340	66	36.561	6.041	35	37.429	3.284	61	33	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:121867936	G	A	135	0.111	120	36.933	7.153	15	34.600	10.280	113	13	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:121867936	G	A	155	0.058	145	30.559	12.195	9	26.444	16.024	105	5	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:121867936	G	A	80	0.200	64	37.781	5.385	16	36.938	3.820	61	15	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:121867936	G	NA	120	0	120	35.142	7.290	0	0	0	103	0	KDM2B	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:124274768	A	T	12	0.083	11	39.909	0.302	1	39.000	0.000	11	1	DNAH10	intronic	NA
RCC_T1--2	chr12:124274768	A	T	56	0.036	54	37.204	8.010	2	39.500	0.707	49	2	DNAH10	intronic	NA
RCC_T1--3	chr12:124274768	A	NA	26	0	26	39.577	1.447	0	0	0	26	0	DNAH10	intronic	NA
RCC_T1--4	chr12:124274768	A	T	34	0.029	33	38.121	4.682	1	39.000	0.000	30	1	DNAH10	intronic	NA
RCC_T1--5	chr12:124274768	A	T	42	0.048	40	38.875	2.830	2	39.500	0.707	39	2	DNAH10	intronic	NA
RCC_T1--6	chr12:124274768	A	T	40	0.100	36	38.528	2.348	4	35.500	8.347	35	3	DNAH10	intronic	NA
RCC_T1--7	chr12:124274768	A	T	37	0.162	31	37.774	4.883	6	39.333	0.816	28	6	DNAH10	intronic	NA
RCC_T1--GL	chr12:124274768	A	NA	33	0	33	37.455	3.700	0	0	0	31	0	DNAH10	intronic	NA
RCC_T1--1	chr12:130927064	C	T	40	0.075	37	38.108	2.675	3	36.333	3.786	37	3	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:130927064	C	T	98	0.235	75	34.120	10.699	23	32.652	8.896	63	20	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:130927064	C	T	56	0.107	50	37.340	6.103	6	30.000	8.319	47	3	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:130927064	C	NA	75	0	75	35.293	8.992	0	0	0	68	0	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:130927064	C	T	93	0.129	81	35.593	7.488	12	37.417	4.010	69	11	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:130927064	C	T	75	0.093	68	31.412	11.897	7	28.286	12.919	52	5	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:130927064	C	T	85	0.247	64	35.078	7.941	21	32.143	11.534	53	16	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:130927064	C	NA	85	0	84	32.536	11.364	0	0	0	65	0	RIMBP2	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:133768562	G	A	91	0.165	75	38.467	4.886	15	37.200	9.756	73	14	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:133768562	G	A	270	0.407	158	37.165	6.311	110	36.327	6.738	145	100	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:133768562	G	A	142	0.345	93	37.774	6.456	49	38.959	1.443	89	49	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:133768562	G	A	181	0.309	124	38.161	5.101	56	37.071	5.768	122	53	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:133768562	G	A	264	0.379	164	37.683	6.166	100	36.410	6.366	154	94	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:133768562	G	A	202	0.109	180	34.578	9.425	22	32.500	11.455	157	17	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:133768562	G	A	158	0.380	97	37.670	5.320	60	37.433	4.401	92	58	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:133768562	G	NA	222	0	220	36.668	6.969	0	0	0	202	0	ZNF268	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:14679947	G	A	41	0.122	36	39.278	2.581	5	39.200	1.789	35	5	PLBD1	intronic	NA
RCC_T1--2	chr12:14679947	G	A	178	0.208	141	36.730	6.466	37	37.973	3.476	129	36	PLBD1	intronic	NA
RCC_T1--3	chr12:14679947	G	A	66	0.212	52	38.731	5.285	14	39.071	1.328	51	14	PLBD1	intronic	NA
RCC_T1--4	chr12:14679947	G	NA	85	0	85	38.118	3.469	0	0	0	81	0	PLBD1	intronic	NA
RCC_T1--5	chr12:14679947	G	A	98	0.204	78	38.603	3.034	20	38.150	3.183	76	20	PLBD1	intronic	NA
RCC_T1--6	chr12:14679947	G	A	94	0.064	88	35.659	6.974	6	33.500	8.456	76	5	PLBD1	intronic	NA
RCC_T1--7	chr12:14679947	G	A	90	0.233	69	38.203	5.034	21	38.333	2.921	67	21	PLBD1	intronic	NA
RCC_T1--GL	chr12:14679947	G	NA	120	0	119	37.487	5.150	0	0	0	112	0	PLBD1	intronic	NA
RCC_T1--1	chr12:21630863	G	NA	53	0	53	36.868	8.877	0	0	0	49	0	RECQL	exonic	synonymous_SNV
RCC_T1--2	chr12:21630863	G	NA	174	0	174	36.730	7.670	0	0	0	162	0	RECQL	exonic	synonymous_SNV
RCC_T1--3	chr12:21630863	G	NA	75	0	75	38.093	3.301	0	0	0	72	0	RECQL	exonic	synonymous_SNV
RCC_T1--4	chr12:21630863	G	NA	129	0	129	37.155	7.364	0	0	0	122	0	RECQL	exonic	synonymous_SNV
RCC_T1--5	chr12:21630863	G	A	145	0.138	125	37.472	6.508	20	38.550	1.877	117	20	RECQL	exonic	synonymous_SNV
RCC_T1--6	chr12:21630863	G	NA	168	0	168	33.637	10.339	0	0	0	139	0	RECQL	exonic	synonymous_SNV
RCC_T1--7	chr12:21630863	G	NA	120	0	120	36.967	8.066	0	0	0	113	0	RECQL	exonic	synonymous_SNV
RCC_T1--GL	chr12:21630863	G	NA	150	0	146	35.610	8.425	0	0	0	128	0	RECQL	exonic	synonymous_SNV
RCC_T1--1	chr1:237532838	C	NA	30	0	30	38.200	4.246	0	0	0	28	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--2	chr1:237532838	C	NA	98	0	98	36.459	7.652	0	0	0	89	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--3	chr1:237532838	C	NA	45	0	45	39.111	2.166	0	0	0	45	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--4	chr1:237532838	C	NA	60	0	60	37.117	7.654	0	0	0	56	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--5	chr1:237532838	C	NA	88	0	87	36.609	7.303	0	0	0	78	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--6	chr1:237532838	C	NA	99	0	99	36.242	6.362	0	0	0	86	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--7	chr1:237532838	C	T	90	0.267	66	36.227	9.646	24	37.500	7.757	61	23	RYR2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr1:237532838	C	NA	69	0	69	36.841	7.029	0	0	0	64	0	RYR2	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:38597553	G	T	14	0.143	12	38.583	3.423	2	32.000	2.828	11	2	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--2	chr12:38597553	G	T	51	0.176	42	36.262	7.411	9	32.556	7.055	39	6	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--3	chr12:38597553	G	T	33	0.152	28	39.179	1.517	5	34.800	8.289	28	4	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--4	chr12:38597553	G	T	47	0.191	38	36.947	6.551	9	35.556	3.468	36	8	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--5	chr12:38597553	G	T	44	0.159	37	39.081	2.241	7	38.000	2.160	36	7	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--6	chr12:38597553	G	T	74	0.135	64	32.375	12.086	10	34.000	6.074	49	9	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--7	chr12:38597553	G	T	45	0.156	38	36.842	8.617	7	35.143	4.488	36	6	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--GL	chr12:38597553	G	NA	46	0	45	35.533	8.176	0	0	0	40	0	NONE(dist=NONE),ALG10B(dist=113004)	intergenic	NA
RCC_T1--1	chr12:40805856	C	NA	22	0	22	35.273	7.408	0	0	0	20	0	MUC19	exonic	unknown
RCC_T1--2	chr12:40805856	C	T	90	0.211	70	33.814	11.590	19	34.632	11.753	60	17	MUC19	exonic	unknown
RCC_T1--3	chr12:40805856	C	T	43	0.209	32	30.969	12.704	9	29.333	15.788	22	7	MUC19	exonic	unknown
RCC_T1--4	chr12:40805856	C	NA	64	0	62	31.613	12.497	0	0	0	46	0	MUC19	exonic	unknown
RCC_T1--5	chr12:40805856	C	T	79	0.177	64	34.031	8.921	14	36.643	10.012	54	13	MUC19	exonic	unknown
RCC_T1--6	chr12:40805856	C	NA	62	0	51	25.784	15.954	0	0	0	30	0	MUC19	exonic	unknown
RCC_T1--7	chr12:40805856	C	T	71	0.127	62	35.790	4.883	9	33.889	12.434	54	8	MUC19	exonic	unknown
RCC_T1--GL	chr12:40805856	C	NA	63	0	46	27.848	15.452	0	0	0	28	0	MUC19	exonic	unknown
RCC_T1--1	chr12:41327278	A	G	83	0.145	71	38.479	4.717	12	38.500	2.153	70	12	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:41327278	A	G	319	0.182	261	36.893	7.262	58	36.879	7.240	240	55	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:41327278	A	G	129	0.132	111	38.622	2.690	17	39.765	0.562	107	17	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:41327278	A	NA	161	0	161	37.087	7.822	0	0	0	153	0	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:41327278	A	G	264	0.178	217	36.862	8.283	47	37.979	4.980	202	43	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:41327278	A	G	190	0.068	175	36.177	6.949	13	32.615	13.182	158	10	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:41327278	A	G	228	0.206	181	37.365	7.137	47	34.809	11.236	168	40	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:41327278	A	NA	156	0	154	36.688	7.817	0	0	0	143	0	CNTN1	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:53202570	C	NA	42	0	41	35.902	8.224	0	0	0	38	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--2	chr12:53202570	C	NA	84	0	84	35.714	7.620	0	0	0	76	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--3	chr12:53202570	C	NA	105	0	104	33.875	10.514	0	0	0	89	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--4	chr12:53202570	C	NA	79	0	77	35.935	6.999	0	0	0	69	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--5	chr12:53202570	C	NA	145	0	145	36.159	6.839	0	0	0	132	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--6	chr12:53202570	C	NA	103	0	103	33.398	9.738	0	0	0	91	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--7	chr12:53202570	C	T	106	0.208	83	35.843	7.791	22	36.045	5.900	76	21	KRT4	exonic	nonsynonymous_SNV
RCC_T1--GL	chr12:53202570	C	NA	104	0	104	34.135	8.981	0	0	0	92	0	KRT4	exonic	nonsynonymous_SNV
RCC_T1--1	chr12:56814330	G	NA	21	0	21	38.857	2.330	0	0	0	21	0	TIMELESS	intronic	NA
RCC_T1--2	chr12:56814330	G	NA	60	0	60	34.150	10.689	0	0	0	51	0	TIMELESS	intronic	NA
RCC_T1--3	chr12:56814330	G	NA	37	0	37	37.378	4.172	0	0	0	35	0	TIMELESS	intronic	NA
RCC_T1--4	chr12:56814330	G	NA	41	0	41	35.732	7.645	0	0	0	36	0	TIMELESS	intronic	NA
RCC_T1--5	chr12:56814330	G	NA	53	0	52	37.769	3.909	0	0	0	50	0	TIMELESS	intronic	NA
RCC_T1--6	chr12:56814330	G	NA	55	0	54	33.852	11.419	0	0	0	45	0	TIMELESS	intronic	NA
RCC_T1--7	chr12:56814330	G	C	35	0.171	29	37.793	7.022	6	37.833	3.430	28	6	TIMELESS	intronic	NA
RCC_T1--GL	chr12:56814330	G	NA	44	0	44	33.750	11.532	0	0	0	37	0	TIMELESS	intronic	NA
RCC_T1--1	chr13:103514868	C	NA	30	0	30	35.133	4.493	0	0	0	27	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--2	chr13:103514868	C	A	64	0.016	63	35.714	6.472	1	40.000	0.000	57	1	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--3	chr13:103514868	C	NA	42	0	42	35.286	8.660	0	0	0	38	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--4	chr13:103514868	C	A	77	0.351	50	35.120	5.329	27	37.556	6.047	42	24	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--5	chr13:103514868	C	NA	51	0	51	35.549	6.143	0	0	0	46	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--6	chr13:103514868	C	NA	94	0	91	30.187	10.272	0	0	0	63	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--7	chr13:103514868	C	NA	53	0	53	30.679	13.001	0	0	0	39	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--GL	chr13:103514868	C	NA	77	0	75	29.907	10.158	0	0	0	49	0	BIVM-ERCC5,ERCC5	exonic	nonsynonymous_SNV
RCC_T1--1	chr13:45961916	C	T	23	0.130	20	38.050	3.284	3	40.000	0.000	19	3	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--2	chr13:45961916	C	T	22	0.182	18	37.500	4.356	4	36.750	6.500	17	3	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--3	chr13:45961916	C	T	26	0.346	17	37.882	5.544	9	39.778	0.667	16	9	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--4	chr13:45961916	C	T	31	0.419	18	39.056	1.211	13	39.000	1.958	18	13	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--5	chr13:45961916	C	T	28	0.500	14	35.857	4.348	14	38.071	4.514	13	13	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--6	chr13:45961916	C	T	27	0.148	23	35.913	8.554	4	36.750	2.217	21	4	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--7	chr13:45961916	C	T	25	0.440	14	39.571	0.646	11	38.455	1.916	14	11	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--GL	chr13:45961916	C	NA	43	0	42	35.452	7.006	0	0	0	36	0	TPT1-AS1	ncRNA_intronic	NA
RCC_T1--1	chr13:51503725	G	A	13	0.231	10	39.900	0.316	3	40.000	0.000	10	3	RNASEH2B	intronic	NA
RCC_T1--2	chr13:51503725	G	NA	37	0	37	37.946	2.877	0	0	0	36	0	RNASEH2B	intronic	NA
RCC_T1--3	chr13:51503725	G	NA	22	0	22	37.682	8.369	0	0	0	20	0	RNASEH2B	intronic	NA
RCC_T1--4	chr13:51503725	G	NA	36	0	36	39.417	1.105	0	0	0	36	0	RNASEH2B	intronic	NA
RCC_T1--5	chr13:51503725	G	NA	22	0	22	39.318	2.358	0	0	0	21	0	RNASEH2B	intronic	NA
RCC_T1--6	chr13:51503725	G	NA	52	0	51	35.863	10.288	0	0	0	46	0	RNASEH2B	intronic	NA
RCC_T1--7	chr13:51503725	G	NA	30	0	30	36.800	8.248	0	0	0	26	0	RNASEH2B	intronic	NA
RCC_T1--GL	chr13:51503725	G	NA	55	0	54	36.222	8.411	0	0	0	48	0	RNASEH2B	intronic	NA
RCC_T1--1	chr13:78163254	T	NA	47	0	47	38.723	2.233	0	0	0	47	0	SCEL	intronic	NA
RCC_T1--2	chr13:78163254	T	NA	142	0	142	36.789	7.457	0	0	0	131	0	SCEL	intronic	NA
RCC_T1--3	chr13:78163254	T	NA	64	0	64	39.031	2.100	0	0	0	63	0	SCEL	intronic	NA
RCC_T1--4	chr13:78163254	T	G	104	0.317	71	36.775	8.186	33	37.788	4.904	64	30	SCEL	intronic	NA
RCC_T1--5	chr13:78163254	T	NA	108	0	107	37.495	5.025	0	0	0	99	0	SCEL	intronic	NA
RCC_T1--6	chr13:78163254	T	NA	155	0	155	34.348	9.590	0	0	0	131	0	SCEL	intronic	NA
RCC_T1--7	chr13:78163254	T	NA	87	0	86	37.430	6.547	0	0	0	82	0	SCEL	intronic	NA
RCC_T1--GL	chr13:78163254	T	NA	127	0	124	34.395	10.132	0	0	0	105	0	SCEL	intronic	NA
RCC_T1--1	chr13:98634712	A	NA	26	0	26	37.423	3.900	0	0	0	24	0	IPO5	intronic	NA
RCC_T1--2	chr13:98634712	A	NA	55	0	55	33.745	9.615	0	0	0	44	0	IPO5	intronic	NA
RCC_T1--3	chr13:98634712	A	NA	16	0	16	38.625	1.746	0	0	0	16	0	IPO5	intronic	NA
RCC_T1--4	chr13:98634712	A	G	47	0.340	31	35.387	9.770	16	37.500	5.727	26	15	IPO5	intronic	NA
RCC_T1--5	chr13:98634712	A	NA	33	0	33	36.848	6.920	0	0	0	30	0	IPO5	intronic	NA
RCC_T1--6	chr13:98634712	A	NA	52	0	52	35.731	7.335	0	0	0	47	0	IPO5	intronic	NA
RCC_T1--7	chr13:98634712	A	NA	21	0	21	38.952	1.499	0	0	0	21	0	IPO5	intronic	NA
RCC_T1--GL	chr13:98634712	A	NA	44	0	43	35.698	7.411	0	0	0	38	0	IPO5	intronic	NA
RCC_T1--1	chr14:20137454	C	NA	53	0	53	36.094	8.789	0	0	0	50	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--2	chr14:20137454	C	T	97	0.175	78	35.910	7.740	17	32.706	11.873	71	15	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--3	chr14:20137454	C	NA	59	0	58	35.569	8.533	0	0	0	52	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--4	chr14:20137454	C	NA	131	0	131	33.954	11.178	0	0	0	111	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--5	chr14:20137454	C	NA	102	0	102	36.902	5.649	0	0	0	94	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--6	chr14:20137454	C	NA	100	0	100	31.610	12.719	0	0	0	80	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--7	chr14:20137454	C	NA	68	0	68	35.412	9.062	0	0	0	61	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--GL	chr14:20137454	C	NA	121	0	121	34.074	9.405	0	0	0	104	0	POTEM(dist=117182),OR11H2(dist=43609)	intergenic	NA
RCC_T1--1	chr14:20766998	G	T	27	0.148	23	38.130	2.928	4	39.750	0.500	22	4	TTC5	exonic	nonsynonymous_SNV
RCC_T1--2	chr14:20766998	G	NA	33	0	33	36.212	7.266	0	0	0	29	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--3	chr14:20766998	G	NA	22	0	22	37.591	8.069	0	0	0	21	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--4	chr14:20766998	G	NA	32	0	32	38.281	2.453	0	0	0	32	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--5	chr14:20766998	G	NA	31	0	31	37.419	5.334	0	0	0	28	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--6	chr14:20766998	G	NA	51	0	51	35.137	9.297	0	0	0	43	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--7	chr14:20766998	G	NA	20	0	20	33.300	12.070	0	0	0	16	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--GL	chr14:20766998	G	NA	52	0	52	36.346	8.034	0	0	0	48	0	TTC5	exonic	nonsynonymous_SNV
RCC_T1--1	chr14:21966415	G	C	18	0.167	15	36.667	9.693	3	40.000	0.000	14	3	METTL3	exonic	nonsynonymous_SNV
RCC_T1--2	chr14:21966415	G	C	37	0.324	25	39.160	1.951	12	38.167	3.512	25	11	METTL3	exonic	nonsynonymous_SNV
RCC_T1--3	chr14:21966415	G	C	26	0.077	24	36.667	8.850	2	40.000	0.000	22	2	METTL3	exonic	nonsynonymous_SNV
RCC_T1--4	chr14:21966415	G	C	37	0.270	27	37.741	4.302	10	35.200	11.924	26	9	METTL3	exonic	nonsynonymous_SNV
RCC_T1--5	chr14:21966415	G	C	45	0.378	28	36.500	7.867	17	37.235	9.148	25	16	METTL3	exonic	nonsynonymous_SNV
RCC_T1--6	chr14:21966415	G	C	73	0.123	64	34.219	11.123	9	39.111	1.537	54	9	METTL3	exonic	nonsynonymous_SNV
RCC_T1--7	chr14:21966415	G	C	21	0.619	8	39.500	1.069	13	36.769	6.444	8	12	METTL3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr14:21966415	G	NA	74	0	73	37.055	6.906	0	0	0	68	0	METTL3	exonic	nonsynonymous_SNV
RCC_T1--1	chr1:45246312	G	NA	15	0	13	37.077	6.837	0	0	0	12	0	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--2	chr1:45246312	G	T	53	0.302	37	37.108	4.267	16	38.375	2.655	33	16	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--3	chr1:45246312	G	T	44	0.182	35	38.114	4.100	8	34.000	4.140	34	7	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--4	chr1:45246312	G	NA	63	0	63	38.032	4.092	0	0	0	62	0	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--5	chr1:45246312	G	T	41	0.244	31	38.548	2.461	10	37.500	2.799	31	10	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--6	chr1:45246312	G	T	53	0.094	47	36.617	4.901	5	22.600	13.278	43	1	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--7	chr1:45246312	G	T	37	0.297	26	36.808	7.689	11	36.909	2.737	24	11	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--GL	chr1:45246312	G	NA	59	0	59	35.780	6.610	0	0	0	51	0	RPS8(dist=1900),BEST4(dist=2945)	intergenic	NA
RCC_T1--1	chr14:89084500	A	G	42	0.048	40	38.850	3.371	2	40.000	0.000	39	2	EML5	intronic	NA
RCC_T1--2	chr14:89084500	A	G	105	0.238	80	37.750	6.401	25	35.920	8.326	77	21	EML5	intronic	NA
RCC_T1--3	chr14:89084500	A	G	51	0.255	38	39.105	1.657	13	39.077	2.139	38	13	EML5	intronic	NA
RCC_T1--4	chr14:89084500	A	G	99	0.313	68	37.662	6.821	31	38.355	3.231	64	30	EML5	intronic	NA
RCC_T1--5	chr14:89084500	A	G	79	0.380	49	37.837	4.976	30	36.433	8.869	47	28	EML5	intronic	NA
RCC_T1--6	chr14:89084500	A	G	132	0.098	119	35.924	8.288	13	30.462	12.640	107	9	EML5	intronic	NA
RCC_T1--7	chr14:89084500	A	G	67	0.388	41	38.756	3.576	26	38.846	3.343	39	25	EML5	intronic	NA
RCC_T1--GL	chr14:89084500	A	NA	104	0	104	36.923	7.039	0	0	0	96	0	EML5	intronic	NA
RCC_T1--1	chr14:89154758	T	NA	174	0	172	38.343	3.111	0	0	0	166	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--2	chr14:89154758	T	NA	395	0	392	36.633	7.025	0	0	0	363	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--3	chr14:89154758	T	NA	186	0	186	37.672	5.663	0	0	0	178	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--4	chr14:89154758	T	A	316	0.193	255	37.098	6.282	61	38.197	3.326	238	59	EML5	exonic	nonsynonymous_SNV
RCC_T1--5	chr14:89154758	T	NA	306	0	306	37.471	5.550	0	0	0	287	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--6	chr14:89154758	T	NA	456	0	453	33.631	9.548	0	0	0	369	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--7	chr14:89154758	T	NA	256	0	256	37.324	6.029	0	0	0	239	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--GL	chr14:89154758	T	NA	470	0	470	35.351	8.005	0	0	0	415	0	EML5	exonic	nonsynonymous_SNV
RCC_T1--1	chr14:95910973	G	C	11	0.091	10	38.200	2.394	1	36.000	0.000	10	1	SYNE3	intronic	NA
RCC_T1--2	chr14:95910973	G	C	22	0.045	21	34.238	11.211	1	37.000	0.000	18	1	SYNE3	intronic	NA
RCC_T1--3	chr14:95910973	G	C	15	0.067	14	38.357	3.671	1	39.000	0.000	13	1	SYNE3	intronic	NA
RCC_T1--4	chr14:95910973	G	C	33	0.030	32	37.781	3.443	1	36.000	0.000	31	1	SYNE3	intronic	NA
RCC_T1--5	chr14:95910973	G	C	14	0.214	11	37.545	4.009	3	39.667	0.577	10	3	SYNE3	intronic	NA
RCC_T1--6	chr14:95910973	G	C	33	0.030	32	34.312	7.706	1	30.000	0.000	27	1	SYNE3	intronic	NA
RCC_T1--7	chr14:95910973	G	C	27	0.037	26	36.923	5.114	1	40.000	0.000	23	1	SYNE3	intronic	NA
RCC_T1--GL	chr14:95910973	G	NA	44	0	43	35.116	8.466	0	0	0	39	0	SYNE3	intronic	NA
RCC_T1--1	chr15:31239408	C	G	88	0.159	73	37.425	4.833	14	36.429	10.005	68	13	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--2	chr15:31239408	C	G	233	0.245	176	35.119	9.175	57	36.561	6.456	153	50	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--3	chr15:31239408	C	G	121	0.223	94	37.511	5.186	27	34.630	11.307	87	23	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--4	chr15:31239408	C	NA	222	0	221	37.290	6.273	0	0	0	208	0	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--5	chr15:31239408	C	G	263	0.240	200	36.790	7.275	63	37.270	6.665	185	58	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--6	chr15:31239408	C	G	286	0.094	258	32.833	11.211	27	34.852	9.024	207	23	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--7	chr15:31239408	C	G	213	0.300	149	37.114	5.740	64	36.453	8.761	141	59	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--GL	chr15:31239408	C	NA	268	0	267	34.217	9.402	0	0	0	226	0	MTMR10	exonic	nonsynonymous_SNV
RCC_T1--1	chr15:33358717	T	G	48	0.104	43	38.860	3.590	5	36.600	7.057	42	4	FMN1	exonic	nonsynonymous_SNV
RCC_T1--2	chr15:33358717	T	G	109	0.202	87	36.437	6.850	22	36.773	8.188	80	20	FMN1	exonic	nonsynonymous_SNV
RCC_T1--3	chr15:33358717	T	G	55	0.145	47	37.617	5.173	8	39.000	2.070	44	8	FMN1	exonic	nonsynonymous_SNV
RCC_T1--4	chr15:33358717	T	G	104	0.404	62	34.710	10.687	42	37.833	6.254	55	40	FMN1	exonic	nonsynonymous_SNV
RCC_T1--5	chr15:33358717	T	G	95	0.274	69	38.609	2.510	26	39.538	1.208	68	26	FMN1	exonic	nonsynonymous_SNV
RCC_T1--6	chr15:33358717	T	G	128	0.047	122	34.238	10.146	6	34.667	11.622	103	5	FMN1	exonic	nonsynonymous_SNV
RCC_T1--7	chr15:33358717	T	G	96	0.281	69	35.261	10.163	27	38.704	2.998	62	26	FMN1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr15:33358717	T	NA	97	0	97	36.814	6.942	0	0	0	92	0	FMN1	exonic	nonsynonymous_SNV
RCC_T1--1	chr15:34102786	G	NA	73	0	72	36.903	7.947	0	0	0	67	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--2	chr15:34102786	G	NA	131	0	129	34.783	10.058	0	0	0	113	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--3	chr15:34102786	G	NA	97	0	97	35.835	9.441	0	0	0	88	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--4	chr15:34102786	G	C	108	0.167	90	37.233	6.049	18	39.167	1.249	85	18	RYR3	exonic	nonsynonymous_SNV
RCC_T1--5	chr15:34102786	G	NA	160	0	160	36.056	8.412	0	0	0	146	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--6	chr15:34102786	G	NA	133	0	133	33.068	10.742	0	0	0	111	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--7	chr15:34102786	G	NA	129	0	128	36.508	7.050	0	0	0	117	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr15:34102786	G	NA	155	0	155	35.361	8.418	0	0	0	138	0	RYR3	exonic	nonsynonymous_SNV
RCC_T1--1	chr15:45507955	A	C	11	0.273	8	39.500	0.535	3	39.667	0.577	8	3	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--2	chr15:45507955	A	C	34	0.147	29	37.655	4.082	5	28.200	15.369	27	3	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--3	chr15:45507955	A	C	19	0.211	15	35.867	9.906	4	38.250	3.500	14	4	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--4	chr15:45507955	A	NA	32	0	31	37.323	4.519	0	0	0	29	0	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--5	chr15:45507955	A	C	38	0.289	26	37.538	3.712	11	38.455	2.339	24	11	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--6	chr15:45507955	A	C	40	0.025	39	35.051	8.249	1	40.000	0.000	33	1	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--7	chr15:45507955	A	C	28	0.036	27	38.778	1.888	1	40.000	0.000	27	1	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--GL	chr15:45507955	A	NA	55	0	54	35.407	9.406	0	0	0	45	0	SHF(dist=14582),SLC28A2(dist=36473)	intergenic	NA
RCC_T1--1	chr15:51285630	G	T	20	0.200	16	39.062	1.611	4	38.500	2.380	16	4	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--2	chr15:51285630	G	NA	97	0	97	38.278	5.184	0	0	0	94	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--3	chr15:51285630	G	NA	29	0	29	39.069	1.580	0	0	0	29	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--4	chr15:51285630	G	NA	54	0	54	38.519	2.676	0	0	0	53	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--5	chr15:51285630	G	NA	80	0	79	38.000	5.345	0	0	0	75	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--6	chr15:51285630	G	NA	81	0	81	34.111	11.296	0	0	0	67	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--7	chr15:51285630	G	NA	50	0	50	37.780	5.719	0	0	0	49	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr15:51285630	G	NA	87	0	87	36.874	7.164	0	0	0	82	0	AP4E1	exonic	nonsynonymous_SNV
RCC_T1--1	chr15:62535626	C	NA	57	0	57	37.719	5.473	0	0	0	55	0	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--2	chr15:62535626	C	NA	104	0	103	33.505	10.621	0	0	0	87	0	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--3	chr15:62535626	C	NA	80	0	80	37.737	5.167	0	0	0	77	0	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--4	chr15:62535626	C	NA	118	0	118	35.839	7.511	0	0	0	107	0	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--5	chr15:62535626	C	T	134	0.261	99	36.919	6.504	35	36.086	6.505	91	32	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--6	chr15:62535626	C	T	114	0.088	104	34.154	9.363	10	32.000	11.479	93	7	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--7	chr15:62535626	C	T	116	0.224	90	35.700	8.474	26	35.038	8.725	81	22	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--GL	chr15:62535626	C	NA	109	0	108	33.509	11.080	0	0	0	93	0	C2CD4B(dist=78144),MIR8067(dist=61231)	intergenic	NA
RCC_T1--1	chr15:65994348	T	NA	23	0	23	38.565	2.390	0	0	0	23	0	DENND4A	intronic	NA
RCC_T1--2	chr15:65994348	T	NA	64	0	63	35.825	8.035	0	0	0	55	0	DENND4A	intronic	NA
RCC_T1--3	chr15:65994348	T	NA	37	0	37	37.162	6.427	0	0	0	36	0	DENND4A	intronic	NA
RCC_T1--4	chr15:65994348	T	C	66	0.197	53	36.849	7.695	13	38.692	2.250	49	13	DENND4A	intronic	NA
RCC_T1--5	chr15:65994348	T	NA	87	0	84	36.976	6.835	0	0	0	79	0	DENND4A	intronic	NA
RCC_T1--6	chr15:65994348	T	NA	81	0	81	33.259	10.087	0	0	0	70	0	DENND4A	intronic	NA
RCC_T1--7	chr15:65994348	T	NA	55	0	54	36.037	7.998	0	0	0	47	0	DENND4A	intronic	NA
RCC_T1--GL	chr15:65994348	T	NA	59	0	58	35.138	6.817	0	0	0	48	0	DENND4A	intronic	NA
RCC_T1--1	chr16:15690840	G	NA	25	0	25	37.960	7.635	0	0	0	24	0	KIAA0430	intronic	NA
RCC_T1--2	chr16:15690840	G	NA	82	0	82	37.866	5.094	0	0	0	79	0	KIAA0430	intronic	NA
RCC_T1--3	chr16:15690840	G	NA	41	0	41	38.171	4.685	0	0	0	38	0	KIAA0430	intronic	NA
RCC_T1--4	chr16:15690840	G	NA	59	0	59	38.983	2.209	0	0	0	58	0	KIAA0430	intronic	NA
RCC_T1--5	chr16:15690840	G	NA	90	0	90	36.389	9.587	0	0	0	81	0	KIAA0430	intronic	NA
RCC_T1--6	chr16:15690840	G	NA	71	0	71	34.620	10.653	0	0	0	60	0	KIAA0430	intronic	NA
RCC_T1--7	chr16:15690840	G	A	43	0.302	30	37.733	6.973	13	38.308	3.614	29	12	KIAA0430	intronic	NA
RCC_T1--GL	chr16:15690840	G	NA	65	0	65	37.554	5.429	0	0	0	60	0	KIAA0430	intronic	NA
RCC_T1--1	chr16:32001750	C	T	33	0.273	24	33.625	10.890	9	33.000	12.329	20	7	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--2	chr16:32001750	C	T	82	0.183	66	33.818	10.762	15	36.333	6.309	56	14	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--3	chr16:32001750	C	T	53	0.302	37	36.865	7.060	16	36.250	4.155	35	14	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--4	chr16:32001750	C	T	76	0.184	62	34.048	12.031	14	33.000	10.670	52	11	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--5	chr16:32001750	C	T	58	0.138	49	36.531	6.322	8	31.125	14.045	45	6	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--6	chr16:32001750	C	T	61	0.098	55	33.345	10.984	6	38.000	2.000	46	6	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--7	chr16:32001750	C	T	43	0.279	31	31.968	12.919	12	26.417	13.641	23	6	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--GL	chr16:32001750	C	NA	77	0	77	34.351	10.701	0	0	0	67	0	ZNF267(dist=73121),HERC2P4(dist=179614)	intergenic	NA
RCC_T1--1	chr16:46696831	C	T	16	0.188	13	39.615	0.961	3	40.000	0.000	13	3	VPS35	intronic	NA
RCC_T1--2	chr16:46696831	C	NA	41	0	39	37.410	6.298	0	0	0	36	0	VPS35	intronic	NA
RCC_T1--3	chr16:46696831	C	NA	24	0	24	39.167	2.078	0	0	0	24	0	VPS35	intronic	NA
RCC_T1--4	chr16:46696831	C	NA	41	0	41	38.756	2.818	0	0	0	40	0	VPS35	intronic	NA
RCC_T1--5	chr16:46696831	C	NA	48	0	48	38.875	2.247	0	0	0	47	0	VPS35	intronic	NA
RCC_T1--6	chr16:46696831	C	NA	73	0	73	34.712	10.053	0	0	0	63	0	VPS35	intronic	NA
RCC_T1--7	chr16:46696831	C	NA	41	0	41	38.244	3.323	0	0	0	40	0	VPS35	intronic	NA
RCC_T1--GL	chr16:46696831	C	NA	55	0	55	37.255	5.781	0	0	0	51	0	VPS35	intronic	NA
RCC_T1--1	chr16:68719066	C	G	15	0.067	14	36.929	6.944	1	37.000	0.000	13	1	CDH3	intronic	NA
RCC_T1--2	chr16:68719066	C	G	38	0.263	28	37.000	7.708	10	34.900	11.733	26	9	CDH3	intronic	NA
RCC_T1--3	chr16:68719066	C	G	19	0.158	16	38.438	3.759	3	38.667	1.155	15	3	CDH3	intronic	NA
RCC_T1--4	chr16:68719066	C	G	22	0.500	11	38.000	3.768	11	35.182	11.241	10	10	CDH3	intronic	NA
RCC_T1--5	chr16:68719066	C	G	32	0.156	27	37.889	4.886	5	35.800	4.919	25	4	CDH3	intronic	NA
RCC_T1--6	chr16:68719066	C	G	46	0.130	40	34.300	8.504	6	28.000	13.266	34	4	CDH3	intronic	NA
RCC_T1--7	chr16:68719066	C	G	23	0.174	19	39.789	0.419	4	35.000	5.944	19	3	CDH3	intronic	NA
RCC_T1--GL	chr16:68719066	C	NA	43	0	43	34.326	10.697	0	0	0	36	0	CDH3	intronic	NA
RCC_T1--1	chr16:69711062	A	C	49	0.061	46	39.174	1.730	3	40.000	0.000	46	3	NFAT5	intronic	NA
RCC_T1--2	chr16:69711062	A	C	147	0.259	109	37.147	7.698	38	36.079	10.336	101	35	NFAT5	intronic	NA
RCC_T1--3	chr16:69711062	A	C	65	0.185	53	37.811	7.419	12	39.917	0.289	51	12	NFAT5	intronic	NA
RCC_T1--4	chr16:69711062	A	C	79	0.354	51	38.118	5.833	28	39.464	1.621	48	28	NFAT5	intronic	NA
RCC_T1--5	chr16:69711062	A	C	104	0.202	83	38.518	3.419	21	38.714	3.797	82	20	NFAT5	intronic	NA
RCC_T1--6	chr16:69711062	A	C	90	0.089	82	37.268	5.664	8	32.000	13.406	76	6	NFAT5	intronic	NA
RCC_T1--7	chr16:69711062	A	C	61	0.164	51	38.412	3.293	10	39.700	0.483	47	10	NFAT5	intronic	NA
RCC_T1--GL	chr16:69711062	A	NA	129	0	128	37.867	4.984	0	0	0	120	0	NFAT5	intronic	NA
RCC_T1--1	chr16:74335551	G	A	40	0.200	32	37.219	7.334	8	34.375	13.179	30	7	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--2	chr16:74335551	G	A	144	0.132	125	38.096	4.019	19	37.263	5.536	118	16	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--3	chr16:74335551	G	A	58	0.259	43	39.047	2.430	15	38.467	4.207	42	14	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--4	chr16:74335551	G	NA	90	0	89	38.517	4.751	0	0	0	86	0	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--5	chr16:74335551	G	A	98	0.245	74	37.432	7.525	24	38.792	2.670	70	24	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--6	chr16:74335551	G	A	140	0.043	134	33.709	10.611	6	33.000	15.232	107	5	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--7	chr16:74335551	G	A	89	0.326	60	37.617	6.857	29	36.897	8.148	55	27	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--GL	chr16:74335551	G	NA	141	0	141	36.929	6.911	0	0	0	133	0	PSMD7(NM_002811:exon4:c.357+1G>A)	splicing	NA
RCC_T1--1	chr17:12913986	C	T	29	0.103	26	39.231	2.006	3	37.667	2.082	26	3	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--2	chr17:12913986	C	T	58	0.207	46	34.783	9.048	12	37.833	2.823	37	12	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--3	chr17:12913986	C	T	45	0.178	37	37.595	6.776	8	34.500	13.245	35	7	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--4	chr17:12913986	C	T	53	0.302	37	38.189	3.081	16	36.500	9.430	36	15	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--5	chr17:12913986	C	T	30	0.200	24	36.292	8.249	6	38.667	1.751	22	6	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--6	chr17:12913986	C	T	71	0.070	66	35.409	7.239	5	35.600	3.209	57	5	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--7	chr17:12913986	C	T	42	0.095	38	35.132	9.160	4	37.750	2.062	33	4	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr17:12913986	C	NA	51	0	49	35.592	7.882	0	0	0	44	0	ELAC2	exonic	nonsynonymous_SNV
RCC_T1--1	chr17:36002244	C	G	82	0.122	72	37.806	6.603	10	39.400	0.966	68	10	DDX52	exonic	nonsynonymous_SNV
RCC_T1--2	chr17:36002244	C	G	231	0.242	174	35.494	8.463	56	34.643	10.776	153	49	DDX52	exonic	nonsynonymous_SNV
RCC_T1--3	chr17:36002244	C	G	108	0.241	82	37.610	5.472	26	35.962	9.013	79	23	DDX52	exonic	nonsynonymous_SNV
RCC_T1--4	chr17:36002244	C	G	140	0.329	94	34.181	11.546	46	35.630	8.898	81	38	DDX52	exonic	nonsynonymous_SNV
RCC_T1--5	chr17:36002244	C	G	163	0.141	140	37.843	4.377	23	35.522	8.538	136	19	DDX52	exonic	nonsynonymous_SNV
RCC_T1--6	chr17:36002244	C	G	247	0.061	230	34.261	9.798	15	33.067	11.010	199	12	DDX52	exonic	nonsynonymous_SNV
RCC_T1--7	chr17:36002244	C	G	125	0.304	87	36.954	7.375	38	35.289	9.197	81	32	DDX52	exonic	nonsynonymous_SNV
RCC_T1--GL	chr17:36002244	C	NA	190	0	188	35.601	7.497	0	0	0	167	0	DDX52	exonic	nonsynonymous_SNV
RCC_T1--1	chr17:38556245	G	NA	82	0	82	39.061	2.526	0	0	0	79	0	TOP2A	exonic	synonymous_SNV
RCC_T1--2	chr17:38556245	G	NA	293	0	293	37.771	6.023	0	0	0	277	0	TOP2A	exonic	synonymous_SNV
RCC_T1--3	chr17:38556245	G	NA	115	0	115	39.043	4.057	0	0	0	113	0	TOP2A	exonic	synonymous_SNV
RCC_T1--4	chr17:38556245	G	NA	153	0	152	38.336	5.239	0	0	0	147	0	TOP2A	exonic	synonymous_SNV
RCC_T1--5	chr17:38556245	G	NA	185	0	185	37.703	6.808	0	0	0	174	0	TOP2A	exonic	synonymous_SNV
RCC_T1--6	chr17:38556245	G	NA	269	0	269	36.680	7.347	0	0	0	247	0	TOP2A	exonic	synonymous_SNV
RCC_T1--7	chr17:38556245	G	C	121	0.240	92	37.196	8.277	29	38.793	2.920	86	28	TOP2A	exonic	synonymous_SNV
RCC_T1--GL	chr17:38556245	G	NA	201	0	199	37.648	5.780	0	0	0	186	0	TOP2A	exonic	synonymous_SNV
RCC_T1--1	chr17:42442548	A	NA	14	0	14	35.714	9.988	0	0	0	13	0	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--2	chr17:42442548	A	G	52	0.192	42	35.619	8.944	10	39.300	1.567	37	10	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--3	chr17:42442548	A	G	32	0.188	26	38.192	2.857	6	38.333	1.862	26	6	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--4	chr17:42442548	A	G	35	0.371	22	35.773	7.934	13	37.923	2.216	21	13	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--5	chr17:42442548	A	G	50	0.220	39	36.846	4.004	11	38.182	2.601	37	11	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--6	chr17:42442548	A	G	85	0.047	80	32.462	10.650	4	32.000	9.201	67	3	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--7	chr17:42442548	A	G	26	0.385	16	33.625	12.601	10	37.700	3.368	14	10	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--GL	chr17:42442548	A	NA	53	0	53	34.811	6.581	0	0	0	45	0	FAM171A2(dist=1313),ITGA2B(dist=7002)	intergenic	NA
RCC_T1--1	chr17:45380104	G	T	16	0.188	13	39.846	0.376	3	39.667	0.577	13	3	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--2	chr17:45380104	G	T	75	0.307	52	36.288	9.310	23	35.435	8.943	47	20	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--3	chr17:45380104	G	T	38	0.289	27	37.778	7.392	11	39.818	0.405	26	11	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--4	chr17:45380104	G	T	57	0.018	56	38.696	2.954	1	39.000	0.000	54	1	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--5	chr17:45380104	G	T	51	0.392	31	35.903	9.985	20	36.800	8.427	28	19	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--6	chr17:45380104	G	T	83	0.133	72	35.792	8.105	11	34.182	11.418	64	9	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--7	chr17:45380104	G	NA	35	0	35	37.057	7.174	0	0	0	31	0	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr17:45380104	G	NA	61	0	61	37.279	5.911	0	0	0	57	0	ITGB3	exonic	nonsynonymous_SNV
RCC_T1--1	chr17:48216888	T	A	81	0.160	68	34.309	7.762	13	28.846	12.960	57	10	PPP1R9B	exonic	unknown
RCC_T1--2	chr17:48216888	T	A	174	0.236	131	32.458	9.932	41	31.463	10.701	104	32	PPP1R9B	exonic	unknown
RCC_T1--3	chr17:48216888	T	A	110	0.236	83	34.337	6.171	26	33.577	8.732	72	22	PPP1R9B	exonic	unknown
RCC_T1--4	chr17:48216888	T	A	140	0.293	97	29.536	13.313	41	32.024	11.069	71	32	PPP1R9B	exonic	unknown
RCC_T1--5	chr17:48216888	T	A	157	0.146	133	32.519	9.903	23	34.478	6.694	107	18	PPP1R9B	exonic	unknown
RCC_T1--6	chr17:48216888	T	NA	144	0	127	27.622	12.148	0	0	0	77	0	PPP1R9B	exonic	unknown
RCC_T1--7	chr17:48216888	T	A	146	0.281	105	33.724	8.327	41	33.976	7.538	91	34	PPP1R9B	exonic	unknown
RCC_T1--GL	chr17:48216888	T	NA	184	0	179	29.760	11.103	0	0	0	120	0	PPP1R9B	exonic	unknown
RCC_T1--1	chr1:75072347	G	NA	100	0	100	37.930	4.120	0	0	0	97	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--2	chr1:75072347	G	NA	320	0	319	37.724	5.396	0	0	0	305	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--3	chr1:75072347	G	NA	133	0	133	37.519	5.403	0	0	0	127	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--4	chr1:75072347	G	NA	241	0	241	36.967	7.053	0	0	0	225	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--5	chr1:75072347	G	NA	248	0	248	37.540	6.292	0	0	0	236	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--6	chr1:75072347	G	NA	338	0	338	34.411	8.461	0	0	0	288	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--7	chr1:75072347	G	C	194	0.309	134	37.619	5.904	60	37.067	6.540	129	53	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--GL	chr1:75072347	G	NA	273	0	271	34.738	8.043	0	0	0	235	0	C1orf173	exonic	nonsynonymous_SNV
RCC_T1--1	chr17:7726691	A	G	37	0.081	34	31.882	10.516	3	29.667	5.508	27	2	DNAH2	intronic	NA
RCC_T1--2	chr17:7726691	A	G	51	0.216	40	28.125	13.497	11	28.636	13.411	23	9	DNAH2	intronic	NA
RCC_T1--3	chr17:7726691	A	NA	29	0	28	29.964	11.924	0	0	0	21	0	DNAH2	intronic	NA
RCC_T1--4	chr17:7726691	A	NA	56	0	53	31.302	9.498	0	0	0	37	0	DNAH2	intronic	NA
RCC_T1--5	chr17:7726691	A	NA	56	0	52	30.096	11.383	0	0	0	36	0	DNAH2	intronic	NA
RCC_T1--6	chr17:7726691	A	NA	62	0	61	28.098	13.487	0	0	0	38	0	DNAH2	intronic	NA
RCC_T1--7	chr17:7726691	A	NA	41	0	40	33.350	8.660	0	0	0	32	0	DNAH2	intronic	NA
RCC_T1--GL	chr17:7726691	A	NA	78	0	75	28.360	12.229	0	0	0	44	0	DNAH2	intronic	NA
RCC_T1--1	chr17:78410073	A	G	21	0.143	18	36.056	8.875	3	35.333	5.686	17	2	ENDOV	UTR3	NA
RCC_T1--2	chr17:78410073	A	NA	44	0	41	30.463	12.588	0	0	0	29	0	ENDOV	UTR3	NA
RCC_T1--3	chr17:78410073	A	G	22	0.091	20	30.700	13.203	2	35.500	0.707	16	2	ENDOV	UTR3	NA
RCC_T1--4	chr17:78410073	A	G	36	0.306	25	35.280	8.677	11	30.455	11.308	20	9	ENDOV	UTR3	NA
RCC_T1--5	chr17:78410073	A	G	28	0.143	23	36.870	3.709	4	32.000	10.863	22	3	ENDOV	UTR3	NA
RCC_T1--6	chr17:78410073	A	G	55	0.036	52	28.692	11.432	2	29.000	14.142	31	1	ENDOV	UTR3	NA
RCC_T1--7	chr17:78410073	A	NA	44	0	43	34.535	10.199	0	0	0	36	0	ENDOV	UTR3	NA
RCC_T1--GL	chr17:78410073	A	NA	39	0	36	32.750	10.835	0	0	0	30	0	ENDOV	UTR3	NA
RCC_T1--1	chr17:80574284	G	A	24	0.167	20	38.200	2.505	4	29.750	18.518	20	3	WDR45B	intronic	NA
RCC_T1--2	chr17:80574284	G	A	67	0.299	47	34.511	7.991	20	36.950	3.154	40	19	WDR45B	intronic	NA
RCC_T1--3	chr17:80574284	G	A	50	0.120	44	35.341	9.669	6	37.167	2.317	40	6	WDR45B	intronic	NA
RCC_T1--4	chr17:80574284	G	NA	42	0	41	34.439	10.033	0	0	0	37	0	WDR45B	intronic	NA
RCC_T1--5	chr17:80574284	G	NA	72	0	72	34.903	7.905	0	0	0	63	0	WDR45B	intronic	NA
RCC_T1--6	chr17:80574284	G	NA	45	0	45	31.600	11.769	0	0	0	33	0	WDR45B	intronic	NA
RCC_T1--7	chr17:80574284	G	NA	55	0	55	36.782	7.312	0	0	0	52	0	WDR45B	intronic	NA
RCC_T1--GL	chr17:80574284	G	NA	44	0	43	33.116	9.427	0	0	0	39	0	WDR45B	intronic	NA
RCC_T1--1	chr18:14106244	T	C	45	0.111	40	38.500	4.206	5	37.600	2.302	39	5	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--2	chr18:14106244	T	C	109	0.239	83	36.361	6.943	26	33.846	12.171	72	22	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--3	chr18:14106244	T	C	62	0.210	49	38.204	5.744	13	38.000	1.915	48	13	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--4	chr18:14106244	T	C	102	0.294	72	38.125	5.197	30	37.100	7.107	69	29	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--5	chr18:14106244	T	C	75	0.333	50	37.760	6.209	25	38.240	3.099	47	24	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--6	chr18:14106244	T	C	129	0.093	116	34.052	10.563	12	34.083	10.647	95	10	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--7	chr18:14106244	T	C	67	0.463	35	37.943	5.291	31	36.645	9.354	33	29	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--GL	chr18:14106244	T	NA	135	0	135	36.970	6.240	0	0	0	127	0	ZNF519	exonic	nonsynonymous_SNV
RCC_T1--1	chr18:21333738	C	NA	12	0	12	37.500	5.368	0	0	0	11	0	LAMA3	exonic	synonymous_SNV
RCC_T1--2	chr18:21333738	C	A	44	0.136	38	34.684	10.740	6	38.667	1.862	32	6	LAMA3	exonic	synonymous_SNV
RCC_T1--3	chr18:21333738	C	NA	20	0	20	37.550	8.420	0	0	0	19	0	LAMA3	exonic	synonymous_SNV
RCC_T1--4	chr18:21333738	C	NA	43	0	43	36.279	9.153	0	0	0	40	0	LAMA3	exonic	synonymous_SNV
RCC_T1--5	chr18:21333738	C	NA	37	0	37	37.270	6.991	0	0	0	35	0	LAMA3	exonic	synonymous_SNV
RCC_T1--6	chr18:21333738	C	NA	48	0	48	34.729	9.593	0	0	0	41	0	LAMA3	exonic	synonymous_SNV
RCC_T1--7	chr18:21333738	C	NA	35	0	35	37.314	6.825	0	0	0	34	0	LAMA3	exonic	synonymous_SNV
RCC_T1--GL	chr18:21333738	C	NA	44	0	44	37.727	3.533	0	0	0	41	0	LAMA3	exonic	synonymous_SNV
RCC_T1--1	chr18:21533020	T	NA	63	0	63	36.206	4.289	0	0	0	60	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--2	chr18:21533020	T	NA	122	0	122	32.730	8.746	0	0	0	90	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--3	chr18:21533020	T	NA	67	0	67	34.254	8.387	0	0	0	56	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--4	chr18:21533020	T	C	114	0.202	91	33.681	8.772	23	37.435	4.591	74	21	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--5	chr18:21533020	T	NA	103	0	103	34.621	8.085	0	0	0	83	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--6	chr18:21533020	T	NA	149	0	148	29.770	10.828	0	0	0	98	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--7	chr18:21533020	T	NA	64	0	63	33.492	8.797	0	0	0	51	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr18:21533020	T	NA	149	0	149	32.060	8.913	0	0	0	109	0	LAMA3	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:17777375	G	T	18	0.222	14	39.357	1.151	4	40.000	0.000	14	4	UNC13A	intronic	NA
RCC_T1--2	chr19:17777375	G	NA	54	0	54	37.870	5.474	0	0	0	53	0	UNC13A	intronic	NA
RCC_T1--3	chr19:17777375	G	NA	23	0	23	37.478	6.186	0	0	0	21	0	UNC13A	intronic	NA
RCC_T1--4	chr19:17777375	G	NA	40	0	40	37.525	6.544	0	0	0	37	0	UNC13A	intronic	NA
RCC_T1--5	chr19:17777375	G	NA	44	0	44	38.273	2.139	0	0	0	44	0	UNC13A	intronic	NA
RCC_T1--6	chr19:17777375	G	NA	36	0	36	35.444	9.416	0	0	0	32	0	UNC13A	intronic	NA
RCC_T1--7	chr19:17777375	G	NA	17	0	17	35.353	9.559	0	0	0	14	0	UNC13A	intronic	NA
RCC_T1--GL	chr19:17777375	G	NA	37	0	37	36.108	8.784	0	0	0	33	0	UNC13A	intronic	NA
RCC_T1--1	chr19:19035036	C	NA	31	0	31	37.645	3.545	0	0	0	30	0	DDX49	intronic	NA
RCC_T1--2	chr19:19035036	C	NA	52	0	52	35.500	9.085	0	0	0	46	0	DDX49	intronic	NA
RCC_T1--3	chr19:19035036	C	NA	35	0	34	36.676	4.591	0	0	0	32	0	DDX49	intronic	NA
RCC_T1--4	chr19:19035036	C	T	45	0.156	38	34.289	9.357	7	37.000	3.162	32	7	DDX49	intronic	NA
RCC_T1--5	chr19:19035036	C	NA	41	0	41	36.829	6.511	0	0	0	38	0	DDX49	intronic	NA
RCC_T1--6	chr19:19035036	C	NA	54	0	54	34.593	8.553	0	0	0	48	0	DDX49	intronic	NA
RCC_T1--7	chr19:19035036	C	NA	43	0	43	36.279	7.166	0	0	0	39	0	DDX49	intronic	NA
RCC_T1--GL	chr19:19035036	C	NA	51	0	51	34.314	9.595	0	0	0	44	0	DDX49	intronic	NA
RCC_T1--1	chr19:21606235	T	G	35	0.057	33	38.727	2.541	2	37.500	3.536	32	2	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:21606235	T	G	129	0.163	107	37.850	5.552	21	37.381	8.225	100	20	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:21606235	T	G	44	0.159	37	38.595	3.476	7	39.143	1.574	35	7	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:21606235	T	NA	77	0	77	38.636	3.832	0	0	0	75	0	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:21606235	T	NA	103	0	103	39.184	1.564	0	0	0	103	0	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:21606235	T	NA	111	0	110	36.618	6.330	0	0	0	98	0	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:21606235	T	NA	88	0	88	37.023	7.113	0	0	0	80	0	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:21606235	T	NA	99	0	98	37.316	6.467	0	0	0	89	0	ZNF493	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:37427851	C	NA	26	0	26	39.154	1.848	0	0	0	26	0	ZNF568	intronic	NA
RCC_T1--2	chr19:37427851	C	NA	56	0	55	36.782	7.500	0	0	0	52	0	ZNF568	intronic	NA
RCC_T1--3	chr19:37427851	C	NA	32	0	32	35.812	10.114	0	0	0	29	0	ZNF568	intronic	NA
RCC_T1--4	chr19:37427851	C	T	47	0.191	38	36.947	7.337	9	38.333	2.915	35	9	ZNF568	intronic	NA
RCC_T1--5	chr19:37427851	C	NA	59	0	59	35.695	8.979	0	0	0	51	0	ZNF568	intronic	NA
RCC_T1--6	chr19:37427851	C	NA	65	0	65	34.415	9.587	0	0	0	56	0	ZNF568	intronic	NA
RCC_T1--7	chr19:37427851	C	NA	51	0	51	38.000	3.821	0	0	0	48	0	ZNF568	intronic	NA
RCC_T1--GL	chr19:37427851	C	NA	48	0	47	35.617	9.929	0	0	0	42	0	ZNF568	intronic	NA
RCC_T1--1	chr19:40581872	G	A	51	0.039	49	38.286	2.708	2	38.500	2.121	49	2	ZNF780A	exonic	synonymous_SNV
RCC_T1--2	chr19:40581872	G	A	173	0.225	134	37.134	8.076	39	37.410	4.363	125	36	ZNF780A	exonic	synonymous_SNV
RCC_T1--3	chr19:40581872	G	A	91	0.143	78	38.744	2.747	13	38.538	2.817	76	13	ZNF780A	exonic	synonymous_SNV
RCC_T1--4	chr19:40581872	G	A	137	0.131	119	36.655	7.823	18	39.167	1.654	109	18	ZNF780A	exonic	synonymous_SNV
RCC_T1--5	chr19:40581872	G	A	159	0.208	126	38.183	4.451	33	38.152	3.242	120	31	ZNF780A	exonic	synonymous_SNV
RCC_T1--6	chr19:40581872	G	A	180	0.050	171	35.556	8.094	9	38.000	4.555	154	8	ZNF780A	exonic	synonymous_SNV
RCC_T1--7	chr19:40581872	G	A	132	0.273	94	37.319	7.297	36	39.111	1.864	88	36	ZNF780A	exonic	synonymous_SNV
RCC_T1--GL	chr19:40581872	G	NA	167	0	167	36.228	7.233	0	0	0	153	0	ZNF780A	exonic	synonymous_SNV
RCC_T1--1	chr19:40581873	C	T	52	0.038	50	38.080	5.834	2	39.500	0.707	47	2	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:40581873	C	T	171	0.222	132	37.470	7.205	38	37.474	4.397	124	34	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:40581873	C	T	90	0.144	77	38.870	2.778	13	38.231	3.492	75	12	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:40581873	C	T	137	0.124	120	37.025	7.635	17	38.882	2.826	111	16	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:40581873	C	T	158	0.209	125	38.160	5.248	33	37.424	3.825	117	30	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:40581873	C	T	180	0.044	172	35.012	7.968	8	39.875	0.354	149	8	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:40581873	C	T	126	0.262	93	36.366	8.665	33	39.485	0.795	82	33	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:40581873	C	NA	165	0	164	36.555	7.277	0	0	0	152	0	ZNF780A	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:42221267	G	T	21	0.190	17	38.529	5.051	4	39.500	1.000	16	4	CEACAM5	intronic	NA
RCC_T1--2	chr19:42221267	G	NA	72	0	72	37.597	6.154	0	0	0	68	0	CEACAM5	intronic	NA
RCC_T1--3	chr19:42221267	G	NA	31	0	30	38.733	3.216	0	0	0	29	0	CEACAM5	intronic	NA
RCC_T1--4	chr19:42221267	G	NA	68	0	68	38.000	6.538	0	0	0	66	0	CEACAM5	intronic	NA
RCC_T1--5	chr19:42221267	G	NA	76	0	76	37.645	5.675	0	0	0	72	0	CEACAM5	intronic	NA
RCC_T1--6	chr19:42221267	G	NA	71	0	70	34.200	8.416	0	0	0	59	0	CEACAM5	intronic	NA
RCC_T1--7	chr19:42221267	G	NA	51	0	51	37.902	4.173	0	0	0	48	0	CEACAM5	intronic	NA
RCC_T1--GL	chr19:42221267	G	NA	74	0	73	36.082	7.092	0	0	0	67	0	CEACAM5	intronic	NA
RCC_T1--1	chr19:51412045	C	T	19	0.105	17	36.882	2.998	2	36.000	4.243	17	2	KLK4	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:51412045	C	T	30	0.233	23	34.652	8.332	7	39.714	0.756	20	7	KLK4	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:51412045	C	T	31	0.129	27	36.963	3.380	4	33.000	8.367	27	3	KLK4	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:51412045	C	T	58	0.379	36	32.639	10.057	22	32.727	12.123	28	17	KLK4	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:51412045	C	T	34	0.441	19	36.474	8.682	15	31.600	12.911	18	12	KLK4	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:51412045	C	T	55	0.055	52	34.654	5.444	3	26.000	20.785	45	2	KLK4	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:51412045	C	T	25	0.280	17	31.588	12.550	7	35.714	4.957	14	6	KLK4	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:51412045	C	NA	46	0	45	31.422	9.609	0	0	0	32	0	KLK4	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:52550072	G	A	20	0.050	19	39.632	0.955	1	39.000	0.000	19	1	ZNF432	intronic	NA
RCC_T1--2	chr19:52550072	G	A	79	0.203	63	38.397	5.145	16	38.062	3.255	62	16	ZNF432	intronic	NA
RCC_T1--3	chr19:52550072	G	A	42	0.190	34	37.088	7.304	8	38.125	2.416	32	8	ZNF432	intronic	NA
RCC_T1--4	chr19:52550072	G	A	48	0.271	35	38.771	3.282	13	36.462	4.156	34	12	ZNF432	intronic	NA
RCC_T1--5	chr19:52550072	G	A	54	0.278	39	37.615	6.616	15	39.333	0.976	37	15	ZNF432	intronic	NA
RCC_T1--6	chr19:52550072	G	A	60	0.067	56	34.696	9.504	4	39.250	0.957	46	4	ZNF432	intronic	NA
RCC_T1--7	chr19:52550072	G	A	40	0.200	32	36.969	7.333	8	39.000	2.449	30	8	ZNF432	intronic	NA
RCC_T1--GL	chr19:52550072	G	NA	47	0	47	36.532	7.226	0	0	0	43	0	ZNF432	intronic	NA
RCC_T1--1	chr19:54250399	G	NA	37	0	33	26.242	17.521	0	0	0	22	0	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--2	chr19:54250399	G	T	79	0.190	64	29.328	15.157	15	31.800	15.451	45	12	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--3	chr19:54250399	G	NA	51	0	39	28.333	16.864	0	0	0	28	0	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--4	chr19:54250399	G	T	56	0.321	38	23.947	17.330	18	34.000	12.068	22	16	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--5	chr19:54250399	G	T	70	0.186	57	29.579	16.032	13	28.538	15.463	42	9	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--6	chr19:54250399	G	T	92	0.065	86	28.895	16.034	6	31.000	14.751	63	5	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--7	chr19:54250399	G	NA	38	0	32	23.781	18.361	0	0	0	19	0	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--GL	chr19:54250399	G	NA	81	0	80	28.250	16.184	0	0	0	56	0	MIR520H(dist=4546),MIR521-1(dist=1491)	intergenic	NA
RCC_T1--1	chr19:54773012	G	A	11	0.273	8	39.750	0.463	3	40.000	0.000	8	3	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--2	chr19:54773012	G	NA	50	0	50	37.220	7.807	0	0	0	47	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--3	chr19:54773012	G	NA	15	0	15	39.867	0.352	0	0	0	15	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--4	chr19:54773012	G	NA	37	0	37	37.459	7.585	0	0	0	34	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--5	chr19:54773012	G	NA	24	0	24	38.625	2.039	0	0	0	24	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--6	chr19:54773012	G	NA	62	0	62	37.032	7.382	0	0	0	58	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--7	chr19:54773012	G	NA	26	0	26	37.423	7.961	0	0	0	24	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--GL	chr19:54773012	G	NA	40	0	40	38.025	6.310	0	0	0	38	0	LILRB5(dist=11845),LILRB2(dist=4663)	intergenic	NA
RCC_T1--1	chr19:55451315	A	C	24	0.125	20	34.800	6.321	3	38.667	2.309	18	3	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:55451315	A	C	46	0.217	36	31.472	10.657	10	35.800	6.630	27	9	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:55451315	A	C	28	0.286	20	28.900	14.209	8	37.625	3.378	14	8	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:55451315	A	C	54	0.352	35	35.314	7.360	19	36.684	5.323	31	17	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:55451315	A	C	46	0.196	37	34.108	9.312	9	37.333	1.803	30	9	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:55451315	A	C	46	0.087	42	30.310	10.871	4	37.750	3.304	29	4	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:55451315	A	C	26	0.385	16	36.625	4.500	10	35.700	5.697	14	8	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:55451315	A	NA	49	0	48	33.729	8.023	0	0	0	39	0	NLRP7	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:57640603	A	NA	49	0	49	38.755	2.750	0	0	0	48	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:57640603	A	NA	165	0	165	37.430	6.500	0	0	0	155	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:57640603	A	NA	85	0	85	37.988	5.147	0	0	0	82	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:57640603	A	G	129	0.132	112	37.893	5.450	17	37.471	9.159	104	16	USP29	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:57640603	A	NA	126	0	126	37.421	7.714	0	0	0	117	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:57640603	A	NA	179	0	179	35.196	8.709	0	0	0	157	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:57640603	A	NA	102	0	102	38.510	3.007	0	0	0	98	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:57640603	A	NA	186	0	186	36.785	7.140	0	0	0	172	0	USP29	exonic	nonsynonymous_SNV
RCC_T1--1	chr19:6713210	G	NA	13	0	13	37.462	4.666	0	0	0	12	0	C3	exonic	nonsynonymous_SNV
RCC_T1--2	chr19:6713210	G	NA	44	0	44	34.886	10.047	0	0	0	38	0	C3	exonic	nonsynonymous_SNV
RCC_T1--3	chr19:6713210	G	NA	28	0	28	38.500	2.687	0	0	0	27	0	C3	exonic	nonsynonymous_SNV
RCC_T1--4	chr19:6713210	G	NA	44	0	44	35.727	9.928	0	0	0	39	0	C3	exonic	nonsynonymous_SNV
RCC_T1--5	chr19:6713210	G	NA	49	0	49	35.327	8.444	0	0	0	43	0	C3	exonic	nonsynonymous_SNV
RCC_T1--6	chr19:6713210	G	NA	45	0	45	32.489	10.947	0	0	0	35	0	C3	exonic	nonsynonymous_SNV
RCC_T1--7	chr19:6713210	G	C	34	0.206	27	37.185	7.565	7	37.857	3.185	25	7	C3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr19:6713210	G	NA	57	0	56	33.429	9.925	0	0	0	47	0	C3	exonic	nonsynonymous_SNV
RCC_T1--1	chr20:10367906	C	NA	52	0	52	38.519	5.425	0	0	0	51	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--2	chr20:10367906	C	NA	124	0	124	37.702	5.694	0	0	0	119	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--3	chr20:10367906	C	NA	82	0	82	38.634	4.686	0	0	0	79	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--4	chr20:10367906	C	NA	89	0	89	38.674	3.197	0	0	0	85	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--5	chr20:10367906	C	NA	108	0	108	38.102	5.627	0	0	0	103	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--6	chr20:10367906	C	NA	135	0	135	33.630	10.517	0	0	0	113	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--7	chr20:10367906	C	G	87	0.207	69	37.029	7.982	18	36.667	9.229	65	16	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--GL	chr20:10367906	C	NA	128	0	128	35.859	7.983	0	0	0	113	0	SNAP25(dist=79840),MKKS(dist=17522)	intergenic	NA
RCC_T1--1	chr20:37054066	A	C	26	0.115	22	38.864	1.642	3	39.333	0.577	22	3	SNHG17	ncRNA_intronic	NA
RCC_T1--2	chr20:37054066	A	C	49	0.245	37	37.000	4.391	12	35.750	9.026	35	11	SNHG17	ncRNA_intronic	NA
RCC_T1--3	chr20:37054066	A	C	35	0.257	26	37.077	8.015	9	39.778	0.441	24	9	SNHG17	ncRNA_intronic	NA
RCC_T1--4	chr20:37054066	A	NA	45	0	45	35.756	8.592	0	0	0	39	0	SNHG17	ncRNA_intronic	NA
RCC_T1--5	chr20:37054066	A	NA	51	0	51	37.490	7.055	0	0	0	48	0	SNHG17	ncRNA_intronic	NA
RCC_T1--6	chr20:37054066	A	NA	42	0	42	32.833	11.728	0	0	0	33	0	SNHG17	ncRNA_intronic	NA
RCC_T1--7	chr20:37054066	A	NA	30	0	30	37.433	6.991	0	0	0	29	0	SNHG17	ncRNA_intronic	NA
RCC_T1--GL	chr20:37054066	A	NA	65	0	65	35.462	7.880	0	0	0	55	0	SNHG17	ncRNA_intronic	NA
RCC_T1--1	chr20:40714388	G	A	27	0.222	21	30.381	14.521	6	39.667	0.516	16	6	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--2	chr20:40714388	G	A	60	0.233	46	35.457	8.513	14	33.714	10.680	42	12	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--3	chr20:40714388	G	A	36	0.167	30	36.267	8.128	6	36.667	5.428	27	5	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--4	chr20:40714388	G	NA	75	0	75	35.760	9.625	0	0	0	67	0	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--5	chr20:40714388	G	A	93	0.237	71	34.338	10.498	22	35.545	10.984	61	20	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--6	chr20:40714388	G	A	49	0.041	46	31.283	13.022	2	38.000	1.414	37	2	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--7	chr20:40714388	G	A	62	0.194	49	35.265	9.358	12	33.417	10.672	45	10	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--GL	chr20:40714388	G	NA	85	0	84	30.595	14.516	0	0	0	64	0	PTPRT	exonic	nonsynonymous_SNV
RCC_T1--1	chr20:44333332	T	NA	21	0	21	38.048	3.457	0	0	0	21	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--2	chr20:44333332	T	NA	52	0	52	34.096	12.121	0	0	0	45	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--3	chr20:44333332	T	NA	36	0	36	36.556	8.794	0	0	0	34	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--4	chr20:44333332	T	NA	52	0	52	37.019	7.424	0	0	0	50	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--5	chr20:44333332	T	C	74	0.162	62	37.548	5.662	12	39.083	1.165	60	12	WFDC10B,WFDC13	intronic	NA
RCC_T1--6	chr20:44333332	T	NA	49	0	49	31.531	12.128	0	0	0	36	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--7	chr20:44333332	T	NA	35	0	35	37.314	6.707	0	0	0	33	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--GL	chr20:44333332	T	NA	55	0	55	36.382	7.276	0	0	0	53	0	WFDC10B,WFDC13	intronic	NA
RCC_T1--1	chr2:120194652	C	G	31	0.194	25	35.160	7.925	6	38.500	3.674	21	6	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--2	chr2:120194652	C	G	36	0.028	35	28.114	14.237	1	40.000	0.000	23	1	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--3	chr2:120194652	C	G	24	0.083	22	31.773	13.248	2	23.500	7.778	17	0	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--4	chr2:120194652	C	G	30	0.067	28	35.429	9.773	2	34.500	6.364	26	2	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--5	chr2:120194652	C	G	24	0.083	22	37.591	4.284	2	40.000	0.000	19	2	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--6	chr2:120194652	C	G	25	0.040	24	28.625	12.843	1	40.000	0.000	17	1	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--7	chr2:120194652	C	NA	27	0	27	36.296	7.498	0	0	0	25	0	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--GL	chr2:120194652	C	NA	42	0	41	35.585	6.511	0	0	0	38	0	TMEM37	exonic	nonsynonymous_SNV
RCC_T1--1	chr2:128346000	C	T	15	0.333	10	39.100	1.101	5	38.000	3.391	10	5	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--2	chr2:128346000	C	T	39	0.308	27	34.963	10.420	12	38.333	2.995	23	12	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--3	chr2:128346000	C	T	28	0.214	22	38.318	2.679	6	35.667	5.125	22	5	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--4	chr2:128346000	C	NA	39	0	39	35.359	7.866	0	0	0	35	0	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--5	chr2:128346000	C	NA	48	0	48	35.729	8.472	0	0	0	42	0	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--6	chr2:128346000	C	NA	52	0	52	31.115	12.069	0	0	0	38	0	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--7	chr2:128346000	C	NA	30	0	30	31.833	13.339	0	0	0	23	0	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--GL	chr2:128346000	C	NA	41	0	41	34.780	7.828	0	0	0	34	0	MYO7B	exonic	nonsynonymous_SNV
RCC_T1--1	chr2:128753853	T	A	30	0.100	27	38.926	2.111	3	38.667	2.309	27	3	SAP130	intronic	NA
RCC_T1--2	chr2:128753853	T	A	80	0.175	66	37.924	5.472	14	37.357	4.378	64	13	SAP130	intronic	NA
RCC_T1--3	chr2:128753853	T	A	34	0.147	29	38.931	4.053	5	40.000	0.000	28	5	SAP130	intronic	NA
RCC_T1--4	chr2:128753853	T	NA	40	0	40	39.375	2.192	0	0	0	39	0	SAP130	intronic	NA
RCC_T1--5	chr2:128753853	T	NA	64	0	64	37.312	6.505	0	0	0	57	0	SAP130	intronic	NA
RCC_T1--6	chr2:128753853	T	A	59	0.017	58	36.362	5.940	1	40.000	0.000	53	1	SAP130	intronic	NA
RCC_T1--7	chr2:128753853	T	NA	41	0	41	38.707	5.938	0	0	0	40	0	SAP130	intronic	NA
RCC_T1--GL	chr2:128753853	T	NA	52	0	52	37.115	5.294	0	0	0	46	0	SAP130	intronic	NA
RCC_T1--1	chr21:34717554	G	NA	91	0	91	38.352	5.115	0	0	0	87	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--2	chr21:34717554	G	NA	318	0	318	37.264	6.077	0	0	0	298	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--3	chr21:34717554	G	NA	142	0	142	37.331	6.535	0	0	0	132	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--4	chr21:34717554	G	NA	181	0	181	37.370	6.976	0	0	0	172	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--5	chr21:34717554	G	NA	179	0	179	37.285	6.977	0	0	0	169	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--6	chr21:34717554	G	NA	229	0	228	35.382	7.783	0	0	0	198	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--7	chr21:34717554	G	A	161	0.242	122	37.689	6.510	39	36.385	7.879	115	35	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr21:34717554	G	NA	216	0	215	35.451	8.011	0	0	0	189	0	IFNAR1	exonic	nonsynonymous_SNV
RCC_T1--1	chr21:43697129	G	NA	15	0	14	39.357	1.151	0	0	0	14	0	ABCG1	intronic	NA
RCC_T1--2	chr21:43697129	G	A	29	0.276	21	38.095	3.015	8	37.500	4.536	21	7	ABCG1	intronic	NA
RCC_T1--3	chr21:43697129	G	A	29	0.172	24	37.625	4.670	5	39.800	0.447	22	5	ABCG1	intronic	NA
RCC_T1--4	chr21:43697129	G	A	35	0.314	23	37.565	3.628	11	38.182	2.676	22	11	ABCG1	intronic	NA
RCC_T1--5	chr21:43697129	G	A	29	0.138	25	37.080	5.901	4	39.750	0.500	24	4	ABCG1	intronic	NA
RCC_T1--6	chr21:43697129	G	A	31	0.129	27	34.074	11.080	4	38.500	3.000	22	4	ABCG1	intronic	NA
RCC_T1--7	chr21:43697129	G	A	45	0.133	39	39.103	1.930	6	38.667	1.751	39	6	ABCG1	intronic	NA
RCC_T1--GL	chr21:43697129	G	NA	39	0	39	37.564	6.189	0	0	0	38	0	ABCG1	intronic	NA
RCC_T1--1	chr2:159526239	C	T	39	0.051	36	38.417	2.359	2	38.000	0.000	36	2	PKP4	exonic	synonymous_SNV
RCC_T1--2	chr2:159526239	C	T	53	0.358	34	36.206	7.189	19	29.000	15.301	32	13	PKP4	exonic	synonymous_SNV
RCC_T1--3	chr2:159526239	C	T	37	0.162	31	36.194	9.435	6	29.000	13.579	29	5	PKP4	exonic	synonymous_SNV
RCC_T1--4	chr2:159526239	C	NA	44	0	44	33.795	10.613	0	0	0	36	0	PKP4	exonic	synonymous_SNV
RCC_T1--5	chr2:159526239	C	T	67	0.269	49	37.347	6.064	18	36.667	8.725	46	17	PKP4	exonic	synonymous_SNV
RCC_T1--6	chr2:159526239	C	T	64	0.078	58	31.534	13.145	5	24.600	13.202	48	2	PKP4	exonic	synonymous_SNV
RCC_T1--7	chr2:159526239	C	T	52	0.308	36	37.250	7.165	16	33.625	10.288	33	12	PKP4	exonic	synonymous_SNV
RCC_T1--GL	chr2:159526239	C	NA	71	0	71	34.099	9.757	0	0	0	60	0	PKP4	exonic	synonymous_SNV
RCC_T1--1	chr2:168106678	T	NA	75	0	75	38.120	5.367	0	0	0	70	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--2	chr2:168106678	T	NA	202	0	201	36.095	7.818	0	0	0	181	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--3	chr2:168106678	T	NA	116	0	116	38.129	5.678	0	0	0	111	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--4	chr2:168106678	T	C	161	0.161	135	37.304	7.601	26	39.385	0.898	127	26	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--5	chr2:168106678	T	NA	211	0	211	37.109	7.143	0	0	0	194	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--6	chr2:168106678	T	NA	252	0	251	34.765	8.866	0	0	0	217	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--7	chr2:168106678	T	NA	135	0	134	37.127	6.357	0	0	0	124	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr2:168106678	T	NA	183	0	183	36.251	8.148	0	0	0	164	0	XIRP2	exonic	nonsynonymous_SNV
RCC_T1--1	chr2:176959300	G	A	35	0.143	30	38.900	2.006	5	39.400	0.894	30	5	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--2	chr2:176959300	G	A	93	0.161	78	36.590	7.967	15	37.267	2.963	72	15	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--3	chr2:176959300	G	A	38	0.184	31	36.581	9.369	7	38.571	2.507	29	7	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--4	chr2:176959300	G	A	65	0.108	58	37.879	4.892	7	39.143	1.464	56	7	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--5	chr2:176959300	G	A	71	0.211	56	37.268	5.867	15	38.533	3.292	52	14	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--6	chr2:176959300	G	A	102	0.049	97	33.340	11.356	5	34.200	4.658	82	4	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--7	chr2:176959300	G	NA	72	0	72	36.319	9.032	0	0	0	65	0	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--GL	chr2:176959300	G	NA	96	0	95	35.032	10.055	0	0	0	84	0	HOXD13	exonic	nonsynonymous_SNV
RCC_T1--1	chr2:179641951	G	NA	93	0	93	39.032	2.819	0	0	0	91	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--2	chr2:179641951	G	NA	222	0	220	37.114	6.052	0	0	0	209	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--3	chr2:179641951	G	NA	129	0	128	37.812	5.299	0	0	0	122	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--4	chr2:179641951	G	A	156	0.192	126	36.976	6.944	30	38.200	2.565	117	29	TTN	exonic	nonsynonymous_SNV
RCC_T1--5	chr2:179641951	G	NA	198	0	197	38.015	5.549	0	0	0	190	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--6	chr2:179641951	G	NA	170	0	169	35.172	8.700	0	0	0	150	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--7	chr2:179641951	G	NA	173	0	171	38.123	4.033	0	0	0	167	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--GL	chr2:179641951	G	NA	196	0	196	36.730	6.844	0	0	0	178	0	TTN	exonic	nonsynonymous_SNV
RCC_T1--1	chr22:23077328	G	C	122	0.107	109	38.183	4.280	13	33.154	12.307	108	11	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--2	chr22:23077328	G	C	278	0.180	228	34.197	10.420	50	33.420	10.647	192	40	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--3	chr22:23077328	G	C	170	0.094	153	37.542	5.325	16	36.750	3.337	145	15	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--4	chr22:23077328	G	C	263	0.289	186	35.054	9.657	76	35.632	7.933	166	70	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--5	chr22:23077328	G	C	237	0.257	175	35.457	8.984	61	36.820	7.233	158	57	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--6	chr22:23077328	G	C	285	0.088	259	31.301	12.146	25	28.760	11.952	199	14	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--7	chr22:23077328	G	C	238	0.227	184	36.255	8.066	54	35.852	7.754	170	48	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--GL	chr22:23077328	G	NA	281	0	279	34.387	9.134	0	0	0	244	0	GGTLC2(dist=86960),MIR650(dist=87942)	intergenic	NA
RCC_T1--1	chr2:227953311	A	C	41	0.122	36	38.333	4.014	5	39.600	0.548	34	5	COL4A4	intronic	NA
RCC_T1--2	chr2:227953311	A	C	61	0.197	48	35.938	7.667	12	36.917	4.719	46	11	COL4A4	intronic	NA
RCC_T1--3	chr2:227953311	A	C	43	0.209	34	38.000	6.642	9	39.222	0.972	33	9	COL4A4	intronic	NA
RCC_T1--4	chr2:227953311	A	C	79	0.278	57	38.351	3.142	22	38.364	2.629	55	22	COL4A4	intronic	NA
RCC_T1--5	chr2:227953311	A	C	69	0.217	54	38.500	2.633	15	33.267	13.041	54	12	COL4A4	intronic	NA
RCC_T1--6	chr2:227953311	A	C	71	0.042	68	35.221	8.606	3	36.333	2.887	58	3	COL4A4	intronic	NA
RCC_T1--7	chr2:227953311	A	C	61	0.213	48	38.667	2.452	13	37.154	5.210	48	12	COL4A4	intronic	NA
RCC_T1--GL	chr2:227953311	A	NA	78	0	78	38.128	3.089	0	0	0	76	0	COL4A4	intronic	NA
RCC_T1--1	chr22:29838040	G	C	36	0.111	32	36.312	8.110	4	38.250	3.500	29	4	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--2	chr22:29838040	G	C	74	0.216	58	36.069	7.856	16	38.250	2.978	52	16	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--3	chr22:29838040	G	C	45	0.067	42	38.238	5.934	3	39.333	0.577	41	3	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--4	chr22:29838040	G	C	53	0.019	52	37.692	5.900	1	37.000	0.000	49	1	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--5	chr22:29838040	G	C	77	0.247	58	37.517	6.088	19	38.632	1.978	53	19	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--6	chr22:29838040	G	C	100	0.030	97	33.371	11.431	3	36.667	3.215	81	3	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--7	chr22:29838040	G	C	41	0.415	24	35.542	9.904	17	38.294	3.442	21	16	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr22:29838040	G	NA	93	0	92	36.424	7.009	0	0	0	85	0	RFPL1	exonic	nonsynonymous_SNV
RCC_T1--1	chr2:233659522	C	NA	183	0	182	37.522	6.899	0	0	0	176	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--2	chr2:233659522	C	NA	570	0	570	34.907	8.562	0	0	0	501	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--3	chr2:233659522	C	NA	236	0	236	36.458	8.114	0	0	0	221	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--4	chr2:233659522	C	NA	359	0	359	37.014	6.037	0	0	0	333	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--5	chr2:233659522	C	NA	403	0	403	36.680	6.665	0	0	0	375	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--6	chr2:233659522	C	NA	489	0	486	32.346	11.173	0	0	0	391	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--7	chr2:233659522	C	T	344	0.308	238	36.210	7.383	106	35.679	7.857	218	95	GIGYF2	exonic	synonymous_SNV
RCC_T1--GL	chr2:233659522	C	NA	390	0	390	34.862	9.191	0	0	0	343	0	GIGYF2	exonic	synonymous_SNV
RCC_T1--1	chr2:234915633	C	A	16	0.188	13	36.692	8.390	3	40.000	0.000	12	3	TRPM8	intronic	NA
RCC_T1--2	chr2:234915633	C	NA	62	0	62	37.726	3.310	0	0	0	60	0	TRPM8	intronic	NA
RCC_T1--3	chr2:234915633	C	NA	17	0	17	34.765	12.493	0	0	0	15	0	TRPM8	intronic	NA
RCC_T1--4	chr2:234915633	C	NA	40	0	40	36.075	8.687	0	0	0	36	0	TRPM8	intronic	NA
RCC_T1--5	chr2:234915633	C	NA	63	0	63	37.651	6.947	0	0	0	59	0	TRPM8	intronic	NA
RCC_T1--6	chr2:234915633	C	NA	47	0	47	35.511	8.539	0	0	0	41	0	TRPM8	intronic	NA
RCC_T1--7	chr2:234915633	C	NA	42	0	42	37.810	6.078	0	0	0	41	0	TRPM8	intronic	NA
RCC_T1--GL	chr2:234915633	C	NA	41	0	40	37.050	6.214	0	0	0	38	0	TRPM8	intronic	NA
RCC_T1--1	chr22:41751446	C	NA	15	0	15	38.600	1.844	0	0	0	15	0	ZC3H7B	intronic	NA
RCC_T1--2	chr22:41751446	C	A	12	0.250	9	38.778	2.587	3	31.000	6.083	9	1	ZC3H7B	intronic	NA
RCC_T1--3	chr22:41751446	C	A	17	0.118	15	33.800	11.315	2	27.000	16.971	12	1	ZC3H7B	intronic	NA
RCC_T1--4	chr22:41751446	C	NA	19	0	19	36.211	4.328	0	0	0	17	0	ZC3H7B	intronic	NA
RCC_T1--5	chr22:41751446	C	A	28	0.179	23	35.174	10.727	5	36.200	3.114	21	5	ZC3H7B	intronic	NA
RCC_T1--6	chr22:41751446	C	A	13	0.077	12	34.833	5.952	1	38.000	0.000	11	1	ZC3H7B	intronic	NA
RCC_T1--7	chr22:41751446	C	A	34	0.206	27	34.185	11.218	7	37.286	3.251	23	7	ZC3H7B	intronic	NA
RCC_T1--GL	chr22:41751446	C	NA	36	0	35	37.286	3.149	0	0	0	34	0	ZC3H7B	intronic	NA
RCC_T1--1	chr2:55800928	A	T	22	0.182	18	37.778	8.935	4	38.250	3.500	17	4	SMEK2	intronic	NA
RCC_T1--2	chr2:55800928	A	T	58	0.172	48	39.250	1.732	10	39.600	0.699	48	10	SMEK2	intronic	NA
RCC_T1--3	chr2:55800928	A	T	24	0.208	19	39.421	1.216	5	39.000	1.732	19	5	SMEK2	intronic	NA
RCC_T1--4	chr2:55800928	A	T	34	0.029	33	38.515	3.465	1	40.000	0.000	31	1	SMEK2	intronic	NA
RCC_T1--5	chr2:55800928	A	T	35	0.257	26	38.885	3.179	9	36.000	9.287	25	8	SMEK2	intronic	NA
RCC_T1--6	chr2:55800928	A	T	49	0.061	46	37.304	8.014	3	40.000	0.000	43	3	SMEK2	intronic	NA
RCC_T1--7	chr2:55800928	A	T	29	0.241	22	37.955	8.044	7	39.429	0.787	21	7	SMEK2	intronic	NA
RCC_T1--GL	chr2:55800928	A	NA	47	0	47	37.277	7.240	0	0	0	43	0	SMEK2	intronic	NA
RCC_T1--1	chr2:69583530	A	T	19	0.211	15	39.133	1.846	4	39.500	1.000	15	4	GFPT1	intronic	NA
RCC_T1--2	chr2:69583530	A	NA	59	0	59	38.576	5.133	0	0	0	58	0	GFPT1	intronic	NA
RCC_T1--3	chr2:69583530	A	NA	25	0	25	39.360	1.680	0	0	0	25	0	GFPT1	intronic	NA
RCC_T1--4	chr2:69583530	A	NA	50	0	50	36.840	8.479	0	0	0	45	0	GFPT1	intronic	NA
RCC_T1--5	chr2:69583530	A	NA	62	0	62	38.597	5.049	0	0	0	61	0	GFPT1	intronic	NA
RCC_T1--6	chr2:69583530	A	NA	57	0	57	36.947	6.329	0	0	0	54	0	GFPT1	intronic	NA
RCC_T1--7	chr2:69583530	A	NA	45	0	45	38.933	3.564	0	0	0	44	0	GFPT1	intronic	NA
RCC_T1--GL	chr2:69583530	A	NA	72	0	72	37.153	7.736	0	0	0	69	0	GFPT1	intronic	NA
RCC_T1--1	chr2:71185565	C	G	26	0.038	24	37.083	3.635	1	38.000	0.000	22	1	ATP6V1B1	intronic	NA
RCC_T1--2	chr2:71185565	C	G	33	0.182	26	35.423	8.085	6	30.000	14.311	22	5	ATP6V1B1	intronic	NA
RCC_T1--3	chr2:71185565	C	G	23	0.391	14	35.500	4.468	9	34.778	12.508	11	8	ATP6V1B1	intronic	NA
RCC_T1--4	chr2:71185565	C	NA	45	0	45	33.578	8.609	0	0	0	38	0	ATP6V1B1	intronic	NA
RCC_T1--5	chr2:71185565	C	NA	42	0	41	33.610	10.733	0	0	0	33	0	ATP6V1B1	intronic	NA
RCC_T1--6	chr2:71185565	C	NA	37	0	37	27.486	13.112	0	0	0	21	0	ATP6V1B1	intronic	NA
RCC_T1--7	chr2:71185565	C	NA	43	0	43	32.558	11.849	0	0	0	35	0	ATP6V1B1	intronic	NA
RCC_T1--GL	chr2:71185565	C	NA	49	0	49	30.980	9.776	0	0	0	34	0	ATP6V1B1	intronic	NA
RCC_T1--1	chr2:88422563	G	A	36	0.083	33	39.121	2.848	3	39.667	0.577	32	3	FABP1	UTR3	NA
RCC_T1--2	chr2:88422563	G	A	123	0.252	92	38.272	5.231	31	37.839	4.510	88	29	FABP1	UTR3	NA
RCC_T1--3	chr2:88422563	G	A	77	0.143	66	38.788	3.444	11	38.455	3.328	64	11	FABP1	UTR3	NA
RCC_T1--4	chr2:88422563	G	A	79	0.304	55	38.636	5.569	24	38.667	2.140	53	24	FABP1	UTR3	NA
RCC_T1--5	chr2:88422563	G	A	96	0.240	73	38.630	3.795	23	37.957	3.444	71	22	FABP1	UTR3	NA
RCC_T1--6	chr2:88422563	G	A	106	0.038	102	36.088	6.817	4	36.750	3.948	87	4	FABP1	UTR3	NA
RCC_T1--7	chr2:88422563	G	A	82	0.293	58	38.207	4.811	24	39.208	1.693	53	24	FABP1	UTR3	NA
RCC_T1--GL	chr2:88422563	G	NA	90	0	89	35.483	9.379	0	0	0	80	0	FABP1	UTR3	NA
RCC_T1--1	chr2:97279483	C	A	24	0.208	19	39.789	0.535	5	37.600	5.367	19	4	KANSL3	intronic	NA
RCC_T1--2	chr2:97279483	C	NA	35	0	35	36.971	7.209	0	0	0	33	0	KANSL3	intronic	NA
RCC_T1--3	chr2:97279483	C	NA	23	0	23	37.696	7.882	0	0	0	22	0	KANSL3	intronic	NA
RCC_T1--4	chr2:97279483	C	NA	24	0	24	37.917	7.717	0	0	0	23	0	KANSL3	intronic	NA
RCC_T1--5	chr2:97279483	C	NA	41	0	41	38.488	2.703	0	0	0	40	0	KANSL3	intronic	NA
RCC_T1--6	chr2:97279483	C	NA	41	0	41	34.756	10.300	0	0	0	35	0	KANSL3	intronic	NA
RCC_T1--7	chr2:97279483	C	NA	21	0	21	37.571	8.219	0	0	0	20	0	KANSL3	intronic	NA
RCC_T1--GL	chr2:97279483	C	NA	43	0	43	36.488	6.112	0	0	0	38	0	KANSL3	intronic	NA
RCC_T1--1	chr3:101570902	G	A	37	0.135	31	37.806	6.901	5	39.400	0.548	30	5	NFKBIZ	intronic	NA
RCC_T1--2	chr3:101570902	G	A	109	0.174	90	37.167	7.329	19	36.421	5.284	84	18	NFKBIZ	intronic	NA
RCC_T1--3	chr3:101570902	G	A	39	0.231	30	37.733	7.254	9	38.111	3.140	28	9	NFKBIZ	intronic	NA
RCC_T1--4	chr3:101570902	G	NA	54	0	54	38.796	3.282	0	0	0	53	0	NFKBIZ	intronic	NA
RCC_T1--5	chr3:101570902	G	A	80	0.163	67	38.269	3.641	13	34.846	9.822	66	11	NFKBIZ	intronic	NA
RCC_T1--6	chr3:101570902	G	A	100	0.070	93	35.226	8.375	7	31.429	9.502	83	5	NFKBIZ	intronic	NA
RCC_T1--7	chr3:101570902	G	A	107	0.224	83	37.313	6.900	24	36.458	7.863	78	22	NFKBIZ	intronic	NA
RCC_T1--GL	chr3:101570902	G	NA	82	0	82	36.561	8.522	0	0	0	75	0	NFKBIZ	intronic	NA
RCC_T1--1	chr3:120357346	C	T	51	0.216	40	38.075	4.047	11	35.273	11.163	38	10	HGD	exonic	nonsynonymous_SNV
RCC_T1--2	chr3:120357346	C	T	162	0.210	128	35.188	9.433	34	36.971	6.847	113	32	HGD	exonic	nonsynonymous_SNV
RCC_T1--3	chr3:120357346	C	T	94	0.202	75	38.120	3.136	19	37.263	3.380	73	18	HGD	exonic	nonsynonymous_SNV
RCC_T1--4	chr3:120357346	C	T	138	0.268	101	36.723	6.928	37	36.730	6.590	96	35	HGD	exonic	nonsynonymous_SNV
RCC_T1--5	chr3:120357346	C	T	102	0.196	82	36.610	7.450	20	38.100	4.115	76	19	HGD	exonic	nonsynonymous_SNV
RCC_T1--6	chr3:120357346	C	T	178	0.084	163	33.528	10.236	15	33.200	10.805	131	12	HGD	exonic	nonsynonymous_SNV
RCC_T1--7	chr3:120357346	C	T	131	0.244	99	36.859	7.438	32	35.406	9.584	92	27	HGD	exonic	nonsynonymous_SNV
RCC_T1--GL	chr3:120357346	C	NA	153	0	152	34.651	9.015	0	0	0	129	0	HGD	exonic	nonsynonymous_SNV
RCC_T1--1	chr3:121514472	A	G	19	0.211	15	39.800	0.414	4	40.000	0.000	15	4	IQCB1	intronic	NA
RCC_T1--2	chr3:121514472	A	G	73	0.178	60	36.767	7.777	13	39.385	0.768	54	13	IQCB1	intronic	NA
RCC_T1--3	chr3:121514472	A	G	25	0.080	23	39.261	2.508	2	39.000	0.000	22	2	IQCB1	intronic	NA
RCC_T1--4	chr3:121514472	A	G	29	0.069	27	39.000	2.304	2	40.000	0.000	27	2	IQCB1	intronic	NA
RCC_T1--5	chr3:121514472	A	G	36	0.056	34	38.441	3.007	2	37.500	2.121	33	2	IQCB1	intronic	NA
RCC_T1--6	chr3:121514472	A	G	54	0.037	51	35.882	7.659	2	35.500	6.364	47	2	IQCB1	intronic	NA
RCC_T1--7	chr3:121514472	A	G	41	0.098	37	38.135	6.378	4	39.000	0.816	36	4	IQCB1	intronic	NA
RCC_T1--GL	chr3:121514472	A	NA	38	0	37	37.946	5.011	0	0	0	35	0	IQCB1	intronic	NA
RCC_T1--1	chr3:121514473	G	T	19	0.211	15	39.600	1.056	4	40.000	0.000	15	4	IQCB1	intronic	NA
RCC_T1--2	chr3:121514473	G	T	72	0.167	60	36.183	8.292	12	39.083	1.084	53	12	IQCB1	intronic	NA
RCC_T1--3	chr3:121514473	G	T	25	0.080	23	39.087	1.807	2	39.000	0.000	23	2	IQCB1	intronic	NA
RCC_T1--4	chr3:121514473	G	T	29	0.069	27	38.000	4.674	2	40.000	0.000	25	2	IQCB1	intronic	NA
RCC_T1--5	chr3:121514473	G	T	35	0.029	34	38.882	2.319	1	36.000	0.000	33	1	IQCB1	intronic	NA
RCC_T1--6	chr3:121514473	G	T	55	0.055	52	35.308	7.878	3	39.000	1.000	47	3	IQCB1	intronic	NA
RCC_T1--7	chr3:121514473	G	T	41	0.073	38	37.816	6.455	3	38.667	0.577	37	3	IQCB1	intronic	NA
RCC_T1--GL	chr3:121514473	G	NA	38	0	38	37.974	4.511	0	0	0	35	0	IQCB1	intronic	NA
RCC_T1--1	chr3:133342189	A	G	59	0.153	50	38.120	5.557	9	39.556	0.726	49	9	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--2	chr3:133342189	A	G	190	0.195	153	36.477	8.304	37	30.946	14.524	140	29	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--3	chr3:133342189	A	G	86	0.233	66	38.242	2.818	20	39.200	1.542	65	20	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--4	chr3:133342189	A	NA	139	0	139	37.612	4.800	0	0	0	130	0	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--5	chr3:133342189	A	NA	114	0	114	36.702	7.559	0	0	0	104	0	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--6	chr3:133342189	A	NA	196	0	195	33.626	10.458	0	0	0	161	0	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--7	chr3:133342189	A	NA	139	0	139	37.201	6.429	0	0	0	129	0	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr3:133342189	A	NA	173	0	171	35.351	9.039	0	0	0	152	0	TOPBP1	exonic	nonsynonymous_SNV
RCC_T1--1	chr3:134977960	T	C	43	0.140	37	38.676	2.769	6	39.333	1.211	36	6	EPHB1	exonic	stoploss_SNV
RCC_T1--2	chr3:134977960	T	C	89	0.270	65	37.615	4.126	24	38.833	1.926	61	24	EPHB1	exonic	stoploss_SNV
RCC_T1--3	chr3:134977960	T	C	61	0.115	54	39.074	2.054	7	36.429	4.577	54	6	EPHB1	exonic	stoploss_SNV
RCC_T1--4	chr3:134977960	T	NA	87	0	87	38.598	4.697	0	0	0	85	0	EPHB1	exonic	stoploss_SNV
RCC_T1--5	chr3:134977960	T	NA	70	0	70	37.243	6.006	0	0	0	64	0	EPHB1	exonic	stoploss_SNV
RCC_T1--6	chr3:134977960	T	C	115	0.070	107	35.280	8.619	8	37.750	2.765	95	8	EPHB1	exonic	stoploss_SNV
RCC_T1--7	chr3:134977960	T	NA	78	0	78	37.295	5.869	0	0	0	74	0	EPHB1	exonic	stoploss_SNV
RCC_T1--GL	chr3:134977960	T	NA	86	0	85	37.388	4.318	0	0	0	80	0	EPHB1	exonic	stoploss_SNV
RCC_T1--1	chr3:169706217	T	A	19	0.211	15	38.533	2.134	4	39.000	2.000	15	4	SEC62	intronic	NA
RCC_T1--2	chr3:169706217	T	A	72	0.208	56	37.107	7.218	15	36.800	8.487	53	14	SEC62	intronic	NA
RCC_T1--3	chr3:169706217	T	A	38	0.184	31	38.194	3.745	7	40.000	0.000	29	7	SEC62	intronic	NA
RCC_T1--4	chr3:169706217	T	A	43	0.349	28	37.357	7.435	15	38.667	3.086	26	14	SEC62	intronic	NA
RCC_T1--5	chr3:169706217	T	A	102	0.127	89	37.652	6.611	13	36.154	10.447	85	12	SEC62	intronic	NA
RCC_T1--6	chr3:169706217	T	A	71	0.014	69	34.812	8.501	1	40.000	0.000	59	1	SEC62	intronic	NA
RCC_T1--7	chr3:169706217	T	A	64	0.281	46	38.413	4.660	18	38.000	3.865	45	17	SEC62	intronic	NA
RCC_T1--GL	chr3:169706217	T	NA	73	0	72	35.833	8.007	0	0	0	61	0	SEC62	intronic	NA
RCC_T1--1	chr3:169706228	T	G	19	0.211	15	39.400	1.298	4	39.000	2.000	15	4	SEC62	intronic	NA
RCC_T1--2	chr3:169706228	T	G	66	0.197	53	36.774	8.948	13	37.385	4.840	49	12	SEC62	intronic	NA
RCC_T1--3	chr3:169706228	T	G	34	0.206	27	39.148	1.916	7	40.000	0.000	27	7	SEC62	intronic	NA
RCC_T1--4	chr3:169706228	T	G	37	0.405	22	38.727	2.947	15	37.800	3.783	21	14	SEC62	intronic	NA
RCC_T1--5	chr3:169706228	T	G	90	0.089	82	37.500	5.589	8	32.625	13.005	77	6	SEC62	intronic	NA
RCC_T1--6	chr3:169706228	T	G	65	0.046	62	35.403	7.939	3	25.333	20.306	54	2	SEC62	intronic	NA
RCC_T1--7	chr3:169706228	T	G	48	0.271	35	37.543	4.565	13	39.000	1.915	32	13	SEC62	intronic	NA
RCC_T1--GL	chr3:169706228	T	NA	65	0	65	37.338	5.409	0	0	0	62	0	SEC62	intronic	NA
RCC_T1--1	chr3:184072352	C	G	24	0.083	22	36.591	8.210	2	38.500	0.707	20	2	CLCN2	exonic	synonymous_SNV
RCC_T1--2	chr3:184072352	C	G	48	0.104	43	34.744	10.808	5	29.600	15.598	39	4	CLCN2	exonic	synonymous_SNV
RCC_T1--3	chr3:184072352	C	G	26	0.038	25	36.680	5.375	1	40.000	0.000	24	1	CLCN2	exonic	synonymous_SNV
RCC_T1--4	chr3:184072352	C	G	25	0.320	17	37.235	2.611	8	33.250	12.792	17	7	CLCN2	exonic	synonymous_SNV
RCC_T1--5	chr3:184072352	C	G	28	0.071	26	36.154	7.604	2	37.500	2.121	25	2	CLCN2	exonic	synonymous_SNV
RCC_T1--6	chr3:184072352	C	NA	43	0	42	30.810	12.432	0	0	0	32	0	CLCN2	exonic	synonymous_SNV
RCC_T1--7	chr3:184072352	C	G	31	0.290	22	37.000	4.504	9	38.333	1.732	19	9	CLCN2	exonic	synonymous_SNV
RCC_T1--GL	chr3:184072352	C	NA	42	0	41	31.951	11.432	0	0	0	33	0	CLCN2	exonic	synonymous_SNV
RCC_T1--1	chr3:184072353	C	G	27	0.111	24	36.625	7.912	3	38.667	0.577	22	3	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--2	chr3:184072353	C	G	49	0.082	45	34.800	10.947	4	27.250	17.017	40	3	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--3	chr3:184072353	C	G	27	0.074	25	36.480	5.716	2	20.500	26.163	23	1	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--4	chr3:184072353	C	G	27	0.333	18	37.333	2.701	9	31.444	11.780	18	6	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--5	chr3:184072353	C	G	30	0.067	28	35.071	9.703	2	36.000	4.243	26	2	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--6	chr3:184072353	C	NA	43	0	43	30.326	12.484	0	0	0	33	0	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--7	chr3:184072353	C	G	32	0.281	23	37.652	3.242	9	37.778	2.386	22	9	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--GL	chr3:184072353	C	NA	41	0	40	32.725	10.938	0	0	0	32	0	CLCN2	exonic	nonsynonymous_SNV
RCC_T1--1	chr3:197762658	C	NA	20	0	20	39.750	0.639	0	0	0	20	0	LMLN	intronic	NA
RCC_T1--2	chr3:197762658	C	NA	63	0	63	37.714	5.401	0	0	0	60	0	LMLN	intronic	NA
RCC_T1--3	chr3:197762658	C	NA	27	0	27	37.444	6.664	0	0	0	25	0	LMLN	intronic	NA
RCC_T1--4	chr3:197762658	C	NA	25	0	25	37.120	8.253	0	0	0	23	0	LMLN	intronic	NA
RCC_T1--5	chr3:197762658	C	NA	36	0	36	35.139	10.559	0	0	0	32	0	LMLN	intronic	NA
RCC_T1--6	chr3:197762658	C	NA	45	0	45	34.444	9.887	0	0	0	39	0	LMLN	intronic	NA
RCC_T1--7	chr3:197762658	C	G	28	0.214	22	36.636	8.753	6	37.333	4.179	20	6	LMLN	intronic	NA
RCC_T1--GL	chr3:197762658	C	NA	40	0	40	35.675	8.562	0	0	0	34	0	LMLN	intronic	NA
RCC_T1--1	chr3:20215857	A	G	66	0.136	57	37.561	5.227	9	39.778	0.441	52	9	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--2	chr3:20215857	A	G	232	0.228	179	37.123	6.678	53	37.547	5.542	164	52	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--3	chr3:20215857	A	G	86	0.140	74	38.554	3.385	12	39.583	1.165	70	12	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--4	chr3:20215857	A	G	121	0.388	74	36.986	8.059	47	36.936	8.326	70	42	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--5	chr3:20215857	A	G	158	0.114	140	37.257	6.950	18	39.167	1.948	131	18	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--6	chr3:20215857	A	G	214	0.079	195	34.800	9.064	17	37.000	4.623	167	15	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--7	chr3:20215857	A	G	122	0.311	84	37.667	6.223	38	34.316	10.429	80	31	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr3:20215857	A	NA	166	0	164	36.701	6.337	0	0	0	152	0	SGOL1	exonic	nonsynonymous_SNV
RCC_T1--1	chr3:27350427	A	C	50	0.040	48	36.458	9.440	2	39.000	1.414	44	2	NEK10	exonic	nonsynonymous_SNV
RCC_T1--2	chr3:27350427	A	C	151	0.212	119	34.269	11.119	32	36.438	7.492	100	30	NEK10	exonic	nonsynonymous_SNV
RCC_T1--3	chr3:27350427	A	C	52	0.288	37	37.297	6.441	15	39.733	0.594	36	15	NEK10	exonic	nonsynonymous_SNV
RCC_T1--4	chr3:27350427	A	C	72	0.264	52	38.538	3.589	19	37.105	8.806	50	18	NEK10	exonic	nonsynonymous_SNV
RCC_T1--5	chr3:27350427	A	C	105	0.124	92	38.337	2.883	13	39.769	0.832	90	13	NEK10	exonic	nonsynonymous_SNV
RCC_T1--6	chr3:27350427	A	C	112	0.071	104	35.048	9.119	8	39.625	0.744	92	8	NEK10	exonic	nonsynonymous_SNV
RCC_T1--7	chr3:27350427	A	C	93	0.376	58	38.431	2.256	35	36.886	7.251	58	33	NEK10	exonic	nonsynonymous_SNV
RCC_T1--GL	chr3:27350427	A	NA	92	0	92	36.217	8.263	0	0	0	82	0	NEK10	exonic	nonsynonymous_SNV
RCC_T1--1	chr3:47059231	T	NA	20	0	20	37.050	6.613	0	0	0	18	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--2	chr3:47059231	T	NA	39	0	39	34.923	8.257	0	0	0	32	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--3	chr3:47059231	T	NA	21	0	21	38.476	2.205	0	0	0	21	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--4	chr3:47059231	T	A	34	0.235	26	35.692	9.277	8	33.625	12.928	23	7	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--5	chr3:47059231	T	NA	57	0	57	37.474	6.392	0	0	0	52	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--6	chr3:47059231	T	NA	69	0	69	34.986	7.798	0	0	0	61	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--7	chr3:47059231	T	NA	30	0	30	38.900	2.040	0	0	0	30	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--GL	chr3:47059231	T	NA	65	0	65	34.862	10.025	0	0	0	58	0	SETD2(NM_014159:exon21:c.7432-2A>T)	splicing	NA
RCC_T1--1	chr3:48423605	C	A	15	0.200	12	35.667	10.782	3	38.333	1.155	11	3	FBXW12	intronic	NA
RCC_T1--2	chr3:48423605	C	NA	22	0	22	34.636	11.371	0	0	0	19	0	FBXW12	intronic	NA
RCC_T1--3	chr3:48423605	C	NA	19	0	19	35.895	8.850	0	0	0	17	0	FBXW12	intronic	NA
RCC_T1--4	chr3:48423605	C	NA	26	0	26	37.308	7.583	0	0	0	25	0	FBXW12	intronic	NA
RCC_T1--5	chr3:48423605	C	NA	48	0	48	35.833	9.499	0	0	0	43	0	FBXW12	intronic	NA
RCC_T1--6	chr3:48423605	C	NA	42	0	42	30.810	13.433	0	0	0	33	0	FBXW12	intronic	NA
RCC_T1--7	chr3:48423605	C	NA	16	0	16	32.750	11.162	0	0	0	13	0	FBXW12	intronic	NA
RCC_T1--GL	chr3:48423605	C	NA	50	0	50	34.500	11.160	0	0	0	45	0	FBXW12	intronic	NA
RCC_T1--1	chr4:123377270	A	C	22	0.318	15	38.667	2.968	7	34.286	14.256	15	6	IL2	intronic	NA
RCC_T1--2	chr4:123377270	A	C	79	0.215	62	37.242	7.598	17	38.588	2.425	57	17	IL2	intronic	NA
RCC_T1--3	chr4:123377270	A	C	24	0.250	18	37.722	8.923	6	39.667	0.516	17	6	IL2	intronic	NA
RCC_T1--4	chr4:123377270	A	NA	43	0	43	37.140	8.219	0	0	0	41	0	IL2	intronic	NA
RCC_T1--5	chr4:123377270	A	C	66	0.152	56	36.143	9.403	10	39.700	0.483	51	10	IL2	intronic	NA
RCC_T1--6	chr4:123377270	A	C	59	0.051	56	34.054	10.549	3	37.333	3.786	48	3	IL2	intronic	NA
RCC_T1--7	chr4:123377270	A	C	53	0.302	37	36.054	10.506	16	38.625	2.553	34	16	IL2	intronic	NA
RCC_T1--GL	chr4:123377270	A	NA	61	0	60	36.750	6.844	0	0	0	54	0	IL2	intronic	NA
RCC_T1--1	chr4:15572155	G	C	47	0.064	43	38.651	5.940	3	39.667	0.577	42	3	CC2D2A	intronic	NA
RCC_T1--2	chr4:15572155	G	C	106	0.236	79	35.873	7.862	25	37.000	5.252	70	24	CC2D2A	intronic	NA
RCC_T1--3	chr4:15572155	G	C	59	0.288	42	37.976	6.034	17	37.824	5.040	41	16	CC2D2A	intronic	NA
RCC_T1--4	chr4:15572155	G	C	100	0.340	66	36.667	8.321	34	37.471	6.815	61	32	CC2D2A	intronic	NA
RCC_T1--5	chr4:15572155	G	C	96	0.250	72	38.111	5.479	24	38.667	2.514	69	24	CC2D2A	intronic	NA
RCC_T1--6	chr4:15572155	G	C	114	0.026	111	34.721	9.303	3	39.000	1.732	94	3	CC2D2A	intronic	NA
RCC_T1--7	chr4:15572155	G	C	74	0.405	44	37.023	8.451	30	36.800	7.425	40	27	CC2D2A	intronic	NA
RCC_T1--GL	chr4:15572155	G	NA	86	0	86	38.128	3.356	0	0	0	83	0	CC2D2A	intronic	NA
RCC_T1--1	chr4:39456410	A	NA	14	0	14	39.000	2.148	0	0	0	14	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--2	chr4:39456410	A	NA	45	0	45	38.578	5.926	0	0	0	43	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--3	chr4:39456410	A	NA	34	0	34	39.882	0.409	0	0	0	34	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--4	chr4:39456410	A	G	45	0.244	34	39.324	1.590	11	39.091	1.814	34	11	MIR1273H	ncRNA_intronic	NA
RCC_T1--5	chr4:39456410	A	NA	50	0	50	39.140	2.100	0	0	0	49	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--6	chr4:39456410	A	NA	54	0	54	37.259	6.699	0	0	0	50	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--7	chr4:39456410	A	NA	35	0	35	39.000	3.456	0	0	0	34	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--GL	chr4:39456410	A	NA	36	0	36	37.583	6.587	0	0	0	35	0	MIR1273H	ncRNA_intronic	NA
RCC_T1--1	chr4:48148397	C	NA	76	0	76	38.526	3.982	0	0	0	74	0	TEC	exonic	synonymous_SNV
RCC_T1--2	chr4:48148397	C	NA	240	0	238	36.034	9.154	0	0	0	218	0	TEC	exonic	synonymous_SNV
RCC_T1--3	chr4:48148397	C	NA	103	0	102	37.431	7.007	0	0	0	96	0	TEC	exonic	synonymous_SNV
RCC_T1--4	chr4:48148397	C	A	145	0.179	119	36.941	7.092	26	38.808	2.450	109	25	TEC	exonic	synonymous_SNV
RCC_T1--5	chr4:48148397	C	NA	171	0	171	36.386	8.678	0	0	0	154	0	TEC	exonic	synonymous_SNV
RCC_T1--6	chr4:48148397	C	NA	201	0	201	34.567	10.256	0	0	0	173	0	TEC	exonic	synonymous_SNV
RCC_T1--7	chr4:48148397	C	NA	146	0	146	35.363	8.985	0	0	0	131	0	TEC	exonic	synonymous_SNV
RCC_T1--GL	chr4:48148397	C	NA	189	0	189	37.042	6.237	0	0	0	173	0	TEC	exonic	synonymous_SNV
RCC_T1--1	chr4:70460968	C	T	50	0.120	43	38.163	6.114	6	35.167	10.008	41	5	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--2	chr4:70460968	C	T	153	0.196	123	35.878	9.651	30	33.933	10.096	110	24	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--3	chr4:70460968	C	T	49	0.184	40	37.850	6.475	9	37.889	3.689	38	8	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--4	chr4:70460968	C	NA	83	0	83	37.723	7.392	0	0	0	78	0	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--5	chr4:70460968	C	T	103	0.165	86	38.384	5.861	17	36.353	3.258	84	17	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--6	chr4:70460968	C	T	133	0.023	129	34.031	10.530	3	36.333	2.309	112	3	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--7	chr4:70460968	C	T	72	0.222	56	36.786	8.817	16	36.188	3.371	52	15	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--GL	chr4:70460968	C	NA	108	0	107	35.215	10.206	0	0	0	94	0	UGT2A1(NM_001252275:exon6:c.997-1G>A,NM_006798:exon6:c.997-1G>A,NM_001252274:exon6:c.1495-1G>A),UGT2A2(NM_001105677:exon5:c.1024-1G>A)	splicing	NA
RCC_T1--1	chr4:85758263	A	G	21	0.048	20	38.350	4.004	1	40.000	0.000	19	1	WDFY3	intronic	NA
RCC_T1--2	chr4:85758263	A	G	65	0.200	52	38.231	5.683	13	38.923	2.253	50	13	WDFY3	intronic	NA
RCC_T1--3	chr4:85758263	A	G	22	0.136	18	39.444	0.922	3	40.000	0.000	18	3	WDFY3	intronic	NA
RCC_T1--4	chr4:85758263	A	G	50	0.420	29	39.586	0.682	21	39.190	1.778	29	21	WDFY3	intronic	NA
RCC_T1--5	chr4:85758263	A	G	45	0.378	28	39.786	0.499	17	39.647	0.606	28	17	WDFY3	intronic	NA
RCC_T1--6	chr4:85758263	A	G	61	0.033	59	33.542	12.301	2	36.500	0.707	50	2	WDFY3	intronic	NA
RCC_T1--7	chr4:85758263	A	G	36	0.111	32	38.906	1.802	4	37.750	3.202	32	4	WDFY3	intronic	NA
RCC_T1--GL	chr4:85758263	A	NA	42	0	42	36.738	8.514	0	0	0	38	0	WDFY3	intronic	NA
RCC_T1--1	chr4:86921608	C	A	57	0.035	54	20.574	16.541	2	33.500	7.778	24	1	ARHGAP24	intronic	NA
RCC_T1--2	chr4:86921608	C	NA	164	0	156	17.263	16.555	0	0	0	58	0	ARHGAP24	intronic	NA
RCC_T1--3	chr4:86921608	C	A	69	0.014	68	19.412	17.359	1	40.000	0.000	32	1	ARHGAP24	intronic	NA
RCC_T1--4	chr4:86921608	C	NA	82	0	79	17.810	16.684	0	0	0	28	0	ARHGAP24	intronic	NA
RCC_T1--5	chr4:86921608	C	A	118	0.076	108	16.824	17.034	9	27.667	15.116	42	6	ARHGAP24	intronic	NA
RCC_T1--6	chr4:86921608	C	A	103	0.058	97	19.309	17.116	6	25.333	14.692	44	3	ARHGAP24	intronic	NA
RCC_T1--7	chr4:86921608	C	A	94	0.096	84	18.774	16.912	9	33.667	6.442	36	6	ARHGAP24	intronic	NA
RCC_T1--GL	chr4:86921608	C	NA	139	0	138	17.942	16.815	0	0	0	57	0	ARHGAP24	intronic	NA
RCC_T1--1	chr5:102515900	G	A	31	0.065	29	37.103	8.015	2	35.000	7.071	26	2	PPIP5K2	intronic	NA
RCC_T1--2	chr5:102515900	G	A	99	0.232	76	38.079	5.030	23	38.913	2.466	72	22	PPIP5K2	intronic	NA
RCC_T1--3	chr5:102515900	G	A	39	0.179	32	38.656	3.451	7	39.429	0.976	31	7	PPIP5K2	intronic	NA
RCC_T1--4	chr5:102515900	G	A	68	0.235	51	38.275	5.166	16	38.938	1.569	50	16	PPIP5K2	intronic	NA
RCC_T1--5	chr5:102515900	G	A	81	0.198	65	38.046	5.167	16	36.250	9.088	63	14	PPIP5K2	intronic	NA
RCC_T1--6	chr5:102515900	G	A	80	0.062	75	36.693	7.845	5	38.800	1.789	68	5	PPIP5K2	intronic	NA
RCC_T1--7	chr5:102515900	G	A	81	0.222	63	36.968	8.459	18	37.889	4.283	58	17	PPIP5K2	intronic	NA
RCC_T1--GL	chr5:102515900	G	NA	78	0	78	37.590	7.011	0	0	0	73	0	PPIP5K2	intronic	NA
RCC_T1--1	chr5:126206349	C	T	30	0.267	22	38.545	2.923	8	37.875	3.227	21	8	MARCH3	exonic	synonymous_SNV
RCC_T1--2	chr5:126206349	C	T	103	0.262	76	37.737	4.773	27	36.407	6.021	75	24	MARCH3	exonic	synonymous_SNV
RCC_T1--3	chr5:126206349	C	T	39	0.103	35	39.000	2.015	4	39.500	0.577	35	4	MARCH3	exonic	synonymous_SNV
RCC_T1--4	chr5:126206349	C	NA	74	0	74	37.986	5.602	0	0	0	69	0	MARCH3	exonic	synonymous_SNV
RCC_T1--5	chr5:126206349	C	T	74	0.378	46	35.587	10.004	28	39.071	3.310	39	27	MARCH3	exonic	synonymous_SNV
RCC_T1--6	chr5:126206349	C	T	105	0.067	98	35.173	9.391	7	38.286	1.496	85	7	MARCH3	exonic	synonymous_SNV
RCC_T1--7	chr5:126206349	C	T	68	0.309	47	37.915	4.777	21	38.429	2.561	42	21	MARCH3	exonic	synonymous_SNV
RCC_T1--GL	chr5:126206349	C	NA	98	0	98	37.071	6.160	0	0	0	92	0	MARCH3	exonic	synonymous_SNV
RCC_T1--1	chr5:150490176	C	T	33	0.091	30	37.033	4.468	3	39.667	0.577	28	3	ANXA6	intronic	NA
RCC_T1--2	chr5:150490176	C	T	42	0.167	35	37.057	5.247	7	22.857	16.170	34	3	ANXA6	intronic	NA
RCC_T1--3	chr5:150490176	C	T	40	0.175	33	33.970	10.944	7	38.143	2.545	28	7	ANXA6	intronic	NA
RCC_T1--4	chr5:150490176	C	T	37	0.432	20	36.650	4.392	16	29.188	11.415	18	10	ANXA6	intronic	NA
RCC_T1--5	chr5:150490176	C	T	44	0.182	36	35.250	7.458	8	31.125	12.609	32	5	ANXA6	intronic	NA
RCC_T1--6	chr5:150490176	C	NA	48	0	48	26.604	13.289	0	0	0	27	0	ANXA6	intronic	NA
RCC_T1--7	chr5:150490176	C	T	29	0.172	24	35.917	5.845	5	32.200	3.347	21	4	ANXA6	intronic	NA
RCC_T1--GL	chr5:150490176	C	NA	45	0	43	29.419	10.305	0	0	0	26	0	ANXA6	intronic	NA
RCC_T1--1	chr5:157165070	G	A	14	0.214	11	37.727	4.407	3	40.000	0.000	10	3	THG1L	intronic	NA
RCC_T1--2	chr5:157165070	G	NA	35	0	35	37.943	3.694	0	0	0	33	0	THG1L	intronic	NA
RCC_T1--3	chr5:157165070	G	NA	19	0	19	37.947	3.291	0	0	0	18	0	THG1L	intronic	NA
RCC_T1--4	chr5:157165070	G	NA	31	0	31	34.903	10.245	0	0	0	27	0	THG1L	intronic	NA
RCC_T1--5	chr5:157165070	G	NA	26	0	26	38.769	1.336	0	0	0	26	0	THG1L	intronic	NA
RCC_T1--6	chr5:157165070	G	NA	39	0	39	33.462	10.997	0	0	0	33	0	THG1L	intronic	NA
RCC_T1--7	chr5:157165070	G	NA	24	0	24	36.333	7.867	0	0	0	23	0	THG1L	intronic	NA
RCC_T1--GL	chr5:157165070	G	NA	36	0	36	35.361	8.803	0	0	0	33	0	THG1L	intronic	NA
RCC_T1--1	chr6:117114274	T	NA	58	0	58	37.793	5.809	0	0	0	55	0	GPRC6A	exonic	synonymous_SNV
RCC_T1--2	chr6:117114274	T	NA	151	0	150	36.787	6.436	0	0	0	137	0	GPRC6A	exonic	synonymous_SNV
RCC_T1--3	chr6:117114274	T	NA	62	0	62	37.210	7.257	0	0	0	58	0	GPRC6A	exonic	synonymous_SNV
RCC_T1--4	chr6:117114274	T	NA	118	0	118	36.508	6.603	0	0	0	107	0	GPRC6A	exonic	synonymous_SNV
RCC_T1--5	chr6:117114274	T	C	140	0.157	118	36.568	7.902	22	38.636	2.838	107	22	GPRC6A	exonic	synonymous_SNV
RCC_T1--6	chr6:117114274	T	C	185	0.054	175	34.840	8.237	10	37.100	4.458	149	9	GPRC6A	exonic	synonymous_SNV
RCC_T1--7	chr6:117114274	T	C	136	0.279	98	35.796	8.652	38	38.763	2.465	85	37	GPRC6A	exonic	synonymous_SNV
RCC_T1--GL	chr6:117114274	T	NA	159	0	159	35.572	8.558	0	0	0	142	0	GPRC6A	exonic	synonymous_SNV
RCC_T1--1	chr6:135308990	G	A	26	0.077	24	40.000	0.000	2	40.000	0.000	24	2	HBS1L	intronic	NA
RCC_T1--2	chr6:135308990	G	A	60	0.250	45	35.378	10.646	15	39.667	0.724	39	15	HBS1L	intronic	NA
RCC_T1--3	chr6:135308990	G	A	39	0.205	31	39.516	1.092	8	39.625	0.744	31	8	HBS1L	intronic	NA
RCC_T1--4	chr6:135308990	G	NA	32	0	32	38.062	6.744	0	0	0	31	0	HBS1L	intronic	NA
RCC_T1--5	chr6:135308990	G	NA	60	0	59	38.661	3.176	0	0	0	57	0	HBS1L	intronic	NA
RCC_T1--6	chr6:135308990	G	NA	77	0	77	36.013	8.027	0	0	0	72	0	HBS1L	intronic	NA
RCC_T1--7	chr6:135308990	G	NA	39	0	39	37.718	6.617	0	0	0	37	0	HBS1L	intronic	NA
RCC_T1--GL	chr6:135308990	G	NA	45	0	45	39.444	1.501	0	0	0	45	0	HBS1L	intronic	NA
RCC_T1--1	chr6:160671701	G	A	66	0.167	55	38.673	5.196	11	39.545	0.688	54	11	SLC22A2	exonic	synonymous_SNV
RCC_T1--2	chr6:160671701	G	A	95	0.200	76	38.579	4.759	19	35.579	9.323	74	16	SLC22A2	exonic	synonymous_SNV
RCC_T1--3	chr6:160671701	G	A	59	0.136	51	38.745	3.039	8	39.375	0.916	50	8	SLC22A2	exonic	synonymous_SNV
RCC_T1--4	chr6:160671701	G	NA	93	0	93	37.796	5.386	0	0	0	88	0	SLC22A2	exonic	synonymous_SNV
RCC_T1--5	chr6:160671701	G	NA	92	0	92	38.043	4.627	0	0	0	89	0	SLC22A2	exonic	synonymous_SNV
RCC_T1--6	chr6:160671701	G	NA	103	0	100	34.750	9.809	0	0	0	85	0	SLC22A2	exonic	synonymous_SNV
RCC_T1--7	chr6:160671701	G	NA	72	0	72	38.431	4.956	0	0	0	70	0	SLC22A2	exonic	synonymous_SNV
RCC_T1--GL	chr6:160671701	G	NA	107	0	105	36.505	7.902	0	0	0	97	0	SLC22A2	exonic	synonymous_SNV
RCC_T1--1	chr6:166836795	C	T	12	0.167	10	37.700	3.974	2	39.500	0.707	9	2	RPS6KA2	exonic	synonymous_SNV
RCC_T1--2	chr6:166836795	C	T	44	0.205	35	35.029	7.258	9	28.222	15.707	31	6	RPS6KA2	exonic	synonymous_SNV
RCC_T1--3	chr6:166836795	C	T	19	0.263	14	38.214	2.517	5	39.200	1.095	14	5	RPS6KA2	exonic	synonymous_SNV
RCC_T1--4	chr6:166836795	C	NA	29	0	29	32.931	12.862	0	0	0	25	0	RPS6KA2	exonic	synonymous_SNV
RCC_T1--5	chr6:166836795	C	NA	37	0	36	33.167	11.946	0	0	0	29	0	RPS6KA2	exonic	synonymous_SNV
RCC_T1--6	chr6:166836795	C	T	33	0.091	29	31.586	12.491	3	32.667	4.163	25	2	RPS6KA2	exonic	synonymous_SNV
RCC_T1--7	chr6:166836795	C	NA	36	0	36	36.361	5.399	0	0	0	33	0	RPS6KA2	exonic	synonymous_SNV
RCC_T1--GL	chr6:166836795	C	NA	39	0	38	31.447	12.502	0	0	0	29	0	RPS6KA2	exonic	synonymous_SNV
RCC_T1--1	chr6:167550439	T	A	46	0.130	40	39.425	1.567	6	37.833	4.401	40	5	CCR6	exonic	nonsynonymous_SNV
RCC_T1--2	chr6:167550439	T	A	105	0.219	82	37.500	6.553	23	38.783	2.275	78	23	CCR6	exonic	nonsynonymous_SNV
RCC_T1--3	chr6:167550439	T	A	71	0.169	59	37.780	4.218	12	38.917	2.193	55	12	CCR6	exonic	nonsynonymous_SNV
RCC_T1--4	chr6:167550439	T	A	129	0.333	86	38.233	3.750	43	38.349	2.663	83	43	CCR6	exonic	nonsynonymous_SNV
RCC_T1--5	chr6:167550439	T	A	120	0.183	98	38.408	3.440	22	38.909	2.448	93	22	CCR6	exonic	nonsynonymous_SNV
RCC_T1--6	chr6:167550439	T	A	160	0.062	150	35.947	6.993	10	33.800	11.487	133	9	CCR6	exonic	nonsynonymous_SNV
RCC_T1--7	chr6:167550439	T	A	96	0.229	74	37.554	5.206	22	38.955	2.126	69	22	CCR6	exonic	nonsynonymous_SNV
RCC_T1--GL	chr6:167550439	T	NA	139	0	139	37.237	6.153	0	0	0	130	0	CCR6	exonic	nonsynonymous_SNV
RCC_T1--1	chr6:17817439	G	T	55	0.073	51	39.000	1.600	4	38.500	1.291	51	4	KIF13A	exonic	synonymous_SNV
RCC_T1--2	chr6:17817439	G	T	111	0.252	83	36.867	6.814	28	36.214	7.330	75	26	KIF13A	exonic	synonymous_SNV
RCC_T1--3	chr6:17817439	G	T	82	0.195	66	38.318	2.579	16	37.875	2.849	66	16	KIF13A	exonic	synonymous_SNV
RCC_T1--4	chr6:17817439	G	NA	86	0	86	36.628	6.464	0	0	0	79	0	KIF13A	exonic	synonymous_SNV
RCC_T1--5	chr6:17817439	G	T	81	0.148	69	37.014	6.135	12	36.000	6.267	66	11	KIF13A	exonic	synonymous_SNV
RCC_T1--6	chr6:17817439	G	T	133	0.075	123	34.659	8.930	10	34.800	4.104	105	8	KIF13A	exonic	synonymous_SNV
RCC_T1--7	chr6:17817439	G	T	66	0.288	47	35.277	7.122	19	37.737	5.342	40	18	KIF13A	exonic	synonymous_SNV
RCC_T1--GL	chr6:17817439	G	NA	113	0	113	36.027	5.914	0	0	0	103	0	KIF13A	exonic	synonymous_SNV
RCC_T1--1	chr6:4703306	C	A	25	0.080	23	38.957	1.492	2	37.500	3.536	23	2	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--2	chr6:4703306	C	A	84	0.250	63	37.889	5.686	21	38.048	3.892	60	20	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--3	chr6:4703306	C	A	56	0.250	42	38.786	1.920	14	38.429	3.413	42	13	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--4	chr6:4703306	C	A	57	0.368	36	38.917	2.941	21	39.000	2.121	35	21	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--5	chr6:4703306	C	A	34	0.147	29	38.793	2.455	5	37.600	3.362	29	5	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--6	chr6:4703306	C	A	77	0.026	75	35.107	8.925	2	24.500	21.920	66	1	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--7	chr6:4703306	C	A	66	0.318	45	36.956	6.836	21	37.810	5.600	42	20	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--GL	chr6:4703306	C	NA	51	0	50	37.660	6.133	0	0	0	47	0	RP3-400B16.1(dist=545687),CDYL(dist=73374)	intergenic	NA
RCC_T1--1	chr6:54191542	A	G	73	0.082	67	38.731	5.142	6	39.500	0.837	65	6	TINAG	intronic	NA
RCC_T1--2	chr6:54191542	A	G	198	0.263	146	35.425	8.181	52	37.577	6.102	126	49	TINAG	intronic	NA
RCC_T1--3	chr6:54191542	A	G	112	0.223	87	38.322	4.761	25	38.520	4.094	82	24	TINAG	intronic	NA
RCC_T1--4	chr6:54191542	A	G	144	0.278	104	36.423	8.260	40	38.600	5.252	96	39	TINAG	intronic	NA
RCC_T1--5	chr6:54191542	A	G	155	0.116	137	36.737	8.610	18	37.778	4.181	127	17	TINAG	intronic	NA
RCC_T1--6	chr6:54191542	A	G	167	0.108	148	34.723	7.990	18	38.611	2.062	126	18	TINAG	intronic	NA
RCC_T1--7	chr6:54191542	A	G	143	0.231	110	36.536	7.697	33	38.758	3.326	102	32	TINAG	intronic	NA
RCC_T1--GL	chr6:54191542	A	NA	186	0	186	36.468	6.733	0	0	0	165	0	TINAG	intronic	NA
RCC_T1--1	chr6:74518033	A	NA	12	0	12	35.167	11.207	0	0	0	10	0	CD109	intronic	NA
RCC_T1--2	chr6:74518033	A	C	65	0.015	64	38.219	3.756	1	40.000	0.000	59	1	CD109	intronic	NA
RCC_T1--3	chr6:74518033	A	NA	19	0	19	37.842	8.688	0	0	0	18	0	CD109	intronic	NA
RCC_T1--4	chr6:74518033	A	C	44	0.182	36	38.389	6.473	8	35.125	13.389	35	7	CD109	intronic	NA
RCC_T1--5	chr6:74518033	A	NA	51	0	50	38.900	3.112	0	0	0	48	0	CD109	intronic	NA
RCC_T1--6	chr6:74518033	A	NA	46	0	46	36.957	6.899	0	0	0	43	0	CD109	intronic	NA
RCC_T1--7	chr6:74518033	A	NA	35	0	35	38.057	4.179	0	0	0	32	0	CD109	intronic	NA
RCC_T1--GL	chr6:74518033	A	NA	52	0	52	36.808	8.105	0	0	0	48	0	CD109	intronic	NA
RCC_T1--1	chr6:84311168	C	NA	38	0	38	39.184	2.065	0	0	0	37	0	SNAP91	intronic	NA
RCC_T1--2	chr6:84311168	C	NA	117	0	117	37.838	5.734	0	0	0	113	0	SNAP91	intronic	NA
RCC_T1--3	chr6:84311168	C	NA	68	0	67	38.552	4.891	0	0	0	66	0	SNAP91	intronic	NA
RCC_T1--4	chr6:84311168	C	A	90	0.178	74	37.635	6.135	16	38.938	3.235	69	15	SNAP91	intronic	NA
RCC_T1--5	chr6:84311168	C	NA	125	0	125	38.848	3.443	0	0	0	123	0	SNAP91	intronic	NA
RCC_T1--6	chr6:84311168	C	NA	141	0	141	35.177	10.012	0	0	0	124	0	SNAP91	intronic	NA
RCC_T1--7	chr6:84311168	C	NA	100	0	100	38.430	4.515	0	0	0	96	0	SNAP91	intronic	NA
RCC_T1--GL	chr6:84311168	C	NA	101	0	101	37.446	6.927	0	0	0	95	0	SNAP91	intronic	NA
RCC_T1--1	chr6:90371119	T	A	70	0.071	65	38.815	2.680	5	38.600	2.074	64	5	MDN1	intronic	NA
RCC_T1--2	chr6:90371119	T	A	159	0.252	119	37.824	6.455	40	36.325	6.403	114	35	MDN1	intronic	NA
RCC_T1--3	chr6:90371119	T	A	76	0.171	63	37.127	5.381	13	38.231	3.982	57	12	MDN1	intronic	NA
RCC_T1--4	chr6:90371119	T	A	108	0.361	69	38.420	5.007	39	38.974	2.109	67	39	MDN1	intronic	NA
RCC_T1--5	chr6:90371119	T	A	93	0.280	67	37.507	7.382	26	37.385	4.272	62	22	MDN1	intronic	NA
RCC_T1--6	chr6:90371119	T	A	164	0.055	154	34.942	8.887	9	35.333	8.617	137	8	MDN1	intronic	NA
RCC_T1--7	chr6:90371119	T	A	90	0.233	69	38.304	5.416	21	38.524	2.040	66	21	MDN1	intronic	NA
RCC_T1--GL	chr6:90371119	T	NA	133	0	133	37.383	5.982	0	0	0	125	0	MDN1	intronic	NA
RCC_T1--1	chr7:11068333	G	A	128	0.312	87	38.356	4.185	40	38.425	2.417	84	39	PHF14	exonic	nonsynonymous_SNV
RCC_T1--2	chr7:11068333	G	A	359	0.462	191	37.398	6.302	166	35.783	7.756	180	152	PHF14	exonic	nonsynonymous_SNV
RCC_T1--3	chr7:11068333	G	A	169	0.491	86	37.651	5.128	83	38.217	2.719	81	81	PHF14	exonic	nonsynonymous_SNV
RCC_T1--4	chr7:11068333	G	A	172	0.006	170	37.118	7.195	1	40.000	0.000	156	1	PHF14	exonic	nonsynonymous_SNV
RCC_T1--5	chr7:11068333	G	A	251	0.378	156	36.705	8.197	95	36.874	6.778	142	92	PHF14	exonic	nonsynonymous_SNV
RCC_T1--6	chr7:11068333	G	A	311	0.119	273	34.190	9.802	37	35.514	7.194	232	32	PHF14	exonic	nonsynonymous_SNV
RCC_T1--7	chr7:11068333	G	A	307	0.550	136	37.816	5.045	169	36.402	7.855	129	153	PHF14	exonic	nonsynonymous_SNV
RCC_T1--GL	chr7:11068333	G	NA	202	0	202	36.381	7.502	0	0	0	186	0	PHF14	exonic	nonsynonymous_SNV
RCC_T1--1	chr7:121653122	A	G	85	0.059	80	37.500	7.525	5	40.000	0.000	75	5	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--2	chr7:121653122	A	G	290	0.207	230	37.296	7.055	60	37.333	6.459	214	55	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--3	chr7:121653122	A	G	124	0.177	102	37.480	7.302	22	37.636	8.063	96	21	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--4	chr7:121653122	A	G	191	0.288	136	37.985	6.568	55	38.745	5.437	131	53	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--5	chr7:121653122	A	G	188	0.261	138	38.449	4.158	49	38.204	5.708	135	48	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--6	chr7:121653122	A	G	208	0.091	189	35.439	7.995	19	38.895	2.355	165	19	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--7	chr7:121653122	A	G	254	0.476	133	37.361	6.293	121	37.570	7.361	121	114	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr7:121653122	A	NA	182	0	182	37.148	7.190	0	0	0	170	0	PTPRZ1	exonic	nonsynonymous_SNV
RCC_T1--1	chr7:121719764	T	C	70	0.100	62	37.855	5.575	7	33.571	8.619	59	5	AASS	exonic	synonymous_SNV
RCC_T1--2	chr7:121719764	T	C	258	0.186	210	37.033	6.251	48	38.583	4.130	195	46	AASS	exonic	synonymous_SNV
RCC_T1--3	chr7:121719764	T	C	108	0.139	93	39.011	2.474	15	37.067	9.743	92	14	AASS	exonic	synonymous_SNV
RCC_T1--4	chr7:121719764	T	C	156	0.308	108	37.389	6.904	48	38.146	5.676	101	47	AASS	exonic	synonymous_SNV
RCC_T1--5	chr7:121719764	T	C	197	0.228	152	37.559	6.653	45	36.200	8.815	143	40	AASS	exonic	synonymous_SNV
RCC_T1--6	chr7:121719764	T	C	214	0.070	199	34.709	9.634	15	36.133	9.672	173	14	AASS	exonic	synonymous_SNV
RCC_T1--7	chr7:121719764	T	C	217	0.207	172	37.110	7.005	45	36.422	7.873	161	40	AASS	exonic	synonymous_SNV
RCC_T1--GL	chr7:121719764	T	NA	186	0	184	37.342	6.967	0	0	0	172	0	AASS	exonic	synonymous_SNV
RCC_T1--1	chr7:127347661	C	NA	56	0	55	35.255	8.744	0	0	0	50	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--2	chr7:127347661	C	A	101	0.198	81	36.901	6.833	20	36.650	8.418	75	19	SND1	exonic	nonsynonymous_SNV
RCC_T1--3	chr7:127347661	C	NA	71	0	71	36.690	7.928	0	0	0	67	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--4	chr7:127347661	C	NA	92	0	92	36.848	7.184	0	0	0	87	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--5	chr7:127347661	C	NA	109	0	109	36.550	7.681	0	0	0	101	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--6	chr7:127347661	C	NA	156	0	156	33.449	9.847	0	0	0	130	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--7	chr7:127347661	C	NA	125	0	125	35.336	9.753	0	0	0	107	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr7:127347661	C	NA	109	0	106	34.425	8.518	0	0	0	89	0	SND1	exonic	nonsynonymous_SNV
RCC_T1--1	chr7:135292195	C	A	13	0.231	10	38.400	3.340	3	35.667	6.658	10	2	NUP205	intronic	NA
RCC_T1--2	chr7:135292195	C	NA	24	0	24	35.792	9.399	0	0	0	21	0	NUP205	intronic	NA
RCC_T1--3	chr7:135292195	C	NA	21	0	21	38.190	2.977	0	0	0	20	0	NUP205	intronic	NA
RCC_T1--4	chr7:135292195	C	NA	27	0	27	37.630	4.757	0	0	0	25	0	NUP205	intronic	NA
RCC_T1--5	chr7:135292195	C	NA	32	0	32	38.250	6.787	0	0	0	31	0	NUP205	intronic	NA
RCC_T1--6	chr7:135292195	C	NA	43	0	42	33.833	10.766	0	0	0	36	0	NUP205	intronic	NA
RCC_T1--7	chr7:135292195	C	NA	33	0	33	37.455	3.809	0	0	0	32	0	NUP205	intronic	NA
RCC_T1--GL	chr7:135292195	C	NA	33	0	33	37.333	3.568	0	0	0	31	0	NUP205	intronic	NA
RCC_T1--1	chr7:2698624	T	C	75	0.160	62	34.306	8.734	12	38.750	1.215	56	12	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--2	chr7:2698624	T	C	198	0.172	161	29.634	12.033	34	26.382	16.125	108	24	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--3	chr7:2698624	T	C	114	0.132	99	33.828	9.756	15	30.600	12.563	83	11	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--4	chr7:2698624	T	C	82	0.329	54	30.667	12.932	27	34.444	9.974	40	24	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--5	chr7:2698624	T	C	86	0.116	76	33.487	10.214	10	33.300	11.662	64	9	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--6	chr7:2698624	T	C	112	0.080	98	25.765	13.939	9	36.222	2.048	55	9	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--7	chr7:2698624	T	C	150	0.167	125	31.384	12.128	25	33.360	10.352	92	21	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--GL	chr7:2698624	T	NA	112	0	109	27.596	13.627	0	0	0	69	0	TTYH3	exonic	nonsynonymous_SNV
RCC_T1--1	chr7:36370771	A	G	18	0.111	16	38.875	2.500	2	40.000	0.000	16	2	KIAA0895	intronic	NA
RCC_T1--2	chr7:36370771	A	G	48	0.146	41	37.512	6.357	7	39.143	1.864	39	7	KIAA0895	intronic	NA
RCC_T1--3	chr7:36370771	A	G	25	0.160	21	37.810	8.286	4	39.750	0.500	20	4	KIAA0895	intronic	NA
RCC_T1--4	chr7:36370771	A	G	27	0.222	21	39.000	2.345	6	39.333	1.633	21	6	KIAA0895	intronic	NA
RCC_T1--5	chr7:36370771	A	G	53	0.113	47	37.936	6.222	6	37.333	6.532	45	5	KIAA0895	intronic	NA
RCC_T1--6	chr7:36370771	A	G	38	0.105	34	34.088	11.274	4	38.750	2.500	30	4	KIAA0895	intronic	NA
RCC_T1--7	chr7:36370771	A	G	33	0.091	30	38.733	2.664	3	40.000	0.000	29	3	KIAA0895	intronic	NA
RCC_T1--GL	chr7:36370771	A	NA	43	0	43	37.047	8.332	0	0	0	40	0	KIAA0895	intronic	NA
RCC_T1--1	chr7:36374719	A	T	85	0.059	80	38.562	2.898	5	38.600	3.130	79	5	KIAA0895	exonic	synonymous_SNV
RCC_T1--2	chr7:36374719	A	T	242	0.153	205	37.220	6.486	37	35.378	7.980	192	32	KIAA0895	exonic	synonymous_SNV
RCC_T1--3	chr7:36374719	A	T	98	0.143	84	35.964	8.784	14	32.786	13.296	77	12	KIAA0895	exonic	synonymous_SNV
RCC_T1--4	chr7:36374719	A	T	118	0.347	77	35.000	11.023	41	37.171	6.099	67	38	KIAA0895	exonic	synonymous_SNV
RCC_T1--5	chr7:36374719	A	T	169	0.136	146	36.719	7.823	23	37.783	3.861	134	22	KIAA0895	exonic	synonymous_SNV
RCC_T1--6	chr7:36374719	A	T	186	0.091	168	34.274	9.386	17	31.588	12.470	142	13	KIAA0895	exonic	synonymous_SNV
RCC_T1--7	chr7:36374719	A	T	146	0.130	127	36.039	8.271	19	38.421	2.317	112	19	KIAA0895	exonic	synonymous_SNV
RCC_T1--GL	chr7:36374719	A	NA	135	0	135	35.541	7.413	0	0	0	120	0	KIAA0895	exonic	synonymous_SNV
RCC_T1--1	chr7:73151579	G	A	23	0.043	22	36.364	5.447	1	35.000	0.000	19	1	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--2	chr7:73151579	G	A	58	0.276	41	33.293	10.558	16	33.625	9.337	35	13	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--3	chr7:73151579	G	A	40	0.100	36	36.611	6.758	4	38.500	1.915	34	4	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--4	chr7:73151579	G	NA	44	0	44	35.705	7.575	0	0	0	36	0	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--5	chr7:73151579	G	A	54	0.204	43	35.535	8.929	11	31.364	11.174	39	8	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--6	chr7:73151579	G	A	54	0.111	48	34.188	8.727	6	37.000	2.828	39	6	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--7	chr7:73151579	G	A	44	0.273	32	35.219	9.147	12	34.167	10.870	30	10	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--GL	chr7:73151579	G	NA	45	0	45	33.511	9.057	0	0	0	36	0	ABHD11	exonic	nonsynonymous_SNV
RCC_T1--1	chr8:105361447	G	NA	42	0	42	38.667	2.216	0	0	0	42	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--2	chr8:105361447	G	NA	130	0	129	36.140	6.605	0	0	0	118	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--3	chr8:105361447	G	NA	74	0	74	36.662	7.743	0	0	0	69	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--4	chr8:105361447	G	NA	131	0	130	36.462	7.863	0	0	0	119	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--5	chr8:105361447	G	NA	134	0	134	37.060	5.977	0	0	0	126	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--6	chr8:105361447	G	NA	123	0	121	32.496	11.853	0	0	0	95	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--7	chr8:105361447	G	A	107	0.224	83	36.627	7.977	24	36.417	5.258	78	21	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--GL	chr8:105361447	G	NA	107	0	106	34.500	8.952	0	0	0	90	0	DCSTAMP	exonic	nonsynonymous_SNV
RCC_T1--1	chr8:11213598	G	NA	28	0	28	38.714	1.782	0	0	0	28	0	TDH	ncRNA_intronic	NA
RCC_T1--2	chr8:11213598	G	C	31	0.226	24	38.458	3.050	7	38.857	2.610	23	7	TDH	ncRNA_intronic	NA
RCC_T1--3	chr8:11213598	G	C	26	0.115	23	38.478	2.352	3	39.667	0.577	23	3	TDH	ncRNA_intronic	NA
RCC_T1--4	chr8:11213598	G	C	35	0.057	33	36.788	6.735	2	39.500	0.707	30	2	TDH	ncRNA_intronic	NA
RCC_T1--5	chr8:11213598	G	C	24	0.042	23	37.565	5.375	1	38.000	0.000	21	1	TDH	ncRNA_intronic	NA
RCC_T1--6	chr8:11213598	G	C	38	0.053	35	33.086	9.805	2	39.500	0.707	28	2	TDH	ncRNA_intronic	NA
RCC_T1--7	chr8:11213598	G	C	32	0.062	30	37.800	7.078	2	39.500	0.707	29	2	TDH	ncRNA_intronic	NA
RCC_T1--GL	chr8:11213598	G	NA	39	0	39	35.795	6.670	0	0	0	36	0	TDH	ncRNA_intronic	NA
RCC_T1--1	chr8:11213601	C	T	29	0.034	28	39.464	0.793	1	40.000	0.000	28	1	TDH	ncRNA_intronic	NA
RCC_T1--2	chr8:11213601	C	T	33	0.303	23	37.957	3.624	10	38.000	2.906	21	10	TDH	ncRNA_intronic	NA
RCC_T1--3	chr8:11213601	C	T	24	0.125	21	38.952	1.802	3	39.667	0.577	21	3	TDH	ncRNA_intronic	NA
RCC_T1--4	chr8:11213601	C	T	35	0.086	32	36.875	6.277	3	39.000	1.732	29	3	TDH	ncRNA_intronic	NA
RCC_T1--5	chr8:11213601	C	T	26	0.115	23	38.217	3.789	3	36.333	5.508	22	3	TDH	ncRNA_intronic	NA
RCC_T1--6	chr8:11213601	C	T	41	0.098	37	34.000	9.321	4	33.500	11.030	31	3	TDH	ncRNA_intronic	NA
RCC_T1--7	chr8:11213601	C	T	31	0.065	29	38.241	7.029	2	38.000	1.414	28	2	TDH	ncRNA_intronic	NA
RCC_T1--GL	chr8:11213601	C	NA	40	0	39	37.846	6.293	0	0	0	38	0	TDH	ncRNA_intronic	NA
RCC_T1--1	chr8:27634717	C	G	21	0.190	17	37.471	6.472	4	40.000	0.000	15	4	ESCO2	intronic	NA
RCC_T1--2	chr8:27634717	C	NA	61	0	61	36.066	9.221	0	0	0	55	0	ESCO2	intronic	NA
RCC_T1--3	chr8:27634717	C	NA	15	0	15	37.133	9.753	0	0	0	14	0	ESCO2	intronic	NA
RCC_T1--4	chr8:27634717	C	NA	40	0	40	38.275	3.870	0	0	0	38	0	ESCO2	intronic	NA
RCC_T1--5	chr8:27634717	C	NA	37	0	37	38.865	2.188	0	0	0	37	0	ESCO2	intronic	NA
RCC_T1--6	chr8:27634717	C	NA	70	0	69	36.783	6.345	0	0	0	64	0	ESCO2	intronic	NA
RCC_T1--7	chr8:27634717	C	NA	24	0	24	37.167	8.170	0	0	0	22	0	ESCO2	intronic	NA
RCC_T1--GL	chr8:27634717	C	NA	40	0	40	37.500	4.788	0	0	0	37	0	ESCO2	intronic	NA
RCC_T1--1	chr8:61850788	A	G	36	0.194	29	39.103	1.739	7	39.143	1.864	29	7	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--2	chr8:61850788	A	G	114	0.211	90	38.211	4.639	24	34.875	10.580	88	21	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--3	chr8:61850788	A	G	61	0.164	51	39.275	1.981	10	39.400	0.843	50	10	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--4	chr8:61850788	A	G	92	0.283	66	37.167	7.456	26	37.885	3.024	62	26	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--5	chr8:61850788	A	G	96	0.167	80	37.962	4.877	16	38.688	2.213	77	16	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--6	chr8:61850788	A	G	118	0.068	110	35.064	8.733	8	37.625	3.068	98	8	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--7	chr8:61850788	A	G	78	0.333	52	35.327	8.719	26	38.346	3.588	46	25	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--GL	chr8:61850788	A	NA	79	0	79	37.759	4.865	0	0	0	76	0	CHD7(dist=70202),LOC100130298(dist=27892)	intergenic	NA
RCC_T1--1	chr8:68066256	A	C	28	0.071	26	39.654	0.629	2	39.500	0.707	26	2	CSPP1	intronic	NA
RCC_T1--2	chr8:68066256	A	C	97	0.216	76	36.605	8.201	21	38.810	2.400	69	21	CSPP1	intronic	NA
RCC_T1--3	chr8:68066256	A	C	51	0.235	39	38.564	2.644	12	39.750	0.866	38	12	CSPP1	intronic	NA
RCC_T1--4	chr8:68066256	A	C	59	0.085	54	37.000	7.506	5	39.000	2.236	50	5	CSPP1	intronic	NA
RCC_T1--5	chr8:68066256	A	C	66	0.303	46	38.652	2.540	20	38.500	3.547	45	19	CSPP1	intronic	NA
RCC_T1--6	chr8:68066256	A	C	99	0.051	94	35.181	9.260	5	38.200	2.490	82	5	CSPP1	intronic	NA
RCC_T1--7	chr8:68066256	A	C	40	0.250	30	36.500	9.705	10	38.500	2.593	27	10	CSPP1	intronic	NA
RCC_T1--GL	chr8:68066256	A	NA	74	0	74	35.662	9.121	0	0	0	65	0	CSPP1	intronic	NA
RCC_T1--1	chr9:117488	A	G	74	0.027	72	32.083	8.160	2	28.500	16.263	48	1	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--2	chr9:117488	A	G	82	0.122	71	24.930	12.932	10	28.300	10.552	32	5	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--3	chr9:117488	A	NA	50	0	45	29.822	11.240	0	0	0	30	0	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--4	chr9:117488	A	G	63	0.032	61	30.984	10.047	2	33.500	9.192	44	1	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--5	chr9:117488	A	G	43	0.233	32	27.781	12.891	10	34.600	11.815	19	9	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--6	chr9:117488	A	NA	70	0	65	26.738	11.390	0	0	0	33	0	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--7	chr9:117488	A	G	59	0.136	51	31.039	8.588	8	27.625	16.370	33	5	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--GL	chr9:117488	A	NA	120	0	115	28.722	11.032	0	0	0	72	0	FOXD4	exonic	nonsynonymous_SNV
RCC_T1--1	chr9:136629276	G	A	15	0.267	11	38.182	5.382	4	39.500	0.577	10	4	VAV2	intronic	NA
RCC_T1--2	chr9:136629276	G	A	35	0.057	33	37.364	6.972	2	40.000	0.000	31	2	VAV2	intronic	NA
RCC_T1--3	chr9:136629276	G	A	22	0.045	21	38.952	2.202	1	40.000	0.000	21	1	VAV2	intronic	NA
RCC_T1--4	chr9:136629276	G	A	39	0.051	37	39.216	1.228	2	39.500	0.707	37	2	VAV2	intronic	NA
RCC_T1--5	chr9:136629276	G	A	52	0.154	44	37.568	6.561	8	36.250	6.777	42	6	VAV2	intronic	NA
RCC_T1--6	chr9:136629276	G	A	59	0.102	53	35.925	7.802	6	37.667	2.875	48	6	VAV2	intronic	NA
RCC_T1--7	chr9:136629276	G	A	32	0.062	30	38.533	2.529	2	37.000	1.414	30	2	VAV2	intronic	NA
RCC_T1--GL	chr9:136629276	G	NA	33	0	33	36.364	5.516	0	0	0	29	0	VAV2	intronic	NA
RCC_T1--1	chr9:136629277	T	A	15	0.267	11	37.636	5.025	4	39.750	0.500	10	4	VAV2	intronic	NA
RCC_T1--2	chr9:136629277	T	A	35	0.029	34	37.412	4.279	1	40.000	0.000	32	1	VAV2	intronic	NA
RCC_T1--3	chr9:136629277	T	NA	21	0	20	38.750	2.552	0	0	0	20	0	VAV2	intronic	NA
RCC_T1--4	chr9:136629277	T	A	38	0.026	37	38.703	2.209	1	40.000	0.000	36	1	VAV2	intronic	NA
RCC_T1--5	chr9:136629277	T	A	47	0.064	44	36.977	7.158	3	39.667	0.577	41	3	VAV2	intronic	NA
RCC_T1--6	chr9:136629277	T	A	57	0.053	54	34.963	7.802	3	37.667	1.528	47	3	VAV2	intronic	NA
RCC_T1--7	chr9:136629277	T	A	31	0.032	30	38.167	2.902	1	38.000	0.000	29	1	VAV2	intronic	NA
RCC_T1--GL	chr9:136629277	T	NA	34	0	34	36.029	5.797	0	0	0	31	0	VAV2	intronic	NA
RCC_T1--1	chr9:137660199	A	T	22	0.091	20	35.500	8.519	2	37.500	3.536	18	2	COL5A1	intronic	NA
RCC_T1--2	chr9:137660199	A	T	46	0.239	35	35.086	5.628	11	36.182	5.793	29	10	COL5A1	intronic	NA
RCC_T1--3	chr9:137660199	A	T	30	0.200	24	33.625	7.569	6	38.500	1.871	22	6	COL5A1	intronic	NA
RCC_T1--4	chr9:137660199	A	T	52	0.308	35	33.343	10.505	16	35.188	8.018	30	13	COL5A1	intronic	NA
RCC_T1--5	chr9:137660199	A	T	60	0.533	28	34.643	8.292	32	34.125	7.745	23	27	COL5A1	intronic	NA
RCC_T1--6	chr9:137660199	A	T	64	0.047	60	32.617	7.861	3	31.000	7.000	52	2	COL5A1	intronic	NA
RCC_T1--7	chr9:137660199	A	T	45	0.622	17	33.118	10.570	28	36.893	7.410	14	26	COL5A1	intronic	NA
RCC_T1--GL	chr9:137660199	A	NA	77	0	75	33.947	7.403	0	0	0	64	0	COL5A1	intronic	NA
RCC_T1--1	chr9:140084292	C	A	17	0.235	13	38.308	2.359	4	37.500	2.082	13	4	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--2	chr9:140084292	C	A	38	0.237	29	36.586	7.194	9	36.000	3.775	26	9	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--3	chr9:140084292	C	A	19	0.211	15	38.267	2.764	4	39.000	1.414	15	4	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--4	chr9:140084292	C	A	50	0.140	43	37.233	6.286	7	35.571	4.928	41	6	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--5	chr9:140084292	C	A	40	0.525	19	36.684	4.177	21	37.810	3.188	18	21	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--6	chr9:140084292	C	A	46	0.065	42	30.738	13.619	3	21.667	17.616	32	1	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--7	chr9:140084292	C	A	35	0.457	19	35.000	8.769	16	38.750	1.915	17	16	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr9:140084292	C	NA	34	0	33	36.545	3.969	0	0	0	32	0	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--1	chr9:140084293	T	A	17	0.235	13	37.462	3.755	4	38.000	3.367	12	4	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--2	chr9:140084293	T	A	39	0.231	30	35.400	8.791	9	36.667	3.905	27	8	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--3	chr9:140084293	T	A	20	0.200	16	38.500	2.708	4	37.000	3.367	15	4	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--4	chr9:140084293	T	A	50	0.100	43	35.419	8.718	5	34.800	3.564	38	5	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--5	chr9:140084293	T	A	41	0.512	20	36.200	4.384	21	37.238	2.965	17	21	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--6	chr9:140084293	T	A	45	0.067	41	29.244	13.561	3	21.333	17.474	29	1	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--7	chr9:140084293	T	A	36	0.444	19	34.789	8.854	16	38.188	2.167	16	16	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr9:140084293	T	NA	34	0	33	35.152	4.848	0	0	0	28	0	SSNA1	exonic	nonsynonymous_SNV
RCC_T1--1	chr9:32487509	A	NA	37	0	37	38.108	3.806	0	0	0	36	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--2	chr9:32487509	A	T	87	0.011	86	36.163	8.194	1	40.000	0.000	77	1	DDX58	exonic	nonsynonymous_SNV
RCC_T1--3	chr9:32487509	A	NA	47	0	46	34.261	11.760	0	0	0	40	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--4	chr9:32487509	A	T	95	0.295	66	37.152	5.978	28	39.000	2.228	62	27	DDX58	exonic	nonsynonymous_SNV
RCC_T1--5	chr9:32487509	A	NA	101	0	100	37.900	4.354	0	0	0	98	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--6	chr9:32487509	A	NA	90	0	88	33.307	9.440	0	0	0	68	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--7	chr9:32487509	A	NA	82	0	82	36.439	7.622	0	0	0	74	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--GL	chr9:32487509	A	NA	103	0	103	32.738	9.894	0	0	0	84	0	DDX58	exonic	nonsynonymous_SNV
RCC_T1--1	chr9:36923437	G	A	21	0.095	19	37.421	3.626	2	21.000	26.870	19	1	PAX5	exonic	synonymous_SNV
RCC_T1--2	chr9:36923437	G	A	59	0.356	38	32.395	11.863	21	33.476	10.088	30	17	PAX5	exonic	synonymous_SNV
RCC_T1--3	chr9:36923437	G	A	30	0.200	23	32.435	12.471	6	33.500	3.507	18	6	PAX5	exonic	synonymous_SNV
RCC_T1--4	chr9:36923437	G	A	77	0.104	69	31.928	11.585	8	31.500	12.862	54	5	PAX5	exonic	synonymous_SNV
RCC_T1--5	chr9:36923437	G	A	59	0.525	27	32.889	10.977	31	32.806	10.725	22	25	PAX5	exonic	synonymous_SNV
RCC_T1--6	chr9:36923437	G	A	46	0.130	38	28.974	14.483	6	32.167	10.458	29	5	PAX5	exonic	synonymous_SNV
RCC_T1--7	chr9:36923437	G	A	67	0.448	37	32.189	10.208	30	33.033	10.217	30	24	PAX5	exonic	synonymous_SNV
RCC_T1--GL	chr9:36923437	G	NA	56	0	54	32.722	10.395	0	0	0	44	0	PAX5	exonic	synonymous_SNV
RCC_T1--1	chr9:406804	A	NA	18	0	18	38.500	2.036	0	0	0	18	0	DOCK8	intronic	NA
RCC_T1--2	chr9:406804	A	G	20	0.250	15	38.000	3.606	5	39.600	0.894	15	5	DOCK8	intronic	NA
RCC_T1--3	chr9:406804	A	G	16	0.062	15	37.533	4.438	1	40.000	0.000	13	1	DOCK8	intronic	NA
RCC_T1--4	chr9:406804	A	G	45	0.089	41	38.098	6.082	4	38.500	2.380	40	4	DOCK8	intronic	NA
RCC_T1--5	chr9:406804	A	G	51	0.078	47	38.702	2.330	4	39.500	1.000	47	4	DOCK8	intronic	NA
RCC_T1--6	chr9:406804	A	G	54	0.037	52	36.654	5.739	2	37.500	3.536	49	2	DOCK8	intronic	NA
RCC_T1--7	chr9:406804	A	G	42	0.024	41	37.024	8.305	1	37.000	0.000	39	1	DOCK8	intronic	NA
RCC_T1--GL	chr9:406804	A	NA	35	0	35	37.114	6.681	0	0	0	34	0	DOCK8	intronic	NA
RCC_T1--1	chr9:88396212	C	T	31	0.161	26	39.500	1.068	5	40.000	0.000	26	5	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--2	chr9:88396212	C	T	72	0.181	59	37.322	7.335	13	37.000	4.983	56	12	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--3	chr9:88396212	C	T	33	0.242	25	37.800	7.610	8	39.125	1.808	24	8	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--4	chr9:88396212	C	T	71	0.085	65	38.800	2.353	6	35.000	6.542	63	5	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--5	chr9:88396212	C	T	110	0.345	72	37.431	5.835	38	38.921	2.161	66	38	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--6	chr9:88396212	C	T	83	0.084	76	36.026	7.727	7	25.286	16.810	69	4	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--7	chr9:88396212	C	T	69	0.464	37	37.297	6.724	32	34.750	8.758	35	26	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--GL	chr9:88396212	C	NA	102	0	102	36.843	7.045	0	0	0	94	0	AGTPBP1(dist=39268),LOC389765(dist=24705)	intergenic	NA
RCC_T1--1	chr9:90317948	G	NA	19	0	19	38.105	3.446	0	0	0	18	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--2	chr9:90317948	G	NA	35	0	35	33.314	11.196	0	0	0	29	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--3	chr9:90317948	G	NA	36	0	35	37.457	3.616	0	0	0	34	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--4	chr9:90317948	G	C	56	0.268	40	34.225	9.547	15	38.267	2.154	35	15	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--5	chr9:90317948	G	NA	64	0	63	34.222	8.959	0	0	0	54	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--6	chr9:90317948	G	NA	62	0	62	33.694	8.011	0	0	0	54	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--7	chr9:90317948	G	NA	62	0	62	35.548	7.496	0	0	0	55	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--GL	chr9:90317948	G	NA	58	0	58	32.914	8.678	0	0	0	48	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T1--1	chrM:10087	N	NA	37	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--2	chrM:10087	N	C	162	0.019	0	0.000	0.000	3	35.333	5.508	0	2	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--3	chrM:10087	N	C	110	0.100	0	0.000	0.000	11	35.000	5.099	0	10	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--4	chrM:10087	N	NA	200	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--5	chrM:10087	N	NA	90	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--6	chrM:10087	N	C	166	0.006	0	0.000	0.000	1	34.000	0.000	0	1	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--7	chrM:10087	N	C	270	0.063	0	0.000	0.000	17	34.529	6.765	0	14	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--GL	chrM:10087	N	NA	77	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--1	chrM:7409	N	G	16	0.562	0	0.000	0.000	9	38.111	3.018	0	9	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--2	chrM:7409	N	G	61	0.738	0	0.000	0.000	45	36.378	7.907	0	43	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--3	chrM:7409	N	G	63	0.714	0	0.000	0.000	45	35.578	8.387	0	42	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--4	chrM:7409	N	G	87	0.069	0	0.000	0.000	6	38.333	1.033	0	6	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--5	chrM:7409	N	NA	26	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--6	chrM:7409	N	G	85	0.071	0	0.000	0.000	6	30.833	14.811	0	4	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--7	chrM:7409	N	G	114	0.868	0	0.000	0.000	99	35.263	9.383	0	86	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--GL	chrM:7409	N	NA	26	0	0	0.000	0.000	0	0	0	0	0	NONE(dist=NONE),NONE(dist=NONE)	intergenic	NA
RCC_T1--1	chrY:28773167	C	NA	20	0	20	38.650	3.066	0	0	0	19	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--2	chrY:28773167	C	NA	25	0	25	34.560	7.864	0	0	0	22	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--3	chrY:28773167	C	NA	17	0	17	38.118	2.571	0	0	0	17	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--4	chrY:28773167	C	T	10	0.300	7	38.857	1.215	3	39.000	0.000	7	3	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--5	chrY:28773167	C	NA	18	0	18	36.444	4.260	0	0	0	17	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--6	chrY:28773167	C	NA	41	0	41	34.171	10.358	0	0	0	34	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--7	chrY:28773167	C	NA	21	0	21	34.619	11.461	0	0	0	18	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T1--GL	chrY:28773167	C	NA	46	0	46	34.739	5.760	0	0	0	37	0	TTTY3B(dist=893632),NONE(dist=NONE)	intergenic	NA
RCC_T2--1	chr10:115607083	T	NA	65	0	65	38.415	3.450	0	0	0	63	0	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--2	chr10:115607083	T	G	73	0.288	52	39.019	2.227	21	39.381	1.830	52	21	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--3	chr10:115607083	T	NA	59	0	59	37.695	3.659	0	0	0	58	0	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--4	chr10:115607083	T	G	42	0.119	37	38.514	2.578	5	41.000	0.000	37	5	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--5	chr10:115607083	T	NA	60	0	59	38.729	2.605	0	0	0	59	0	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--6	chr10:115607083	T	NA	33	0	32	36.250	6.730	0	0	0	28	0	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--GL	chr10:115607083	T	NA	48	0	48	38.979	2.329	0	0	0	48	0	DCLRE1A	exonic	nonsynonymous_SNV
RCC_T2--1	chr10:27702413	G	NA	37	0	37	34.378	6.881	0	0	0	32	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--2	chr10:27702413	G	NA	37	0	36	35.861	3.650	0	0	0	34	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--3	chr10:27702413	G	A	32	0.281	23	35.522	3.287	9	33.889	4.910	22	8	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--4	chr10:27702413	G	NA	30	0	30	35.733	4.502	0	0	0	29	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--5	chr10:27702413	G	NA	39	0	39	36.179	3.892	0	0	0	37	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--6	chr10:27702413	G	NA	46	0	45	34.356	4.437	0	0	0	42	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--GL	chr10:27702413	G	NA	42	0	42	35.786	5.354	0	0	0	39	0	PTCHD3	exonic	nonsynonymous_SNV
RCC_T2--1	chr10:31799718	T	G	89	0.112	79	39.658	2.281	10	40.300	1.337	79	10	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--2	chr10:31799718	T	G	112	0.205	89	39.483	2.760	23	38.826	2.839	88	23	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--3	chr10:31799718	T	G	92	0.228	71	39.479	2.396	21	38.381	3.339	71	21	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--4	chr10:31799718	T	G	82	0.146	70	38.986	3.449	12	40.417	1.165	68	12	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--5	chr10:31799718	T	G	97	0.186	78	39.295	4.046	18	40.389	1.335	77	18	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--6	chr10:31799718	T	G	48	0.146	41	39.390	1.935	7	38.714	2.984	41	7	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--GL	chr10:31799718	T	NA	65	0	65	39.646	2.321	0	0	0	65	0	ZEB1	exonic	nonsynonymous_SNV
RCC_T2--1	chr10:52445116	C	A	124	0.113	110	37.055	6.101	14	38.071	2.731	103	14	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--2	chr10:52445116	C	A	127	0.291	90	38.144	3.631	37	37.649	3.683	87	36	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--3	chr10:52445116	C	A	82	0.061	77	37.325	5.884	5	25.800	17.297	75	3	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--4	chr10:52445116	C	A	84	0.155	71	38.338	2.957	13	33.615	9.033	70	11	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--5	chr10:52445116	C	A	113	0.195	91	37.989	4.197	22	37.045	4.685	88	20	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--6	chr10:52445116	C	A	152	0.099	136	38.191	4.856	15	38.200	2.833	131	15	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--GL	chr10:52445116	C	NA	79	0	79	38.797	2.954	0	0	0	78	0	SGMS1(dist=61379),ASAH2B(dist=54572)	intergenic	NA
RCC_T2--1	chr10:71002931	G	A	68	0.176	56	39.571	2.303	12	39.250	2.221	56	12	HKDC1	intronic	NA
RCC_T2--2	chr10:71002931	G	A	53	0.302	37	38.351	3.102	16	38.750	3.396	37	16	HKDC1	intronic	NA
RCC_T2--3	chr10:71002931	G	A	38	0.289	27	38.148	6.218	11	38.727	3.797	25	10	HKDC1	intronic	NA
RCC_T2--4	chr10:71002931	G	A	63	0.159	52	38.750	2.841	10	39.000	1.944	51	10	HKDC1	intronic	NA
RCC_T2--5	chr10:71002931	G	A	62	0.274	45	39.200	2.455	17	37.588	2.671	45	17	HKDC1	intronic	NA
RCC_T2--6	chr10:71002931	G	A	87	0.092	79	37.975	5.274	8	40.500	0.756	76	8	HKDC1	intronic	NA
RCC_T2--GL	chr10:71002931	G	NA	64	0	64	39.484	2.350	0	0	0	64	0	HKDC1	intronic	NA
RCC_T2--1	chr11:108004860	A	G	33	0.121	29	38.552	3.158	4	39.250	3.500	29	4	ACAT1	intronic	NA
RCC_T2--2	chr11:108004860	A	G	36	0.333	24	37.667	2.973	12	37.750	4.575	24	11	ACAT1	intronic	NA
RCC_T2--3	chr11:108004860	A	G	40	0.300	28	38.750	3.111	12	39.167	3.157	27	12	ACAT1	intronic	NA
RCC_T2--4	chr11:108004860	A	G	33	0.152	28	38.571	2.617	5	38.400	2.966	28	5	ACAT1	intronic	NA
RCC_T2--5	chr11:108004860	A	G	41	0.098	37	37.595	3.685	4	35.000	11.343	35	3	ACAT1	intronic	NA
RCC_T2--6	chr11:108004860	A	G	17	0.118	15	39.133	2.416	2	32.000	12.728	15	1	ACAT1	intronic	NA
RCC_T2--GL	chr11:108004860	A	NA	34	0	34	38.471	2.688	0	0	0	34	0	ACAT1	intronic	NA
RCC_T2--1	chr11:118633890	A	G	86	0.116	76	38.882	3.378	10	38.100	4.383	75	9	DDX6	intronic	NA
RCC_T2--2	chr11:118633890	A	G	64	0.156	54	38.981	3.062	10	39.800	1.476	53	10	DDX6	intronic	NA
RCC_T2--3	chr11:118633890	A	G	37	0.081	34	39.647	1.873	3	38.000	3.606	34	3	DDX6	intronic	NA
RCC_T2--4	chr11:118633890	A	G	40	0.150	34	38.706	2.845	6	40.000	1.673	34	6	DDX6	intronic	NA
RCC_T2--5	chr11:118633890	A	G	69	0.159	58	37.638	4.958	11	36.909	4.437	56	10	DDX6	intronic	NA
RCC_T2--6	chr11:118633890	A	G	34	0.265	25	39.080	3.239	9	40.111	2.028	24	9	DDX6	intronic	NA
RCC_T2--GL	chr11:118633890	A	NA	51	0	50	38.160	4.372	0	0	0	49	0	DDX6	intronic	NA
RCC_T2--1	chr11:49071449	C	NA	72	0	71	36.113	4.170	0	0	0	66	0	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--2	chr11:49071449	C	T	60	0.300	42	36.976	3.751	18	36.556	3.034	41	18	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--3	chr11:49071449	C	T	50	0.040	47	35.468	6.704	2	41.000	0.000	43	2	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--4	chr11:49071449	C	T	50	0.160	42	37.333	3.058	8	34.750	5.574	41	7	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--5	chr11:49071449	C	T	58	0.121	51	36.255	5.172	7	37.429	2.149	48	7	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--6	chr11:49071449	C	T	128	0.039	123	36.366	4.191	5	29.800	13.971	116	4	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--GL	chr11:49071449	C	NA	49	0	47	36.936	5.419	0	0	0	45	0	TRIM49B(dist=11920),TRIM64C(dist=3817)	intergenic	NA
RCC_T2--1	chr1:152286668	G	NA	238	0	238	39.038	3.093	0	0	0	235	0	FLG	exonic	nonsynonymous_SNV
RCC_T2--2	chr1:152286668	G	T	248	0.222	193	38.979	3.516	55	39.982	1.639	189	55	FLG	exonic	nonsynonymous_SNV
RCC_T2--3	chr1:152286668	G	T	229	0.009	227	39.159	3.359	2	24.000	24.042	223	1	FLG	exonic	nonsynonymous_SNV
RCC_T2--4	chr1:152286668	G	T	203	0.128	177	39.198	3.354	26	39.577	2.043	175	26	FLG	exonic	nonsynonymous_SNV
RCC_T2--5	chr1:152286668	G	T	174	0.144	148	39.608	2.341	25	39.080	2.361	147	25	FLG	exonic	nonsynonymous_SNV
RCC_T2--6	chr1:152286668	G	T	81	0.185	66	39.258	2.507	15	36.867	7.220	65	13	FLG	exonic	nonsynonymous_SNV
RCC_T2--GL	chr1:152286668	G	NA	153	0	152	39.092	2.901	0	0	0	149	0	FLG	exonic	nonsynonymous_SNV
RCC_T2--1	chr11:64511476	C	A	42	0.214	33	35.636	4.729	9	35.111	3.790	32	8	RASGRP2	UTR5	NA
RCC_T2--2	chr11:64511476	C	A	42	0.214	33	37.939	2.536	9	32.667	9.721	33	7	RASGRP2	UTR5	NA
RCC_T2--3	chr11:64511476	C	A	35	0.114	31	37.065	3.714	4	35.750	3.403	30	4	RASGRP2	UTR5	NA
RCC_T2--4	chr11:64511476	C	A	29	0.310	20	37.300	4.889	9	36.222	3.420	19	9	RASGRP2	UTR5	NA
RCC_T2--5	chr11:64511476	C	A	40	0.075	37	36.784	3.668	3	30.333	6.110	35	1	RASGRP2	UTR5	NA
RCC_T2--6	chr11:64511476	C	A	90	0.100	81	37.753	2.862	9	38.444	2.920	81	9	RASGRP2	UTR5	NA
RCC_T2--GL	chr11:64511476	C	NA	39	0	39	36.615	4.056	0	0	0	37	0	RASGRP2	UTR5	NA
RCC_T2--1	chr11:94730518	A	G	123	0.122	108	38.954	3.873	15	39.400	1.682	106	15	KDM4D	UTR5	NA
RCC_T2--2	chr11:94730518	A	G	80	0.287	57	39.105	2.554	23	38.826	3.366	57	22	KDM4D	UTR5	NA
RCC_T2--3	chr11:94730518	A	G	91	0.022	88	39.670	2.175	2	41.000	0.000	88	2	KDM4D	UTR5	NA
RCC_T2--4	chr11:94730518	A	G	78	0.167	65	39.492	2.272	13	38.923	3.639	65	13	KDM4D	UTR5	NA
RCC_T2--5	chr11:94730518	A	G	89	0.101	80	38.763	3.501	9	39.667	1.500	78	9	KDM4D	UTR5	NA
RCC_T2--6	chr11:94730518	A	G	48	0.104	43	39.047	3.792	5	40.200	0.837	42	5	KDM4D	UTR5	NA
RCC_T2--GL	chr11:94730518	A	NA	54	0	54	39.019	2.943	0	0	0	54	0	KDM4D	UTR5	NA
RCC_T2--1	chr1:196758794	C	T	41	0.171	34	39.735	2.136	7	40.286	0.756	34	7	CFHR3	intronic	NA
RCC_T2--2	chr1:196758794	C	T	34	0.176	28	40.000	1.491	6	40.167	2.041	28	6	CFHR3	intronic	NA
RCC_T2--3	chr1:196758794	C	T	51	0.020	50	40.300	1.418	1	41.000	0.000	50	1	CFHR3	intronic	NA
RCC_T2--4	chr1:196758794	C	T	57	0.070	53	39.528	3.232	4	41.000	0.000	52	4	CFHR3	intronic	NA
RCC_T2--5	chr1:196758794	C	T	35	0.171	29	39.621	2.094	6	37.500	6.804	29	5	CFHR3	intronic	NA
RCC_T2--6	chr1:196758794	C	T	19	0.053	18	39.500	3.092	1	39.000	0.000	18	1	CFHR3	intronic	NA
RCC_T2--GL	chr1:196758794	C	NA	35	0	35	40.371	1.555	0	0	0	35	0	CFHR3	intronic	NA
RCC_T2--1	chr1:197062423	G	NA	116	0	116	39.233	3.700	0	0	0	113	0	ASPM	intronic	NA
RCC_T2--2	chr1:197062423	G	NA	117	0	117	39.701	2.225	0	0	0	117	0	ASPM	intronic	NA
RCC_T2--3	chr1:197062423	G	A	84	0.190	68	39.485	2.422	16	40.062	1.389	68	16	ASPM	intronic	NA
RCC_T2--4	chr1:197062423	G	NA	96	0	95	39.232	3.243	0	0	0	93	0	ASPM	intronic	NA
RCC_T2--5	chr1:197062423	G	NA	87	0	86	39.279	2.839	0	0	0	85	0	ASPM	intronic	NA
RCC_T2--6	chr1:197062423	G	NA	50	0	50	39.620	2.390	0	0	0	50	0	ASPM	intronic	NA
RCC_T2--GL	chr1:197062423	G	NA	50	0	50	39.160	4.913	0	0	0	49	0	ASPM	intronic	NA
RCC_T2--1	chr1:24668613	C	T	113	0.133	98	37.245	4.754	15	38.067	3.595	92	15	GRHL3	exonic	synonymous_SNV
RCC_T2--2	chr1:24668613	C	NA	89	0	89	36.337	7.506	0	0	0	82	0	GRHL3	exonic	synonymous_SNV
RCC_T2--3	chr1:24668613	C	NA	86	0	86	37.814	3.310	0	0	0	85	0	GRHL3	exonic	synonymous_SNV
RCC_T2--4	chr1:24668613	C	NA	92	0	92	37.424	4.705	0	0	0	85	0	GRHL3	exonic	synonymous_SNV
RCC_T2--5	chr1:24668613	C	NA	98	0	98	37.704	3.468	0	0	0	96	0	GRHL3	exonic	synonymous_SNV
RCC_T2--6	chr1:24668613	C	NA	147	0	145	37.186	5.490	0	0	0	137	0	GRHL3	exonic	synonymous_SNV
RCC_T2--GL	chr1:24668613	C	NA	60	0	59	38.322	4.772	0	0	0	57	0	GRHL3	exonic	synonymous_SNV
RCC_T2--1	chr12:81545719	A	NA	97	0	97	38.474	4.601	0	0	0	93	0	ACSS3	intronic	NA
RCC_T2--2	chr12:81545719	A	T	127	0.268	93	39.247	2.230	34	38.706	3.425	93	33	ACSS3	intronic	NA
RCC_T2--3	chr12:81545719	A	NA	111	0	111	39.045	2.488	0	0	0	110	0	ACSS3	intronic	NA
RCC_T2--4	chr12:81545719	A	T	104	0.125	91	38.780	2.847	13	38.692	2.463	90	13	ACSS3	intronic	NA
RCC_T2--5	chr12:81545719	A	NA	119	0	117	38.103	4.864	0	0	0	112	0	ACSS3	intronic	NA
RCC_T2--6	chr12:81545719	A	NA	61	0	61	39.049	2.673	0	0	0	61	0	ACSS3	intronic	NA
RCC_T2--GL	chr12:81545719	A	NA	94	0	93	38.699	3.172	0	0	0	91	0	ACSS3	intronic	NA
RCC_T2--1	chr1:29070159	C	T	41	0.122	36	38.944	2.693	5	35.200	6.261	36	4	YTHDF2	exonic	synonymous_SNV
RCC_T2--2	chr1:29070159	C	T	45	0.267	33	36.788	6.566	12	37.833	5.114	30	11	YTHDF2	exonic	synonymous_SNV
RCC_T2--3	chr1:29070159	C	T	47	0.298	33	39.091	2.390	14	40.071	1.492	33	14	YTHDF2	exonic	synonymous_SNV
RCC_T2--4	chr1:29070159	C	T	39	0.179	32	39.188	1.975	7	34.000	4.123	32	7	YTHDF2	exonic	synonymous_SNV
RCC_T2--5	chr1:29070159	C	T	46	0.283	33	38.515	2.852	13	39.462	1.984	32	13	YTHDF2	exonic	synonymous_SNV
RCC_T2--6	chr1:29070159	C	T	64	0.125	56	39.000	2.676	8	39.375	1.996	55	8	YTHDF2	exonic	synonymous_SNV
RCC_T2--GL	chr1:29070159	C	NA	48	0	48	38.458	3.031	0	0	0	47	0	YTHDF2	exonic	synonymous_SNV
RCC_T2--1	chr13:111955383	C	NA	72	0	70	37.771	5.716	0	0	0	67	0	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--2	chr13:111955383	C	T	62	0.258	46	39.457	2.198	16	39.938	1.769	46	16	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--3	chr13:111955383	C	NA	66	0	66	39.318	2.993	0	0	0	65	0	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--4	chr13:111955383	C	T	46	0.065	43	39.000	2.828	3	39.333	2.082	43	3	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--5	chr13:111955383	C	NA	66	0	65	38.554	4.031	0	0	0	62	0	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--6	chr13:111955383	C	NA	67	0	66	38.758	4.661	0	0	0	62	0	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--GL	chr13:111955383	C	NA	38	0	38	38.658	3.663	0	0	0	36	0	ARHGEF7	exonic	nonsynonymous_SNV
RCC_T2--1	chr1:32683154	C	T	71	0.113	63	39.063	2.348	8	39.250	1.165	63	8	TMEM234	intronic	NA
RCC_T2--2	chr1:32683154	C	T	57	0.246	43	38.674	6.802	14	39.929	1.141	41	14	TMEM234	intronic	NA
RCC_T2--3	chr1:32683154	C	T	39	0.154	33	39.515	2.852	6	39.833	0.753	32	6	TMEM234	intronic	NA
RCC_T2--4	chr1:32683154	C	T	45	0.022	44	39.159	2.468	1	41.000	0.000	43	1	TMEM234	intronic	NA
RCC_T2--5	chr1:32683154	C	T	32	0.344	21	38.619	3.427	11	39.909	1.375	20	11	TMEM234	intronic	NA
RCC_T2--6	chr1:32683154	C	T	105	0.086	96	39.146	3.931	9	40.556	0.726	94	9	TMEM234	intronic	NA
RCC_T2--GL	chr1:32683154	C	NA	51	0	51	38.706	4.785	0	0	0	50	0	TMEM234	intronic	NA
RCC_T2--1	chr13:52971608	C	T	66	0.136	57	37.579	2.725	9	37.556	2.351	57	9	THSD1	exonic	synonymous_SNV
RCC_T2--2	chr13:52971608	C	T	61	0.197	49	36.367	6.720	12	37.833	2.588	44	12	THSD1	exonic	synonymous_SNV
RCC_T2--3	chr13:52971608	C	T	38	0.289	27	37.370	3.924	11	37.364	3.107	26	11	THSD1	exonic	synonymous_SNV
RCC_T2--4	chr13:52971608	C	T	64	0.203	51	37.804	3.311	13	38.462	2.332	50	13	THSD1	exonic	synonymous_SNV
RCC_T2--5	chr13:52971608	C	T	49	0.245	37	37.892	4.575	12	36.083	3.397	34	12	THSD1	exonic	synonymous_SNV
RCC_T2--6	chr13:52971608	C	T	52	0.058	49	36.980	3.918	3	28.667	17.898	47	2	THSD1	exonic	synonymous_SNV
RCC_T2--GL	chr13:52971608	C	NA	39	0	39	38.436	2.479	0	0	0	38	0	THSD1	exonic	synonymous_SNV
RCC_T2--1	chr14:95058721	T	C	58	0.121	51	38.059	3.484	7	38.143	3.976	50	7	SERPINA5	UTR3	NA
RCC_T2--2	chr14:95058721	T	C	71	0.225	55	38.055	4.288	16	38.812	2.455	53	16	SERPINA5	UTR3	NA
RCC_T2--3	chr14:95058721	T	C	37	0.027	36	38.806	2.796	1	40.000	0.000	35	1	SERPINA5	UTR3	NA
RCC_T2--4	chr14:95058721	T	C	44	0.114	39	37.872	3.722	5	37.600	3.435	38	5	SERPINA5	UTR3	NA
RCC_T2--5	chr14:95058721	T	C	58	0.224	45	37.822	5.029	13	35.692	7.111	43	11	SERPINA5	UTR3	NA
RCC_T2--6	chr14:95058721	T	C	32	0.062	30	38.433	3.059	2	41.000	0.000	29	2	SERPINA5	UTR3	NA
RCC_T2--GL	chr14:95058721	T	NA	43	0	43	37.326	4.824	0	0	0	41	0	SERPINA5	UTR3	NA
RCC_T2--1	chr15:34132910	A	G	60	0.117	53	39.057	2.852	7	37.714	3.498	52	7	RYR3	intronic	NA
RCC_T2--2	chr15:34132910	A	G	69	0.246	52	38.596	5.259	17	39.882	2.027	50	17	RYR3	intronic	NA
RCC_T2--3	chr15:34132910	A	G	55	0.055	52	38.981	2.690	3	38.667	4.041	52	3	RYR3	intronic	NA
RCC_T2--4	chr15:34132910	A	G	41	0.122	36	39.167	3.066	5	37.800	3.493	35	5	RYR3	intronic	NA
RCC_T2--5	chr15:34132910	A	G	47	0.170	39	40.000	1.806	8	38.750	2.659	39	8	RYR3	intronic	NA
RCC_T2--6	chr15:34132910	A	G	18	0.056	16	39.188	2.613	1	41.000	0.000	16	1	RYR3	intronic	NA
RCC_T2--GL	chr15:34132910	A	NA	35	0	35	38.914	2.894	0	0	0	34	0	RYR3	intronic	NA
RCC_T2--1	chr15:75586748	G	A	123	0.138	106	36.981	4.891	17	36.000	4.873	101	15	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--2	chr15:75586748	G	A	134	0.201	106	37.774	3.642	27	35.778	4.822	104	25	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--3	chr15:75586748	G	A	82	0.341	54	37.759	3.453	28	36.429	5.181	53	25	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--4	chr15:75586748	G	A	89	0.090	81	37.630	4.540	8	33.250	4.166	79	7	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--5	chr15:75586748	G	A	122	0.205	97	38.010	3.712	25	37.080	3.883	95	24	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--6	chr15:75586748	G	A	164	0.018	159	38.208	3.379	3	35.667	4.509	156	3	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--GL	chr15:75586748	G	NA	70	0	70	38.371	3.056	0	0	0	69	0	GOLGA6D	exonic	nonsynonymous_SNV
RCC_T2--1	chr15:89861811	C	NA	67	0	66	36.682	4.092	0	0	0	62	0	POLG	exonic	nonsynonymous_SNV
RCC_T2--2	chr15:89861811	C	T	77	0.117	68	35.574	5.804	9	32.889	9.981	61	7	POLG	exonic	nonsynonymous_SNV
RCC_T2--3	chr15:89861811	C	NA	57	0	57	36.947	3.966	0	0	0	55	0	POLG	exonic	nonsynonymous_SNV
RCC_T2--4	chr15:89861811	C	T	56	0.161	47	36.936	5.036	9	36.889	2.369	46	9	POLG	exonic	nonsynonymous_SNV
RCC_T2--5	chr15:89861811	C	NA	47	0	46	36.196	4.726	0	0	0	41	0	POLG	exonic	nonsynonymous_SNV
RCC_T2--6	chr15:89861811	C	NA	84	0	84	37.429	2.864	0	0	0	83	0	POLG	exonic	nonsynonymous_SNV
RCC_T2--GL	chr15:89861811	C	NA	46	0	46	34.783	5.906	0	0	0	40	0	POLG	exonic	nonsynonymous_SNV
RCC_T2--1	chr1:6038367	G	NA	80	0	79	36.380	4.699	0	0	0	77	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--2	chr1:6038367	G	NA	75	0	75	36.587	4.973	0	0	0	72	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--3	chr1:6038367	G	NA	67	0	67	36.627	4.372	0	0	0	63	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--4	chr1:6038367	G	NA	67	0	67	36.836	4.140	0	0	0	63	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--5	chr1:6038367	G	A	60	0.150	50	36.740	5.724	9	37.444	3.575	47	9	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--6	chr1:6038367	G	NA	92	0	92	36.228	6.091	0	0	0	86	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--GL	chr1:6038367	G	NA	51	0	51	37.451	3.956	0	0	0	49	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T2--1	chr16:52480124	C	T	181	0.088	165	39.030	2.872	16	39.750	2.595	162	16	TOX3	exonic	nonsynonymous_SNV
RCC_T2--2	chr16:52480124	C	T	204	0.216	160	38.712	4.222	44	39.227	2.844	157	44	TOX3	exonic	nonsynonymous_SNV
RCC_T2--3	chr16:52480124	C	T	125	0.216	98	39.357	1.912	27	40.111	2.044	98	27	TOX3	exonic	nonsynonymous_SNV
RCC_T2--4	chr16:52480124	C	T	118	0.110	105	38.952	2.740	13	39.231	2.242	104	13	TOX3	exonic	nonsynonymous_SNV
RCC_T2--5	chr16:52480124	C	T	106	0.123	92	39.239	2.491	13	38.769	3.586	91	13	TOX3	exonic	nonsynonymous_SNV
RCC_T2--6	chr16:52480124	C	T	137	0.066	128	39.211	3.837	9	38.222	2.991	125	9	TOX3	exonic	nonsynonymous_SNV
RCC_T2--GL	chr16:52480124	C	NA	90	0	90	39.267	2.307	0	0	0	90	0	TOX3	exonic	nonsynonymous_SNV
RCC_T2--1	chr17:36358087	T	G	45	0.022	44	39.432	4.633	1	40.000	0.000	43	1	LOC440434	ncRNA_intronic	NA
RCC_T2--2	chr17:36358087	T	G	53	0.057	50	39.880	1.848	3	41.000	0.000	50	3	LOC440434	ncRNA_intronic	NA
RCC_T2--3	chr17:36358087	T	G	47	0.106	42	39.119	3.576	5	40.600	0.894	41	5	LOC440434	ncRNA_intronic	NA
RCC_T2--4	chr17:36358087	T	G	53	0.038	51	39.882	2.085	2	39.500	2.121	50	2	LOC440434	ncRNA_intronic	NA
RCC_T2--5	chr17:36358087	T	G	55	0.018	54	38.926	3.191	1	34.000	0.000	52	1	LOC440434	ncRNA_intronic	NA
RCC_T2--6	chr17:36358087	T	G	31	0.161	26	39.577	1.604	5	38.800	3.194	26	5	LOC440434	ncRNA_intronic	NA
RCC_T2--GL	chr17:36358087	T	NA	59	0	59	39.390	2.841	0	0	0	58	0	LOC440434	ncRNA_intronic	NA
RCC_T2--1	chr17:39525884	T	G	84	0.107	75	38.053	3.221	9	38.778	2.539	73	9	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--2	chr17:39525884	T	G	100	0.200	80	37.900	3.055	20	37.600	3.485	80	20	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--3	chr17:39525884	T	G	78	0.077	72	37.694	3.187	6	36.833	3.312	71	6	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--4	chr17:39525884	T	G	68	0.176	56	36.571	5.084	12	38.083	3.118	51	12	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--5	chr17:39525884	T	G	77	0.195	62	38.145	2.648	15	37.867	2.973	62	15	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--6	chr17:39525884	T	G	131	0.076	121	38.289	3.308	10	37.000	2.539	119	10	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--GL	chr17:39525884	T	NA	61	0	61	38.033	3.578	0	0	0	60	0	KRT33B	exonic	nonsynonymous_SNV
RCC_T2--1	chr17:41585088	C	NA	93	0	93	39.656	2.263	0	0	0	93	0	DHX8	intronic	NA
RCC_T2--2	chr17:41585088	C	NA	86	0	86	39.419	2.374	0	0	0	86	0	DHX8	intronic	NA
RCC_T2--3	chr17:41585088	C	G	79	0.228	61	39.607	2.216	18	40.389	1.037	61	18	DHX8	intronic	NA
RCC_T2--4	chr17:41585088	C	NA	72	0	72	38.750	4.869	0	0	0	69	0	DHX8	intronic	NA
RCC_T2--5	chr17:41585088	C	NA	91	0	91	39.538	2.192	0	0	0	91	0	DHX8	intronic	NA
RCC_T2--6	chr17:41585088	C	NA	73	0	73	39.616	2.331	0	0	0	72	0	DHX8	intronic	NA
RCC_T2--GL	chr17:41585088	C	NA	102	0	102	39.598	2.283	0	0	0	101	0	DHX8	intronic	NA
RCC_T2--1	chr17:80545003	G	T	58	0.103	52	35.904	4.737	6	37.500	3.271	48	6	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--2	chr17:80545003	G	T	57	0.123	50	37.240	3.061	7	34.571	7.913	49	6	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--3	chr17:80545003	G	T	61	0.279	44	36.705	5.285	17	35.765	4.816	43	15	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--4	chr17:80545003	G	T	55	0.109	49	37.286	5.119	6	36.500	1.378	48	6	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--5	chr17:80545003	G	T	63	0.159	53	36.094	5.443	10	37.300	2.830	51	10	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--6	chr17:80545003	G	T	117	0.051	109	36.486	5.014	6	34.333	5.820	103	5	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--GL	chr17:80545003	G	NA	46	0	45	35.844	4.237	0	0	0	42	0	FOXK2	exonic	nonsynonymous_SNV
RCC_T2--1	chr1:82409438	C	NA	149	0	149	38.530	4.497	0	0	0	144	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--2	chr1:82409438	C	NA	192	0	192	39.500	2.422	0	0	0	190	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--3	chr1:82409438	C	G	148	0.142	127	39.370	3.055	21	38.048	4.129	126	20	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--4	chr1:82409438	C	NA	118	0	116	38.853	4.101	0	0	0	113	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--5	chr1:82409438	C	NA	144	0	144	39.229	3.516	0	0	0	142	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--6	chr1:82409438	C	NA	55	0	55	39.218	3.594	0	0	0	54	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--GL	chr1:82409438	C	NA	100	0	99	39.455	2.392	0	0	0	98	0	LPHN2	exonic	nonsynonymous_SNV
RCC_T2--1	chr19:50412772	T	C	79	0.101	71	35.873	4.808	8	36.750	3.012	65	8	NUP62	exonic	nonsynonymous_SNV
RCC_T2--2	chr19:50412772	T	C	77	0.195	62	35.839	4.506	15	36.733	2.404	56	15	NUP62	exonic	nonsynonymous_SNV
RCC_T2--3	chr19:50412772	T	NA	63	0	62	35.306	5.756	0	0	0	55	0	NUP62	exonic	nonsynonymous_SNV
RCC_T2--4	chr19:50412772	T	C	68	0.103	60	34.500	6.190	7	34.714	12.459	52	6	NUP62	exonic	nonsynonymous_SNV
RCC_T2--5	chr19:50412772	T	C	72	0.139	62	35.677	6.650	10	35.700	6.717	57	9	NUP62	exonic	nonsynonymous_SNV
RCC_T2--6	chr19:50412772	T	C	123	0.057	116	35.526	5.286	7	36.000	2.449	106	7	NUP62	exonic	nonsynonymous_SNV
RCC_T2--GL	chr19:50412772	T	NA	62	0	62	35.242	5.216	0	0	0	58	0	NUP62	exonic	nonsynonymous_SNV
RCC_T2--1	chr19:54209390	C	T	31	0.290	22	39.500	1.896	9	37.778	3.962	22	9	MIR526A1	upstream	NA
RCC_T2--2	chr19:54209390	C	T	28	0.429	16	39.750	1.528	12	39.667	2.902	16	12	MIR526A1	upstream	NA
RCC_T2--3	chr19:54209390	C	T	19	0.316	13	38.308	5.056	6	38.333	2.658	12	6	MIR526A1	upstream	NA
RCC_T2--4	chr19:54209390	C	T	32	0.219	25	36.760	7.672	7	40.429	1.512	22	7	MIR526A1	upstream	NA
RCC_T2--5	chr19:54209390	C	T	32	0.094	29	38.103	7.168	3	38.667	3.215	27	3	MIR526A1	upstream	NA
RCC_T2--6	chr19:54209390	C	T	33	0.061	31	39.613	1.564	2	36.500	3.536	31	2	MIR526A1	upstream	NA
RCC_T2--GL	chr19:54209390	C	NA	33	0	33	38.909	2.898	0	0	0	33	0	MIR526A1	upstream	NA
RCC_T2--1	chr21:22200769	G	T	136	0.162	114	38.193	6.419	22	39.273	1.279	107	22	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--2	chr21:22200769	G	T	114	0.246	86	38.837	3.286	28	37.000	6.864	85	25	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--3	chr21:22200769	G	T	117	0.291	83	39.952	1.681	34	38.618	3.104	83	33	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--4	chr21:22200769	G	T	89	0.135	77	38.481	5.433	12	39.250	1.422	73	12	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--5	chr21:22200769	G	T	112	0.089	102	39.304	2.680	10	38.400	3.062	101	10	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--6	chr21:22200769	G	T	101	0.099	91	39.077	2.975	10	39.800	0.919	90	10	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--GL	chr21:22200769	G	NA	75	0	75	39.040	3.314	0	0	0	73	0	LINC00320(dist=25343),NCAM2(dist=169864)	intergenic	NA
RCC_T2--1	chr21:46703346	G	A	213	0.094	193	36.891	5.617	20	35.150	10.215	179	18	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--2	chr21:46703346	G	A	219	0.228	168	37.589	3.545	50	37.440	4.691	164	47	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--3	chr21:46703346	G	A	161	0.255	120	36.875	4.690	41	38.268	3.264	111	41	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--4	chr21:46703346	G	A	170	0.106	152	38.046	4.052	18	37.500	3.899	149	17	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--5	chr21:46703346	G	A	151	0.093	135	37.844	3.453	14	37.571	3.322	132	14	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--6	chr21:46703346	G	A	238	0.059	223	37.498	3.705	14	38.071	3.452	217	14	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--GL	chr21:46703346	G	NA	147	0	147	37.415	5.012	0	0	0	142	0	POFUT2	exonic	nonsynonymous_SNV
RCC_T2--1	chr2:155252548	T	NA	69	0	69	39.478	2.465	0	0	0	68	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--2	chr2:155252548	T	NA	88	0	88	39.466	2.704	0	0	0	86	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--3	chr2:155252548	T	NA	58	0	58	39.224	3.061	0	0	0	57	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--4	chr2:155252548	T	NA	45	0	45	39.444	2.221	0	0	0	45	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--5	chr2:155252548	T	NA	67	0	67	39.597	2.140	0	0	0	66	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--6	chr2:155252548	T	A	16	0.250	12	40.500	0.674	4	38.500	1.915	12	4	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--GL	chr2:155252548	T	NA	47	0	47	38.979	3.359	0	0	0	46	0	GALNT13	exonic	nonsynonymous_SNV
RCC_T2--1	chr2:179596625	C	T	323	0.139	276	38.163	4.184	45	38.400	5.374	265	43	TTN	exonic	synonymous_SNV
RCC_T2--2	chr2:179596625	C	T	362	0.202	289	38.983	3.376	73	38.411	4.588	283	71	TTN	exonic	synonymous_SNV
RCC_T2--3	chr2:179596625	C	T	271	0.214	213	38.977	2.821	58	38.897	4.833	210	56	TTN	exonic	synonymous_SNV
RCC_T2--4	chr2:179596625	C	T	250	0.140	215	38.874	3.161	35	39.171	3.417	211	34	TTN	exonic	synonymous_SNV
RCC_T2--5	chr2:179596625	C	T	221	0.172	182	39.126	2.418	38	39.000	2.578	182	37	TTN	exonic	synonymous_SNV
RCC_T2--6	chr2:179596625	C	T	203	0.113	179	39.095	2.596	23	38.478	3.740	177	22	TTN	exonic	synonymous_SNV
RCC_T2--GL	chr2:179596625	C	NA	134	0	134	39.127	2.553	0	0	0	133	0	TTN	exonic	synonymous_SNV
RCC_T2--1	chr2:32466208	A	NA	53	0	53	40.151	1.420	0	0	0	53	0	NLRC4	intronic	NA
RCC_T2--2	chr2:32466208	A	NA	64	0	64	39.734	2.102	0	0	0	64	0	NLRC4	intronic	NA
RCC_T2--3	chr2:32466208	A	C	48	0.292	34	39.471	3.221	14	40.286	1.490	33	14	NLRC4	intronic	NA
RCC_T2--4	chr2:32466208	A	NA	54	0	54	39.352	4.024	0	0	0	53	0	NLRC4	intronic	NA
RCC_T2--5	chr2:32466208	A	NA	45	0	45	38.867	5.194	0	0	0	44	0	NLRC4	intronic	NA
RCC_T2--6	chr2:32466208	A	NA	51	0	51	39.902	2.419	0	0	0	51	0	NLRC4	intronic	NA
RCC_T2--GL	chr2:32466208	A	NA	52	0	52	38.519	5.315	0	0	0	50	0	NLRC4	intronic	NA
RCC_T2--1	chr2:79254935	C	A	184	0.174	152	39.211	3.421	32	39.125	3.119	150	31	REG3G	exonic	synonymous_SNV
RCC_T2--2	chr2:79254935	C	A	187	0.225	144	39.285	2.951	42	39.000	2.604	142	41	REG3G	exonic	synonymous_SNV
RCC_T2--3	chr2:79254935	C	A	154	0.286	110	39.164	3.123	44	37.636	7.674	108	41	REG3G	exonic	synonymous_SNV
RCC_T2--4	chr2:79254935	C	A	138	0.138	119	38.866	4.407	19	39.737	1.996	115	19	REG3G	exonic	synonymous_SNV
RCC_T2--5	chr2:79254935	C	A	140	0.143	119	38.311	6.246	20	39.050	2.038	113	20	REG3G	exonic	synonymous_SNV
RCC_T2--6	chr2:79254935	C	A	153	0.046	145	38.510	4.889	7	40.571	0.535	138	7	REG3G	exonic	synonymous_SNV
RCC_T2--GL	chr2:79254935	C	NA	76	0	76	39.066	4.250	0	0	0	74	0	REG3G	exonic	synonymous_SNV
RCC_T2--1	chr3:169557957	C	NA	92	0	92	37.728	4.606	0	0	0	88	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--2	chr3:169557957	C	NA	84	0	83	39.157	2.969	0	0	0	81	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--3	chr3:169557957	C	T	79	0.177	65	38.738	2.514	14	38.786	3.662	65	13	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--4	chr3:169557957	C	NA	75	0	74	38.554	4.207	0	0	0	72	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--5	chr3:169557957	C	NA	74	0	74	38.257	4.227	0	0	0	73	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--6	chr3:169557957	C	NA	72	0	71	38.606	3.327	0	0	0	69	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--GL	chr3:169557957	C	NA	52	0	52	38.538	4.282	0	0	0	51	0	LRRC31	exonic	nonsynonymous_SNV
RCC_T2--1	chr3:183520299	A	G	40	0.050	38	39.263	2.250	2	37.000	0.000	38	2	YEATS2	intronic	NA
RCC_T2--2	chr3:183520299	A	NA	42	0	42	39.214	2.374	0	0	0	42	0	YEATS2	intronic	NA
RCC_T2--3	chr3:183520299	A	G	37	0.081	34	38.971	2.564	3	32.333	4.509	34	2	YEATS2	intronic	NA
RCC_T2--4	chr3:183520299	A	G	42	0.167	35	38.800	3.123	7	34.857	1.464	35	7	YEATS2	intronic	NA
RCC_T2--5	chr3:183520299	A	G	37	0.027	36	38.056	3.107	1	34.000	0.000	35	1	YEATS2	intronic	NA
RCC_T2--6	chr3:183520299	A	NA	26	0	26	38.538	3.203	0	0	0	25	0	YEATS2	intronic	NA
RCC_T2--GL	chr3:183520299	A	NA	33	0	33	40.091	0.980	0	0	0	33	0	YEATS2	intronic	NA
RCC_T2--1	chr4:187118788	T	A	70	0.129	61	39.213	2.517	9	39.556	2.698	61	9	CYP4V2	intronic	NA
RCC_T2--2	chr4:187118788	T	A	68	0.147	58	38.862	4.673	10	40.400	1.265	57	10	CYP4V2	intronic	NA
RCC_T2--3	chr4:187118788	T	A	68	0.015	67	39.537	2.676	1	39.000	0.000	67	1	CYP4V2	intronic	NA
RCC_T2--4	chr4:187118788	T	A	58	0.052	55	39.564	2.201	3	41.000	0.000	55	3	CYP4V2	intronic	NA
RCC_T2--5	chr4:187118788	T	A	76	0.158	63	39.857	2.348	12	37.750	3.934	62	12	CYP4V2	intronic	NA
RCC_T2--6	chr4:187118788	T	A	34	0.118	29	39.931	1.999	4	38.250	5.500	29	4	CYP4V2	intronic	NA
RCC_T2--GL	chr4:187118788	T	NA	37	0	37	39.919	1.754	0	0	0	37	0	CYP4V2	intronic	NA
RCC_T2--1	chr5:132272818	G	T	44	0.205	35	37.171	4.091	9	33.778	4.055	34	7	AFF4	exonic	nonsynonymous_SNV
RCC_T2--2	chr5:132272818	G	NA	40	0	39	37.744	3.346	0	0	0	38	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--3	chr5:132272818	G	NA	45	0	45	36.222	5.648	0	0	0	42	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--4	chr5:132272818	G	NA	54	0	54	36.907	6.283	0	0	0	51	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--5	chr5:132272818	G	NA	48	0	48	36.562	6.713	0	0	0	45	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--6	chr5:132272818	G	NA	95	0	95	37.463	3.482	0	0	0	92	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--GL	chr5:132272818	G	NA	43	0	43	37.000	4.209	0	0	0	41	0	AFF4	exonic	nonsynonymous_SNV
RCC_T2--1	chr5:140502541	A	G	345	0.099	309	37.990	4.231	34	38.353	5.008	299	33	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--2	chr5:140502541	A	G	375	0.253	279	37.774	4.299	95	38.495	3.268	268	92	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--3	chr5:140502541	A	G	317	0.196	255	38.094	3.863	62	38.435	2.918	247	61	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--4	chr5:140502541	A	G	279	0.122	244	38.016	3.712	34	38.941	2.411	241	34	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--5	chr5:140502541	A	G	287	0.094	259	37.691	4.085	27	38.704	3.821	250	26	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--6	chr5:140502541	A	G	237	0.118	208	37.962	3.536	28	38.536	3.294	204	27	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--GL	chr5:140502541	A	NA	227	0	226	38.283	3.964	0	0	0	219	0	PCDHB4	exonic	nonsynonymous_SNV
RCC_T2--1	chr5:14359589	C	G	69	0.159	58	37.793	3.432	11	38.818	2.523	56	11	TRIO	exonic	nonsynonymous_SNV
RCC_T2--2	chr5:14359589	C	NA	49	0	49	37.510	2.987	0	0	0	49	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--3	chr5:14359589	C	NA	44	0	44	37.523	2.865	0	0	0	43	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--4	chr5:14359589	C	NA	48	0	48	37.333	4.324	0	0	0	45	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--5	chr5:14359589	C	NA	50	0	50	38.480	2.787	0	0	0	50	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--6	chr5:14359589	C	NA	68	0	68	37.868	3.046	0	0	0	68	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--GL	chr5:14359589	C	NA	35	0	35	36.886	4.807	0	0	0	34	0	TRIO	exonic	nonsynonymous_SNV
RCC_T2--1	chr5:167988433	T	A	46	0.022	45	39.289	2.332	1	40.000	0.000	45	1	PANK3	exonic	nonsynonymous_SNV
RCC_T2--2	chr5:167988433	T	A	61	0.049	58	38.914	3.130	3	37.000	2.646	58	3	PANK3	exonic	nonsynonymous_SNV
RCC_T2--3	chr5:167988433	T	NA	37	0	37	38.892	4.122	0	0	0	36	0	PANK3	exonic	nonsynonymous_SNV
RCC_T2--4	chr5:167988433	T	A	46	0.022	45	38.711	3.952	1	34.000	0.000	44	1	PANK3	exonic	nonsynonymous_SNV
RCC_T2--5	chr5:167988433	T	NA	62	0	62	38.371	4.509	0	0	0	60	0	PANK3	exonic	nonsynonymous_SNV
RCC_T2--6	chr5:167988433	T	A	17	0.235	13	39.385	2.501	4	41.000	0.000	13	4	PANK3	exonic	nonsynonymous_SNV
RCC_T2--GL	chr5:167988433	T	NA	48	0	48	38.604	2.632	0	0	0	48	0	PANK3	exonic	nonsynonymous_SNV
RCC_T2--1	chr6:117113714	T	C	88	0.091	80	38.650	3.562	8	40.000	1.604	79	8	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--2	chr6:117113714	T	C	100	0.200	80	38.337	2.828	20	39.250	3.998	80	19	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--3	chr6:117113714	T	C	78	0.295	55	37.527	6.131	23	39.087	3.837	52	22	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--4	chr6:117113714	T	C	64	0.109	57	38.632	4.300	7	39.143	2.545	56	7	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--5	chr6:117113714	T	C	55	0.109	49	38.306	4.588	6	40.000	1.673	47	6	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--6	chr6:117113714	T	C	40	0.025	39	38.462	4.064	1	40.000	0.000	38	1	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--GL	chr6:117113714	T	NA	67	0	67	38.836	2.978	0	0	0	66	0	GPRC6A	exonic	nonsynonymous_SNV
RCC_T2--1	chr6:152671992	A	G	65	0.092	59	39.271	2.250	6	39.500	1.378	59	6	SYNE1	intronic	NA
RCC_T2--2	chr6:152671992	A	G	66	0.212	52	39.154	2.600	14	39.214	4.191	51	13	SYNE1	intronic	NA
RCC_T2--3	chr6:152671992	A	G	63	0.270	46	39.370	2.370	17	37.118	4.794	46	16	SYNE1	intronic	NA
RCC_T2--4	chr6:152671992	A	G	53	0.189	43	39.070	2.303	10	37.400	4.195	43	10	SYNE1	intronic	NA
RCC_T2--5	chr6:152671992	A	G	63	0.048	60	38.867	3.735	3	38.333	1.155	59	3	SYNE1	intronic	NA
RCC_T2--6	chr6:152671992	A	NA	24	0	24	37.667	6.084	0	0	0	22	0	SYNE1	intronic	NA
RCC_T2--GL	chr6:152671992	A	NA	50	0	50	39.440	2.062	0	0	0	50	0	SYNE1	intronic	NA
RCC_T2--1	chr6:46135891	C	T	112	0.116	98	38.163	4.109	13	39.385	2.063	96	13	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--2	chr6:46135891	C	T	80	0.263	59	38.034	3.886	21	37.714	6.141	56	20	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--3	chr6:46135891	C	T	84	0.202	67	38.045	3.126	17	38.471	2.183	66	17	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--4	chr6:46135891	C	T	67	0.119	59	37.932	4.102	8	39.250	1.669	58	8	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--5	chr6:46135891	C	T	72	0.083	66	37.970	4.788	6	40.000	2.000	63	6	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--6	chr6:46135891	C	NA	37	0	37	38.676	2.561	0	0	0	37	0	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--GL	chr6:46135891	C	NA	50	0	50	39.140	2.157	0	0	0	50	0	ENPP5	exonic	nonsynonymous_SNV
RCC_T2--1	chr7:138593868	C	NA	70	0	70	38.643	3.221	0	0	0	68	0	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--2	chr7:138593868	C	T	54	0.130	47	39.681	1.990	7	39.143	2.035	47	7	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--3	chr7:138593868	C	NA	66	0	66	37.485	4.668	0	0	0	61	0	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--4	chr7:138593868	C	T	44	0.295	31	38.484	2.850	13	37.615	4.426	31	12	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--5	chr7:138593868	C	NA	67	0	66	39.152	2.432	0	0	0	65	0	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--6	chr7:138593868	C	NA	45	0	45	37.733	5.374	0	0	0	43	0	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--GL	chr7:138593868	C	NA	35	0	35	39.429	2.279	0	0	0	35	0	KIAA1549(NM_001164665:exon6:c.3146-1G>A,NM_020910:exon6:c.3146-1G>A)	splicing	NA
RCC_T2--1	chr7:29103731	T	NA	77	0	77	39.065	4.063	0	0	0	76	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--2	chr7:29103731	T	NA	100	0	99	39.596	2.567	0	0	0	98	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--3	chr7:29103731	T	G	71	0.183	57	39.965	1.955	13	39.308	2.287	57	13	CPVL	exonic	nonsynonymous_SNV
RCC_T2--4	chr7:29103731	T	NA	58	0	58	39.310	2.664	0	0	0	57	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--5	chr7:29103731	T	NA	83	0	83	38.470	5.081	0	0	0	77	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--6	chr7:29103731	T	NA	43	0	43	38.977	4.459	0	0	0	42	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--GL	chr7:29103731	T	NA	52	0	51	38.922	4.078	0	0	0	49	0	CPVL	exonic	nonsynonymous_SNV
RCC_T2--1	chr7:6760395	A	G	49	0.041	24	37.375	2.886	2	37.000	0.000	24	2	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--2	chr7:6760395	A	NA	64	0	43	37.535	5.658	0	0	0	41	0	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--3	chr7:6760395	A	G	50	0.140	19	39.263	2.077	7	33.714	1.976	19	7	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--4	chr7:6760395	A	G	48	0.042	17	37.941	4.437	2	33.000	5.657	16	1	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--5	chr7:6760395	A	G	74	0.041	42	38.762	2.739	3	35.000	1.732	42	3	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--6	chr7:6760395	A	G	107	0.056	49	37.347	4.986	6	35.667	1.211	48	6	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--GL	chr7:6760395	A	NA	61	0	37	38.351	3.259	0	0	0	36	0	ZNF12(dist=13829),PMS2CL(dist=14541)	intergenic	NA
RCC_T2--1	chr7:98581774	G	NA	134	0	134	38.037	4.355	0	0	0	130	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--2	chr7:98581774	G	NA	139	0	138	38.696	3.257	0	0	0	136	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--3	chr7:98581774	G	NA	124	0	123	38.732	3.054	0	0	0	121	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--4	chr7:98581774	G	NA	108	0	107	38.570	3.222	0	0	0	105	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--5	chr7:98581774	G	A	135	0.170	111	38.171	4.245	23	38.565	2.921	105	23	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--6	chr7:98581774	G	NA	101	0	101	38.248	3.780	0	0	0	99	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--GL	chr7:98581774	G	NA	75	0	75	38.760	3.132	0	0	0	74	0	TRRAP	exonic	nonsynonymous_SNV
RCC_T2--1	chr8:128752925	C	T	118	0.153	100	37.990	3.401	18	37.722	2.986	97	18	MYC	exonic	synonymous_SNV
RCC_T2--2	chr8:128752925	C	T	119	0.151	99	37.495	3.660	18	37.778	3.209	96	18	MYC	exonic	synonymous_SNV
RCC_T2--3	chr8:128752925	C	T	75	0.227	58	37.741	3.649	17	37.941	3.071	56	17	MYC	exonic	synonymous_SNV
RCC_T2--4	chr8:128752925	C	T	74	0.027	72	37.986	3.450	2	37.000	0.000	69	2	MYC	exonic	synonymous_SNV
RCC_T2--5	chr8:128752925	C	T	87	0.115	76	38.316	2.949	10	38.800	2.658	75	10	MYC	exonic	synonymous_SNV
RCC_T2--6	chr8:128752925	C	T	183	0.044	175	37.674	4.475	8	39.000	2.976	169	8	MYC	exonic	synonymous_SNV
RCC_T2--GL	chr8:128752925	C	NA	83	0	82	38.488	3.454	0	0	0	80	0	MYC	exonic	synonymous_SNV
RCC_T2--1	chr8:131172262	C	A	57	0.158	48	39.104	2.731	9	38.556	4.065	48	8	ASAP1	intronic	NA
RCC_T2--2	chr8:131172262	C	A	39	0.154	33	38.909	2.919	6	40.667	0.516	33	6	ASAP1	intronic	NA
RCC_T2--3	chr8:131172262	C	A	36	0.361	23	38.783	2.610	13	39.923	1.256	23	13	ASAP1	intronic	NA
RCC_T2--4	chr8:131172262	C	A	45	0.067	42	39.310	1.957	3	39.000	2.000	42	3	ASAP1	intronic	NA
RCC_T2--5	chr8:131172262	C	A	49	0.245	37	38.676	3.735	12	38.500	2.431	36	12	ASAP1	intronic	NA
RCC_T2--6	chr8:131172262	C	A	35	0.057	33	39.121	2.329	2	41.000	0.000	33	2	ASAP1	intronic	NA
RCC_T2--GL	chr8:131172262	C	NA	38	0	38	39.000	3.154	0	0	0	37	0	ASAP1	intronic	NA
RCC_T2--1	chr8:62465767	G	T	81	0.222	63	38.333	4.690	18	39.556	1.917	62	18	ASPH	intronic	NA
RCC_T2--2	chr8:62465767	G	T	75	0.267	55	38.000	4.842	20	39.600	2.817	52	20	ASPH	intronic	NA
RCC_T2--3	chr8:62465767	G	NA	57	0	57	39.053	4.756	0	0	0	56	0	ASPH	intronic	NA
RCC_T2--4	chr8:62465767	G	T	58	0.155	49	39.633	2.018	9	40.333	1.118	49	9	ASPH	intronic	NA
RCC_T2--5	chr8:62465767	G	T	51	0.039	49	37.918	4.339	2	31.500	9.192	47	1	ASPH	intronic	NA
RCC_T2--6	chr8:62465767	G	T	32	0.125	28	39.714	1.960	4	37.500	4.726	28	4	ASPH	intronic	NA
RCC_T2--GL	chr8:62465767	G	NA	55	0	54	39.519	2.255	0	0	0	54	0	ASPH	intronic	NA
RCC_T2--1	chr8:71071955	C	G	60	0.217	47	38.447	4.085	13	35.692	3.545	45	12	NCOA2	intronic	NA
RCC_T2--2	chr8:71071955	C	NA	61	0	61	39.328	2.364	0	0	0	61	0	NCOA2	intronic	NA
RCC_T2--3	chr8:71071955	C	NA	46	0	46	39.174	2.870	0	0	0	45	0	NCOA2	intronic	NA
RCC_T2--4	chr8:71071955	C	NA	42	0	42	38.571	5.204	0	0	0	41	0	NCOA2	intronic	NA
RCC_T2--5	chr8:71071955	C	NA	54	0	54	39.593	2.211	0	0	0	54	0	NCOA2	intronic	NA
RCC_T2--6	chr8:71071955	C	NA	48	0	48	39.229	2.537	0	0	0	48	0	NCOA2	intronic	NA
RCC_T2--GL	chr8:71071955	C	NA	35	0	35	38.543	3.100	0	0	0	34	0	NCOA2	intronic	NA
RCC_T2--1	chr8:77765426	C	NA	105	0	105	36.314	5.075	0	0	0	96	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--2	chr8:77765426	C	NA	132	0	132	37.636	4.689	0	0	0	122	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--3	chr8:77765426	C	T	87	0.138	75	36.587	5.289	12	37.500	3.729	67	11	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--4	chr8:77765426	C	NA	71	0	71	37.338	5.555	0	0	0	65	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--5	chr8:77765426	C	NA	80	0	80	37.763	5.387	0	0	0	76	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--6	chr8:77765426	C	NA	94	0	94	36.691	4.997	0	0	0	86	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--GL	chr8:77765426	C	NA	46	0	45	39.022	2.684	0	0	0	45	0	ZFHX4	exonic	nonsynonymous_SNV
RCC_T2--1	chr8:95658562	A	T	65	0.046	62	39.194	3.218	3	39.000	1.732	61	3	ESRP1	intronic	NA
RCC_T2--2	chr8:95658562	A	T	55	0.200	44	39.750	2.304	11	40.636	0.505	44	11	ESRP1	intronic	NA
RCC_T2--3	chr8:95658562	A	T	61	0.082	56	39.411	2.507	5	36.200	3.701	56	5	ESRP1	intronic	NA
RCC_T2--4	chr8:95658562	A	T	52	0.058	49	39.633	3.127	3	40.333	0.577	48	3	ESRP1	intronic	NA
RCC_T2--5	chr8:95658562	A	T	64	0.078	59	40.034	2.173	5	37.000	5.196	59	4	ESRP1	intronic	NA
RCC_T2--6	chr8:95658562	A	NA	25	0	25	39.680	4.543	0	0	0	24	0	ESRP1	intronic	NA
RCC_T2--GL	chr8:95658562	A	NA	54	0	54	40.167	1.871	0	0	0	54	0	ESRP1	intronic	NA
RCC_T2--1	chr9:133488388	C	A	81	0.123	71	36.789	5.256	10	35.500	5.191	63	8	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--2	chr9:133488388	C	A	76	0.158	64	38.281	4.184	12	39.250	2.989	61	12	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--3	chr9:133488388	C	A	78	0.231	60	36.650	6.630	18	37.778	5.309	52	16	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--4	chr9:133488388	C	A	54	0.056	51	37.608	7.354	3	38.667	4.041	46	3	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--5	chr9:133488388	C	A	64	0.203	51	37.078	7.068	13	31.923	8.930	45	9	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--6	chr9:133488388	C	A	89	0.124	78	36.859	6.414	11	37.545	5.126	67	10	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--GL	chr9:133488388	C	NA	59	0	58	37.483	5.868	0	0	0	54	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T2--1	chr9:135562526	G	A	48	0.104	43	38.651	3.265	5	38.000	1.581	42	5	GTF3C4	intronic	NA
RCC_T2--2	chr9:135562526	G	A	54	0.241	41	39.171	2.616	13	38.385	2.785	41	13	GTF3C4	intronic	NA
RCC_T2--3	chr9:135562526	G	A	39	0.282	28	39.000	3.055	11	37.364	3.749	28	11	GTF3C4	intronic	NA
RCC_T2--4	chr9:135562526	G	A	35	0.171	29	39.552	1.703	6	37.833	3.601	29	6	GTF3C4	intronic	NA
RCC_T2--5	chr9:135562526	G	A	66	0.106	58	38.810	2.659	7	36.571	10.422	58	6	GTF3C4	intronic	NA
RCC_T2--6	chr9:135562526	G	A	25	0.120	22	38.773	3.531	3	31.667	1.155	21	3	GTF3C4	intronic	NA
RCC_T2--GL	chr9:135562526	G	NA	44	0	43	39.000	3.723	0	0	0	42	0	GTF3C4	intronic	NA
RCC_T2--1	chr9:19357283	C	T	42	0.024	41	38.829	2.729	1	31.000	0.000	40	1	DENND4C	intronic	NA
RCC_T2--2	chr9:19357283	C	T	30	0.100	27	38.370	4.797	3	36.000	1.732	26	3	DENND4C	intronic	NA
RCC_T2--3	chr9:19357283	C	T	37	0.162	31	39.484	1.262	6	35.667	3.445	31	6	DENND4C	intronic	NA
RCC_T2--4	chr9:19357283	C	T	28	0.036	26	38.192	5.790	1	34.000	0.000	24	1	DENND4C	intronic	NA
RCC_T2--5	chr9:19357283	C	T	37	0.135	32	38.906	2.069	5	36.600	2.881	32	5	DENND4C	intronic	NA
RCC_T2--6	chr9:19357283	C	T	11	0.091	10	39.200	1.619	1	41.000	0.000	10	1	DENND4C	intronic	NA
RCC_T2--GL	chr9:19357283	C	NA	41	0	41	38.341	5.199	0	0	0	40	0	DENND4C	intronic	NA
RCC_T2--1	chr9:78808337	C	A	81	0.037	58	28.293	10.207	3	33.667	2.517	32	3	PCSK5	UTR3	NA
RCC_T2--2	chr9:78808337	C	A	86	0.023	66	28.621	8.078	2	35.500	2.121	29	2	PCSK5	UTR3	NA
RCC_T2--3	chr9:78808337	C	A	65	0.092	42	28.381	7.496	6	30.667	12.660	21	5	PCSK5	UTR3	NA
RCC_T2--4	chr9:78808337	C	A	51	0.059	34	24.324	8.104	3	36.000	1.732	13	3	PCSK5	UTR3	NA
RCC_T2--5	chr9:78808337	C	A	52	0.038	35	27.200	10.440	2	35.500	2.121	16	2	PCSK5	UTR3	NA
RCC_T2--6	chr9:78808337	C	A	44	0.159	28	28.107	8.975	7	29.857	11.157	16	6	PCSK5	UTR3	NA
RCC_T2--GL	chr9:78808337	C	NA	47	0	36	28.167	9.826	0	0	0	19	0	PCSK5	UTR3	NA
RCC_T3--1	chr10:102048789	G	NA	38	0	38	65.921	8.818	0	0	0	38	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:102048789	G	NA	35	0	35	67.857	3.986	0	0	0	35	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:102048789	G	NA	49	0	49	65.082	8.441	0	0	0	49	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:102048789	G	NA	34	0	34	65.353	10.183	0	0	0	34	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:102048789	G	NA	21	0	21	65.952	8.553	0	0	0	21	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:102048789	G	NA	36	0	36	65.111	9.192	0	0	0	36	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:102048789	G	NA	59	0	59	67.034	6.903	0	0	0	59	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:102048789	G	T	56	0.107	50	65.280	7.762	6	65.667	5.645	50	6	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:102048789	G	NA	43	0	43	65.186	8.987	0	0	0	43	0	PKD2L1	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:104175037	T	NA	27	0	27	67.333	4.323	0	0	0	27	0	PSD	intronic	NA
RCC_T3--2	chr10:104175037	T	NA	42	0	42	66.667	7.867	0	0	0	42	0	PSD	intronic	NA
RCC_T3--3	chr10:104175037	T	NA	47	0	47	66.021	6.800	0	0	0	47	0	PSD	intronic	NA
RCC_T3--4	chr10:104175037	T	NA	20	0	20	68.250	5.270	0	0	0	20	0	PSD	intronic	NA
RCC_T3--5	chr10:104175037	T	NA	21	0	21	66.857	7.780	0	0	0	21	0	PSD	intronic	NA
RCC_T3--6	chr10:104175037	T	C	33	0.121	29	67.138	5.514	4	65.750	4.924	29	4	PSD	intronic	NA
RCC_T3--7	chr10:104175037	T	NA	45	0	45	67.889	4.308	0	0	0	45	0	PSD	intronic	NA
RCC_T3--8	chr10:104175037	T	NA	49	0	49	67.163	4.460	0	0	0	49	0	PSD	intronic	NA
RCC_T3--GL	chr10:104175037	T	NA	39	0	39	67.513	4.946	0	0	0	39	0	PSD	intronic	NA
RCC_T3--1	chr10:104934493	C	T	21	0.143	18	69.667	2.870	3	67.000	5.568	18	3	NT5C2	intronic	NA
RCC_T3--2	chr10:104934493	C	T	29	0.207	23	68.565	4.897	6	71.667	0.516	23	6	NT5C2	intronic	NA
RCC_T3--3	chr10:104934493	C	T	40	0.425	23	69.478	3.964	17	68.882	2.027	23	17	NT5C2	intronic	NA
RCC_T3--4	chr10:104934493	C	T	43	0.326	29	67.724	6.681	14	69.000	3.679	29	14	NT5C2	intronic	NA
RCC_T3--5	chr10:104934493	C	T	25	0.040	24	67.375	5.709	1	62.000	0.000	24	1	NT5C2	intronic	NA
RCC_T3--6	chr10:104934493	C	T	32	0.094	29	64.724	7.111	3	71.333	0.577	29	3	NT5C2	intronic	NA
RCC_T3--7	chr10:104934493	C	T	33	0.182	27	67.333	6.725	6	69.500	3.082	27	6	NT5C2	intronic	NA
RCC_T3--8	chr10:104934493	C	T	41	0.195	33	67.758	5.178	8	68.875	1.959	33	8	NT5C2	intronic	NA
RCC_T3--GL	chr10:104934493	C	NA	48	0	48	68.354	4.061	0	0	0	48	0	NT5C2	intronic	NA
RCC_T3--1	chr10:105795144	G	NA	21	0	21	66.048	6.095	0	0	0	21	0	COL17A1	intronic	NA
RCC_T3--2	chr10:105795144	G	NA	33	0	33	67.030	4.341	0	0	0	33	0	COL17A1	intronic	NA
RCC_T3--3	chr10:105795144	G	NA	39	0	39	67.872	3.672	0	0	0	39	0	COL17A1	intronic	NA
RCC_T3--4	chr10:105795144	G	NA	22	0	22	68.000	3.324	0	0	0	22	0	COL17A1	intronic	NA
RCC_T3--5	chr10:105795144	G	NA	23	0	23	67.217	4.492	0	0	0	23	0	COL17A1	intronic	NA
RCC_T3--6	chr10:105795144	G	NA	16	0	16	67.250	3.786	0	0	0	16	0	COL17A1	intronic	NA
RCC_T3--7	chr10:105795144	G	NA	41	0	41	65.439	6.446	0	0	0	41	0	COL17A1	intronic	NA
RCC_T3--8	chr10:105795144	G	A	34	0.118	30	66.967	6.677	4	64.250	2.217	30	4	COL17A1	intronic	NA
RCC_T3--GL	chr10:105795144	G	NA	34	0	34	65.265	4.876	0	0	0	34	0	COL17A1	intronic	NA
RCC_T3--1	chr10:111628167	T	NA	20	0	20	66.200	4.927	0	0	0	20	0	XPNPEP1	intronic	NA
RCC_T3--2	chr10:111628167	T	NA	28	0	28	67.821	3.621	0	0	0	28	0	XPNPEP1	intronic	NA
RCC_T3--3	chr10:111628167	T	A	28	0.250	21	66.190	7.474	7	65.857	3.848	21	7	XPNPEP1	intronic	NA
RCC_T3--4	chr10:111628167	T	NA	39	0	39	66.769	8.502	0	0	0	39	0	XPNPEP1	intronic	NA
RCC_T3--5	chr10:111628167	T	NA	32	0	32	67.000	5.218	0	0	0	32	0	XPNPEP1	intronic	NA
RCC_T3--6	chr10:111628167	T	NA	32	0	32	66.281	5.805	0	0	0	32	0	XPNPEP1	intronic	NA
RCC_T3--7	chr10:111628167	T	NA	30	0	30	67.400	3.874	0	0	0	30	0	XPNPEP1	intronic	NA
RCC_T3--8	chr10:111628167	T	NA	47	0	47	67.064	5.032	0	0	0	47	0	XPNPEP1	intronic	NA
RCC_T3--GL	chr10:111628167	T	NA	33	0	33	64.394	7.058	0	0	0	33	0	XPNPEP1	intronic	NA
RCC_T3--1	chr10:111642135	C	NA	28	0	28	67.893	3.047	0	0	0	28	0	XPNPEP1	intronic	NA
RCC_T3--2	chr10:111642135	C	A	35	0.114	31	66.645	7.365	4	68.250	4.500	31	4	XPNPEP1	intronic	NA
RCC_T3--3	chr10:111642135	C	NA	40	0	40	66.275	6.373	0	0	0	40	0	XPNPEP1	intronic	NA
RCC_T3--4	chr10:111642135	C	NA	45	0	45	68.889	3.200	0	0	0	45	0	XPNPEP1	intronic	NA
RCC_T3--5	chr10:111642135	C	NA	51	0	51	66.843	4.333	0	0	0	51	0	XPNPEP1	intronic	NA
RCC_T3--6	chr10:111642135	C	NA	34	0	34	65.471	9.281	0	0	0	34	0	XPNPEP1	intronic	NA
RCC_T3--7	chr10:111642135	C	NA	53	0	53	68.358	3.633	0	0	0	53	0	XPNPEP1	intronic	NA
RCC_T3--8	chr10:111642135	C	NA	20	0	20	69.000	2.920	0	0	0	20	0	XPNPEP1	intronic	NA
RCC_T3--GL	chr10:111642135	C	NA	45	0	45	67.711	5.328	0	0	0	45	0	XPNPEP1	intronic	NA
RCC_T3--1	chr10:111647922	C	NA	36	0	36	67.417	5.310	0	0	0	36	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--2	chr10:111647922	C	NA	31	0	31	64.581	9.327	0	0	0	31	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--3	chr10:111647922	C	NA	33	0	33	66.121	9.433	0	0	0	33	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--4	chr10:111647922	C	A	32	0.125	28	65.643	7.067	4	64.000	1.826	28	4	XPNPEP1	exonic	synonymous_SNV
RCC_T3--5	chr10:111647922	C	NA	42	0	42	66.929	6.627	0	0	0	42	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--6	chr10:111647922	C	NA	43	0	43	66.326	5.772	0	0	0	43	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--7	chr10:111647922	C	NA	53	0	53	67.623	4.888	0	0	0	53	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--8	chr10:111647922	C	NA	24	0	24	67.750	3.152	0	0	0	24	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--GL	chr10:111647922	C	NA	42	0	42	64.643	7.311	0	0	0	42	0	XPNPEP1	exonic	synonymous_SNV
RCC_T3--1	chr10:121212294	T	NA	32	0	32	67.531	3.601	0	0	0	32	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:121212294	T	C	33	0.152	28	67.679	5.019	5	51.200	14.772	28	5	GRK5	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:121212294	T	NA	23	0	23	65.435	7.710	0	0	0	23	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:121212294	T	NA	34	0	34	66.882	4.382	0	0	0	34	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:121212294	T	NA	22	0	22	67.273	4.267	0	0	0	22	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:121212294	T	NA	39	0	39	66.410	7.010	0	0	0	39	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:121212294	T	NA	35	0	35	67.000	5.750	0	0	0	35	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:121212294	T	NA	26	0	26	65.462	7.669	0	0	0	26	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:121212294	T	NA	36	0	36	66.167	7.323	0	0	0	36	0	GRK5	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:13198688	G	NA	39	0	39	68.692	3.533	0	0	0	39	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--2	chr10:13198688	G	NA	47	0	47	68.362	6.680	0	0	0	47	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--3	chr10:13198688	G	NA	79	0	79	67.823	5.740	0	0	0	79	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--4	chr10:13198688	G	NA	53	0	53	68.151	5.119	0	0	0	53	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--5	chr10:13198688	G	NA	32	0	32	68.281	3.265	0	0	0	32	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--6	chr10:13198688	G	NA	61	0	61	68.066	3.516	0	0	0	61	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--7	chr10:13198688	G	NA	44	0	44	67.614	6.266	0	0	0	44	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--8	chr10:13198688	G	A	53	0.113	47	68.043	5.200	6	65.167	7.574	47	6	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--GL	chr10:13198688	G	NA	62	0	62	65.919	7.488	0	0	0	62	0	OPTN(dist=18412),MCM10(dist=4866)	intergenic	NA
RCC_T3--1	chr10:134648988	C	NA	16	0	16	64.312	11.253	0	0	0	16	0	TTC40	intronic	NA
RCC_T3--2	chr10:134648988	C	NA	24	0	24	67.583	2.962	0	0	0	24	0	TTC40	intronic	NA
RCC_T3--3	chr10:134648988	C	NA	26	0	26	66.154	8.288	0	0	0	26	0	TTC40	intronic	NA
RCC_T3--4	chr10:134648988	C	NA	29	0	29	68.000	4.226	0	0	0	29	0	TTC40	intronic	NA
RCC_T3--5	chr10:134648988	C	NA	26	0	26	67.885	3.670	0	0	0	26	0	TTC40	intronic	NA
RCC_T3--6	chr10:134648988	C	NA	28	0	28	64.643	9.723	0	0	0	28	0	TTC40	intronic	NA
RCC_T3--7	chr10:134648988	C	NA	22	0	22	66.864	5.890	0	0	0	22	0	TTC40	intronic	NA
RCC_T3--8	chr10:134648988	C	T	35	0.114	31	66.258	7.109	4	65.750	5.058	31	4	TTC40	intronic	NA
RCC_T3--GL	chr10:134648988	C	NA	33	0	33	62.364	10.009	0	0	0	33	0	TTC40	intronic	NA
RCC_T3--1	chr10:17151767	A	G	47	0.404	28	68.143	6.060	19	69.105	3.843	28	19	CUBN	intronic	NA
RCC_T3--2	chr10:17151767	A	G	44	0.159	37	69.405	3.452	7	65.857	12.048	37	7	CUBN	intronic	NA
RCC_T3--3	chr10:17151767	A	G	40	0.275	29	68.448	3.334	11	67.818	3.790	29	11	CUBN	intronic	NA
RCC_T3--4	chr10:17151767	A	G	39	0.128	34	68.941	3.498	5	69.200	1.643	34	5	CUBN	intronic	NA
RCC_T3--5	chr10:17151767	A	G	33	0.030	32	69.094	3.104	1	71.000	0.000	32	1	CUBN	intronic	NA
RCC_T3--6	chr10:17151767	A	G	32	0.062	30	69.133	2.849	2	66.000	1.414	30	2	CUBN	intronic	NA
RCC_T3--7	chr10:17151767	A	G	44	0.250	33	68.273	3.851	11	68.455	3.110	33	11	CUBN	intronic	NA
RCC_T3--8	chr10:17151767	A	G	47	0.234	36	67.833	3.325	11	66.636	5.390	36	11	CUBN	intronic	NA
RCC_T3--GL	chr10:17151767	A	NA	58	0	58	67.431	5.061	0	0	0	58	0	CUBN	intronic	NA
RCC_T3--1	chr10:22856502	C	NA	44	0	44	68.659	2.885	0	0	0	44	0	PIP4K2A	intronic	NA
RCC_T3--2	chr10:22856502	C	A	51	0.118	45	67.733	4.245	6	69.000	4.195	45	6	PIP4K2A	intronic	NA
RCC_T3--3	chr10:22856502	C	NA	57	0	57	67.105	6.643	0	0	0	57	0	PIP4K2A	intronic	NA
RCC_T3--4	chr10:22856502	C	NA	68	0	67	67.537	5.876	0	0	0	67	0	PIP4K2A	intronic	NA
RCC_T3--5	chr10:22856502	C	NA	57	0	57	66.140	8.342	0	0	0	57	0	PIP4K2A	intronic	NA
RCC_T3--6	chr10:22856502	C	NA	57	0	57	68.035	3.428	0	0	0	57	0	PIP4K2A	intronic	NA
RCC_T3--7	chr10:22856502	C	NA	77	0	77	66.078	8.106	0	0	0	77	0	PIP4K2A	intronic	NA
RCC_T3--8	chr10:22856502	C	NA	56	0	56	67.232	4.721	0	0	0	56	0	PIP4K2A	intronic	NA
RCC_T3--GL	chr10:22856502	C	NA	58	0	58	65.845	7.018	0	0	0	58	0	PIP4K2A	intronic	NA
RCC_T3--1	chr10:24884780	A	G	133	0.113	71	66.380	5.915	15	64.600	8.895	71	15	ARHGAP21	intronic	NA
RCC_T3--2	chr10:24884780	A	G	171	0.018	103	66.398	7.134	3	65.667	1.155	103	3	ARHGAP21	intronic	NA
RCC_T3--3	chr10:24884780	A	G	233	0.060	124	66.387	4.632	14	64.500	7.803	124	14	ARHGAP21	intronic	NA
RCC_T3--4	chr10:24884780	A	G	161	0.050	92	65.815	7.941	8	59.250	12.209	92	8	ARHGAP21	intronic	NA
RCC_T3--5	chr10:24884780	A	G	158	0.082	98	65.541	7.710	13	61.692	12.236	98	13	ARHGAP21	intronic	NA
RCC_T3--6	chr10:24884780	A	G	197	0.036	120	65.675	7.006	7	64.143	3.024	120	7	ARHGAP21	intronic	NA
RCC_T3--7	chr10:24884780	A	G	212	0.080	118	66.678	6.177	17	66.235	5.166	118	17	ARHGAP21	intronic	NA
RCC_T3--8	chr10:24884780	A	G	169	0.047	98	66.663	5.779	8	64.875	2.416	98	8	ARHGAP21	intronic	NA
RCC_T3--GL	chr10:24884780	A	NA	174	0	98	64.643	8.475	0	0	0	98	0	ARHGAP21	intronic	NA
RCC_T3--1	chr10:37508096	G	A	547	0.210	432	69.236	4.371	115	69.383	4.101	432	115	ANKRD30A	exonic	synonymous_SNV
RCC_T3--2	chr10:37508096	G	A	477	0.187	388	69.351	3.835	89	69.449	4.301	388	89	ANKRD30A	exonic	synonymous_SNV
RCC_T3--3	chr10:37508096	G	A	665	0.218	520	69.029	4.755	145	69.276	3.933	520	145	ANKRD30A	exonic	synonymous_SNV
RCC_T3--4	chr10:37508096	G	A	543	0.236	414	68.983	4.642	128	69.672	3.377	414	128	ANKRD30A	exonic	synonymous_SNV
RCC_T3--5	chr10:37508096	G	A	587	0.039	564	68.582	5.048	23	68.870	4.320	564	23	ANKRD30A	exonic	synonymous_SNV
RCC_T3--6	chr10:37508096	G	A	711	0.103	637	68.476	5.390	73	69.726	3.330	637	73	ANKRD30A	exonic	synonymous_SNV
RCC_T3--7	chr10:37508096	G	A	729	0.214	572	69.133	4.660	156	69.974	4.298	572	156	ANKRD30A	exonic	synonymous_SNV
RCC_T3--8	chr10:37508096	G	A	539	0.202	430	69.137	4.130	109	69.000	4.405	430	109	ANKRD30A	exonic	synonymous_SNV
RCC_T3--GL	chr10:37508096	G	NA	683	0	683	68.165	4.988	0	0	0	683	0	ANKRD30A	exonic	synonymous_SNV
RCC_T3--1	chr10:47658548	T	NA	35	0	35	66.486	7.056	0	0	0	35	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:47658548	T	NA	34	0	34	67.324	2.889	0	0	0	34	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:47658548	T	A	40	0.150	34	66.618	5.075	6	67.667	2.805	34	6	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:47658548	T	NA	63	0	63	65.524	6.518	0	0	0	63	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:47658548	T	NA	31	0	31	67.613	3.827	0	0	0	31	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:47658548	T	NA	59	0	59	64.881	6.703	0	0	0	59	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:47658548	T	NA	45	0	45	67.844	4.632	0	0	0	45	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:47658548	T	NA	42	0	42	66.381	6.724	0	0	0	42	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:47658548	T	NA	42	0	42	65.857	4.562	0	0	0	42	0	ANTXRL	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:49804765	C	NA	32	0	32	65.531	6.711	0	0	0	32	0	ARHGAP22	intronic	NA
RCC_T3--2	chr10:49804765	C	NA	60	0	60	65.583	4.064	0	0	0	60	0	ARHGAP22	intronic	NA
RCC_T3--3	chr10:49804765	C	NA	38	0	38	65.053	4.597	0	0	0	38	0	ARHGAP22	intronic	NA
RCC_T3--4	chr10:49804765	C	NA	54	0	54	64.037	8.986	0	0	0	54	0	ARHGAP22	intronic	NA
RCC_T3--5	chr10:49804765	C	NA	33	0	33	64.455	6.442	0	0	0	33	0	ARHGAP22	intronic	NA
RCC_T3--6	chr10:49804765	C	NA	33	0	33	65.909	5.865	0	0	0	33	0	ARHGAP22	intronic	NA
RCC_T3--7	chr10:49804765	C	NA	34	0	34	63.676	6.763	0	0	0	34	0	ARHGAP22	intronic	NA
RCC_T3--8	chr10:49804765	C	A	32	0.125	28	65.071	4.320	4	66.250	2.363	28	4	ARHGAP22	intronic	NA
RCC_T3--GL	chr10:49804765	C	NA	33	0	33	63.212	8.649	0	0	0	33	0	ARHGAP22	intronic	NA
RCC_T3--1	chr10:50534130	C	NA	25	0	25	65.640	6.957	0	0	0	25	0	C10orf71	exonic	synonymous_SNV
RCC_T3--2	chr10:50534130	C	NA	20	0	20	67.850	3.100	0	0	0	20	0	C10orf71	exonic	synonymous_SNV
RCC_T3--3	chr10:50534130	C	A	31	0.129	27	67.074	3.922	4	64.500	3.109	27	4	C10orf71	exonic	synonymous_SNV
RCC_T3--4	chr10:50534130	C	NA	31	0	31	66.355	7.830	0	0	0	31	0	C10orf71	exonic	synonymous_SNV
RCC_T3--5	chr10:50534130	C	NA	32	0	32	66.656	7.798	0	0	0	32	0	C10orf71	exonic	synonymous_SNV
RCC_T3--6	chr10:50534130	C	NA	38	0	38	64.947	7.537	0	0	0	38	0	C10orf71	exonic	synonymous_SNV
RCC_T3--7	chr10:50534130	C	NA	34	0	34	65.353	7.206	0	0	0	34	0	C10orf71	exonic	synonymous_SNV
RCC_T3--8	chr10:50534130	C	NA	37	0	37	63.135	9.779	0	0	0	37	0	C10orf71	exonic	synonymous_SNV
RCC_T3--GL	chr10:50534130	C	NA	33	0	33	65.697	6.391	0	0	0	33	0	C10orf71	exonic	synonymous_SNV
RCC_T3--1	chr10:50824594	C	NA	36	0	36	66.917	4.218	0	0	0	36	0	CHAT	exonic	synonymous_SNV
RCC_T3--2	chr10:50824594	C	A	30	0.133	26	67.923	3.783	4	66.000	1.155	26	4	CHAT	exonic	synonymous_SNV
RCC_T3--3	chr10:50824594	C	NA	47	0	47	65.872	6.784	0	0	0	47	0	CHAT	exonic	synonymous_SNV
RCC_T3--4	chr10:50824594	C	NA	45	0	45	67.711	3.622	0	0	0	45	0	CHAT	exonic	synonymous_SNV
RCC_T3--5	chr10:50824594	C	NA	29	0	29	65.724	7.314	0	0	0	29	0	CHAT	exonic	synonymous_SNV
RCC_T3--6	chr10:50824594	C	NA	42	0	42	66.286	6.038	0	0	0	42	0	CHAT	exonic	synonymous_SNV
RCC_T3--7	chr10:50824594	C	NA	52	0	52	66.173	7.666	0	0	0	52	0	CHAT	exonic	synonymous_SNV
RCC_T3--8	chr10:50824594	C	NA	44	0	44	67.182	4.530	0	0	0	44	0	CHAT	exonic	synonymous_SNV
RCC_T3--GL	chr10:50824594	C	NA	46	0	46	63.913	7.571	0	0	0	46	0	CHAT	exonic	synonymous_SNV
RCC_T3--1	chr10:52067129	T	NA	29	0	29	69.000	3.901	0	0	0	29	0	SGMS1	intronic	NA
RCC_T3--2	chr10:52067129	T	A	39	0.128	34	68.088	3.613	5	68.000	0.000	34	5	SGMS1	intronic	NA
RCC_T3--3	chr10:52067129	T	NA	21	0	21	67.857	3.582	0	0	0	21	0	SGMS1	intronic	NA
RCC_T3--4	chr10:52067129	T	NA	23	0	23	69.174	2.871	0	0	0	23	0	SGMS1	intronic	NA
RCC_T3--5	chr10:52067129	T	NA	49	0	49	66.571	4.262	0	0	0	49	0	SGMS1	intronic	NA
RCC_T3--6	chr10:52067129	T	NA	61	0	61	67.738	3.786	0	0	0	61	0	SGMS1	intronic	NA
RCC_T3--7	chr10:52067129	T	NA	41	0	41	66.829	6.644	0	0	0	41	0	SGMS1	intronic	NA
RCC_T3--8	chr10:52067129	T	NA	51	0	51	67.804	4.561	0	0	0	51	0	SGMS1	intronic	NA
RCC_T3--GL	chr10:52067129	T	NA	36	0	36	67.472	3.931	0	0	0	36	0	SGMS1	intronic	NA
RCC_T3--1	chr10:5791986	C	NA	74	0	74	67.378	6.554	0	0	0	74	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:5791986	C	A	71	0.014	70	67.529	4.934	1	33.000	0.000	70	1	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:5791986	C	NA	75	0	75	67.813	7.019	0	0	0	75	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:5791986	C	NA	66	0	66	67.818	7.014	0	0	0	66	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:5791986	C	NA	58	0	58	68.190	5.799	0	0	0	58	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:5791986	C	NA	80	0	80	65.938	7.937	0	0	0	80	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:5791986	C	A	77	0.221	60	67.350	5.997	17	69.706	2.392	60	17	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:5791986	C	NA	62	0	62	65.177	9.730	0	0	0	62	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:5791986	C	NA	72	0	71	67.352	6.118	0	0	0	71	0	FAM208B	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:60558787	A	NA	71	0	71	68.479	5.601	0	0	0	71	0	BICC1	intronic	NA
RCC_T3--2	chr10:60558787	A	C	73	0.137	63	68.952	3.986	10	70.700	1.418	63	10	BICC1	intronic	NA
RCC_T3--3	chr10:60558787	A	NA	79	0	79	68.494	5.235	0	0	0	79	0	BICC1	intronic	NA
RCC_T3--4	chr10:60558787	A	NA	78	0	78	69.333	3.870	0	0	0	78	0	BICC1	intronic	NA
RCC_T3--5	chr10:60558787	A	NA	69	0	69	68.478	3.437	0	0	0	69	0	BICC1	intronic	NA
RCC_T3--6	chr10:60558787	A	NA	89	0	89	67.427	5.343	0	0	0	89	0	BICC1	intronic	NA
RCC_T3--7	chr10:60558787	A	NA	106	0	106	68.038	3.815	0	0	0	106	0	BICC1	intronic	NA
RCC_T3--8	chr10:60558787	A	NA	75	0	75	69.187	3.638	0	0	0	75	0	BICC1	intronic	NA
RCC_T3--GL	chr10:60558787	A	NA	84	0	84	67.345	7.005	0	0	0	84	0	BICC1	intronic	NA
RCC_T3--1	chr10:71683612	G	NA	22	0	22	67.545	4.228	0	0	0	22	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--2	chr10:71683612	G	NA	50	0	50	67.000	6.027	0	0	0	50	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--3	chr10:71683612	G	NA	36	0	36	67.389	4.655	0	0	0	36	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--4	chr10:71683612	G	NA	42	0	42	65.214	6.690	0	0	0	42	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--5	chr10:71683612	G	NA	54	0	54	66.204	5.816	0	0	0	54	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--6	chr10:71683612	G	NA	43	0	43	63.698	9.770	0	0	0	43	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--7	chr10:71683612	G	A	37	0.108	33	64.030	8.383	4	65.500	5.447	33	4	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--8	chr10:71683612	G	NA	35	0	35	66.657	8.502	0	0	0	35	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--GL	chr10:71683612	G	NA	44	0	44	66.477	6.219	0	0	0	44	0	COL13A1(NM_001130103:exon23:c.1251+1G>A,NM_080805:exon20:c.1098+1G>A,NM_080802:exon22:c.1185+1G>A,NM_080798:exon19:c.1080+1G>A,NM_080800:exon22:c.1194+1G>A,NM_080801:exon22:c.1185+1G>A)	splicing	NA
RCC_T3--1	chr10:72503388	G	A	29	0.138	25	64.960	7.185	4	65.750	4.272	25	4	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:72503388	G	NA	47	0	47	65.872	5.042	0	0	0	47	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:72503388	G	NA	48	0	48	64.146	7.155	0	0	0	48	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:72503388	G	NA	36	0	36	63.694	10.362	0	0	0	36	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:72503388	G	NA	33	0	33	65.182	8.103	0	0	0	33	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:72503388	G	NA	32	0	32	61.938	10.460	0	0	0	32	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:72503388	G	NA	36	0	36	65.389	6.975	0	0	0	36	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:72503388	G	NA	24	0	24	63.792	8.516	0	0	0	24	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:72503388	G	NA	33	0	33	63.667	6.397	0	0	0	33	0	ADAMTS14	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:7777031	C	A	37	0.108	33	68.667	3.515	4	67.250	2.062	33	4	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--2	chr10:7777031	C	NA	42	0	42	66.667	7.149	0	0	0	42	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--3	chr10:7777031	C	NA	31	0	31	66.645	7.670	0	0	0	31	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--4	chr10:7777031	C	NA	45	0	45	66.911	6.342	0	0	0	45	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--5	chr10:7777031	C	NA	35	0	35	67.571	3.509	0	0	0	35	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--6	chr10:7777031	C	NA	47	0	47	63.936	11.444	0	0	0	47	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--7	chr10:7777031	C	NA	33	0	33	66.515	6.510	0	0	0	33	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--8	chr10:7777031	C	NA	45	0	45	67.533	3.709	0	0	0	45	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr10:7777031	C	NA	42	0	42	66.071	5.554	0	0	0	42	0	ITIH2	exonic	nonsynonymous_SNV
RCC_T3--1	chr10:79742632	C	NA	36	0	36	67.333	3.657	0	0	0	36	0	POLR3A	intronic	NA
RCC_T3--2	chr10:79742632	C	NA	44	0	44	67.977	3.891	0	0	0	44	0	POLR3A	intronic	NA
RCC_T3--3	chr10:79742632	C	NA	58	0	58	67.259	4.166	0	0	0	58	0	POLR3A	intronic	NA
RCC_T3--4	chr10:79742632	C	NA	52	0	52	68.212	3.397	0	0	0	52	0	POLR3A	intronic	NA
RCC_T3--5	chr10:79742632	C	A	49	0.122	43	67.535	3.369	6	65.833	1.329	43	6	POLR3A	intronic	NA
RCC_T3--6	chr10:79742632	C	NA	39	0	39	67.641	4.487	0	0	0	39	0	POLR3A	intronic	NA
RCC_T3--7	chr10:79742632	C	NA	40	0	40	67.475	3.588	0	0	0	40	0	POLR3A	intronic	NA
RCC_T3--8	chr10:79742632	C	NA	46	0	46	68.239	3.199	0	0	0	46	0	POLR3A	intronic	NA
RCC_T3--GL	chr10:79742632	C	NA	40	0	40	64.800	8.962	0	0	0	40	0	POLR3A	intronic	NA
RCC_T3--1	chr10:88452388	G	NA	46	0	45	67.933	4.387	0	0	0	45	0	LDB3	intronic	NA
RCC_T3--2	chr10:88452388	G	NA	52	0	52	68.385	4.433	0	0	0	52	0	LDB3	intronic	NA
RCC_T3--3	chr10:88452388	G	T	37	0.108	33	67.485	4.317	4	63.750	7.890	33	4	LDB3	intronic	NA
RCC_T3--4	chr10:88452388	G	NA	46	0	46	67.217	6.902	0	0	0	46	0	LDB3	intronic	NA
RCC_T3--5	chr10:88452388	G	NA	51	0	51	65.020	7.092	0	0	0	51	0	LDB3	intronic	NA
RCC_T3--6	chr10:88452388	G	NA	63	0	63	65.429	5.983	0	0	0	63	0	LDB3	intronic	NA
RCC_T3--7	chr10:88452388	G	NA	59	0	59	66.186	7.128	0	0	0	59	0	LDB3	intronic	NA
RCC_T3--8	chr10:88452388	G	NA	53	0	53	64.925	8.535	0	0	0	53	0	LDB3	intronic	NA
RCC_T3--GL	chr10:88452388	G	NA	57	0	57	66.807	5.905	0	0	0	57	0	LDB3	intronic	NA
RCC_T3--1	chr10:93711053	C	NA	17	0	17	67.706	3.549	0	0	0	17	0	BTAF1	intronic	NA
RCC_T3--2	chr10:93711053	C	NA	18	0	18	68.667	5.202	0	0	0	18	0	BTAF1	intronic	NA
RCC_T3--3	chr10:93711053	C	A	20	0.150	17	68.059	5.994	3	62.000	0.000	17	3	BTAF1	intronic	NA
RCC_T3--4	chr10:93711053	C	NA	26	0	26	69.308	2.739	0	0	0	26	0	BTAF1	intronic	NA
RCC_T3--5	chr10:93711053	C	NA	25	0	25	69.320	3.805	0	0	0	25	0	BTAF1	intronic	NA
RCC_T3--6	chr10:93711053	C	NA	22	0	22	67.545	8.256	0	0	0	22	0	BTAF1	intronic	NA
RCC_T3--7	chr10:93711053	C	NA	18	0	18	69.500	3.730	0	0	0	18	0	BTAF1	intronic	NA
RCC_T3--8	chr10:93711053	C	NA	32	0	32	67.625	6.603	0	0	0	32	0	BTAF1	intronic	NA
RCC_T3--GL	chr10:93711053	C	NA	36	0	36	66.222	7.353	0	0	0	36	0	BTAF1	intronic	NA
RCC_T3--1	chr10:98819164	C	NA	16	0	16	67.062	3.605	0	0	0	16	0	SLIT1	intronic	NA
RCC_T3--2	chr10:98819164	C	T	27	0.148	23	66.217	4.502	4	61.000	8.287	23	4	SLIT1	intronic	NA
RCC_T3--3	chr10:98819164	C	NA	22	0	21	65.619	6.446	0	0	0	21	0	SLIT1	intronic	NA
RCC_T3--4	chr10:98819164	C	NA	28	0	28	62.357	10.566	0	0	0	28	0	SLIT1	intronic	NA
RCC_T3--5	chr10:98819164	C	NA	36	0	36	66.194	7.206	0	0	0	36	0	SLIT1	intronic	NA
RCC_T3--6	chr10:98819164	C	NA	27	0	27	64.222	8.984	0	0	0	27	0	SLIT1	intronic	NA
RCC_T3--7	chr10:98819164	C	NA	29	0	29	63.724	7.928	0	0	0	29	0	SLIT1	intronic	NA
RCC_T3--8	chr10:98819164	C	NA	28	0	28	64.179	8.899	0	0	0	28	0	SLIT1	intronic	NA
RCC_T3--GL	chr10:98819164	C	NA	40	0	40	63.725	8.067	0	0	0	40	0	SLIT1	intronic	NA
RCC_T3--1	chr10:99341058	C	NA	36	0	36	68.056	3.397	0	0	0	36	0	ANKRD2	intronic	NA
RCC_T3--2	chr10:99341058	C	A	67	0.134	58	65.828	7.004	9	67.333	3.606	58	9	ANKRD2	intronic	NA
RCC_T3--3	chr10:99341058	C	NA	68	0	68	66.176	4.186	0	0	0	68	0	ANKRD2	intronic	NA
RCC_T3--4	chr10:99341058	C	NA	65	0	65	66.985	6.979	0	0	0	65	0	ANKRD2	intronic	NA
RCC_T3--5	chr10:99341058	C	NA	59	0	59	67.322	6.434	0	0	0	59	0	ANKRD2	intronic	NA
RCC_T3--6	chr10:99341058	C	NA	63	0	63	66.016	8.017	0	0	0	63	0	ANKRD2	intronic	NA
RCC_T3--7	chr10:99341058	C	NA	51	0	51	64.333	9.499	0	0	0	51	0	ANKRD2	intronic	NA
RCC_T3--8	chr10:99341058	C	NA	64	0	64	66.531	7.233	0	0	0	64	0	ANKRD2	intronic	NA
RCC_T3--GL	chr10:99341058	C	NA	79	0	79	66.241	5.871	0	0	0	79	0	ANKRD2	intronic	NA
RCC_T3--1	chr1:100185251	T	NA	45	0	45	67.222	4.963	0	0	0	45	0	FRRS1	intronic	NA
RCC_T3--2	chr1:100185251	T	NA	40	0	40	66.025	5.964	0	0	0	40	0	FRRS1	intronic	NA
RCC_T3--3	chr1:100185251	T	NA	56	0	56	66.643	5.919	0	0	0	56	0	FRRS1	intronic	NA
RCC_T3--4	chr1:100185251	T	NA	44	0	44	66.886	5.719	0	0	0	44	0	FRRS1	intronic	NA
RCC_T3--5	chr1:100185251	T	NA	54	0	54	66.019	4.533	0	0	0	54	0	FRRS1	intronic	NA
RCC_T3--6	chr1:100185251	T	NA	74	0	74	66.216	6.032	0	0	0	74	0	FRRS1	intronic	NA
RCC_T3--7	chr1:100185251	T	NA	52	0	51	67.471	4.751	0	0	0	51	0	FRRS1	intronic	NA
RCC_T3--8	chr1:100185251	T	C	47	0.128	41	67.146	5.673	6	69.333	2.582	41	6	FRRS1	intronic	NA
RCC_T3--GL	chr1:100185251	T	NA	53	0	53	63.962	7.560	0	0	0	53	0	FRRS1	intronic	NA
RCC_T3--1	chr11:1016312	G	NA	35	0	35	67.057	2.765	0	0	0	35	0	MUC6	exonic	synonymous_SNV
RCC_T3--2	chr11:1016312	G	NA	55	0	55	66.836	6.121	0	0	0	55	0	MUC6	exonic	synonymous_SNV
RCC_T3--3	chr11:1016312	G	A	48	0.125	42	65.619	4.439	6	68.667	3.724	42	6	MUC6	exonic	synonymous_SNV
RCC_T3--4	chr11:1016312	G	NA	50	0	50	67.020	2.952	0	0	0	50	0	MUC6	exonic	synonymous_SNV
RCC_T3--5	chr11:1016312	G	NA	48	0	48	64.229	6.685	0	0	0	48	0	MUC6	exonic	synonymous_SNV
RCC_T3--6	chr11:1016312	G	NA	66	0	66	63.439	7.861	0	0	0	66	0	MUC6	exonic	synonymous_SNV
RCC_T3--7	chr11:1016312	G	NA	44	0	44	66.000	4.575	0	0	0	44	0	MUC6	exonic	synonymous_SNV
RCC_T3--8	chr11:1016312	G	NA	51	0	51	65.353	7.858	0	0	0	51	0	MUC6	exonic	synonymous_SNV
RCC_T3--GL	chr11:1016312	G	NA	59	0	59	65.407	5.712	0	0	0	59	0	MUC6	exonic	synonymous_SNV
RCC_T3--1	chr11:102585946	C	NA	30	0	30	68.900	3.111	0	0	0	30	0	MMP8	intronic	NA
RCC_T3--2	chr11:102585946	C	NA	46	0	46	68.826	4.567	0	0	0	46	0	MMP8	intronic	NA
RCC_T3--3	chr11:102585946	C	NA	38	0	38	66.579	6.537	0	0	0	38	0	MMP8	intronic	NA
RCC_T3--4	chr11:102585946	C	A	50	0.140	43	67.977	4.778	7	63.286	4.348	43	7	MMP8	intronic	NA
RCC_T3--5	chr11:102585946	C	NA	49	0	49	66.673	7.768	0	0	0	49	0	MMP8	intronic	NA
RCC_T3--6	chr11:102585946	C	NA	42	0	42	65.524	6.660	0	0	0	42	0	MMP8	intronic	NA
RCC_T3--7	chr11:102585946	C	NA	42	0	42	67.595	4.537	0	0	0	42	0	MMP8	intronic	NA
RCC_T3--8	chr11:102585946	C	NA	45	0	45	66.933	5.056	0	0	0	45	0	MMP8	intronic	NA
RCC_T3--GL	chr11:102585946	C	NA	44	0	44	67.455	4.516	0	0	0	44	0	MMP8	intronic	NA
RCC_T3--1	chr11:10521899	G	NA	20	0	20	67.700	3.294	0	0	0	20	0	AMPD3	intronic	NA
RCC_T3--2	chr11:10521899	G	A	28	0.143	24	66.375	4.880	4	62.750	1.500	24	4	AMPD3	intronic	NA
RCC_T3--3	chr11:10521899	G	NA	29	0	29	66.483	5.117	0	0	0	29	0	AMPD3	intronic	NA
RCC_T3--4	chr11:10521899	G	NA	30	0	30	66.133	6.720	0	0	0	30	0	AMPD3	intronic	NA
RCC_T3--5	chr11:10521899	G	NA	14	0	14	65.571	5.287	0	0	0	14	0	AMPD3	intronic	NA
RCC_T3--6	chr11:10521899	G	NA	28	0	28	64.214	8.364	0	0	0	28	0	AMPD3	intronic	NA
RCC_T3--7	chr11:10521899	G	NA	22	0	22	66.636	4.766	0	0	0	22	0	AMPD3	intronic	NA
RCC_T3--8	chr11:10521899	G	NA	28	0	28	65.893	7.918	0	0	0	28	0	AMPD3	intronic	NA
RCC_T3--GL	chr11:10521899	G	NA	34	0	34	64.971	6.957	0	0	0	34	0	AMPD3	intronic	NA
RCC_T3--1	chr11:107300158	G	A	89	0.180	73	68.110	4.668	16	68.625	4.161	73	16	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:107300158	G	A	90	0.100	81	68.160	5.281	9	69.000	4.555	81	9	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:107300158	G	A	135	0.259	100	68.220	3.558	35	67.314	5.635	100	35	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:107300158	G	A	122	0.230	94	67.723	5.874	28	69.607	2.079	94	28	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:107300158	G	A	83	0.036	79	66.430	6.915	3	69.000	2.000	79	3	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:107300158	G	A	120	0.142	103	67.214	5.419	17	67.824	3.812	103	17	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:107300158	G	A	132	0.227	101	69.000	2.970	30	68.633	4.635	101	30	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:107300158	G	A	122	0.238	93	68.624	4.676	29	67.621	5.375	93	29	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:107300158	G	NA	134	0	134	67.022	5.621	0	0	0	134	0	CWF19L2	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:107420351	T	NA	24	0	24	65.292	6.321	0	0	0	24	0	ALKBH8	intronic	NA
RCC_T3--2	chr11:107420351	T	NA	37	0	37	65.270	5.086	0	0	0	37	0	ALKBH8	intronic	NA
RCC_T3--3	chr11:107420351	T	NA	31	0	31	63.742	6.613	0	0	0	31	0	ALKBH8	intronic	NA
RCC_T3--4	chr11:107420351	T	NA	35	0	35	65.514	4.931	0	0	0	35	0	ALKBH8	intronic	NA
RCC_T3--5	chr11:107420351	T	A	19	0.211	15	62.867	6.446	4	57.000	11.372	15	4	ALKBH8	intronic	NA
RCC_T3--6	chr11:107420351	T	NA	26	0	26	66.154	3.146	0	0	0	26	0	ALKBH8	intronic	NA
RCC_T3--7	chr11:107420351	T	NA	32	0	32	64.906	5.619	0	0	0	32	0	ALKBH8	intronic	NA
RCC_T3--8	chr11:107420351	T	NA	38	0	38	65.921	3.773	0	0	0	38	0	ALKBH8	intronic	NA
RCC_T3--GL	chr11:107420351	T	NA	41	0	41	62.463	7.284	0	0	0	41	0	ALKBH8	intronic	NA
RCC_T3--1	chr11:1092442	A	C	39	0.026	37	47.189	9.134	1	36.000	0.000	37	1	MUC2	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:1092442	A	C	47	0.106	41	51.073	10.671	5	36.800	3.701	41	5	MUC2	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:1092442	A	C	59	0.051	56	51.839	10.341	3	36.000	0.000	56	3	MUC2	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:1092442	A	C	51	0.059	48	50.896	9.485	3	38.333	4.041	48	3	MUC2	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:1092442	A	C	39	0.051	37	51.541	9.674	2	36.000	0.000	37	2	MUC2	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:1092442	A	C	38	0.184	31	49.000	9.612	7	36.143	0.378	31	7	MUC2	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:1092442	A	C	49	0.061	43	52.837	10.852	3	38.333	4.041	43	3	MUC2	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:1092442	A	C	45	0.022	43	51.047	10.245	1	43.000	0.000	43	1	MUC2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:1092442	A	NA	44	0	44	48.705	10.108	0	0	0	44	0	MUC2	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:1157710	G	NA	34	0	34	65.794	6.104	0	0	0	34	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--2	chr11:1157710	G	NA	68	0	68	64.588	7.835	0	0	0	68	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--3	chr11:1157710	G	NA	67	0	67	63.627	7.667	0	0	0	67	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--4	chr11:1157710	G	NA	73	0	73	65.288	5.415	0	0	0	73	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--5	chr11:1157710	G	A	54	0.111	47	62.213	9.804	6	62.500	8.479	47	6	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--6	chr11:1157710	G	NA	45	0	45	62.222	9.835	0	0	0	45	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--7	chr11:1157710	G	NA	70	0	70	65.829	4.715	0	0	0	70	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--8	chr11:1157710	G	NA	72	0	71	64.915	7.425	0	0	0	71	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--GL	chr11:1157710	G	NA	87	0	87	63.954	7.776	0	0	0	87	0	MUC2(dist=53294),MUC5B(dist=86585)	intergenic	NA
RCC_T3--1	chr11:118179069	C	NA	23	0	23	68.783	3.176	0	0	0	23	0	CD3E	intronic	NA
RCC_T3--2	chr11:118179069	C	NA	28	0	28	66.429	6.076	0	0	0	28	0	CD3E	intronic	NA
RCC_T3--3	chr11:118179069	C	A	22	0.182	18	68.333	2.612	4	63.250	3.862	18	4	CD3E	intronic	NA
RCC_T3--4	chr11:118179069	C	NA	34	0	34	68.235	4.979	0	0	0	34	0	CD3E	intronic	NA
RCC_T3--5	chr11:118179069	C	NA	18	0	18	65.667	6.380	0	0	0	18	0	CD3E	intronic	NA
RCC_T3--6	chr11:118179069	C	NA	33	0	33	67.697	4.419	0	0	0	33	0	CD3E	intronic	NA
RCC_T3--7	chr11:118179069	C	NA	34	0	34	67.912	3.646	0	0	0	34	0	CD3E	intronic	NA
RCC_T3--8	chr11:118179069	C	NA	31	0	31	68.129	3.713	0	0	0	31	0	CD3E	intronic	NA
RCC_T3--GL	chr11:118179069	C	NA	33	0	33	66.030	9.201	0	0	0	33	0	CD3E	intronic	NA
RCC_T3--1	chr11:118828269	C	A	40	0.125	35	68.229	3.532	5	67.800	2.588	35	5	UPK2	intronic	NA
RCC_T3--2	chr11:118828269	C	NA	60	0	60	67.017	5.739	0	0	0	60	0	UPK2	intronic	NA
RCC_T3--3	chr11:118828269	C	A	58	0.017	57	65.596	7.819	1	41.000	0.000	57	1	UPK2	intronic	NA
RCC_T3--4	chr11:118828269	C	NA	50	0	50	66.300	7.985	0	0	0	50	0	UPK2	intronic	NA
RCC_T3--5	chr11:118828269	C	NA	52	0	52	66.327	5.635	0	0	0	52	0	UPK2	intronic	NA
RCC_T3--6	chr11:118828269	C	NA	45	0	45	65.622	6.132	0	0	0	45	0	UPK2	intronic	NA
RCC_T3--7	chr11:118828269	C	NA	48	0	48	67.312	4.401	0	0	0	48	0	UPK2	intronic	NA
RCC_T3--8	chr11:118828269	C	NA	85	0	85	68.412	4.138	0	0	0	85	0	UPK2	intronic	NA
RCC_T3--GL	chr11:118828269	C	NA	51	0	51	66.118	8.160	0	0	0	51	0	UPK2	intronic	NA
RCC_T3--1	chr11:118940256	T	A	334	0.231	257	68.171	5.784	77	67.753	5.599	257	77	VPS11	exonic	unknown
RCC_T3--2	chr11:118940256	T	A	454	0.183	371	68.394	4.728	83	66.108	9.016	371	83	VPS11	exonic	unknown
RCC_T3--3	chr11:118940256	T	A	462	0.255	344	67.491	6.107	118	67.178	5.551	344	118	VPS11	exonic	unknown
RCC_T3--4	chr11:118940256	T	A	426	0.218	332	68.620	4.148	93	68.301	5.145	332	93	VPS11	exonic	unknown
RCC_T3--5	chr11:118940256	T	A	321	0.047	306	67.337	5.535	15	68.133	3.739	306	15	VPS11	exonic	unknown
RCC_T3--6	chr11:118940256	T	A	375	0.083	344	67.183	6.558	31	66.290	5.557	344	31	VPS11	exonic	unknown
RCC_T3--7	chr11:118940256	T	A	437	0.254	326	67.828	5.424	111	67.090	6.735	326	111	VPS11	exonic	unknown
RCC_T3--8	chr11:118940256	T	A	395	0.268	289	67.682	5.625	106	68.132	3.497	289	106	VPS11	exonic	unknown
RCC_T3--GL	chr11:118940256	T	NA	479	0	479	66.983	5.674	0	0	0	479	0	VPS11	exonic	unknown
RCC_T3--1	chr11:119002463	T	NA	38	0	38	67.605	6.344	0	0	0	38	0	HINFP	intronic	NA
RCC_T3--2	chr11:119002463	T	NA	38	0	38	68.342	3.566	0	0	0	38	0	HINFP	intronic	NA
RCC_T3--3	chr11:119002463	T	C	40	0.150	34	66.324	6.432	6	65.833	0.408	34	6	HINFP	intronic	NA
RCC_T3--4	chr11:119002463	T	NA	46	0	46	66.000	5.940	0	0	0	46	0	HINFP	intronic	NA
RCC_T3--5	chr11:119002463	T	NA	34	0	34	66.471	7.119	0	0	0	34	0	HINFP	intronic	NA
RCC_T3--6	chr11:119002463	T	NA	35	0	35	65.343	5.099	0	0	0	35	0	HINFP	intronic	NA
RCC_T3--7	chr11:119002463	T	NA	41	0	41	67.146	8.356	0	0	0	41	0	HINFP	intronic	NA
RCC_T3--8	chr11:119002463	T	NA	44	0	44	68.364	4.064	0	0	0	44	0	HINFP	intronic	NA
RCC_T3--GL	chr11:119002463	T	NA	49	0	49	65.571	5.553	0	0	0	49	0	HINFP	intronic	NA
RCC_T3--1	chr11:119228027	A	G	69	0.304	47	63.617	9.534	21	64.429	9.405	47	21	USP2	intronic	NA
RCC_T3--2	chr11:119228027	A	G	79	0.177	65	63.062	9.377	14	67.357	2.678	65	14	USP2	intronic	NA
RCC_T3--3	chr11:119228027	A	G	63	0.159	53	64.547	6.778	10	66.700	2.452	53	10	USP2	intronic	NA
RCC_T3--4	chr11:119228027	A	G	66	0.182	54	64.463	7.363	12	59.417	10.749	54	12	USP2	intronic	NA
RCC_T3--5	chr11:119228027	A	G	65	0.046	62	60.532	11.188	3	65.333	3.055	62	3	USP2	intronic	NA
RCC_T3--6	chr11:119228027	A	G	71	0.141	61	63.049	6.832	10	65.800	5.653	61	10	USP2	intronic	NA
RCC_T3--7	chr11:119228027	A	G	75	0.293	53	62.000	9.660	22	64.136	8.143	53	22	USP2	intronic	NA
RCC_T3--8	chr11:119228027	A	G	76	0.276	55	64.309	7.762	21	65.190	9.070	55	21	USP2	intronic	NA
RCC_T3--GL	chr11:119228027	A	NA	79	0	79	62.975	7.744	0	0	0	79	0	USP2	intronic	NA
RCC_T3--1	chr11:120827623	C	G	27	0.222	21	65.381	8.139	6	68.667	2.503	21	6	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:120827623	C	G	46	0.174	38	63.921	7.920	8	66.625	5.553	38	8	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:120827623	C	G	40	0.175	33	67.939	2.524	7	67.000	1.528	33	7	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:120827623	C	G	31	0.226	24	64.542	4.934	7	66.714	4.030	24	7	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:120827623	C	G	42	0.143	36	65.611	6.500	6	64.667	6.976	36	6	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:120827623	C	G	43	0.047	41	63.805	8.796	2	69.000	4.243	41	2	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:120827623	C	G	49	0.143	42	63.786	8.068	7	65.286	6.945	42	7	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:120827623	C	G	27	0.148	23	67.174	4.774	4	56.250	9.465	23	4	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:120827623	C	NA	36	0	36	65.472	7.323	0	0	0	36	0	GRIK4	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:129772400	C	NA	36	0	36	67.944	4.154	0	0	0	36	0	PRDM10	exonic	synonymous_SNV
RCC_T3--2	chr11:129772400	C	NA	62	0	62	67.435	3.911	0	0	0	62	0	PRDM10	exonic	synonymous_SNV
RCC_T3--3	chr11:129772400	C	NA	61	0	61	65.836	7.634	0	0	0	61	0	PRDM10	exonic	synonymous_SNV
RCC_T3--4	chr11:129772400	C	NA	47	0	47	66.660	4.887	0	0	0	47	0	PRDM10	exonic	synonymous_SNV
RCC_T3--5	chr11:129772400	C	NA	49	0	49	67.327	4.854	0	0	0	49	0	PRDM10	exonic	synonymous_SNV
RCC_T3--6	chr11:129772400	C	NA	43	0	43	66.488	4.817	0	0	0	43	0	PRDM10	exonic	synonymous_SNV
RCC_T3--7	chr11:129772400	C	NA	54	0	54	68.093	3.152	0	0	0	54	0	PRDM10	exonic	synonymous_SNV
RCC_T3--8	chr11:129772400	C	A	48	0.125	42	68.000	5.396	6	66.833	5.456	42	6	PRDM10	exonic	synonymous_SNV
RCC_T3--GL	chr11:129772400	C	NA	51	0	51	65.353	8.404	0	0	0	51	0	PRDM10	exonic	synonymous_SNV
RCC_T3--1	chr1:11338954	C	NA	28	0	28	63.714	9.760	0	0	0	28	0	UBIAD1	intronic	NA
RCC_T3--2	chr1:11338954	C	T	27	0.148	23	64.652	6.499	4	64.250	2.217	23	4	UBIAD1	intronic	NA
RCC_T3--3	chr1:11338954	C	NA	31	0	31	65.161	7.806	0	0	0	31	0	UBIAD1	intronic	NA
RCC_T3--4	chr1:11338954	C	NA	12	0	12	56.333	17.348	0	0	0	12	0	UBIAD1	intronic	NA
RCC_T3--5	chr1:11338954	C	T	14	0.071	13	53.462	16.246	1	47.000	0.000	13	1	UBIAD1	intronic	NA
RCC_T3--6	chr1:11338954	C	NA	21	0	21	55.619	15.204	0	0	0	21	0	UBIAD1	intronic	NA
RCC_T3--7	chr1:11338954	C	NA	24	0	24	62.042	14.309	0	0	0	24	0	UBIAD1	intronic	NA
RCC_T3--8	chr1:11338954	C	NA	28	0	28	61.679	11.817	0	0	0	28	0	UBIAD1	intronic	NA
RCC_T3--GL	chr1:11338954	C	NA	35	0	35	60.914	12.111	0	0	0	35	0	UBIAD1	intronic	NA
RCC_T3--1	chr1:114247172	C	A	35	0.114	31	67.710	5.081	4	68.750	3.304	31	4	PHTF1	intronic	NA
RCC_T3--2	chr1:114247172	C	NA	35	0	35	67.629	7.125	0	0	0	35	0	PHTF1	intronic	NA
RCC_T3--3	chr1:114247172	C	NA	34	0	34	68.382	3.924	0	0	0	34	0	PHTF1	intronic	NA
RCC_T3--4	chr1:114247172	C	NA	30	0	30	67.500	4.569	0	0	0	30	0	PHTF1	intronic	NA
RCC_T3--5	chr1:114247172	C	NA	24	0	24	69.000	3.323	0	0	0	24	0	PHTF1	intronic	NA
RCC_T3--6	chr1:114247172	C	NA	23	0	23	68.609	4.053	0	0	0	23	0	PHTF1	intronic	NA
RCC_T3--7	chr1:114247172	C	NA	39	0	39	66.077	7.958	0	0	0	39	0	PHTF1	intronic	NA
RCC_T3--8	chr1:114247172	C	NA	39	0	39	68.333	3.247	0	0	0	39	0	PHTF1	intronic	NA
RCC_T3--GL	chr1:114247172	C	NA	39	0	39	67.846	4.469	0	0	0	39	0	PHTF1	intronic	NA
RCC_T3--1	chr11:1475636	C	NA	54	0	54	66.611	5.075	0	0	0	54	0	BRSK2	intronic	NA
RCC_T3--2	chr11:1475636	C	T	37	0.108	33	64.758	6.951	4	67.250	3.775	33	4	BRSK2	intronic	NA
RCC_T3--3	chr11:1475636	C	NA	52	0	52	65.442	6.216	0	0	0	52	0	BRSK2	intronic	NA
RCC_T3--4	chr11:1475636	C	NA	40	0	40	68.525	3.623	0	0	0	40	0	BRSK2	intronic	NA
RCC_T3--5	chr11:1475636	C	NA	32	0	32	65.156	6.901	0	0	0	32	0	BRSK2	intronic	NA
RCC_T3--6	chr11:1475636	C	NA	41	0	40	64.500	7.629	0	0	0	40	0	BRSK2	intronic	NA
RCC_T3--7	chr11:1475636	C	NA	53	0	53	67.208	4.555	0	0	0	53	0	BRSK2	intronic	NA
RCC_T3--8	chr11:1475636	C	NA	50	0	50	64.720	7.074	0	0	0	50	0	BRSK2	intronic	NA
RCC_T3--GL	chr11:1475636	C	NA	41	0	41	63.732	8.686	0	0	0	41	0	BRSK2	intronic	NA
RCC_T3--1	chr11:16760399	A	NA	39	0	39	66.410	5.730	0	0	0	39	0	C11orf58	intronic	NA
RCC_T3--2	chr11:16760399	A	C	45	0.133	39	65.846	6.483	6	65.167	1.602	39	6	C11orf58	intronic	NA
RCC_T3--3	chr11:16760399	A	NA	47	0	47	65.000	6.811	0	0	0	47	0	C11orf58	intronic	NA
RCC_T3--4	chr11:16760399	A	NA	53	0	53	65.113	5.567	0	0	0	53	0	C11orf58	intronic	NA
RCC_T3--5	chr11:16760399	A	NA	61	0	61	64.705	6.507	0	0	0	61	0	C11orf58	intronic	NA
RCC_T3--6	chr11:16760399	A	NA	52	0	52	65.750	4.756	0	0	0	52	0	C11orf58	intronic	NA
RCC_T3--7	chr11:16760399	A	NA	64	0	64	67.281	4.460	0	0	0	64	0	C11orf58	intronic	NA
RCC_T3--8	chr11:16760399	A	NA	57	0	57	67.684	5.834	0	0	0	57	0	C11orf58	intronic	NA
RCC_T3--GL	chr11:16760399	A	NA	47	0	47	62.766	8.349	0	0	0	47	0	C11orf58	intronic	NA
RCC_T3--1	chr11:17250755	G	NA	19	0	19	66.053	5.349	0	0	0	19	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--2	chr11:17250755	G	NA	29	0	29	66.862	5.310	0	0	0	29	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--3	chr11:17250755	G	T	33	0.121	29	68.000	2.903	4	59.750	7.089	29	4	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--4	chr11:17250755	G	NA	35	0	35	66.457	5.601	0	0	0	35	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--5	chr11:17250755	G	NA	35	0	35	65.286	8.870	0	0	0	35	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--6	chr11:17250755	G	NA	26	0	26	68.308	3.095	0	0	0	26	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--7	chr11:17250755	G	NA	29	0	29	66.069	5.964	0	0	0	29	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--8	chr11:17250755	G	NA	26	0	26	67.692	4.856	0	0	0	26	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--GL	chr11:17250755	G	NA	46	0	46	66.022	6.510	0	0	0	46	0	PIK3C2A(dist=59401),NUCB2(dist=47531)	intergenic	NA
RCC_T3--1	chr1:1225696	T	G	24	0.083	22	67.273	4.377	2	47.000	19.799	22	2	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:1225696	T	G	38	0.289	27	66.000	5.076	11	60.273	14.043	27	11	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:1225696	T	G	34	0.206	27	65.407	7.500	7	66.000	1.633	27	7	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:1225696	T	G	33	0.242	25	65.880	4.693	8	63.875	12.620	25	8	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:1225696	T	G	29	0.034	28	63.071	9.487	1	66.000	0.000	28	1	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:1225696	T	G	53	0.019	52	64.885	6.964	1	62.000	0.000	52	1	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:1225696	T	G	29	0.207	23	63.696	10.877	6	60.000	14.832	23	6	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:1225696	T	G	37	0.135	32	66.000	5.406	5	68.200	3.033	32	5	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:1225696	T	NA	37	0	37	64.486	7.256	0	0	0	37	0	SCNN1D	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:32610737	T	NA	46	0	46	68.022	3.774	0	0	0	46	0	EIF3M	intronic	NA
RCC_T3--2	chr11:32610737	T	NA	49	0	48	67.521	3.018	0	0	0	48	0	EIF3M	intronic	NA
RCC_T3--3	chr11:32610737	T	NA	46	0	46	67.326	5.437	0	0	0	46	0	EIF3M	intronic	NA
RCC_T3--4	chr11:32610737	T	A	45	0.022	44	68.205	3.567	1	72.000	0.000	44	1	EIF3M	intronic	NA
RCC_T3--5	chr11:32610737	T	A	48	0.042	46	67.630	3.574	2	64.500	2.121	46	2	EIF3M	intronic	NA
RCC_T3--6	chr11:32610737	T	A	51	0.039	49	66.143	6.367	2	66.000	8.485	49	2	EIF3M	intronic	NA
RCC_T3--7	chr11:32610737	T	NA	51	0	51	67.882	4.353	0	0	0	51	0	EIF3M	intronic	NA
RCC_T3--8	chr11:32610737	T	A	59	0.119	52	66.788	6.111	7	64.571	4.577	52	7	EIF3M	intronic	NA
RCC_T3--GL	chr11:32610737	T	NA	60	0	59	65.746	7.143	0	0	0	59	0	EIF3M	intronic	NA
RCC_T3--1	chr11:33886276	C	NA	24	0	24	66.583	3.635	0	0	0	24	0	LMO2	exonic	synonymous_SNV
RCC_T3--2	chr11:33886276	C	NA	31	0	31	67.032	4.722	0	0	0	31	0	LMO2	exonic	synonymous_SNV
RCC_T3--3	chr11:33886276	C	NA	54	0	54	65.037	8.264	0	0	0	54	0	LMO2	exonic	synonymous_SNV
RCC_T3--4	chr11:33886276	C	NA	44	0	44	67.023	4.117	0	0	0	44	0	LMO2	exonic	synonymous_SNV
RCC_T3--5	chr11:33886276	C	A	29	0.172	24	67.667	3.908	5	64.400	4.393	24	5	LMO2	exonic	synonymous_SNV
RCC_T3--6	chr11:33886276	C	NA	39	0	39	66.897	3.059	0	0	0	39	0	LMO2	exonic	synonymous_SNV
RCC_T3--7	chr11:33886276	C	NA	56	0	56	66.732	3.878	0	0	0	56	0	LMO2	exonic	synonymous_SNV
RCC_T3--8	chr11:33886276	C	NA	41	0	41	66.268	3.613	0	0	0	41	0	LMO2	exonic	synonymous_SNV
RCC_T3--GL	chr11:33886276	C	NA	51	0	51	65.314	7.842	0	0	0	51	0	LMO2	exonic	synonymous_SNV
RCC_T3--1	chr11:3681159	A	NA	29	0	29	62.414	10.486	0	0	0	29	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:3681159	A	NA	36	0	36	62.389	10.494	0	0	0	36	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:3681159	A	NA	39	0	38	61.105	9.921	0	0	0	38	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:3681159	A	T	30	0.133	26	65.000	4.391	4	61.500	8.660	26	4	ART1	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:3681159	A	NA	24	0	24	57.125	13.791	0	0	0	24	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:3681159	A	NA	26	0	26	62.308	10.035	0	0	0	26	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:3681159	A	NA	33	0	32	63.312	8.731	0	0	0	32	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:3681159	A	NA	35	0	35	64.200	8.656	0	0	0	35	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:3681159	A	NA	43	0	43	60.535	11.147	0	0	0	43	0	ART1	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:380314	T	NA	50	0	50	64.820	6.712	0	0	0	50	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:380314	T	NA	45	0	45	63.822	8.643	0	0	0	45	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:380314	T	NA	42	0	42	65.262	5.570	0	0	0	42	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:380314	T	NA	44	0	44	63.818	8.010	0	0	0	44	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:380314	T	C	53	0.113	47	65.489	5.591	6	63.833	2.229	47	6	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:380314	T	C	52	0.019	51	64.412	8.537	1	33.000	0.000	51	1	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:380314	T	NA	62	0	62	62.774	9.169	0	0	0	62	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:380314	T	NA	68	0	68	66.397	6.060	0	0	0	68	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:380314	T	NA	75	0	75	65.347	5.615	0	0	0	75	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:404574	A	NA	34	0	34	65.500	7.059	0	0	0	34	0	PKP3	UTR3	NA
RCC_T3--2	chr11:404574	A	NA	42	0	42	63.762	10.257	0	0	0	42	0	PKP3	UTR3	NA
RCC_T3--3	chr11:404574	A	G	52	0.019	51	64.765	9.659	1	33.000	0.000	51	1	PKP3	UTR3	NA
RCC_T3--4	chr11:404574	A	NA	68	0	68	64.912	9.002	0	0	0	68	0	PKP3	UTR3	NA
RCC_T3--5	chr11:404574	A	NA	35	0	35	65.200	6.773	0	0	0	35	0	PKP3	UTR3	NA
RCC_T3--6	chr11:404574	A	G	46	0.130	40	64.575	9.215	6	61.167	10.187	40	6	PKP3	UTR3	NA
RCC_T3--7	chr11:404574	A	NA	50	0	50	65.280	5.288	0	0	0	50	0	PKP3	UTR3	NA
RCC_T3--8	chr11:404574	A	NA	40	0	40	65.825	5.625	0	0	0	40	0	PKP3	UTR3	NA
RCC_T3--GL	chr11:404574	A	NA	59	0	59	64.695	8.689	0	0	0	59	0	PKP3	UTR3	NA
RCC_T3--1	chr11:44081627	A	NA	19	0	18	54.722	11.313	0	0	0	18	0	ACCSL	downstream	NA
RCC_T3--2	chr11:44081627	A	C	26	0.038	25	61.520	7.394	1	38.000	0.000	25	1	ACCSL	downstream	NA
RCC_T3--3	chr11:44081627	A	NA	27	0	27	59.111	7.807	0	0	0	27	0	ACCSL	downstream	NA
RCC_T3--4	chr11:44081627	A	C	15	0.067	14	58.143	7.026	1	37.000	0.000	14	1	ACCSL	downstream	NA
RCC_T3--5	chr11:44081627	A	NA	15	0	15	59.400	7.753	0	0	0	15	0	ACCSL	downstream	NA
RCC_T3--6	chr11:44081627	A	NA	19	0	19	55.895	9.837	0	0	0	19	0	ACCSL	downstream	NA
RCC_T3--7	chr11:44081627	A	NA	28	0	27	56.407	9.520	0	0	0	27	0	ACCSL	downstream	NA
RCC_T3--8	chr11:44081627	A	C	22	0.182	18	55.611	9.236	4	41.250	10.145	18	4	ACCSL	downstream	NA
RCC_T3--GL	chr11:44081627	A	NA	35	0	35	54.743	11.421	0	0	0	35	0	ACCSL	downstream	NA
RCC_T3--1	chr1:150532264	C	NA	96	0	96	64.969	7.920	0	0	0	96	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:150532264	C	NA	86	0	86	64.616	7.154	0	0	0	86	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:150532264	C	NA	93	0	93	65.011	7.825	0	0	0	93	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:150532264	C	NA	94	0	94	64.809	8.157	0	0	0	94	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:150532264	C	A	73	0.110	65	65.031	7.060	8	66.250	3.955	65	8	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:150532264	C	NA	95	0	95	64.337	8.151	0	0	0	95	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:150532264	C	NA	93	0	93	64.688	6.705	0	0	0	93	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:150532264	C	NA	108	0	108	65.648	6.225	0	0	0	108	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:150532264	C	NA	112	0	112	62.723	7.642	0	0	0	112	0	ADAMTSL4	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:151496862	C	NA	21	0	21	65.429	6.169	0	0	0	21	0	CGN	intronic	NA
RCC_T3--2	chr1:151496862	C	A	52	0.019	51	66.392	7.861	1	68.000	0.000	51	1	CGN	intronic	NA
RCC_T3--3	chr1:151496862	C	NA	42	0	42	67.524	3.903	0	0	0	42	0	CGN	intronic	NA
RCC_T3--4	chr1:151496862	C	NA	36	0	36	68.000	3.225	0	0	0	36	0	CGN	intronic	NA
RCC_T3--5	chr1:151496862	C	A	39	0.154	33	66.727	6.341	6	67.333	4.803	33	6	CGN	intronic	NA
RCC_T3--6	chr1:151496862	C	NA	30	0	30	63.833	8.005	0	0	0	30	0	CGN	intronic	NA
RCC_T3--7	chr1:151496862	C	NA	56	0	56	65.107	8.283	0	0	0	56	0	CGN	intronic	NA
RCC_T3--8	chr1:151496862	C	A	51	0.020	50	65.080	8.253	1	33.000	0.000	50	1	CGN	intronic	NA
RCC_T3--GL	chr1:151496862	C	NA	39	0	39	65.846	5.752	0	0	0	39	0	CGN	intronic	NA
RCC_T3--1	chr1:153658249	G	A	42	0.024	40	64.850	8.148	1	48.000	0.000	40	1	NPR1	intronic	NA
RCC_T3--2	chr1:153658249	G	A	38	0.132	33	67.364	7.119	5	70.200	3.033	33	5	NPR1	intronic	NA
RCC_T3--3	chr1:153658249	G	NA	41	0	41	66.756	4.598	0	0	0	41	0	NPR1	intronic	NA
RCC_T3--4	chr1:153658249	G	NA	30	0	30	64.333	10.410	0	0	0	30	0	NPR1	intronic	NA
RCC_T3--5	chr1:153658249	G	NA	34	0	34	65.882	5.026	0	0	0	34	0	NPR1	intronic	NA
RCC_T3--6	chr1:153658249	G	NA	49	0	49	65.878	6.563	0	0	0	49	0	NPR1	intronic	NA
RCC_T3--7	chr1:153658249	G	NA	35	0	34	66.412	4.186	0	0	0	34	0	NPR1	intronic	NA
RCC_T3--8	chr1:153658249	G	NA	59	0	59	65.542	7.925	0	0	0	59	0	NPR1	intronic	NA
RCC_T3--GL	chr1:153658249	G	NA	52	0	52	65.865	7.208	0	0	0	52	0	NPR1	intronic	NA
RCC_T3--1	chr1:153906763	C	NA	30	0	30	65.867	7.060	0	0	0	30	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:153906763	C	A	27	0.148	23	65.957	7.302	4	61.250	4.425	23	4	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:153906763	C	NA	31	0	31	62.935	6.000	0	0	0	31	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:153906763	C	NA	29	0	29	67.828	4.892	0	0	0	29	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:153906763	C	NA	37	0	37	62.351	10.489	0	0	0	37	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:153906763	C	NA	32	0	32	64.188	8.161	0	0	0	32	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:153906763	C	NA	23	0	23	66.739	3.570	0	0	0	23	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:153906763	C	NA	24	0	24	65.708	4.930	0	0	0	24	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:153906763	C	NA	45	0	45	62.133	9.312	0	0	0	45	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:153907281	G	NA	42	0	29	67.621	3.774	0	0	0	29	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:153907281	G	C	42	0.024	26	64.654	7.904	1	65.000	0.000	26	1	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:153907281	G	C	55	0.055	29	65.724	6.106	3	63.667	1.528	29	3	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:153907281	G	C	51	0.157	27	66.741	5.375	8	56.000	14.323	27	8	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:153907281	G	C	38	0.132	18	66.778	2.840	5	63.000	1.581	18	5	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:153907281	G	C	43	0.047	29	67.241	3.226	2	50.500	16.263	29	2	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:153907281	G	C	62	0.032	42	66.976	4.497	2	58.500	4.950	42	2	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:153907281	G	C	65	0.062	31	65.516	6.212	4	63.750	1.893	31	4	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:153907281	G	NA	60	0	34	64.559	8.465	0	0	0	34	0	DENND4B	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:153926800	G	A	31	0.129	27	67.556	3.974	4	69.000	2.582	27	4	CRTC2	intronic	NA
RCC_T3--2	chr1:153926800	G	NA	30	0	30	65.033	9.583	0	0	0	30	0	CRTC2	intronic	NA
RCC_T3--3	chr1:153926800	G	NA	19	0	19	66.632	4.085	0	0	0	19	0	CRTC2	intronic	NA
RCC_T3--4	chr1:153926800	G	NA	29	0	29	67.517	7.209	0	0	0	29	0	CRTC2	intronic	NA
RCC_T3--5	chr1:153926800	G	NA	27	0	27	65.889	7.748	0	0	0	27	0	CRTC2	intronic	NA
RCC_T3--6	chr1:153926800	G	NA	45	0	45	66.711	6.305	0	0	0	45	0	CRTC2	intronic	NA
RCC_T3--7	chr1:153926800	G	NA	37	0	37	67.838	3.855	0	0	0	37	0	CRTC2	intronic	NA
RCC_T3--8	chr1:153926800	G	NA	24	0	24	66.958	7.975	0	0	0	24	0	CRTC2	intronic	NA
RCC_T3--GL	chr1:153926800	G	NA	49	0	49	65.939	5.414	0	0	0	49	0	CRTC2	intronic	NA
RCC_T3--1	chr1:154571180	T	A	26	0.077	24	65.792	7.940	2	64.500	0.707	24	2	ADAR	intronic	NA
RCC_T3--2	chr1:154571180	T	A	29	0.172	24	66.583	7.604	5	66.000	1.871	24	5	ADAR	intronic	NA
RCC_T3--3	chr1:154571180	T	A	32	0.062	30	67.700	6.336	2	66.500	2.121	30	2	ADAR	intronic	NA
RCC_T3--4	chr1:154571180	T	A	45	0.089	41	68.390	4.375	4	65.000	2.449	41	4	ADAR	intronic	NA
RCC_T3--5	chr1:154571180	T	A	21	0.190	17	68.353	3.239	4	62.750	1.500	17	4	ADAR	intronic	NA
RCC_T3--6	chr1:154571180	T	A	37	0.054	34	66.824	5.084	2	66.500	2.121	34	2	ADAR	intronic	NA
RCC_T3--7	chr1:154571180	T	A	36	0.111	31	68.000	3.821	4	62.750	10.500	31	4	ADAR	intronic	NA
RCC_T3--8	chr1:154571180	T	A	35	0.086	32	67.719	4.058	3	66.000	1.732	32	3	ADAR	intronic	NA
RCC_T3--GL	chr1:154571180	T	NA	34	0	34	66.912	5.621	0	0	0	34	0	ADAR	intronic	NA
RCC_T3--1	chr1:15545914	G	A	68	0.221	53	67.208	5.809	15	68.067	2.987	53	15	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:15545914	G	A	113	0.142	97	67.072	6.230	16	68.875	3.202	97	16	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:15545914	G	A	111	0.306	77	67.688	5.095	34	66.088	8.050	77	34	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:15545914	G	A	113	0.142	97	67.711	5.739	16	67.125	3.423	97	16	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:15545914	G	A	82	0.220	64	66.938	6.537	18	67.278	2.761	64	18	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:15545914	G	A	87	0.103	78	66.372	6.439	9	69.111	3.140	78	9	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:15545914	G	A	89	0.169	74	67.392	5.497	15	66.400	5.792	74	15	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:15545914	G	A	108	0.148	92	65.500	7.279	16	66.000	6.623	92	16	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:15545914	G	NA	106	0	106	65.425	8.453	0	0	0	106	0	TMEM51	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:156374209	G	NA	27	0	26	67.654	6.324	0	0	0	26	0	C1orf61	UTR3	NA
RCC_T3--2	chr1:156374209	G	NA	43	0	43	65.372	6.484	0	0	0	43	0	C1orf61	UTR3	NA
RCC_T3--3	chr1:156374209	G	NA	24	0	24	68.125	4.821	0	0	0	24	0	C1orf61	UTR3	NA
RCC_T3--4	chr1:156374209	G	NA	31	0	31	68.129	3.854	0	0	0	31	0	C1orf61	UTR3	NA
RCC_T3--5	chr1:156374209	G	NA	19	0	19	67.158	3.387	0	0	0	19	0	C1orf61	UTR3	NA
RCC_T3--6	chr1:156374209	G	NA	16	0	16	66.750	6.083	0	0	0	16	0	C1orf61	UTR3	NA
RCC_T3--7	chr1:156374209	G	T	21	0.190	17	69.353	2.317	4	62.750	1.500	17	4	C1orf61	UTR3	NA
RCC_T3--8	chr1:156374209	G	NA	31	0	31	67.258	4.546	0	0	0	31	0	C1orf61	UTR3	NA
RCC_T3--GL	chr1:156374209	G	NA	35	0	35	66.714	5.737	0	0	0	35	0	C1orf61	UTR3	NA
RCC_T3--1	chr1:156911626	G	NA	54	0	54	65.556	8.375	0	0	0	54	0	ARHGEF11	intronic	NA
RCC_T3--2	chr1:156911626	G	C	58	0.103	52	66.154	6.536	6	67.000	5.292	52	6	ARHGEF11	intronic	NA
RCC_T3--3	chr1:156911626	G	NA	61	0	60	65.283	6.992	0	0	0	60	0	ARHGEF11	intronic	NA
RCC_T3--4	chr1:156911626	G	NA	39	0	39	65.256	6.142	0	0	0	39	0	ARHGEF11	intronic	NA
RCC_T3--5	chr1:156911626	G	NA	36	0	36	66.083	4.884	0	0	0	36	0	ARHGEF11	intronic	NA
RCC_T3--6	chr1:156911626	G	NA	49	0	49	64.469	7.700	0	0	0	49	0	ARHGEF11	intronic	NA
RCC_T3--7	chr1:156911626	G	NA	66	0	66	64.212	8.200	0	0	0	66	0	ARHGEF11	intronic	NA
RCC_T3--8	chr1:156911626	G	NA	77	0	77	65.260	7.561	0	0	0	77	0	ARHGEF11	intronic	NA
RCC_T3--GL	chr1:156911626	G	NA	47	0	47	64.723	5.713	0	0	0	47	0	ARHGEF11	intronic	NA
RCC_T3--1	chr1:158151673	A	NA	42	0	42	66.667	7.669	0	0	0	42	0	CD1D	intronic	NA
RCC_T3--2	chr1:158151673	A	T	56	0.143	48	68.250	4.164	8	65.750	3.694	48	8	CD1D	intronic	NA
RCC_T3--3	chr1:158151673	A	NA	49	0	49	68.755	3.159	0	0	0	49	0	CD1D	intronic	NA
RCC_T3--4	chr1:158151673	A	NA	36	0	36	68.028	2.873	0	0	0	36	0	CD1D	intronic	NA
RCC_T3--5	chr1:158151673	A	NA	35	0	35	65.371	7.941	0	0	0	35	0	CD1D	intronic	NA
RCC_T3--6	chr1:158151673	A	NA	30	0	30	66.933	5.291	0	0	0	30	0	CD1D	intronic	NA
RCC_T3--7	chr1:158151673	A	NA	59	0	59	68.220	3.658	0	0	0	59	0	CD1D	intronic	NA
RCC_T3--8	chr1:158151673	A	NA	59	0	59	66.814	6.546	0	0	0	59	0	CD1D	intronic	NA
RCC_T3--GL	chr1:158151673	A	NA	44	0	44	66.864	5.411	0	0	0	44	0	CD1D	intronic	NA
RCC_T3--1	chr1:158639711	C	NA	41	0	41	68.366	4.565	0	0	0	41	0	SPTA1	intronic	NA
RCC_T3--2	chr1:158639711	C	NA	42	0	42	68.452	6.995	0	0	0	42	0	SPTA1	intronic	NA
RCC_T3--3	chr1:158639711	C	NA	45	0	45	68.022	5.746	0	0	0	45	0	SPTA1	intronic	NA
RCC_T3--4	chr1:158639711	C	NA	32	0	31	67.774	4.064	0	0	0	31	0	SPTA1	intronic	NA
RCC_T3--5	chr1:158639711	C	A	27	0.148	23	69.478	2.447	4	69.000	1.155	23	4	SPTA1	intronic	NA
RCC_T3--6	chr1:158639711	C	NA	46	0	46	67.652	4.715	0	0	0	46	0	SPTA1	intronic	NA
RCC_T3--7	chr1:158639711	C	NA	43	0	43	67.302	6.937	0	0	0	43	0	SPTA1	intronic	NA
RCC_T3--8	chr1:158639711	C	NA	51	0	51	68.255	4.024	0	0	0	51	0	SPTA1	intronic	NA
RCC_T3--GL	chr1:158639711	C	NA	44	0	44	68.250	4.813	0	0	0	44	0	SPTA1	intronic	NA
RCC_T3--1	chr1:158656151	A	G	35	0.057	22	69.136	3.299	2	65.000	4.243	22	2	SPTA1	intronic	NA
RCC_T3--2	chr1:158656151	A	G	25	0.160	11	68.091	3.330	4	64.000	2.000	11	4	SPTA1	intronic	NA
RCC_T3--3	chr1:158656151	A	G	50	0.100	28	68.321	3.811	5	67.200	1.789	28	5	SPTA1	intronic	NA
RCC_T3--4	chr1:158656151	A	G	35	0.029	23	68.522	3.475	1	68.000	0.000	23	1	SPTA1	intronic	NA
RCC_T3--5	chr1:158656151	A	G	31	0.065	13	68.308	3.614	2	63.000	2.828	13	2	SPTA1	intronic	NA
RCC_T3--6	chr1:158656151	A	G	52	0.038	35	67.943	4.789	2	66.500	2.121	35	2	SPTA1	intronic	NA
RCC_T3--7	chr1:158656151	A	G	36	0.056	22	68.455	2.304	2	60.500	6.364	22	2	SPTA1	intronic	NA
RCC_T3--8	chr1:158656151	A	G	36	0.028	19	69.158	3.005	1	66.000	0.000	19	1	SPTA1	intronic	NA
RCC_T3--GL	chr1:158656151	A	NA	55	0	34	68.206	3.968	0	0	0	34	0	SPTA1	intronic	NA
RCC_T3--1	chr1:158656152	G	T	35	0.057	22	70.045	2.214	2	64.500	0.707	22	2	SPTA1	intronic	NA
RCC_T3--2	chr1:158656152	G	T	26	0.192	11	68.727	2.611	5	63.000	2.000	11	5	SPTA1	intronic	NA
RCC_T3--3	chr1:158656152	G	T	49	0.163	24	69.708	2.095	8	65.000	6.118	24	8	SPTA1	intronic	NA
RCC_T3--4	chr1:158656152	G	T	37	0.081	23	69.217	3.741	3	64.667	3.512	23	3	SPTA1	intronic	NA
RCC_T3--5	chr1:158656152	G	T	30	0.100	11	68.364	4.589	3	54.333	11.590	11	3	SPTA1	intronic	NA
RCC_T3--6	chr1:158656152	G	T	52	0.058	34	67.412	5.852	3	66.000	1.000	34	3	SPTA1	intronic	NA
RCC_T3--7	chr1:158656152	G	T	37	0.108	21	68.714	2.432	4	63.500	5.066	21	4	SPTA1	intronic	NA
RCC_T3--8	chr1:158656152	G	T	36	0.056	18	69.556	2.617	2	63.000	4.243	18	2	SPTA1	intronic	NA
RCC_T3--GL	chr1:158656152	G	NA	55	0	34	67.441	6.111	0	0	0	34	0	SPTA1	intronic	NA
RCC_T3--1	chr1:16056505	C	NA	23	0	23	65.826	6.028	0	0	0	23	0	PLEKHM2	intronic	NA
RCC_T3--2	chr1:16056505	C	NA	32	0	32	66.719	4.920	0	0	0	32	0	PLEKHM2	intronic	NA
RCC_T3--3	chr1:16056505	C	NA	30	0	30	66.600	5.481	0	0	0	30	0	PLEKHM2	intronic	NA
RCC_T3--4	chr1:16056505	C	NA	28	0	28	65.286	8.645	0	0	0	28	0	PLEKHM2	intronic	NA
RCC_T3--5	chr1:16056505	C	NA	27	0	27	65.259	6.671	0	0	0	27	0	PLEKHM2	intronic	NA
RCC_T3--6	chr1:16056505	C	NA	28	0	28	64.750	5.218	0	0	0	28	0	PLEKHM2	intronic	NA
RCC_T3--7	chr1:16056505	C	T	30	0.133	26	64.615	9.843	4	68.000	0.000	26	4	PLEKHM2	intronic	NA
RCC_T3--8	chr1:16056505	C	NA	26	0	26	68.231	3.861	0	0	0	26	0	PLEKHM2	intronic	NA
RCC_T3--GL	chr1:16056505	C	NA	44	0	44	66.864	4.423	0	0	0	44	0	PLEKHM2	intronic	NA
RCC_T3--1	chr11:60777081	C	NA	29	0	29	64.897	7.218	0	0	0	29	0	CD6	exonic	synonymous_SNV
RCC_T3--2	chr11:60777081	C	T	37	0.162	31	65.968	3.790	6	63.833	2.858	31	6	CD6	exonic	synonymous_SNV
RCC_T3--3	chr11:60777081	C	NA	28	0	28	62.893	9.057	0	0	0	28	0	CD6	exonic	synonymous_SNV
RCC_T3--4	chr11:60777081	C	NA	36	0	36	65.056	7.790	0	0	0	36	0	CD6	exonic	synonymous_SNV
RCC_T3--5	chr11:60777081	C	NA	31	0	31	64.258	7.452	0	0	0	31	0	CD6	exonic	synonymous_SNV
RCC_T3--6	chr11:60777081	C	NA	31	0	31	62.839	10.583	0	0	0	31	0	CD6	exonic	synonymous_SNV
RCC_T3--7	chr11:60777081	C	NA	36	0	36	65.556	4.332	0	0	0	36	0	CD6	exonic	synonymous_SNV
RCC_T3--8	chr11:60777081	C	NA	35	0	35	65.686	4.651	0	0	0	35	0	CD6	exonic	synonymous_SNV
RCC_T3--GL	chr11:60777081	C	NA	42	0	42	62.071	9.749	0	0	0	42	0	CD6	exonic	synonymous_SNV
RCC_T3--1	chr1:161011159	C	A	35	0.114	31	66.710	6.920	4	65.000	3.916	31	4	USF1	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:161011159	C	NA	59	0	59	67.695	5.052	0	0	0	59	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:161011159	C	NA	40	0	40	66.925	4.047	0	0	0	40	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:161011159	C	NA	62	0	62	66.823	6.547	0	0	0	62	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:161011159	C	NA	32	0	32	61.469	12.102	0	0	0	32	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:161011159	C	NA	43	0	43	66.372	6.852	0	0	0	43	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:161011159	C	NA	41	0	41	65.463	7.694	0	0	0	41	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:161011159	C	NA	48	0	48	67.042	6.732	0	0	0	48	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:161011159	C	NA	44	0	44	64.455	8.437	0	0	0	44	0	USF1	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:6150740	G	NA	112	0	112	66.946	6.261	0	0	0	112	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--2	chr11:6150740	G	NA	147	0	147	67.150	5.689	0	0	0	147	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--3	chr11:6150740	G	NA	175	0	175	66.743	6.850	0	0	0	175	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--4	chr11:6150740	G	NA	133	0	133	66.015	8.063	0	0	0	133	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--5	chr11:6150740	G	NA	125	0	124	66.879	6.211	0	0	0	124	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--6	chr11:6150740	G	NA	122	0	121	65.438	8.267	0	0	0	121	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--7	chr11:6150740	G	A	152	0.250	114	66.307	6.751	38	65.500	6.685	114	38	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--8	chr11:6150740	G	NA	140	0	139	65.763	7.627	0	0	0	139	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--GL	chr11:6150740	G	NA	138	0	137	66.460	6.349	0	0	0	137	0	OR56B4(dist=20772),OR52B2(dist=39845)	intergenic	NA
RCC_T3--1	chr11:61957870	C	NA	40	0	39	66.872	6.630	0	0	0	39	0	SCGB1D1	intronic	NA
RCC_T3--2	chr11:61957870	C	NA	49	0	49	68.020	6.169	0	0	0	49	0	SCGB1D1	intronic	NA
RCC_T3--3	chr11:61957870	C	T	44	0.136	38	66.132	7.297	6	69.333	3.445	38	6	SCGB1D1	intronic	NA
RCC_T3--4	chr11:61957870	C	NA	54	0	54	65.611	7.505	0	0	0	54	0	SCGB1D1	intronic	NA
RCC_T3--5	chr11:61957870	C	NA	43	0	43	67.442	3.744	0	0	0	43	0	SCGB1D1	intronic	NA
RCC_T3--6	chr11:61957870	C	NA	41	0	41	66.683	3.952	0	0	0	41	0	SCGB1D1	intronic	NA
RCC_T3--7	chr11:61957870	C	NA	52	0	52	67.212	4.249	0	0	0	52	0	SCGB1D1	intronic	NA
RCC_T3--8	chr11:61957870	C	T	45	0.022	44	68.841	2.820	1	72.000	0.000	44	1	SCGB1D1	intronic	NA
RCC_T3--GL	chr11:61957870	C	NA	48	0	48	66.792	7.366	0	0	0	48	0	SCGB1D1	intronic	NA
RCC_T3--1	chr11:62189964	T	NA	11	0	11	69.455	3.984	0	0	0	11	0	SCGB1A1	intronic	NA
RCC_T3--2	chr11:62189964	T	A	16	0.188	13	66.769	4.531	3	62.667	2.082	13	3	SCGB1A1	intronic	NA
RCC_T3--3	chr11:62189964	T	NA	28	0	28	67.393	3.985	0	0	0	28	0	SCGB1A1	intronic	NA
RCC_T3--4	chr11:62189964	T	NA	21	0	21	67.000	8.521	0	0	0	21	0	SCGB1A1	intronic	NA
RCC_T3--5	chr11:62189964	T	NA	24	0	24	66.542	7.307	0	0	0	24	0	SCGB1A1	intronic	NA
RCC_T3--6	chr11:62189964	T	NA	17	0	17	68.471	3.184	0	0	0	17	0	SCGB1A1	intronic	NA
RCC_T3--7	chr11:62189964	T	NA	24	0	24	67.625	5.523	0	0	0	24	0	SCGB1A1	intronic	NA
RCC_T3--8	chr11:62189964	T	NA	30	0	30	66.600	7.722	0	0	0	30	0	SCGB1A1	intronic	NA
RCC_T3--GL	chr11:62189964	T	NA	36	0	36	68.389	3.017	0	0	0	36	0	SCGB1A1	intronic	NA
RCC_T3--1	chr11:62373685	C	NA	24	0	24	67.458	4.818	0	0	0	24	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:62373685	C	NA	36	0	36	67.000	5.372	0	0	0	36	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:62373685	C	NA	30	0	30	67.300	4.308	0	0	0	30	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:62373685	C	NA	27	0	27	67.148	3.450	0	0	0	27	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:62373685	C	NA	34	0	34	65.412	7.805	0	0	0	34	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:62373685	C	NA	43	0	43	65.907	7.640	0	0	0	43	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:62373685	C	A	32	0.188	26	68.385	5.076	6	65.500	1.378	26	6	EML3	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:62373685	C	NA	38	0	38	67.553	4.176	0	0	0	38	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:62373685	C	NA	35	0	35	64.543	8.078	0	0	0	35	0	EML3	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:64071420	G	NA	40	0	40	64.775	7.694	0	0	0	40	0	TEX40	intronic	NA
RCC_T3--2	chr11:64071420	G	NA	70	0	70	63.214	9.713	0	0	0	70	0	TEX40	intronic	NA
RCC_T3--3	chr11:64071420	G	NA	52	0	52	64.846	7.550	0	0	0	52	0	TEX40	intronic	NA
RCC_T3--4	chr11:64071420	G	A	55	0.109	49	67.122	4.927	6	61.500	6.686	49	6	TEX40	intronic	NA
RCC_T3--5	chr11:64071420	G	NA	31	0	31	64.387	7.965	0	0	0	31	0	TEX40	intronic	NA
RCC_T3--6	chr11:64071420	G	NA	61	0	60	62.450	10.476	0	0	0	60	0	TEX40	intronic	NA
RCC_T3--7	chr11:64071420	G	NA	57	0	57	66.667	6.385	0	0	0	57	0	TEX40	intronic	NA
RCC_T3--8	chr11:64071420	G	NA	63	0	63	64.127	8.017	0	0	0	63	0	TEX40	intronic	NA
RCC_T3--GL	chr11:64071420	G	NA	67	0	66	63.576	7.323	0	0	0	66	0	TEX40	intronic	NA
RCC_T3--1	chr11:64504489	C	NA	19	0	19	66.474	4.087	0	0	0	19	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--2	chr11:64504489	C	NA	41	0	41	67.195	6.458	0	0	0	41	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--3	chr11:64504489	C	NA	25	0	25	66.960	6.017	0	0	0	25	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--4	chr11:64504489	C	NA	36	0	36	66.167	5.085	0	0	0	36	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--5	chr11:64504489	C	NA	25	0	25	65.640	5.476	0	0	0	25	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--6	chr11:64504489	C	NA	37	0	37	66.459	4.753	0	0	0	37	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--7	chr11:64504489	C	NA	41	0	41	66.439	4.566	0	0	0	41	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--8	chr11:64504489	C	T	26	0.154	22	66.273	4.600	4	58.250	7.932	22	4	RASGRP2	exonic	synonymous_SNV
RCC_T3--GL	chr11:64504489	C	NA	36	0	36	63.667	9.850	0	0	0	36	0	RASGRP2	exonic	synonymous_SNV
RCC_T3--1	chr11:65393389	C	NA	43	0	43	66.744	3.678	0	0	0	43	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:65393389	C	NA	34	0	34	66.853	5.919	0	0	0	34	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:65393389	C	NA	26	0	26	64.885	8.096	0	0	0	26	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:65393389	C	NA	28	0	28	65.821	7.364	0	0	0	28	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:65393389	C	NA	29	0	29	63.931	9.479	0	0	0	29	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:65393389	C	NA	42	0	42	62.500	8.440	0	0	0	42	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:65393389	C	NA	33	0	33	65.485	5.044	0	0	0	33	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:65393389	C	A	37	0.108	33	65.545	7.538	4	67.250	3.862	33	4	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:65393389	C	NA	41	0	41	66.366	4.515	0	0	0	41	0	PCNXL3	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:65652275	G	NA	19	0	19	65.579	6.736	0	0	0	19	0	FIBP	intronic	NA
RCC_T3--2	chr11:65652275	G	A	18	0.167	15	68.667	3.063	3	63.000	1.732	15	3	FIBP	intronic	NA
RCC_T3--3	chr11:65652275	G	NA	18	0	18	68.167	3.650	0	0	0	18	0	FIBP	intronic	NA
RCC_T3--4	chr11:65652275	G	NA	26	0	26	67.962	4.152	0	0	0	26	0	FIBP	intronic	NA
RCC_T3--5	chr11:65652275	G	NA	12	0	12	68.750	3.494	0	0	0	12	0	FIBP	intronic	NA
RCC_T3--6	chr11:65652275	G	NA	21	0	21	67.333	3.733	0	0	0	21	0	FIBP	intronic	NA
RCC_T3--7	chr11:65652275	G	NA	15	0	15	69.133	3.314	0	0	0	15	0	FIBP	intronic	NA
RCC_T3--8	chr11:65652275	G	NA	16	0	16	67.750	4.344	0	0	0	16	0	FIBP	intronic	NA
RCC_T3--GL	chr11:65652275	G	NA	34	0	34	64.647	9.835	0	0	0	34	0	FIBP	intronic	NA
RCC_T3--1	chr11:65822703	G	NA	30	0	30	67.800	3.764	0	0	0	30	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:65822703	G	NA	34	0	34	68.882	4.409	0	0	0	34	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:65822703	G	NA	39	0	39	66.077	6.499	0	0	0	39	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:65822703	G	NA	34	0	34	66.824	4.441	0	0	0	34	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:65822703	G	A	34	0.118	30	65.867	7.533	4	63.500	3.697	30	4	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:65822703	G	NA	26	0	26	67.154	4.953	0	0	0	26	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:65822703	G	NA	34	0	34	66.853	4.439	0	0	0	34	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:65822703	G	NA	25	0	25	65.960	5.311	0	0	0	25	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:65822703	G	NA	34	0	34	67.500	4.737	0	0	0	34	0	SF3B2	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:66052735	T	NA	27	0	27	68.667	3.088	0	0	0	27	0	YIF1A	intronic	NA
RCC_T3--2	chr11:66052735	T	NA	32	0	32	68.406	3.004	0	0	0	32	0	YIF1A	intronic	NA
RCC_T3--3	chr11:66052735	T	NA	32	0	32	67.531	7.746	0	0	0	32	0	YIF1A	intronic	NA
RCC_T3--4	chr11:66052735	T	NA	42	0	42	67.952	3.987	0	0	0	42	0	YIF1A	intronic	NA
RCC_T3--5	chr11:66052735	T	NA	37	0	37	68.135	3.910	0	0	0	37	0	YIF1A	intronic	NA
RCC_T3--6	chr11:66052735	T	A	27	0.148	23	66.783	7.810	4	68.250	3.202	23	4	YIF1A	intronic	NA
RCC_T3--7	chr11:66052735	T	NA	38	0	38	66.579	6.821	0	0	0	38	0	YIF1A	intronic	NA
RCC_T3--8	chr11:66052735	T	NA	40	0	40	66.675	7.091	0	0	0	40	0	YIF1A	intronic	NA
RCC_T3--GL	chr11:66052735	T	NA	46	0	46	67.457	3.692	0	0	0	46	0	YIF1A	intronic	NA
RCC_T3--1	chr1:16717971	G	NA	33	0	33	66.182	6.267	0	0	0	33	0	SZRD1	intronic	NA
RCC_T3--2	chr1:16717971	G	NA	54	0	54	67.519	5.164	0	0	0	54	0	SZRD1	intronic	NA
RCC_T3--3	chr1:16717971	G	NA	32	0	32	66.281	5.238	0	0	0	32	0	SZRD1	intronic	NA
RCC_T3--4	chr1:16717971	G	A	42	0.024	41	66.171	9.014	1	33.000	0.000	41	1	SZRD1	intronic	NA
RCC_T3--5	chr1:16717971	G	A	33	0.121	29	67.069	3.981	4	59.000	13.140	29	4	SZRD1	intronic	NA
RCC_T3--6	chr1:16717971	G	NA	39	0	39	67.205	5.115	0	0	0	39	0	SZRD1	intronic	NA
RCC_T3--7	chr1:16717971	G	NA	48	0	48	67.104	7.014	0	0	0	48	0	SZRD1	intronic	NA
RCC_T3--8	chr1:16717971	G	NA	39	0	39	66.359	8.524	0	0	0	39	0	SZRD1	intronic	NA
RCC_T3--GL	chr1:16717971	G	NA	39	0	39	66.256	8.220	0	0	0	39	0	SZRD1	intronic	NA
RCC_T3--1	chr11:67434229	C	NA	17	0	17	66.647	4.372	0	0	0	17	0	ALDH3B2	intronic	NA
RCC_T3--2	chr11:67434229	C	NA	28	0	28	67.357	7.847	0	0	0	28	0	ALDH3B2	intronic	NA
RCC_T3--3	chr11:67434229	C	NA	21	0	21	67.905	3.300	0	0	0	21	0	ALDH3B2	intronic	NA
RCC_T3--4	chr11:67434229	C	A	26	0.154	22	66.818	4.646	4	67.750	3.304	22	4	ALDH3B2	intronic	NA
RCC_T3--5	chr11:67434229	C	NA	35	0	35	67.371	4.557	0	0	0	35	0	ALDH3B2	intronic	NA
RCC_T3--6	chr11:67434229	C	NA	28	0	28	64.250	7.638	0	0	0	28	0	ALDH3B2	intronic	NA
RCC_T3--7	chr11:67434229	C	NA	31	0	31	68.516	3.108	0	0	0	31	0	ALDH3B2	intronic	NA
RCC_T3--8	chr11:67434229	C	NA	28	0	28	62.964	11.338	0	0	0	28	0	ALDH3B2	intronic	NA
RCC_T3--GL	chr11:67434229	C	NA	41	0	41	65.415	5.779	0	0	0	41	0	ALDH3B2	intronic	NA
RCC_T3--1	chr1:169080542	G	C	61	0.262	45	66.800	4.989	16	65.938	4.697	45	16	ATP1B1	intronic	NA
RCC_T3--2	chr1:169080542	G	C	102	0.206	81	67.173	4.387	21	66.714	3.538	81	21	ATP1B1	intronic	NA
RCC_T3--3	chr1:169080542	G	C	94	0.191	76	66.382	6.132	18	68.167	3.111	76	18	ATP1B1	intronic	NA
RCC_T3--4	chr1:169080542	G	C	70	0.129	61	67.000	3.912	9	64.667	6.633	61	9	ATP1B1	intronic	NA
RCC_T3--5	chr1:169080542	G	C	120	0.100	108	66.306	4.633	12	63.250	11.764	108	12	ATP1B1	intronic	NA
RCC_T3--6	chr1:169080542	G	C	102	0.118	90	65.778	6.168	12	65.083	4.757	90	12	ATP1B1	intronic	NA
RCC_T3--7	chr1:169080542	G	C	88	0.261	65	65.154	7.624	23	65.870	8.165	65	23	ATP1B1	intronic	NA
RCC_T3--8	chr1:169080542	G	C	92	0.217	72	65.958	6.655	20	65.900	4.291	72	20	ATP1B1	intronic	NA
RCC_T3--GL	chr1:169080542	G	NA	89	0	89	65.427	6.747	0	0	0	89	0	ATP1B1	intronic	NA
RCC_T3--1	chr1:171556665	G	T	37	0.108	33	68.182	4.035	4	68.500	2.082	33	4	PRRC2C	intronic	NA
RCC_T3--2	chr1:171556665	G	NA	40	0	40	69.950	3.449	0	0	0	40	0	PRRC2C	intronic	NA
RCC_T3--3	chr1:171556665	G	NA	53	0	53	69.038	3.546	0	0	0	53	0	PRRC2C	intronic	NA
RCC_T3--4	chr1:171556665	G	NA	62	0	62	67.726	5.363	0	0	0	62	0	PRRC2C	intronic	NA
RCC_T3--5	chr1:171556665	G	NA	35	0	35	68.229	4.753	0	0	0	35	0	PRRC2C	intronic	NA
RCC_T3--6	chr1:171556665	G	NA	38	0	38	68.184	3.424	0	0	0	38	0	PRRC2C	intronic	NA
RCC_T3--7	chr1:171556665	G	NA	41	0	41	68.780	4.022	0	0	0	41	0	PRRC2C	intronic	NA
RCC_T3--8	chr1:171556665	G	NA	43	0	43	69.326	3.160	0	0	0	43	0	PRRC2C	intronic	NA
RCC_T3--GL	chr1:171556665	G	NA	47	0	47	68.319	3.868	0	0	0	47	0	PRRC2C	intronic	NA
RCC_T3--1	chr11:71940125	T	NA	48	0	48	64.000	8.040	0	0	0	48	0	INPPL1	intronic	NA
RCC_T3--2	chr11:71940125	T	NA	70	0	70	65.929	5.604	0	0	0	70	0	INPPL1	intronic	NA
RCC_T3--3	chr11:71940125	T	NA	73	0	73	64.123	7.282	0	0	0	73	0	INPPL1	intronic	NA
RCC_T3--4	chr11:71940125	T	NA	60	0	60	65.817	7.130	0	0	0	60	0	INPPL1	intronic	NA
RCC_T3--5	chr11:71940125	T	NA	70	0	70	63.014	8.450	0	0	0	70	0	INPPL1	intronic	NA
RCC_T3--6	chr11:71940125	T	NA	82	0	82	64.427	6.935	0	0	0	82	0	INPPL1	intronic	NA
RCC_T3--7	chr11:71940125	T	NA	58	0	58	65.414	4.974	0	0	0	58	0	INPPL1	intronic	NA
RCC_T3--8	chr11:71940125	T	C	56	0.107	50	66.380	7.022	6	61.667	6.861	50	6	INPPL1	intronic	NA
RCC_T3--GL	chr11:71940125	T	NA	64	0	64	62.609	8.664	0	0	0	64	0	INPPL1	intronic	NA
RCC_T3--1	chr11:72407563	C	NA	21	0	21	66.857	4.983	0	0	0	21	0	ARAP1	intronic	NA
RCC_T3--2	chr11:72407563	C	NA	22	0	22	65.682	7.240	0	0	0	22	0	ARAP1	intronic	NA
RCC_T3--3	chr11:72407563	C	NA	23	0	23	64.870	8.047	0	0	0	23	0	ARAP1	intronic	NA
RCC_T3--4	chr11:72407563	C	A	25	0.160	21	64.952	9.872	4	65.250	1.500	21	4	ARAP1	intronic	NA
RCC_T3--5	chr11:72407563	C	NA	36	0	36	65.361	5.782	0	0	0	36	0	ARAP1	intronic	NA
RCC_T3--6	chr11:72407563	C	NA	34	0	34	64.853	8.061	0	0	0	34	0	ARAP1	intronic	NA
RCC_T3--7	chr11:72407563	C	NA	37	0	37	66.622	3.847	0	0	0	37	0	ARAP1	intronic	NA
RCC_T3--8	chr11:72407563	C	NA	26	0	26	65.462	4.827	0	0	0	26	0	ARAP1	intronic	NA
RCC_T3--GL	chr11:72407563	C	NA	39	0	39	65.872	7.533	0	0	0	39	0	ARAP1	intronic	NA
RCC_T3--1	chr1:173833837	T	NA	25	0	25	69.240	3.961	0	0	0	25	0	GAS5	ncRNA_exonic	NA
RCC_T3--2	chr1:173833837	T	NA	32	0	32	70.062	2.614	0	0	0	32	0	GAS5	ncRNA_exonic	NA
RCC_T3--3	chr1:173833837	T	NA	24	0	24	69.417	3.599	0	0	0	24	0	GAS5	ncRNA_exonic	NA
RCC_T3--4	chr1:173833837	T	NA	34	0	34	69.647	2.639	0	0	0	34	0	GAS5	ncRNA_exonic	NA
RCC_T3--5	chr1:173833837	T	NA	21	0	21	68.810	4.214	0	0	0	21	0	GAS5	ncRNA_exonic	NA
RCC_T3--6	chr1:173833837	T	NA	28	0	28	68.786	3.457	0	0	0	28	0	GAS5	ncRNA_exonic	NA
RCC_T3--7	chr1:173833837	T	C	17	0.176	14	68.286	2.730	3	66.667	3.215	14	3	GAS5	ncRNA_exonic	NA
RCC_T3--8	chr1:173833837	T	NA	42	0	42	69.667	3.511	0	0	0	42	0	GAS5	ncRNA_exonic	NA
RCC_T3--GL	chr1:173833837	T	NA	41	0	41	69.415	2.683	0	0	0	41	0	GAS5	ncRNA_exonic	NA
RCC_T3--1	chr11:75508233	A	T	91	0.242	68	66.059	5.550	22	65.364	4.885	68	22	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:75508233	A	T	117	0.171	97	65.639	6.889	20	65.300	5.449	97	20	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:75508233	A	T	135	0.185	109	64.394	7.623	25	64.320	9.022	109	25	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:75508233	A	T	131	0.191	105	66.495	4.917	25	64.600	9.430	105	25	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:75508233	A	T	108	0.037	103	64.010	7.216	4	67.000	2.449	103	4	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:75508233	A	T	110	0.091	100	65.230	6.460	10	60.800	10.174	100	10	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:75508233	A	T	126	0.135	109	65.349	6.501	17	67.059	4.892	109	17	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:75508233	A	T	141	0.142	121	64.785	6.045	20	66.150	5.932	121	20	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:75508233	A	NA	138	0	138	63.949	7.510	0	0	0	138	0	DGAT2	exonic	nonsynonymous_SNV
RCC_T3--1	chr11:76260930	A	T	35	0.029	34	55.853	13.996	1	33.000	0.000	34	1	C11orf30	intronic	NA
RCC_T3--2	chr11:76260930	A	T	58	0.069	54	58.204	12.718	4	38.250	0.500	54	4	C11orf30	intronic	NA
RCC_T3--3	chr11:76260930	A	NA	55	0	54	55.630	13.217	0	0	0	54	0	C11orf30	intronic	NA
RCC_T3--4	chr11:76260930	A	T	48	0.062	45	57.044	13.101	3	38.333	5.508	45	3	C11orf30	intronic	NA
RCC_T3--5	chr11:76260930	A	T	47	0.234	36	54.722	13.181	11	37.636	2.580	36	11	C11orf30	intronic	NA
RCC_T3--6	chr11:76260930	A	T	46	0.065	43	54.907	14.547	3	36.667	3.215	43	3	C11orf30	intronic	NA
RCC_T3--7	chr11:76260930	A	T	44	0.045	42	58.810	11.538	2	45.000	8.485	42	2	C11orf30	intronic	NA
RCC_T3--8	chr11:76260930	A	T	49	0.061	46	55.283	12.583	3	38.333	0.577	46	3	C11orf30	intronic	NA
RCC_T3--GL	chr11:76260930	A	NA	40	0	40	55.050	14.222	0	0	0	40	0	C11orf30	intronic	NA
RCC_T3--1	chr11:77911672	C	A	17	0.059	16	59.938	11.000	1	65.000	0.000	16	1	USP35	intronic	NA
RCC_T3--2	chr11:77911672	C	A	28	0.143	24	64.375	4.528	4	58.000	13.392	24	4	USP35	intronic	NA
RCC_T3--3	chr11:77911672	C	NA	37	0	37	66.108	3.907	0	0	0	37	0	USP35	intronic	NA
RCC_T3--4	chr11:77911672	C	NA	17	0	17	61.412	11.336	0	0	0	17	0	USP35	intronic	NA
RCC_T3--5	chr11:77911672	C	NA	23	0	23	65.913	2.843	0	0	0	23	0	USP35	intronic	NA
RCC_T3--6	chr11:77911672	C	NA	33	0	33	64.152	8.555	0	0	0	33	0	USP35	intronic	NA
RCC_T3--7	chr11:77911672	C	NA	42	0	41	63.488	6.581	0	0	0	41	0	USP35	intronic	NA
RCC_T3--8	chr11:77911672	C	NA	37	0	37	65.378	4.172	0	0	0	37	0	USP35	intronic	NA
RCC_T3--GL	chr11:77911672	C	NA	34	0	34	65.235	4.500	0	0	0	34	0	USP35	intronic	NA
RCC_T3--1	chr1:178514583	A	NA	32	0	32	68.062	4.457	0	0	0	32	0	C1orf220	ncRNA_exonic	NA
RCC_T3--2	chr1:178514583	A	NA	46	0	46	68.587	3.270	0	0	0	46	0	C1orf220	ncRNA_exonic	NA
RCC_T3--3	chr1:178514583	A	G	36	0.111	32	68.594	3.537	4	67.250	2.217	32	4	C1orf220	ncRNA_exonic	NA
RCC_T3--4	chr1:178514583	A	NA	32	0	32	67.062	6.216	0	0	0	32	0	C1orf220	ncRNA_exonic	NA
RCC_T3--5	chr1:178514583	A	NA	32	0	32	67.344	4.763	0	0	0	32	0	C1orf220	ncRNA_exonic	NA
RCC_T3--6	chr1:178514583	A	NA	28	0	28	66.857	4.625	0	0	0	28	0	C1orf220	ncRNA_exonic	NA
RCC_T3--7	chr1:178514583	A	NA	34	0	34	66.000	7.679	0	0	0	34	0	C1orf220	ncRNA_exonic	NA
RCC_T3--8	chr1:178514583	A	NA	35	0	35	68.657	3.271	0	0	0	35	0	C1orf220	ncRNA_exonic	NA
RCC_T3--GL	chr1:178514583	A	NA	34	0	34	67.588	5.478	0	0	0	34	0	C1orf220	ncRNA_exonic	NA
RCC_T3--1	chr1:179961092	C	NA	17	0	17	68.588	4.487	0	0	0	17	0	CEP350	intronic	NA
RCC_T3--2	chr1:179961092	C	NA	14	0	14	70.357	1.946	0	0	0	14	0	CEP350	intronic	NA
RCC_T3--3	chr1:179961092	C	NA	20	0	20	68.800	3.874	0	0	0	20	0	CEP350	intronic	NA
RCC_T3--4	chr1:179961092	C	NA	17	0	17	68.235	7.637	0	0	0	17	0	CEP350	intronic	NA
RCC_T3--5	chr1:179961092	C	NA	13	0	13	70.231	2.833	0	0	0	13	0	CEP350	intronic	NA
RCC_T3--6	chr1:179961092	C	NA	20	0	20	69.150	4.146	0	0	0	20	0	CEP350	intronic	NA
RCC_T3--7	chr1:179961092	C	T	20	0.150	17	69.118	2.848	3	64.667	0.577	17	3	CEP350	intronic	NA
RCC_T3--8	chr1:179961092	C	NA	24	0	24	67.667	4.146	0	0	0	24	0	CEP350	intronic	NA
RCC_T3--GL	chr1:179961092	C	NA	36	0	36	68.972	3.722	0	0	0	36	0	CEP350	intronic	NA
RCC_T3--1	chr11:812536	T	NA	34	0	34	63.853	6.951	0	0	0	34	0	RPLP2	exonic	synonymous_SNV
RCC_T3--2	chr11:812536	T	NA	43	0	43	63.558	8.697	0	0	0	43	0	RPLP2	exonic	synonymous_SNV
RCC_T3--3	chr11:812536	T	NA	47	0	47	63.000	6.689	0	0	0	47	0	RPLP2	exonic	synonymous_SNV
RCC_T3--4	chr11:812536	T	NA	34	0	34	62.941	7.969	0	0	0	34	0	RPLP2	exonic	synonymous_SNV
RCC_T3--5	chr11:812536	T	A	48	0.021	46	60.761	9.151	1	41.000	0.000	46	1	RPLP2	exonic	synonymous_SNV
RCC_T3--6	chr11:812536	T	A	32	0.125	28	65.250	3.718	4	64.750	6.185	28	4	RPLP2	exonic	synonymous_SNV
RCC_T3--7	chr11:812536	T	NA	40	0	39	64.872	6.396	0	0	0	39	0	RPLP2	exonic	synonymous_SNV
RCC_T3--8	chr11:812536	T	NA	32	0	32	61.750	10.510	0	0	0	32	0	RPLP2	exonic	synonymous_SNV
RCC_T3--GL	chr11:812536	T	NA	53	0	53	63.170	8.916	0	0	0	53	0	RPLP2	exonic	synonymous_SNV
RCC_T3--1	chr11:82708241	C	NA	40	0	40	67.825	4.075	0	0	0	40	0	RAB30	intronic	NA
RCC_T3--2	chr11:82708241	C	NA	38	0	38	66.553	6.579	0	0	0	38	0	RAB30	intronic	NA
RCC_T3--3	chr11:82708241	C	NA	50	0	50	65.920	7.342	0	0	0	50	0	RAB30	intronic	NA
RCC_T3--4	chr11:82708241	C	NA	15	0	15	66.733	5.106	0	0	0	15	0	RAB30	intronic	NA
RCC_T3--5	chr11:82708241	C	T	25	0.160	21	66.476	7.054	4	71.750	0.500	21	4	RAB30	intronic	NA
RCC_T3--6	chr11:82708241	C	NA	27	0	27	65.593	9.633	0	0	0	27	0	RAB30	intronic	NA
RCC_T3--7	chr11:82708241	C	NA	29	0	29	68.966	2.652	0	0	0	29	0	RAB30	intronic	NA
RCC_T3--8	chr11:82708241	C	NA	41	0	41	67.732	3.708	0	0	0	41	0	RAB30	intronic	NA
RCC_T3--GL	chr11:82708241	C	NA	38	0	38	64.974	7.347	0	0	0	38	0	RAB30	intronic	NA
RCC_T3--1	chr1:183091353	G	T	116	0.172	95	66.463	6.477	20	66.400	5.355	95	20	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:183091353	G	T	116	0.147	99	66.879	7.194	17	64.353	8.108	99	17	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:183091353	G	T	193	0.228	148	65.297	9.539	44	65.364	5.212	148	44	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:183091353	G	T	115	0.243	87	66.517	7.141	28	65.750	6.725	87	28	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:183091353	G	T	118	0.068	110	66.018	6.796	8	62.000	12.873	110	8	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:183091353	G	T	144	0.118	127	65.882	6.484	17	65.765	7.766	127	17	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:183091353	G	T	134	0.194	108	67.046	5.913	26	61.077	9.562	108	26	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:183091353	G	T	133	0.226	103	65.388	8.308	30	64.167	8.575	103	30	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:183091353	G	NA	151	0	151	65.166	8.988	0	0	0	151	0	LAMC1	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:19181531	C	NA	10	0	10	64.200	11.043	0	0	0	10	0	TAS1R2	intronic	NA
RCC_T3--2	chr1:19181531	C	NA	23	0	23	66.391	4.480	0	0	0	23	0	TAS1R2	intronic	NA
RCC_T3--3	chr1:19181531	C	NA	32	0	32	65.906	7.502	0	0	0	32	0	TAS1R2	intronic	NA
RCC_T3--4	chr1:19181531	C	G	29	0.138	25	66.640	7.916	4	61.500	7.047	25	4	TAS1R2	intronic	NA
RCC_T3--5	chr1:19181531	C	NA	30	0	30	66.633	5.295	0	0	0	30	0	TAS1R2	intronic	NA
RCC_T3--6	chr1:19181531	C	NA	27	0	27	62.481	9.831	0	0	0	27	0	TAS1R2	intronic	NA
RCC_T3--7	chr1:19181531	C	G	27	0.037	25	66.160	5.914	1	66.000	0.000	25	1	TAS1R2	intronic	NA
RCC_T3--8	chr1:19181531	C	NA	22	0	22	67.909	4.196	0	0	0	22	0	TAS1R2	intronic	NA
RCC_T3--GL	chr1:19181531	C	NA	36	0	36	64.194	8.763	0	0	0	36	0	TAS1R2	intronic	NA
RCC_T3--1	chr1:19596867	G	NA	17	0	17	62.235	12.204	0	0	0	17	0	AKR7L	ncRNA_intronic	NA
RCC_T3--2	chr1:19596867	G	A	22	0.182	18	65.444	12.162	4	64.750	7.805	18	4	AKR7L	ncRNA_intronic	NA
RCC_T3--3	chr1:19596867	G	NA	32	0	32	63.469	10.845	0	0	0	32	0	AKR7L	ncRNA_intronic	NA
RCC_T3--4	chr1:19596867	G	NA	24	0	24	68.792	3.257	0	0	0	24	0	AKR7L	ncRNA_intronic	NA
RCC_T3--5	chr1:19596867	G	NA	28	0	28	65.786	7.941	0	0	0	28	0	AKR7L	ncRNA_intronic	NA
RCC_T3--6	chr1:19596867	G	NA	20	0	20	64.700	9.443	0	0	0	20	0	AKR7L	ncRNA_intronic	NA
RCC_T3--7	chr1:19596867	G	NA	23	0	23	67.652	4.130	0	0	0	23	0	AKR7L	ncRNA_intronic	NA
RCC_T3--8	chr1:19596867	G	NA	22	0	22	67.409	5.297	0	0	0	22	0	AKR7L	ncRNA_intronic	NA
RCC_T3--GL	chr1:19596867	G	NA	36	0	36	64.583	10.369	0	0	0	36	0	AKR7L	ncRNA_intronic	NA
RCC_T3--1	chr11:97158101	C	A	70	0.014	68	68.574	5.423	1	33.000	0.000	68	1	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--2	chr11:97158101	C	A	76	0.013	75	67.960	4.513	1	64.000	0.000	75	1	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--3	chr11:97158101	C	NA	74	0	74	68.432	5.320	0	0	0	74	0	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--4	chr11:97158101	C	NA	86	0	86	68.070	4.023	0	0	0	86	0	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--5	chr11:97158101	C	A	78	0.051	74	67.500	4.714	4	65.250	6.185	74	4	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--6	chr11:97158101	C	A	76	0.118	67	67.194	4.881	9	68.000	3.536	67	9	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--7	chr11:97158101	C	NA	85	0	85	68.012	5.927	0	0	0	85	0	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--8	chr11:97158101	C	A	92	0.098	83	68.554	3.908	9	68.333	3.742	83	9	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--GL	chr11:97158101	C	NA	97	0	97	67.237	5.731	0	0	0	97	0	JRKL-AS1(dist=918060),MIR7976(dist=332775)	intergenic	NA
RCC_T3--1	chr11:994219	C	NA	51	0	51	64.843	6.376	0	0	0	51	0	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--2	chr11:994219	C	A	50	0.080	46	62.239	10.117	4	51.250	10.935	46	4	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--3	chr11:994219	C	NA	56	0	56	62.571	10.027	0	0	0	56	0	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--4	chr11:994219	C	NA	63	0	62	63.823	4.675	0	0	0	62	0	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--5	chr11:994219	C	A	56	0.036	54	61.148	13.331	2	48.500	6.364	54	2	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--6	chr11:994219	C	A	46	0.196	37	64.135	8.183	9	49.222	13.452	37	9	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--7	chr11:994219	C	NA	57	0	57	60.614	11.738	0	0	0	57	0	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--8	chr11:994219	C	A	49	0.102	44	60.682	12.751	5	66.600	2.191	44	5	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr11:994219	C	NA	40	0	40	62.950	9.364	0	0	0	40	0	AP2A2	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:200959237	C	NA	51	0	51	63.216	11.282	0	0	0	51	0	KIF21B	intronic	NA
RCC_T3--2	chr1:200959237	C	NA	54	0	54	67.037	6.097	0	0	0	54	0	KIF21B	intronic	NA
RCC_T3--3	chr1:200959237	C	T	46	0.304	32	64.875	4.982	14	63.786	10.267	32	14	KIF21B	intronic	NA
RCC_T3--4	chr1:200959237	C	NA	44	0	44	66.273	4.805	0	0	0	44	0	KIF21B	intronic	NA
RCC_T3--5	chr1:200959237	C	NA	41	0	41	65.854	8.284	0	0	0	41	0	KIF21B	intronic	NA
RCC_T3--6	chr1:200959237	C	NA	60	0	60	66.650	4.214	0	0	0	60	0	KIF21B	intronic	NA
RCC_T3--7	chr1:200959237	C	NA	58	0	58	63.897	10.285	0	0	0	58	0	KIF21B	intronic	NA
RCC_T3--8	chr1:200959237	C	T	53	0.019	52	65.231	6.413	1	72.000	0.000	52	1	KIF21B	intronic	NA
RCC_T3--GL	chr1:200959237	C	NA	46	0	46	63.457	9.535	0	0	0	46	0	KIF21B	intronic	NA
RCC_T3--1	chr1:201356187	A	NA	27	0	27	60.296	10.454	0	0	0	27	0	LAD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:201356187	A	NA	33	0	33	59.485	10.872	0	0	0	33	0	LAD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:201356187	A	C	30	0.067	27	59.481	11.413	2	44.000	15.556	27	2	LAD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:201356187	A	C	35	0.057	32	58.688	12.087	2	34.500	2.121	32	2	LAD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:201356187	A	C	35	0.171	29	59.621	12.084	6	36.333	3.670	29	6	LAD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:201356187	A	C	24	0.083	22	63.000	11.212	2	36.000	0.000	22	2	LAD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:201356187	A	C	37	0.135	31	64.355	6.912	5	39.000	11.811	31	5	LAD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:201356187	A	C	36	0.083	32	55.500	12.839	3	34.333	2.309	32	3	LAD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:201356187	A	NA	33	0	33	60.000	9.666	0	0	0	33	0	LAD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:201947640	C	NA	39	0	39	66.051	4.058	0	0	0	39	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--2	chr1:201947640	C	NA	64	0	64	65.234	6.893	0	0	0	64	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--3	chr1:201947640	C	NA	67	0	67	65.433	6.618	0	0	0	67	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--4	chr1:201947640	C	NA	61	0	61	67.459	3.841	0	0	0	61	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--5	chr1:201947640	C	NA	79	0	79	64.215	8.961	0	0	0	79	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--6	chr1:201947640	C	NA	50	0	50	66.460	3.781	0	0	0	50	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--7	chr1:201947640	C	T	50	0.120	44	68.182	3.135	6	61.333	14.278	44	6	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--8	chr1:201947640	C	NA	87	0	87	66.080	7.338	0	0	0	87	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--GL	chr1:201947640	C	NA	68	0	68	65.221	7.493	0	0	0	68	0	TIMM17A(dist=7851),RNPEP(dist=4126)	intergenic	NA
RCC_T3--1	chr1:201972351	C	NA	40	0	40	66.225	7.095	0	0	0	40	0	MIR6740	ncRNA_exonic	NA
RCC_T3--2	chr1:201972351	C	NA	46	0	46	66.522	6.606	0	0	0	46	0	MIR6740	ncRNA_exonic	NA
RCC_T3--3	chr1:201972351	C	A	34	0.118	30	66.200	5.702	4	67.000	1.155	30	4	MIR6740	ncRNA_exonic	NA
RCC_T3--4	chr1:201972351	C	NA	30	0	30	67.567	4.516	0	0	0	30	0	MIR6740	ncRNA_exonic	NA
RCC_T3--5	chr1:201972351	C	NA	45	0	45	66.533	6.881	0	0	0	45	0	MIR6740	ncRNA_exonic	NA
RCC_T3--6	chr1:201972351	C	NA	40	0	40	65.750	5.943	0	0	0	40	0	MIR6740	ncRNA_exonic	NA
RCC_T3--7	chr1:201972351	C	NA	47	0	47	65.723	6.769	0	0	0	47	0	MIR6740	ncRNA_exonic	NA
RCC_T3--8	chr1:201972351	C	NA	43	0	43	66.767	4.297	0	0	0	43	0	MIR6740	ncRNA_exonic	NA
RCC_T3--GL	chr1:201972351	C	NA	34	0	33	67.333	4.573	0	0	0	33	0	MIR6740	ncRNA_exonic	NA
RCC_T3--1	chr1:202119508	C	NA	25	0	25	64.280	7.208	0	0	0	25	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:202119508	C	NA	25	0	25	64.640	7.879	0	0	0	25	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:202119508	C	NA	30	0	30	63.867	11.178	0	0	0	30	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:202119508	C	NA	36	0	35	62.914	9.147	0	0	0	35	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:202119508	C	NA	32	0	32	65.062	8.211	0	0	0	32	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:202119508	C	T	31	0.129	27	65.296	8.439	4	65.750	0.500	27	4	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:202119508	C	NA	36	0	36	63.417	11.355	0	0	0	36	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:202119508	C	NA	41	0	41	66.146	5.764	0	0	0	41	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:202119508	C	NA	33	0	33	63.364	9.457	0	0	0	33	0	PTPN7	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:205031723	C	NA	28	0	28	66.321	8.477	0	0	0	28	0	CNTN2	intronic	NA
RCC_T3--2	chr1:205031723	C	A	29	0.138	25	67.440	7.757	4	65.000	7.439	25	4	CNTN2	intronic	NA
RCC_T3--3	chr1:205031723	C	NA	20	0	20	65.350	8.100	0	0	0	20	0	CNTN2	intronic	NA
RCC_T3--4	chr1:205031723	C	NA	45	0	45	67.133	4.581	0	0	0	45	0	CNTN2	intronic	NA
RCC_T3--5	chr1:205031723	C	NA	43	0	43	68.163	4.386	0	0	0	43	0	CNTN2	intronic	NA
RCC_T3--6	chr1:205031723	C	NA	42	0	42	65.190	6.515	0	0	0	42	0	CNTN2	intronic	NA
RCC_T3--7	chr1:205031723	C	NA	31	0	31	66.129	8.036	0	0	0	31	0	CNTN2	intronic	NA
RCC_T3--8	chr1:205031723	C	NA	33	0	33	68.758	3.775	0	0	0	33	0	CNTN2	intronic	NA
RCC_T3--GL	chr1:205031723	C	NA	37	0	37	66.676	6.952	0	0	0	37	0	CNTN2	intronic	NA
RCC_T3--1	chr1:205033803	G	T	114	0.219	88	69.193	2.916	25	68.360	3.999	88	25	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:205033803	G	T	151	0.185	123	69.276	3.025	28	68.893	3.833	123	28	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:205033803	G	T	145	0.186	118	66.627	6.521	27	68.222	3.745	118	27	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:205033803	G	T	155	0.213	122	68.574	4.360	33	68.394	4.683	122	33	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:205033803	G	T	136	0.074	126	67.429	5.572	10	67.700	2.669	126	10	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:205033803	G	T	147	0.143	126	68.889	3.810	21	67.952	3.775	126	21	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:205033803	G	T	144	0.222	112	67.205	5.944	32	68.375	3.875	112	32	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:205033803	G	T	161	0.366	102	68.088	4.540	59	67.797	6.113	102	59	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:205033803	G	NA	163	0	163	67.454	4.824	0	0	0	163	0	CNTN2	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:205074271	C	T	100	0.190	81	67.198	5.636	19	66.526	7.684	81	19	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:205074271	C	T	112	0.232	86	68.035	3.870	26	65.692	7.347	86	26	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:205074271	C	T	137	0.226	106	66.660	6.848	31	66.677	6.794	106	31	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:205074271	C	T	127	0.150	108	67.435	6.754	19	66.211	6.901	108	19	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:205074271	C	T	98	0.031	95	66.558	5.558	3	66.667	6.110	95	3	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:205074271	C	T	128	0.109	114	66.974	6.407	14	66.643	4.483	114	14	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:205074271	C	T	104	0.154	88	67.568	4.751	16	68.250	4.405	88	16	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:205074271	C	T	149	0.188	120	67.458	4.605	28	65.714	4.705	120	28	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:205074271	C	NA	129	0	129	66.899	5.476	0	0	0	129	0	RBBP5	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:205308910	T	C	31	0.032	30	60.833	12.129	1	33.000	0.000	30	1	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:205308910	T	C	31	0.097	28	60.893	11.893	3	33.000	0.000	28	3	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:205308910	T	C	28	0.036	27	62.333	8.307	1	37.000	0.000	27	1	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:205308910	T	C	25	0.080	23	56.913	14.585	2	34.500	2.121	23	2	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:205308910	T	C	20	0.100	18	57.833	12.273	2	33.000	0.000	18	2	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:205308910	T	C	25	0.120	22	58.773	11.960	3	42.667	16.743	22	3	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:205308910	T	C	26	0.269	19	59.526	12.290	7	34.714	4.536	19	7	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:205308910	T	C	25	0.080	23	60.304	10.581	2	34.500	2.121	23	2	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:205308910	T	NA	36	0	36	61.472	10.225	0	0	0	36	0	KLHDC8A	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:205498459	C	NA	24	0	24	65.250	6.523	0	0	0	24	0	CDK18	exonic	synonymous_SNV
RCC_T3--2	chr1:205498459	C	NA	35	0	35	67.171	3.861	0	0	0	35	0	CDK18	exonic	synonymous_SNV
RCC_T3--3	chr1:205498459	C	NA	53	0	52	65.231	7.758	0	0	0	52	0	CDK18	exonic	synonymous_SNV
RCC_T3--4	chr1:205498459	C	NA	41	0	41	67.000	2.775	0	0	0	41	0	CDK18	exonic	synonymous_SNV
RCC_T3--5	chr1:205498459	C	NA	45	0	45	62.578	10.028	0	0	0	45	0	CDK18	exonic	synonymous_SNV
RCC_T3--6	chr1:205498459	C	NA	61	0	61	63.197	8.822	0	0	0	61	0	CDK18	exonic	synonymous_SNV
RCC_T3--7	chr1:205498459	C	NA	54	0	54	66.778	3.622	0	0	0	54	0	CDK18	exonic	synonymous_SNV
RCC_T3--8	chr1:205498459	C	T	34	0.118	30	63.567	8.799	4	68.000	2.449	30	4	CDK18	exonic	synonymous_SNV
RCC_T3--GL	chr1:205498459	C	NA	39	0	39	64.923	8.517	0	0	0	39	0	CDK18	exonic	synonymous_SNV
RCC_T3--1	chr1:207138983	A	NA	30	0	30	63.767	11.032	0	0	0	30	0	FCAMR	intronic	NA
RCC_T3--2	chr1:207138983	A	NA	27	0	27	68.185	3.247	0	0	0	27	0	FCAMR	intronic	NA
RCC_T3--3	chr1:207138983	A	NA	36	0	36	66.694	3.446	0	0	0	36	0	FCAMR	intronic	NA
RCC_T3--4	chr1:207138983	A	NA	30	0	30	65.900	6.200	0	0	0	30	0	FCAMR	intronic	NA
RCC_T3--5	chr1:207138983	A	NA	36	0	36	63.028	8.272	0	0	0	36	0	FCAMR	intronic	NA
RCC_T3--6	chr1:207138983	A	G	37	0.108	33	65.788	6.859	4	68.250	2.630	33	4	FCAMR	intronic	NA
RCC_T3--7	chr1:207138983	A	NA	39	0	39	67.000	3.846	0	0	0	39	0	FCAMR	intronic	NA
RCC_T3--8	chr1:207138983	A	NA	51	0	51	65.275	7.787	0	0	0	51	0	FCAMR	intronic	NA
RCC_T3--GL	chr1:207138983	A	NA	40	0	40	66.525	5.769	0	0	0	40	0	FCAMR	intronic	NA
RCC_T3--1	chr12:104174251	C	NA	14	0	14	68.214	4.475	0	0	0	14	0	NT5DC3	intronic	NA
RCC_T3--2	chr12:104174251	C	NA	31	0	31	66.968	8.248	0	0	0	31	0	NT5DC3	intronic	NA
RCC_T3--3	chr12:104174251	C	NA	18	0	18	68.000	2.787	0	0	0	18	0	NT5DC3	intronic	NA
RCC_T3--4	chr12:104174251	C	NA	23	0	23	66.304	7.713	0	0	0	23	0	NT5DC3	intronic	NA
RCC_T3--5	chr12:104174251	C	A	17	0.294	12	68.833	3.070	5	67.600	0.894	12	5	NT5DC3	intronic	NA
RCC_T3--6	chr12:104174251	C	NA	13	0	13	69.231	2.682	0	0	0	13	0	NT5DC3	intronic	NA
RCC_T3--7	chr12:104174251	C	NA	23	0	23	68.652	2.424	0	0	0	23	0	NT5DC3	intronic	NA
RCC_T3--8	chr12:104174251	C	NA	14	0	14	67.429	4.569	0	0	0	14	0	NT5DC3	intronic	NA
RCC_T3--GL	chr12:104174251	C	NA	36	0	36	67.222	4.134	0	0	0	36	0	NT5DC3	intronic	NA
RCC_T3--1	chr12:106564243	C	NA	30	0	30	68.267	7.182	0	0	0	30	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--2	chr12:106564243	C	NA	33	0	33	67.758	4.198	0	0	0	33	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--3	chr12:106564243	C	T	29	0.034	28	68.179	3.411	1	69.000	0.000	28	1	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--4	chr12:106564243	C	T	38	0.026	37	66.784	7.671	1	59.000	0.000	37	1	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--5	chr12:106564243	C	T	37	0.108	33	66.030	7.047	4	63.750	5.123	33	4	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--6	chr12:106564243	C	NA	27	0	27	66.111	8.437	0	0	0	27	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--7	chr12:106564243	C	NA	25	0	25	66.440	5.553	0	0	0	25	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--8	chr12:106564243	C	NA	35	0	35	68.086	3.266	0	0	0	35	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--GL	chr12:106564243	C	NA	33	0	33	65.121	8.343	0	0	0	33	0	NUAK1(dist=30432),CKAP4(dist=67416)	intergenic	NA
RCC_T3--1	chr12:109286705	G	NA	33	0	33	67.333	5.140	0	0	0	33	0	DAO	intronic	NA
RCC_T3--2	chr12:109286705	G	NA	26	0	26	65.000	8.768	0	0	0	26	0	DAO	intronic	NA
RCC_T3--3	chr12:109286705	G	NA	27	0	27	66.037	8.573	0	0	0	27	0	DAO	intronic	NA
RCC_T3--4	chr12:109286705	G	NA	40	0	40	68.125	2.681	0	0	0	40	0	DAO	intronic	NA
RCC_T3--5	chr12:109286705	G	NA	26	0	26	67.731	2.585	0	0	0	26	0	DAO	intronic	NA
RCC_T3--6	chr12:109286705	G	NA	21	0	21	64.476	8.436	0	0	0	21	0	DAO	intronic	NA
RCC_T3--7	chr12:109286705	G	NA	22	0	22	67.727	2.622	0	0	0	22	0	DAO	intronic	NA
RCC_T3--8	chr12:109286705	G	A	33	0.121	29	66.828	3.197	4	62.000	9.274	29	4	DAO	intronic	NA
RCC_T3--GL	chr12:109286705	G	NA	35	0	35	65.086	6.692	0	0	0	35	0	DAO	intronic	NA
RCC_T3--1	chr12:109536215	C	NA	30	0	30	65.367	9.015	0	0	0	30	0	UNG	exonic	synonymous_SNV
RCC_T3--2	chr12:109536215	C	NA	34	0	34	63.088	11.183	0	0	0	34	0	UNG	exonic	synonymous_SNV
RCC_T3--3	chr12:109536215	C	NA	42	0	42	63.381	8.798	0	0	0	42	0	UNG	exonic	synonymous_SNV
RCC_T3--4	chr12:109536215	C	NA	24	0	24	65.250	4.910	0	0	0	24	0	UNG	exonic	synonymous_SNV
RCC_T3--5	chr12:109536215	C	NA	31	0	31	63.903	7.888	0	0	0	31	0	UNG	exonic	synonymous_SNV
RCC_T3--6	chr12:109536215	C	NA	31	0	31	65.258	7.844	0	0	0	31	0	UNG	exonic	synonymous_SNV
RCC_T3--7	chr12:109536215	C	NA	32	0	32	66.750	6.984	0	0	0	32	0	UNG	exonic	synonymous_SNV
RCC_T3--8	chr12:109536215	C	T	54	0.111	48	65.354	8.936	6	62.333	5.241	48	6	UNG	exonic	synonymous_SNV
RCC_T3--GL	chr12:109536215	C	NA	49	0	49	63.898	8.491	0	0	0	49	0	UNG	exonic	synonymous_SNV
RCC_T3--1	chr12:109839076	A	NA	82	0	82	67.146	4.833	0	0	0	82	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:109839076	A	NA	83	0	83	67.096	6.050	0	0	0	83	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:109839076	A	NA	96	0	96	65.562	7.024	0	0	0	96	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:109839076	A	NA	82	0	82	67.695	4.060	0	0	0	82	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:109839076	A	G	58	0.103	52	68.173	3.341	6	67.667	1.966	52	6	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:109839076	A	NA	88	0	88	66.841	5.923	0	0	0	88	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:109839076	A	NA	73	0	73	65.904	8.669	0	0	0	73	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:109839076	A	NA	64	0	64	67.656	5.056	0	0	0	64	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:109839076	A	NA	93	0	93	67.290	5.001	0	0	0	93	0	MYO1H	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:113600991	C	T	28	0.143	24	62.167	9.319	4	65.250	0.957	24	4	DDX54	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:113600991	C	NA	31	0	31	65.323	5.845	0	0	0	31	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:113600991	C	NA	30	0	30	63.000	9.997	0	0	0	30	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:113600991	C	NA	39	0	35	63.029	10.371	0	0	0	35	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:113600991	C	NA	55	0	55	62.891	7.581	0	0	0	55	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:113600991	C	NA	33	0	33	59.788	12.757	0	0	0	33	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:113600991	C	NA	31	0	31	63.161	10.034	0	0	0	31	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:113600991	C	NA	30	0	30	65.933	8.128	0	0	0	30	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:113600991	C	NA	38	0	38	63.316	8.951	0	0	0	38	0	DDX54	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:113822117	A	NA	24	0	24	61.917	9.947	0	0	0	24	0	PLBD2	intronic	NA
RCC_T3--2	chr12:113822117	A	NA	32	0	32	65.281	6.371	0	0	0	32	0	PLBD2	intronic	NA
RCC_T3--3	chr12:113822117	A	NA	37	0	36	61.111	7.935	0	0	0	36	0	PLBD2	intronic	NA
RCC_T3--4	chr12:113822117	A	NA	31	0	31	63.677	5.319	0	0	0	31	0	PLBD2	intronic	NA
RCC_T3--5	chr12:113822117	A	NA	27	0	27	63.000	8.288	0	0	0	27	0	PLBD2	intronic	NA
RCC_T3--6	chr12:113822117	A	G	22	0.136	18	60.000	8.798	3	53.333	11.547	18	3	PLBD2	intronic	NA
RCC_T3--7	chr12:113822117	A	NA	31	0	31	61.065	9.923	0	0	0	31	0	PLBD2	intronic	NA
RCC_T3--8	chr12:113822117	A	NA	27	0	27	65.667	4.188	0	0	0	27	0	PLBD2	intronic	NA
RCC_T3--GL	chr12:113822117	A	NA	46	0	46	57.978	10.576	0	0	0	46	0	PLBD2	intronic	NA
RCC_T3--1	chr12:114386615	C	NA	37	0	37	66.973	4.658	0	0	0	37	0	RBM19	intronic	NA
RCC_T3--2	chr12:114386615	C	NA	30	0	30	67.767	3.308	0	0	0	30	0	RBM19	intronic	NA
RCC_T3--3	chr12:114386615	C	NA	46	0	46	65.500	9.201	0	0	0	46	0	RBM19	intronic	NA
RCC_T3--4	chr12:114386615	C	NA	46	0	46	66.957	3.366	0	0	0	46	0	RBM19	intronic	NA
RCC_T3--5	chr12:114386615	C	A	37	0.162	31	66.774	7.247	6	50.000	14.057	31	6	RBM19	intronic	NA
RCC_T3--6	chr12:114386615	C	NA	34	0	34	62.382	9.607	0	0	0	34	0	RBM19	intronic	NA
RCC_T3--7	chr12:114386615	C	NA	54	0	54	65.019	9.710	0	0	0	54	0	RBM19	intronic	NA
RCC_T3--8	chr12:114386615	C	NA	23	0	23	67.696	3.649	0	0	0	23	0	RBM19	intronic	NA
RCC_T3--GL	chr12:114386615	C	NA	37	0	37	64.541	8.697	0	0	0	37	0	RBM19	intronic	NA
RCC_T3--1	chr12:118476124	C	T	46	0.109	41	67.585	4.068	5	62.800	4.147	41	5	WSB2	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:118476124	C	NA	45	0	45	67.178	3.845	0	0	0	45	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:118476124	C	NA	44	0	44	65.659	5.847	0	0	0	44	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:118476124	C	NA	45	0	45	66.844	7.361	0	0	0	45	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:118476124	C	NA	46	0	46	66.978	6.072	0	0	0	46	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:118476124	C	NA	48	0	48	67.271	4.256	0	0	0	48	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:118476124	C	NA	55	0	55	68.018	5.212	0	0	0	55	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:118476124	C	NA	53	0	53	69.340	2.869	0	0	0	53	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:118476124	C	NA	58	0	58	67.741	4.517	0	0	0	58	0	WSB2	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:121442004	G	NA	131	0	131	66.313	5.322	0	0	0	131	0	C12orf43	exonic	synonymous_SNV
RCC_T3--2	chr12:121442004	G	C	151	0.007	150	65.953	7.811	1	64.000	0.000	150	1	C12orf43	exonic	synonymous_SNV
RCC_T3--3	chr12:121442004	G	NA	157	0	157	66.344	5.512	0	0	0	157	0	C12orf43	exonic	synonymous_SNV
RCC_T3--4	chr12:121442004	G	NA	136	0	136	67.029	5.508	0	0	0	136	0	C12orf43	exonic	synonymous_SNV
RCC_T3--5	chr12:121442004	G	C	116	0.034	111	65.973	5.839	4	64.250	6.344	111	4	C12orf43	exonic	synonymous_SNV
RCC_T3--6	chr12:121442004	G	C	149	0.094	134	64.560	8.556	14	57.857	12.372	134	14	C12orf43	exonic	synonymous_SNV
RCC_T3--7	chr12:121442004	G	NA	155	0	154	66.552	5.739	0	0	0	154	0	C12orf43	exonic	synonymous_SNV
RCC_T3--8	chr12:121442004	G	C	127	0.126	110	67.391	5.524	16	66.000	6.175	110	16	C12orf43	exonic	synonymous_SNV
RCC_T3--GL	chr12:121442004	G	NA	159	0	159	64.748	7.948	0	0	0	159	0	C12orf43	exonic	synonymous_SNV
RCC_T3--1	chr12:121878903	G	NA	33	0	33	67.636	4.014	0	0	0	33	0	KDM2B	exonic	stopgain_SNV
RCC_T3--2	chr12:121878903	G	NA	43	0	43	66.767	6.414	0	0	0	43	0	KDM2B	exonic	stopgain_SNV
RCC_T3--3	chr12:121878903	G	A	28	0.143	24	67.208	4.578	4	62.000	4.899	24	4	KDM2B	exonic	stopgain_SNV
RCC_T3--4	chr12:121878903	G	NA	49	0	49	66.204	6.161	0	0	0	49	0	KDM2B	exonic	stopgain_SNV
RCC_T3--5	chr12:121878903	G	NA	38	0	38	64.368	7.379	0	0	0	38	0	KDM2B	exonic	stopgain_SNV
RCC_T3--6	chr12:121878903	G	NA	43	0	43	65.349	6.686	0	0	0	43	0	KDM2B	exonic	stopgain_SNV
RCC_T3--7	chr12:121878903	G	NA	49	0	49	65.959	6.387	0	0	0	49	0	KDM2B	exonic	stopgain_SNV
RCC_T3--8	chr12:121878903	G	NA	43	0	43	66.581	5.534	0	0	0	43	0	KDM2B	exonic	stopgain_SNV
RCC_T3--GL	chr12:121878903	G	NA	37	0	37	65.135	8.670	0	0	0	37	0	KDM2B	exonic	stopgain_SNV
RCC_T3--1	chr12:132626544	C	NA	24	0	24	65.542	6.941	0	0	0	24	0	DDX51	intronic	NA
RCC_T3--2	chr12:132626544	C	NA	40	0	40	66.625	4.678	0	0	0	40	0	DDX51	intronic	NA
RCC_T3--3	chr12:132626544	C	NA	29	0	29	66.310	4.417	0	0	0	29	0	DDX51	intronic	NA
RCC_T3--4	chr12:132626544	C	NA	35	0	35	65.857	7.476	0	0	0	35	0	DDX51	intronic	NA
RCC_T3--5	chr12:132626544	C	T	18	0.167	15	66.333	3.773	3	62.667	2.082	15	3	DDX51	intronic	NA
RCC_T3--6	chr12:132626544	C	NA	44	0	44	66.023	4.449	0	0	0	44	0	DDX51	intronic	NA
RCC_T3--7	chr12:132626544	C	NA	34	0	34	64.882	6.404	0	0	0	34	0	DDX51	intronic	NA
RCC_T3--8	chr12:132626544	C	NA	30	0	30	65.600	5.386	0	0	0	30	0	DDX51	intronic	NA
RCC_T3--GL	chr12:132626544	C	NA	42	0	42	65.714	4.358	0	0	0	42	0	DDX51	intronic	NA
RCC_T3--1	chr12:133353765	G	NA	22	0	22	66.455	5.535	0	0	0	22	0	GOLGA3	intronic	NA
RCC_T3--2	chr12:133353765	G	NA	38	0	38	66.500	5.239	0	0	0	38	0	GOLGA3	intronic	NA
RCC_T3--3	chr12:133353765	G	NA	35	0	35	66.086	7.081	0	0	0	35	0	GOLGA3	intronic	NA
RCC_T3--4	chr12:133353765	G	NA	38	0	38	63.132	11.153	0	0	0	38	0	GOLGA3	intronic	NA
RCC_T3--5	chr12:133353765	G	NA	33	0	32	65.188	7.592	0	0	0	32	0	GOLGA3	intronic	NA
RCC_T3--6	chr12:133353765	G	A	24	0.125	21	64.095	9.241	3	64.333	1.155	21	3	GOLGA3	intronic	NA
RCC_T3--7	chr12:133353765	G	NA	29	0	29	63.276	11.019	0	0	0	29	0	GOLGA3	intronic	NA
RCC_T3--8	chr12:133353765	G	NA	31	0	31	63.871	9.237	0	0	0	31	0	GOLGA3	intronic	NA
RCC_T3--GL	chr12:133353765	G	NA	45	0	44	65.841	5.103	0	0	0	44	0	GOLGA3	intronic	NA
RCC_T3--1	chr1:220363039	A	NA	71	0	71	67.789	5.034	0	0	0	71	0	RAB3GAP2	intronic	NA
RCC_T3--2	chr1:220363039	A	G	83	0.120	73	65.562	7.448	10	68.300	7.243	73	10	RAB3GAP2	intronic	NA
RCC_T3--3	chr1:220363039	A	NA	105	0	105	65.362	7.343	0	0	0	105	0	RAB3GAP2	intronic	NA
RCC_T3--4	chr1:220363039	A	NA	75	0	75	66.760	5.227	0	0	0	75	0	RAB3GAP2	intronic	NA
RCC_T3--5	chr1:220363039	A	NA	54	0	52	65.596	6.043	0	0	0	52	0	RAB3GAP2	intronic	NA
RCC_T3--6	chr1:220363039	A	NA	89	0	88	67.307	5.023	0	0	0	88	0	RAB3GAP2	intronic	NA
RCC_T3--7	chr1:220363039	A	NA	133	0	132	66.909	6.015	0	0	0	132	0	RAB3GAP2	intronic	NA
RCC_T3--8	chr1:220363039	A	NA	98	0	98	66.173	6.383	0	0	0	98	0	RAB3GAP2	intronic	NA
RCC_T3--GL	chr1:220363039	A	NA	78	0	78	65.051	8.496	0	0	0	78	0	RAB3GAP2	intronic	NA
RCC_T3--1	chr12:20903790	T	A	132	0.167	110	68.645	4.192	22	67.045	9.940	110	22	SLCO1C1	exonic	synonymous_SNV
RCC_T3--2	chr12:20903790	T	A	160	0.219	125	67.712	6.118	35	68.743	4.025	125	35	SLCO1C1	exonic	synonymous_SNV
RCC_T3--3	chr12:20903790	T	A	155	0.232	119	67.277	5.741	36	68.528	6.627	119	36	SLCO1C1	exonic	synonymous_SNV
RCC_T3--4	chr12:20903790	T	A	142	0.225	110	68.127	4.247	32	69.844	1.986	110	32	SLCO1C1	exonic	synonymous_SNV
RCC_T3--5	chr12:20903790	T	A	156	0.096	141	67.163	6.305	15	67.400	4.014	141	15	SLCO1C1	exonic	synonymous_SNV
RCC_T3--6	chr12:20903790	T	A	168	0.185	137	67.898	4.848	31	68.226	3.084	137	31	SLCO1C1	exonic	synonymous_SNV
RCC_T3--7	chr12:20903790	T	A	163	0.221	127	67.685	4.712	36	68.861	3.712	127	36	SLCO1C1	exonic	synonymous_SNV
RCC_T3--8	chr12:20903790	T	A	159	0.195	128	68.719	3.017	31	68.032	3.710	128	31	SLCO1C1	exonic	synonymous_SNV
RCC_T3--GL	chr12:20903790	T	NA	198	0	198	67.379	5.112	0	0	0	198	0	SLCO1C1	exonic	synonymous_SNV
RCC_T3--1	chr1:22172559	C	NA	36	0	36	63.889	10.155	0	0	0	36	0	HSPG2	intronic	NA
RCC_T3--2	chr1:22172559	C	NA	32	0	32	66.625	5.148	0	0	0	32	0	HSPG2	intronic	NA
RCC_T3--3	chr1:22172559	C	NA	24	0	24	65.375	4.716	0	0	0	24	0	HSPG2	intronic	NA
RCC_T3--4	chr1:22172559	C	A	31	0.129	27	62.037	10.219	4	64.250	7.719	27	4	HSPG2	intronic	NA
RCC_T3--5	chr1:22172559	C	NA	42	0	42	64.643	6.899	0	0	0	42	0	HSPG2	intronic	NA
RCC_T3--6	chr1:22172559	C	NA	34	0	34	65.235	8.057	0	0	0	34	0	HSPG2	intronic	NA
RCC_T3--7	chr1:22172559	C	NA	30	0	30	65.867	7.794	0	0	0	30	0	HSPG2	intronic	NA
RCC_T3--8	chr1:22172559	C	NA	34	0	34	65.676	7.454	0	0	0	34	0	HSPG2	intronic	NA
RCC_T3--GL	chr1:22172559	C	NA	39	0	39	62.308	10.066	0	0	0	39	0	HSPG2	intronic	NA
RCC_T3--1	chr1:226043700	C	NA	49	0	49	68.857	3.541	0	0	0	49	0	TMEM63A	intronic	NA
RCC_T3--2	chr1:226043700	C	NA	68	0	68	69.147	3.629	0	0	0	68	0	TMEM63A	intronic	NA
RCC_T3--3	chr1:226043700	C	NA	48	0	48	67.292	6.381	0	0	0	48	0	TMEM63A	intronic	NA
RCC_T3--4	chr1:226043700	C	NA	45	0	45	67.689	5.426	0	0	0	45	0	TMEM63A	intronic	NA
RCC_T3--5	chr1:226043700	C	A	43	0.116	38	67.184	7.101	5	68.200	3.271	38	5	TMEM63A	intronic	NA
RCC_T3--6	chr1:226043700	C	NA	58	0	58	67.552	6.860	0	0	0	58	0	TMEM63A	intronic	NA
RCC_T3--7	chr1:226043700	C	NA	56	0	56	68.643	5.956	0	0	0	56	0	TMEM63A	intronic	NA
RCC_T3--8	chr1:226043700	C	NA	59	0	59	69.068	3.681	0	0	0	59	0	TMEM63A	intronic	NA
RCC_T3--GL	chr1:226043700	C	NA	49	0	49	67.490	6.532	0	0	0	49	0	TMEM63A	intronic	NA
RCC_T3--1	chr1:226050299	G	NA	31	0	31	66.161	5.417	0	0	0	31	0	TMEM63A	intronic	NA
RCC_T3--2	chr1:226050299	G	NA	39	0	39	65.564	6.198	0	0	0	39	0	TMEM63A	intronic	NA
RCC_T3--3	chr1:226050299	G	NA	50	0	50	63.580	8.172	0	0	0	50	0	TMEM63A	intronic	NA
RCC_T3--4	chr1:226050299	G	NA	33	0	33	65.818	4.626	0	0	0	33	0	TMEM63A	intronic	NA
RCC_T3--5	chr1:226050299	G	A	34	0.147	29	62.828	8.548	5	66.000	2.121	29	5	TMEM63A	intronic	NA
RCC_T3--6	chr1:226050299	G	NA	50	0	50	64.820	7.743	0	0	0	50	0	TMEM63A	intronic	NA
RCC_T3--7	chr1:226050299	G	NA	47	0	47	64.213	7.471	0	0	0	47	0	TMEM63A	intronic	NA
RCC_T3--8	chr1:226050299	G	NA	44	0	44	65.818	4.336	0	0	0	44	0	TMEM63A	intronic	NA
RCC_T3--GL	chr1:226050299	G	NA	38	0	38	64.211	9.230	0	0	0	38	0	TMEM63A	intronic	NA
RCC_T3--1	chr1:226074352	C	G	40	0.375	25	68.080	4.252	15	63.800	11.111	25	15	LEFTY1	UTR3	NA
RCC_T3--2	chr1:226074352	C	G	59	0.203	47	67.021	5.980	12	67.667	4.119	47	12	LEFTY1	UTR3	NA
RCC_T3--3	chr1:226074352	C	G	65	0.385	40	66.800	8.367	25	68.520	4.602	40	25	LEFTY1	UTR3	NA
RCC_T3--4	chr1:226074352	C	G	51	0.196	41	68.049	4.074	10	68.700	5.638	41	10	LEFTY1	UTR3	NA
RCC_T3--5	chr1:226074352	C	G	52	0.038	50	67.600	6.649	2	70.000	1.414	50	2	LEFTY1	UTR3	NA
RCC_T3--6	chr1:226074352	C	G	63	0.095	57	67.088	6.200	6	69.167	3.189	57	6	LEFTY1	UTR3	NA
RCC_T3--7	chr1:226074352	C	G	48	0.375	30	67.633	5.404	18	67.944	4.505	30	18	LEFTY1	UTR3	NA
RCC_T3--8	chr1:226074352	C	G	42	0.238	32	67.812	5.932	10	69.200	5.574	32	10	LEFTY1	UTR3	NA
RCC_T3--GL	chr1:226074352	C	NA	54	0	54	67.519	4.492	0	0	0	54	0	LEFTY1	UTR3	NA
RCC_T3--1	chr1:226923604	G	NA	35	0	35	67.286	7.019	0	0	0	35	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:226923604	G	NA	46	0	46	66.130	7.506	0	0	0	46	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:226923604	G	NA	52	0	52	66.308	6.185	0	0	0	52	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:226923604	G	NA	49	0	49	67.469	4.783	0	0	0	49	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:226923604	G	NA	42	0	42	66.548	4.870	0	0	0	42	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:226923604	G	NA	60	0	60	66.017	7.545	0	0	0	60	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:226923604	G	A	56	0.107	50	66.720	6.171	6	62.333	13.095	50	6	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:226923604	G	NA	58	0	58	66.431	6.027	0	0	0	58	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:226923604	G	NA	56	0	56	65.607	5.297	0	0	0	56	0	ITPKB	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:27058590	A	NA	26	0	26	69.462	3.325	0	0	0	26	0	ASUN	intronic	NA
RCC_T3--2	chr12:27058590	A	NA	31	0	31	69.355	3.498	0	0	0	31	0	ASUN	intronic	NA
RCC_T3--3	chr12:27058590	A	NA	21	0	21	69.381	3.853	0	0	0	21	0	ASUN	intronic	NA
RCC_T3--4	chr12:27058590	A	NA	25	0	25	68.160	5.778	0	0	0	25	0	ASUN	intronic	NA
RCC_T3--5	chr12:27058590	A	NA	23	0	23	69.348	3.472	0	0	0	23	0	ASUN	intronic	NA
RCC_T3--6	chr12:27058590	A	NA	46	0	46	68.783	3.299	0	0	0	46	0	ASUN	intronic	NA
RCC_T3--7	chr12:27058590	A	G	28	0.143	24	68.833	4.050	4	71.750	0.500	24	4	ASUN	intronic	NA
RCC_T3--8	chr12:27058590	A	NA	25	0	25	67.560	8.775	0	0	0	25	0	ASUN	intronic	NA
RCC_T3--GL	chr12:27058590	A	NA	49	0	49	67.245	4.671	0	0	0	49	0	ASUN	intronic	NA
RCC_T3--1	chr1:229462392	C	NA	25	0	25	67.160	4.696	0	0	0	25	0	CCSAP	intronic	NA
RCC_T3--2	chr1:229462392	C	NA	25	0	25	66.440	7.985	0	0	0	25	0	CCSAP	intronic	NA
RCC_T3--3	chr1:229462392	C	NA	36	0	36	67.611	4.976	0	0	0	36	0	CCSAP	intronic	NA
RCC_T3--4	chr1:229462392	C	NA	33	0	33	65.970	7.024	0	0	0	33	0	CCSAP	intronic	NA
RCC_T3--5	chr1:229462392	C	NA	25	0	25	66.720	6.195	0	0	0	25	0	CCSAP	intronic	NA
RCC_T3--6	chr1:229462392	C	NA	24	0	24	66.750	5.127	0	0	0	24	0	CCSAP	intronic	NA
RCC_T3--7	chr1:229462392	C	T	37	0.135	32	68.438	4.265	5	63.200	1.643	32	5	CCSAP	intronic	NA
RCC_T3--8	chr1:229462392	C	NA	36	0	36	65.972	8.801	0	0	0	36	0	CCSAP	intronic	NA
RCC_T3--GL	chr1:229462392	C	NA	42	0	42	65.167	7.529	0	0	0	42	0	CCSAP	intronic	NA
RCC_T3--1	chr1:231355689	C	NA	36	0	36	67.861	2.919	0	0	0	36	0	TRIM67	UTR3	NA
RCC_T3--2	chr1:231355689	C	NA	51	0	51	66.843	5.240	0	0	0	51	0	TRIM67	UTR3	NA
RCC_T3--3	chr1:231355689	C	A	44	0.136	38	65.579	8.726	6	66.500	2.345	38	6	TRIM67	UTR3	NA
RCC_T3--4	chr1:231355689	C	NA	52	0	51	67.118	6.039	0	0	0	51	0	TRIM67	UTR3	NA
RCC_T3--5	chr1:231355689	C	NA	51	0	51	67.118	6.781	0	0	0	51	0	TRIM67	UTR3	NA
RCC_T3--6	chr1:231355689	C	NA	49	0	49	66.816	6.766	0	0	0	49	0	TRIM67	UTR3	NA
RCC_T3--7	chr1:231355689	C	NA	50	0	50	68.220	4.032	0	0	0	50	0	TRIM67	UTR3	NA
RCC_T3--8	chr1:231355689	C	NA	69	0	69	68.261	4.133	0	0	0	69	0	TRIM67	UTR3	NA
RCC_T3--GL	chr1:231355689	C	NA	38	0	38	64.974	8.008	0	0	0	38	0	TRIM67	UTR3	NA
RCC_T3--1	chr1:24389970	C	NA	30	0	30	66.067	7.301	0	0	0	30	0	MYOM3	intronic	NA
RCC_T3--2	chr1:24389970	C	NA	51	0	51	63.588	10.566	0	0	0	51	0	MYOM3	intronic	NA
RCC_T3--3	chr1:24389970	C	NA	55	0	55	65.600	7.365	0	0	0	55	0	MYOM3	intronic	NA
RCC_T3--4	chr1:24389970	C	T	40	0.150	34	64.353	7.397	6	61.167	6.145	34	6	MYOM3	intronic	NA
RCC_T3--5	chr1:24389970	C	NA	32	0	32	63.312	9.110	0	0	0	32	0	MYOM3	intronic	NA
RCC_T3--6	chr1:24389970	C	NA	38	0	38	63.789	10.264	0	0	0	38	0	MYOM3	intronic	NA
RCC_T3--7	chr1:24389970	C	NA	43	0	43	65.442	6.843	0	0	0	43	0	MYOM3	intronic	NA
RCC_T3--8	chr1:24389970	C	NA	39	0	39	65.590	7.436	0	0	0	39	0	MYOM3	intronic	NA
RCC_T3--GL	chr1:24389970	C	NA	45	0	45	62.867	8.774	0	0	0	45	0	MYOM3	intronic	NA
RCC_T3--1	chr1:244217624	G	A	114	0.140	98	67.092	6.362	16	66.875	3.948	98	16	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:244217624	G	A	132	0.174	109	67.073	4.578	23	66.783	8.124	109	23	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:244217624	G	A	130	0.215	102	66.255	6.228	28	65.571	6.796	102	28	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:244217624	G	A	120	0.283	86	67.523	3.606	34	68.559	3.475	86	34	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:244217624	G	A	145	0.055	137	66.891	5.724	8	64.125	12.800	137	8	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:244217624	G	A	144	0.139	124	66.823	7.252	20	66.000	5.991	124	20	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:244217624	G	A	152	0.316	104	67.067	5.883	48	66.521	6.779	104	48	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:244217624	G	A	140	0.193	113	67.929	3.492	27	66.000	6.000	113	27	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:244217624	G	NA	145	0	145	66.490	5.862	0	0	0	145	0	ZBTB18	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:245850690	C	NA	58	0	58	65.741	5.955	0	0	0	58	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:245850690	C	NA	51	0	51	64.098	9.341	0	0	0	51	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:245850690	C	NA	41	0	41	62.537	10.548	0	0	0	41	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:245850690	C	NA	61	0	60	65.067	7.008	0	0	0	60	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:245850690	C	NA	61	0	61	62.820	9.516	0	0	0	61	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:245850690	C	NA	72	0	72	64.625	7.981	0	0	0	72	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:245850690	C	T	47	0.128	41	66.341	6.707	6	65.000	0.894	41	6	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:245850690	C	NA	76	0	76	64.829	8.775	0	0	0	76	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:245850690	C	NA	55	0	55	60.673	13.009	0	0	0	55	0	KIF26B	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:24661312	A	G	17	0.176	14	64.143	7.745	3	69.333	1.155	14	3	GRHL3	intronic	NA
RCC_T3--2	chr1:24661312	A	NA	32	0	32	67.438	4.189	0	0	0	32	0	GRHL3	intronic	NA
RCC_T3--3	chr1:24661312	A	NA	30	0	30	65.067	9.570	0	0	0	30	0	GRHL3	intronic	NA
RCC_T3--4	chr1:24661312	A	NA	33	0	32	67.750	3.992	0	0	0	32	0	GRHL3	intronic	NA
RCC_T3--5	chr1:24661312	A	NA	21	0	21	67.667	4.127	0	0	0	21	0	GRHL3	intronic	NA
RCC_T3--6	chr1:24661312	A	NA	20	0	20	65.050	7.380	0	0	0	20	0	GRHL3	intronic	NA
RCC_T3--7	chr1:24661312	A	NA	24	0	24	68.000	3.695	0	0	0	24	0	GRHL3	intronic	NA
RCC_T3--8	chr1:24661312	A	NA	24	0	24	66.333	4.072	0	0	0	24	0	GRHL3	intronic	NA
RCC_T3--GL	chr1:24661312	A	NA	37	0	37	67.027	4.444	0	0	0	37	0	GRHL3	intronic	NA
RCC_T3--1	chr1:24664094	C	NA	39	0	38	66.842	6.989	0	0	0	38	0	GRHL3	intronic	NA
RCC_T3--2	chr1:24664094	C	NA	43	0	43	66.744	6.211	0	0	0	43	0	GRHL3	intronic	NA
RCC_T3--3	chr1:24664094	C	NA	55	0	55	64.309	10.123	0	0	0	55	0	GRHL3	intronic	NA
RCC_T3--4	chr1:24664094	C	NA	59	0	59	66.017	5.303	0	0	0	59	0	GRHL3	intronic	NA
RCC_T3--5	chr1:24664094	C	NA	55	0	55	66.655	6.461	0	0	0	55	0	GRHL3	intronic	NA
RCC_T3--6	chr1:24664094	C	NA	61	0	61	66.164	6.553	0	0	0	61	0	GRHL3	intronic	NA
RCC_T3--7	chr1:24664094	C	NA	64	0	64	65.422	8.088	0	0	0	64	0	GRHL3	intronic	NA
RCC_T3--8	chr1:24664094	C	T	62	0.129	54	67.630	5.674	8	70.125	1.356	54	8	GRHL3	intronic	NA
RCC_T3--GL	chr1:24664094	C	NA	55	0	55	62.800	9.947	0	0	0	55	0	GRHL3	intronic	NA
RCC_T3--1	chr1:247614945	T	C	65	0.015	64	61.172	9.035	1	33.000	0.000	64	1	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:247614945	T	NA	68	0	68	60.691	10.293	0	0	0	68	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:247614945	T	NA	71	0	71	59.944	11.465	0	0	0	71	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:247614945	T	NA	67	0	67	62.806	8.704	0	0	0	67	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:247614945	T	NA	48	0	48	59.938	10.356	0	0	0	48	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:247614945	T	NA	78	0	76	56.342	13.957	0	0	0	76	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:247614945	T	C	71	0.169	59	60.610	11.323	12	60.083	12.979	59	12	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:247614945	T	NA	80	0	80	61.487	9.249	0	0	0	80	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:247614945	T	NA	59	0	57	61.000	10.100	0	0	0	57	0	OR2B11	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:48370377	C	T	54	0.370	34	65.882	6.193	20	66.250	4.025	34	20	COL2A1	intronic	NA
RCC_T3--2	chr12:48370377	C	T	57	0.246	43	67.349	3.798	14	66.000	4.658	43	14	COL2A1	intronic	NA
RCC_T3--3	chr12:48370377	C	T	51	0.255	38	67.237	3.397	13	66.308	7.227	38	13	COL2A1	intronic	NA
RCC_T3--4	chr12:48370377	C	T	33	0.364	21	68.714	2.513	12	65.833	4.407	21	12	COL2A1	intronic	NA
RCC_T3--5	chr12:48370377	C	T	35	0.057	33	64.848	7.133	2	69.000	1.414	33	2	COL2A1	intronic	NA
RCC_T3--6	chr12:48370377	C	T	46	0.130	40	64.925	7.553	6	66.667	3.830	40	6	COL2A1	intronic	NA
RCC_T3--7	chr12:48370377	C	T	41	0.268	30	66.800	3.284	11	69.545	2.841	30	11	COL2A1	intronic	NA
RCC_T3--8	chr12:48370377	C	T	38	0.289	27	64.148	8.388	11	62.545	10.848	27	11	COL2A1	intronic	NA
RCC_T3--GL	chr12:48370377	C	NA	46	0	46	64.761	8.298	0	0	0	46	0	COL2A1	intronic	NA
RCC_T3--1	chr12:49360356	A	G	26	0.154	22	64.864	8.368	4	67.500	4.123	22	4	WNT10B	intronic	NA
RCC_T3--2	chr12:49360356	A	NA	62	0	62	67.839	7.492	0	0	0	62	0	WNT10B	intronic	NA
RCC_T3--3	chr12:49360356	A	NA	54	0	54	65.426	9.396	0	0	0	54	0	WNT10B	intronic	NA
RCC_T3--4	chr12:49360356	A	NA	43	0	43	66.209	6.746	0	0	0	43	0	WNT10B	intronic	NA
RCC_T3--5	chr12:49360356	A	NA	38	0	38	67.474	4.203	0	0	0	38	0	WNT10B	intronic	NA
RCC_T3--6	chr12:49360356	A	NA	48	0	48	65.854	8.053	0	0	0	48	0	WNT10B	intronic	NA
RCC_T3--7	chr12:49360356	A	NA	31	0	31	67.645	7.246	0	0	0	31	0	WNT10B	intronic	NA
RCC_T3--8	chr12:49360356	A	NA	67	0	67	67.970	4.056	0	0	0	67	0	WNT10B	intronic	NA
RCC_T3--GL	chr12:49360356	A	NA	60	0	60	66.383	7.731	0	0	0	60	0	WNT10B	intronic	NA
RCC_T3--1	chr12:53447179	C	NA	29	0	29	68.862	3.259	0	0	0	29	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--2	chr12:53447179	C	NA	36	0	36	66.028	7.497	0	0	0	36	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--3	chr12:53447179	C	NA	36	0	36	65.500	7.331	0	0	0	36	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--4	chr12:53447179	C	NA	34	0	34	65.912	7.399	0	0	0	34	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--5	chr12:53447179	C	NA	28	0	28	63.464	7.705	0	0	0	28	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--6	chr12:53447179	C	NA	39	0	39	65.231	8.254	0	0	0	39	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--7	chr12:53447179	C	NA	25	0	25	62.680	11.357	0	0	0	25	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--8	chr12:53447179	C	A	26	0.154	22	67.091	3.927	4	57.500	16.381	22	4	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--GL	chr12:53447179	C	NA	36	0	36	62.972	9.697	0	0	0	36	0	RP11-983P16.4(NR_033854:exon3:c.297+1G>T)	ncRNA_splicing	NA
RCC_T3--1	chr12:56537196	A	NA	35	0	35	67.686	4.206	0	0	0	35	0	ESYT1	intronic	NA
RCC_T3--2	chr12:56537196	A	NA	49	0	49	68.306	3.255	0	0	0	49	0	ESYT1	intronic	NA
RCC_T3--3	chr12:56537196	A	NA	36	0	36	65.889	5.126	0	0	0	36	0	ESYT1	intronic	NA
RCC_T3--4	chr12:56537196	A	NA	41	0	40	67.775	4.616	0	0	0	40	0	ESYT1	intronic	NA
RCC_T3--5	chr12:56537196	A	T	24	0.125	21	60.762	12.054	3	67.333	4.041	21	3	ESYT1	intronic	NA
RCC_T3--6	chr12:56537196	A	NA	29	0	29	66.862	3.889	0	0	0	29	0	ESYT1	intronic	NA
RCC_T3--7	chr12:56537196	A	NA	30	0	30	65.533	7.295	0	0	0	30	0	ESYT1	intronic	NA
RCC_T3--8	chr12:56537196	A	NA	25	0	25	67.840	2.703	0	0	0	25	0	ESYT1	intronic	NA
RCC_T3--GL	chr12:56537196	A	NA	39	0	39	66.179	3.612	0	0	0	39	0	ESYT1	intronic	NA
RCC_T3--1	chr12:57849573	C	NA	23	0	23	67.783	3.029	0	0	0	23	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:57849573	C	NA	30	0	30	66.233	4.508	0	0	0	30	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:57849573	C	NA	25	0	25	66.280	6.107	0	0	0	25	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:57849573	C	NA	25	0	25	68.320	3.485	0	0	0	25	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:57849573	C	NA	25	0	25	67.120	3.745	0	0	0	25	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:57849573	C	NA	29	0	29	66.379	4.754	0	0	0	29	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:57849573	C	A	22	0.182	18	66.167	6.233	4	60.000	18.129	18	4	INHBE	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:57849573	C	NA	28	0	28	67.036	4.418	0	0	0	28	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:57849573	C	NA	35	0	35	62.543	10.910	0	0	0	35	0	INHBE	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:58009405	C	A	52	0.346	34	66.471	6.850	18	67.722	3.770	34	18	ARHGEF25	exonic	synonymous_SNV
RCC_T3--2	chr12:58009405	C	A	79	0.063	74	67.851	4.110	5	58.400	14.484	74	5	ARHGEF25	exonic	synonymous_SNV
RCC_T3--3	chr12:58009405	C	A	78	0.205	62	65.452	8.063	16	67.875	2.655	62	16	ARHGEF25	exonic	synonymous_SNV
RCC_T3--4	chr12:58009405	C	A	73	0.192	59	66.695	6.706	14	67.286	3.197	59	14	ARHGEF25	exonic	synonymous_SNV
RCC_T3--5	chr12:58009405	C	A	73	0.068	68	65.706	6.409	5	63.600	8.385	68	5	ARHGEF25	exonic	synonymous_SNV
RCC_T3--6	chr12:58009405	C	A	82	0.073	75	66.867	7.100	6	63.833	4.997	75	6	ARHGEF25	exonic	synonymous_SNV
RCC_T3--7	chr12:58009405	C	A	111	0.261	81	65.580	7.638	29	63.724	12.092	81	29	ARHGEF25	exonic	synonymous_SNV
RCC_T3--8	chr12:58009405	C	A	84	0.119	74	67.689	3.745	10	64.000	8.055	74	10	ARHGEF25	exonic	synonymous_SNV
RCC_T3--GL	chr12:58009405	C	NA	81	0	81	65.926	7.136	0	0	0	81	0	ARHGEF25	exonic	synonymous_SNV
RCC_T3--1	chr1:26311083	C	NA	33	0	33	67.848	4.017	0	0	0	33	0	PAFAH2	intronic	NA
RCC_T3--2	chr1:26311083	C	NA	37	0	37	68.892	3.688	0	0	0	37	0	PAFAH2	intronic	NA
RCC_T3--3	chr1:26311083	C	NA	24	0	24	68.792	6.406	0	0	0	24	0	PAFAH2	intronic	NA
RCC_T3--4	chr1:26311083	C	NA	28	0	28	69.357	2.921	0	0	0	28	0	PAFAH2	intronic	NA
RCC_T3--5	chr1:26311083	C	T	24	0.167	20	67.450	3.720	4	68.000	1.414	20	4	PAFAH2	intronic	NA
RCC_T3--6	chr1:26311083	C	NA	30	0	30	67.733	3.532	0	0	0	30	0	PAFAH2	intronic	NA
RCC_T3--7	chr1:26311083	C	NA	34	0	34	65.206	9.862	0	0	0	34	0	PAFAH2	intronic	NA
RCC_T3--8	chr1:26311083	C	NA	31	0	31	67.935	4.553	0	0	0	31	0	PAFAH2	intronic	NA
RCC_T3--GL	chr1:26311083	C	NA	36	0	36	68.083	3.767	0	0	0	36	0	PAFAH2	intronic	NA
RCC_T3--1	chr12:6442357	C	A	16	0.188	13	63.692	9.801	3	60.667	3.055	13	3	TNFRSF1A	intronic	NA
RCC_T3--2	chr12:6442357	C	NA	33	0	33	66.000	4.555	0	0	0	33	0	TNFRSF1A	intronic	NA
RCC_T3--3	chr12:6442357	C	NA	33	0	33	65.424	8.216	0	0	0	33	0	TNFRSF1A	intronic	NA
RCC_T3--4	chr12:6442357	C	NA	23	0	23	64.087	9.105	0	0	0	23	0	TNFRSF1A	intronic	NA
RCC_T3--5	chr12:6442357	C	NA	33	0	33	62.909	7.042	0	0	0	33	0	TNFRSF1A	intronic	NA
RCC_T3--6	chr12:6442357	C	NA	42	0	42	62.214	10.703	0	0	0	42	0	TNFRSF1A	intronic	NA
RCC_T3--7	chr12:6442357	C	NA	32	0	32	63.906	9.552	0	0	0	32	0	TNFRSF1A	intronic	NA
RCC_T3--8	chr12:6442357	C	NA	40	0	40	63.750	7.821	0	0	0	40	0	TNFRSF1A	intronic	NA
RCC_T3--GL	chr12:6442357	C	NA	35	0	35	62.429	11.346	0	0	0	35	0	TNFRSF1A	intronic	NA
RCC_T3--1	chr12:6484047	T	C	32	0.125	28	64.929	4.921	4	64.750	2.500	28	4	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:6484047	T	NA	31	0	31	64.032	10.094	0	0	0	31	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:6484047	T	NA	43	0	43	65.163	7.024	0	0	0	43	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:6484047	T	NA	39	0	38	64.105	8.658	0	0	0	38	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:6484047	T	NA	16	0	16	65.188	6.794	0	0	0	16	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:6484047	T	NA	45	0	45	62.667	9.611	0	0	0	45	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:6484047	T	NA	52	0	50	65.120	5.619	0	0	0	50	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:6484047	T	NA	43	0	43	63.930	9.226	0	0	0	43	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:6484047	T	NA	43	0	42	64.190	8.583	0	0	0	42	0	SCNN1A	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:26589656	G	NA	27	0	27	67.333	6.367	0	0	0	27	0	CEP85	intronic	NA
RCC_T3--2	chr1:26589656	G	NA	30	0	30	68.333	5.020	0	0	0	30	0	CEP85	intronic	NA
RCC_T3--3	chr1:26589656	G	NA	30	0	30	68.633	3.662	0	0	0	30	0	CEP85	intronic	NA
RCC_T3--4	chr1:26589656	G	NA	23	0	23	67.870	3.266	0	0	0	23	0	CEP85	intronic	NA
RCC_T3--5	chr1:26589656	G	NA	17	0	16	65.750	5.568	0	0	0	16	0	CEP85	intronic	NA
RCC_T3--6	chr1:26589656	G	T	30	0.133	26	66.769	5.164	4	68.500	1.000	26	4	CEP85	intronic	NA
RCC_T3--7	chr1:26589656	G	NA	27	0	27	64.926	7.280	0	0	0	27	0	CEP85	intronic	NA
RCC_T3--8	chr1:26589656	G	NA	24	0	24	67.542	3.856	0	0	0	24	0	CEP85	intronic	NA
RCC_T3--GL	chr1:26589656	G	NA	46	0	46	66.348	4.999	0	0	0	46	0	CEP85	intronic	NA
RCC_T3--1	chr12:6702478	C	NA	57	0	57	67.316	6.191	0	0	0	57	0	CHD4	intronic	NA
RCC_T3--2	chr12:6702478	C	G	76	0.118	67	68.224	5.802	9	67.889	4.567	67	9	CHD4	intronic	NA
RCC_T3--3	chr12:6702478	C	NA	68	0	68	68.750	3.453	0	0	0	68	0	CHD4	intronic	NA
RCC_T3--4	chr12:6702478	C	NA	82	0	82	68.037	6.127	0	0	0	82	0	CHD4	intronic	NA
RCC_T3--5	chr12:6702478	C	NA	69	0	69	67.652	6.082	0	0	0	69	0	CHD4	intronic	NA
RCC_T3--6	chr12:6702478	C	NA	77	0	77	68.494	4.263	0	0	0	77	0	CHD4	intronic	NA
RCC_T3--7	chr12:6702478	C	NA	84	0	84	68.429	3.612	0	0	0	84	0	CHD4	intronic	NA
RCC_T3--8	chr12:6702478	C	NA	64	0	64	67.641	5.956	0	0	0	64	0	CHD4	intronic	NA
RCC_T3--GL	chr12:6702478	C	NA	93	0	93	67.290	6.548	0	0	0	93	0	CHD4	intronic	NA
RCC_T3--1	chr12:6839950	A	NA	34	0	34	66.588	3.862	0	0	0	34	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:6839950	A	NA	46	0	46	66.087	8.060	0	0	0	46	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:6839950	A	NA	41	0	41	67.951	4.283	0	0	0	41	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:6839950	A	NA	36	0	36	66.083	5.633	0	0	0	36	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:6839950	A	G	36	0.111	32	65.281	5.898	4	65.500	5.802	32	4	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:6839950	A	NA	34	0	34	66.235	7.758	0	0	0	34	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:6839950	A	NA	34	0	34	66.735	3.596	0	0	0	34	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:6839950	A	NA	49	0	49	67.000	6.228	0	0	0	49	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:6839950	A	NA	56	0	56	64.964	7.573	0	0	0	56	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:6839952	C	T	34	0.118	30	67.200	4.589	4	64.250	9.287	30	4	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--2	chr12:6839952	C	NA	44	0	44	66.909	4.826	0	0	0	44	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--3	chr12:6839952	C	NA	41	0	41	67.341	5.097	0	0	0	41	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--4	chr12:6839952	C	NA	36	0	36	65.889	5.961	0	0	0	36	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--5	chr12:6839952	C	NA	39	0	39	64.795	7.484	0	0	0	39	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--6	chr12:6839952	C	NA	34	0	34	65.765	8.098	0	0	0	34	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--7	chr12:6839952	C	NA	32	0	32	68.250	3.233	0	0	0	32	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--8	chr12:6839952	C	NA	50	0	50	66.260	5.774	0	0	0	50	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr12:6839952	C	NA	56	0	56	64.946	8.361	0	0	0	56	0	COPS7A	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:27216330	C	NA	21	0	21	65.905	4.647	0	0	0	21	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:27216330	C	NA	27	0	27	63.630	9.846	0	0	0	27	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:27216330	C	NA	40	0	40	64.000	9.204	0	0	0	40	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:27216330	C	A	37	0.108	33	63.545	8.288	4	66.250	3.304	33	4	GPN2	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:27216330	C	NA	22	0	22	65.500	4.318	0	0	0	22	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:27216330	C	NA	29	0	29	66.724	3.835	0	0	0	29	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:27216330	C	NA	22	0	22	64.682	5.065	0	0	0	22	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:27216330	C	NA	41	0	41	63.732	10.390	0	0	0	41	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:27216330	C	NA	39	0	39	61.667	8.125	0	0	0	39	0	GPN2	exonic	nonsynonymous_SNV
RCC_T3--1	chr12:7719066	T	NA	14	0	14	66.429	7.449	0	0	0	14	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--2	chr12:7719066	T	NA	16	0	16	68.375	3.384	0	0	0	16	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--3	chr12:7719066	T	NA	29	0	29	67.103	5.240	0	0	0	29	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--4	chr12:7719066	T	NA	30	0	30	67.367	5.684	0	0	0	30	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--5	chr12:7719066	T	NA	15	0	15	68.067	4.026	0	0	0	15	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--6	chr12:7719066	T	NA	40	0	40	68.650	3.577	0	0	0	40	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--7	chr12:7719066	T	C	43	0.140	37	68.162	7.069	6	65.833	2.563	37	6	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--8	chr12:7719066	T	NA	37	0	36	68.333	5.420	0	0	0	36	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--GL	chr12:7719066	T	NA	39	0	39	67.846	5.076	0	0	0	39	0	CD163(dist=62652),APOBEC1(dist=82930)	intergenic	NA
RCC_T3--1	chr12:7719495	C	NA	29	0	29	68.552	3.376	0	0	0	29	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--2	chr12:7719495	C	NA	26	0	26	66.692	7.729	0	0	0	26	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--3	chr12:7719495	C	NA	39	0	39	67.333	4.009	0	0	0	39	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--4	chr12:7719495	C	NA	50	0	50	64.400	9.109	0	0	0	50	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--5	chr12:7719495	C	A	32	0.125	28	65.571	6.101	4	68.500	3.512	28	4	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--6	chr12:7719495	C	NA	31	0	31	67.032	5.036	0	0	0	31	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--7	chr12:7719495	C	NA	28	0	28	66.714	3.619	0	0	0	28	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--8	chr12:7719495	C	NA	45	0	45	67.244	3.543	0	0	0	45	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--GL	chr12:7719495	C	NA	54	0	54	64.630	8.038	0	0	0	54	0	CD163(dist=63081),APOBEC1(dist=82501)	intergenic	NA
RCC_T3--1	chr12:8201519	T	NA	25	0	25	70.080	2.707	0	0	0	25	0	FOXJ2	intronic	NA
RCC_T3--2	chr12:8201519	T	NA	38	0	38	68.789	3.779	0	0	0	38	0	FOXJ2	intronic	NA
RCC_T3--3	chr12:8201519	T	A	27	0.185	22	69.727	2.567	5	63.200	1.643	22	5	FOXJ2	intronic	NA
RCC_T3--4	chr12:8201519	T	NA	38	0	38	69.026	4.371	0	0	0	38	0	FOXJ2	intronic	NA
RCC_T3--5	chr12:8201519	T	NA	31	0	31	69.161	3.579	0	0	0	31	0	FOXJ2	intronic	NA
RCC_T3--6	chr12:8201519	T	NA	32	0	32	68.844	2.963	0	0	0	32	0	FOXJ2	intronic	NA
RCC_T3--7	chr12:8201519	T	NA	56	0	56	69.000	4.285	0	0	0	56	0	FOXJ2	intronic	NA
RCC_T3--8	chr12:8201519	T	NA	40	0	40	68.150	5.985	0	0	0	40	0	FOXJ2	intronic	NA
RCC_T3--GL	chr12:8201519	T	NA	34	0	34	68.471	3.404	0	0	0	34	0	FOXJ2	intronic	NA
RCC_T3--1	chr12:8211180	G	NA	30	0	30	67.100	6.743	0	0	0	30	0	C3AR1	UTR3	NA
RCC_T3--2	chr12:8211180	G	T	45	0.022	44	63.591	11.673	1	33.000	0.000	44	1	C3AR1	UTR3	NA
RCC_T3--3	chr12:8211180	G	NA	30	0	30	65.867	5.722	0	0	0	30	0	C3AR1	UTR3	NA
RCC_T3--4	chr12:8211180	G	NA	32	0	32	67.406	4.805	0	0	0	32	0	C3AR1	UTR3	NA
RCC_T3--5	chr12:8211180	G	T	28	0.143	24	67.167	4.733	4	61.750	7.365	24	4	C3AR1	UTR3	NA
RCC_T3--6	chr12:8211180	G	NA	35	0	35	64.714	8.470	0	0	0	35	0	C3AR1	UTR3	NA
RCC_T3--7	chr12:8211180	G	NA	37	0	37	67.892	7.133	0	0	0	37	0	C3AR1	UTR3	NA
RCC_T3--8	chr12:8211180	G	NA	28	0	28	66.536	4.376	0	0	0	28	0	C3AR1	UTR3	NA
RCC_T3--GL	chr12:8211180	G	NA	43	0	43	66.070	6.734	0	0	0	43	0	C3AR1	UTR3	NA
RCC_T3--1	chr12:94534361	C	NA	38	0	38	68.026	3.349	0	0	0	38	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--2	chr12:94534361	C	NA	36	0	36	66.694	7.030	0	0	0	36	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--3	chr12:94534361	C	NA	37	0	37	66.135	6.451	0	0	0	37	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--4	chr12:94534361	C	T	32	0.125	28	67.036	2.442	4	66.250	1.708	28	4	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--5	chr12:94534361	C	NA	40	0	40	64.275	9.889	0	0	0	40	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--6	chr12:94534361	C	NA	46	0	46	68.022	3.396	0	0	0	46	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--7	chr12:94534361	C	NA	39	0	39	66.615	6.471	0	0	0	39	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--8	chr12:94534361	C	NA	43	0	43	66.930	4.295	0	0	0	43	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--GL	chr12:94534361	C	NA	42	0	42	65.976	5.044	0	0	0	42	0	CRADD(dist=289830),PLXNC1(dist=8138)	intergenic	NA
RCC_T3--1	chr12:96387448	C	NA	31	0	31	69.065	3.521	0	0	0	31	0	HAL	intronic	NA
RCC_T3--2	chr12:96387448	C	NA	27	0	27	67.741	5.404	0	0	0	27	0	HAL	intronic	NA
RCC_T3--3	chr12:96387448	C	NA	39	0	39	68.256	4.772	0	0	0	39	0	HAL	intronic	NA
RCC_T3--4	chr12:96387448	C	NA	20	0	20	69.700	2.536	0	0	0	20	0	HAL	intronic	NA
RCC_T3--5	chr12:96387448	C	A	28	0.143	24	67.458	5.250	4	67.750	3.948	24	4	HAL	intronic	NA
RCC_T3--6	chr12:96387448	C	NA	36	0	36	69.417	2.740	0	0	0	36	0	HAL	intronic	NA
RCC_T3--7	chr12:96387448	C	NA	22	0	22	66.864	5.083	0	0	0	22	0	HAL	intronic	NA
RCC_T3--8	chr12:96387448	C	NA	34	0	34	67.412	3.862	0	0	0	34	0	HAL	intronic	NA
RCC_T3--GL	chr12:96387448	C	NA	47	0	47	68.660	3.338	0	0	0	47	0	HAL	intronic	NA
RCC_T3--1	chr12:98711982	A	NA	35	0	35	68.886	4.129	0	0	0	35	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--2	chr12:98711982	A	NA	27	0	27	69.815	2.095	0	0	0	27	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--3	chr12:98711982	A	NA	31	0	31	67.742	6.340	0	0	0	31	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--4	chr12:98711982	A	NA	30	0	30	68.167	2.768	0	0	0	30	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--5	chr12:98711982	A	G	27	0.148	23	68.696	4.353	4	67.000	3.464	23	4	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--6	chr12:98711982	A	NA	30	0	30	69.167	3.270	0	0	0	30	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--7	chr12:98711982	A	NA	43	0	43	70.116	2.994	0	0	0	43	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--8	chr12:98711982	A	NA	27	0	27	68.630	3.152	0	0	0	27	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--GL	chr12:98711982	A	NA	34	0	34	68.529	5.945	0	0	0	34	0	MIR4303(dist=322756),SLC9A7P1(dist=135637)	intergenic	NA
RCC_T3--1	chr12:99188297	C	NA	32	0	32	68.406	3.644	0	0	0	32	0	ANKS1B	intronic	NA
RCC_T3--2	chr12:99188297	C	NA	37	0	37	68.405	3.329	0	0	0	37	0	ANKS1B	intronic	NA
RCC_T3--3	chr12:99188297	C	NA	46	0	46	67.957	3.747	0	0	0	46	0	ANKS1B	intronic	NA
RCC_T3--4	chr12:99188297	C	T	45	0.133	39	64.667	6.301	6	60.167	11.017	39	6	ANKS1B	intronic	NA
RCC_T3--5	chr12:99188297	C	NA	33	0	33	67.394	4.242	0	0	0	33	0	ANKS1B	intronic	NA
RCC_T3--6	chr12:99188297	C	NA	33	0	33	65.636	9.360	0	0	0	33	0	ANKS1B	intronic	NA
RCC_T3--7	chr12:99188297	C	NA	49	0	49	66.122	8.301	0	0	0	49	0	ANKS1B	intronic	NA
RCC_T3--8	chr12:99188297	C	NA	36	0	36	66.722	5.946	0	0	0	36	0	ANKS1B	intronic	NA
RCC_T3--GL	chr12:99188297	C	NA	46	0	46	65.891	5.250	0	0	0	46	0	ANKS1B	intronic	NA
RCC_T3--1	chr13:110859137	A	NA	131	0	130	69.223	3.084	0	0	0	130	0	COL4A1	intronic	NA
RCC_T3--2	chr13:110859137	A	C	163	0.012	161	68.590	4.637	2	70.500	2.121	161	2	COL4A1	intronic	NA
RCC_T3--3	chr13:110859137	A	NA	133	0	133	68.932	3.504	0	0	0	133	0	COL4A1	intronic	NA
RCC_T3--4	chr13:110859137	A	NA	175	0	175	69.154	3.967	0	0	0	175	0	COL4A1	intronic	NA
RCC_T3--5	chr13:110859137	A	C	128	0.039	123	68.886	3.415	5	70.200	4.025	123	5	COL4A1	intronic	NA
RCC_T3--6	chr13:110859137	A	C	135	0.133	117	67.966	5.713	18	68.056	3.077	117	18	COL4A1	intronic	NA
RCC_T3--7	chr13:110859137	A	NA	185	0	185	69.335	3.286	0	0	0	185	0	COL4A1	intronic	NA
RCC_T3--8	chr13:110859137	A	C	142	0.134	123	68.236	5.697	19	69.105	2.536	123	19	COL4A1	intronic	NA
RCC_T3--GL	chr13:110859137	A	NA	206	0	206	68.316	4.844	0	0	0	206	0	COL4A1	intronic	NA
RCC_T3--1	chr13:36940131	C	NA	21	0	21	68.952	3.057	0	0	0	21	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--2	chr13:36940131	C	NA	25	0	25	68.480	3.216	0	0	0	25	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--3	chr13:36940131	C	NA	20	0	20	66.900	7.504	0	0	0	20	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--4	chr13:36940131	C	A	29	0.138	25	68.560	7.671	4	70.000	0.000	25	4	SPG20OS	ncRNA_intronic	NA
RCC_T3--5	chr13:36940131	C	NA	22	0	22	67.227	5.468	0	0	0	22	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--6	chr13:36940131	C	NA	23	0	23	68.957	2.602	0	0	0	23	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--7	chr13:36940131	C	NA	30	0	30	68.667	4.205	0	0	0	30	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--8	chr13:36940131	C	NA	26	0	26	66.269	6.162	0	0	0	26	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--GL	chr13:36940131	C	NA	33	0	33	66.545	7.036	0	0	0	33	0	SPG20OS	ncRNA_intronic	NA
RCC_T3--1	chr1:34035179	G	NA	22	0	22	67.364	8.627	0	0	0	22	0	CSMD2	intronic	NA
RCC_T3--2	chr1:34035179	G	NA	20	0	20	65.150	7.162	0	0	0	20	0	CSMD2	intronic	NA
RCC_T3--3	chr1:34035179	G	NA	25	0	25	68.200	5.066	0	0	0	25	0	CSMD2	intronic	NA
RCC_T3--4	chr1:34035179	G	NA	24	0	24	68.958	2.596	0	0	0	24	0	CSMD2	intronic	NA
RCC_T3--5	chr1:34035179	G	NA	29	0	29	67.103	7.720	0	0	0	29	0	CSMD2	intronic	NA
RCC_T3--6	chr1:34035179	G	NA	23	0	23	67.522	4.294	0	0	0	23	0	CSMD2	intronic	NA
RCC_T3--7	chr1:34035179	G	NA	34	0	34	64.912	9.434	0	0	0	34	0	CSMD2	intronic	NA
RCC_T3--8	chr1:34035179	G	A	15	0.200	12	66.250	6.890	3	70.000	1.000	12	3	CSMD2	intronic	NA
RCC_T3--GL	chr1:34035179	G	NA	36	0	36	64.611	7.220	0	0	0	36	0	CSMD2	intronic	NA
RCC_T3--1	chr13:52684751	T	NA	29	0	29	68.586	3.766	0	0	0	29	0	NEK5	intronic	NA
RCC_T3--2	chr13:52684751	T	NA	34	0	34	67.794	3.073	0	0	0	34	0	NEK5	intronic	NA
RCC_T3--3	chr13:52684751	T	NA	44	0	44	68.568	4.094	0	0	0	44	0	NEK5	intronic	NA
RCC_T3--4	chr13:52684751	T	NA	43	0	43	67.442	5.030	0	0	0	43	0	NEK5	intronic	NA
RCC_T3--5	chr13:52684751	T	NA	26	0	26	63.423	10.132	0	0	0	26	0	NEK5	intronic	NA
RCC_T3--6	chr13:52684751	T	A	22	0.045	21	67.429	4.739	1	62.000	0.000	21	1	NEK5	intronic	NA
RCC_T3--7	chr13:52684751	T	NA	28	0	28	67.929	4.996	0	0	0	28	0	NEK5	intronic	NA
RCC_T3--8	chr13:52684751	T	A	27	0.148	23	67.739	6.804	4	68.750	1.258	23	4	NEK5	intronic	NA
RCC_T3--GL	chr13:52684751	T	NA	34	0	34	68.029	4.071	0	0	0	34	0	NEK5	intronic	NA
RCC_T3--1	chr13:52992037	C	NA	33	0	33	68.636	4.219	0	0	0	33	0	VPS36	intronic	NA
RCC_T3--2	chr13:52992037	C	NA	25	0	25	69.120	3.712	0	0	0	25	0	VPS36	intronic	NA
RCC_T3--3	chr13:52992037	C	NA	37	0	37	69.216	3.038	0	0	0	37	0	VPS36	intronic	NA
RCC_T3--4	chr13:52992037	C	NA	28	0	28	69.571	2.486	0	0	0	28	0	VPS36	intronic	NA
RCC_T3--5	chr13:52992037	C	A	35	0.114	31	67.419	5.661	4	68.500	4.041	31	4	VPS36	intronic	NA
RCC_T3--6	chr13:52992037	C	NA	47	0	47	67.574	5.029	0	0	0	47	0	VPS36	intronic	NA
RCC_T3--7	chr13:52992037	C	NA	49	0	48	68.896	2.962	0	0	0	48	0	VPS36	intronic	NA
RCC_T3--8	chr13:52992037	C	NA	35	0	35	67.514	6.874	0	0	0	35	0	VPS36	intronic	NA
RCC_T3--GL	chr13:52992037	C	NA	45	0	45	66.156	9.018	0	0	0	45	0	VPS36	intronic	NA
RCC_T3--1	chr13:53010353	A	NA	25	0	25	69.200	4.163	0	0	0	25	0	VPS36	intronic	NA
RCC_T3--2	chr13:53010353	A	C	42	0.048	40	69.800	1.964	2	65.000	0.000	40	2	VPS36	intronic	NA
RCC_T3--3	chr13:53010353	A	C	31	0.065	29	68.000	7.131	2	47.500	20.506	29	2	VPS36	intronic	NA
RCC_T3--4	chr13:53010353	A	NA	26	0	25	65.920	9.755	0	0	0	25	0	VPS36	intronic	NA
RCC_T3--5	chr13:53010353	A	NA	18	0	18	68.667	4.715	0	0	0	18	0	VPS36	intronic	NA
RCC_T3--6	chr13:53010353	A	C	26	0.192	21	68.857	4.932	5	64.400	2.510	21	5	VPS36	intronic	NA
RCC_T3--7	chr13:53010353	A	C	33	0.030	31	69.129	3.676	1	65.000	0.000	31	1	VPS36	intronic	NA
RCC_T3--8	chr13:53010353	A	NA	27	0	27	67.296	8.037	0	0	0	27	0	VPS36	intronic	NA
RCC_T3--GL	chr13:53010353	A	NA	37	0	37	68.216	4.967	0	0	0	37	0	VPS36	intronic	NA
RCC_T3--1	chr1:39749962	C	A	83	0.277	60	67.817	5.947	23	68.739	2.927	60	23	MACF1	intronic	NA
RCC_T3--2	chr1:39749962	C	A	130	0.192	105	67.857	4.765	25	68.440	3.015	105	25	MACF1	intronic	NA
RCC_T3--3	chr1:39749962	C	A	154	0.279	111	68.387	3.336	43	67.930	4.228	111	43	MACF1	intronic	NA
RCC_T3--4	chr1:39749962	C	A	144	0.326	96	69.156	2.800	47	68.340	3.095	96	47	MACF1	intronic	NA
RCC_T3--5	chr1:39749962	C	A	119	0.042	114	68.018	3.433	5	67.200	3.114	114	5	MACF1	intronic	NA
RCC_T3--6	chr1:39749962	C	A	117	0.128	102	67.578	5.818	15	67.867	3.482	102	15	MACF1	intronic	NA
RCC_T3--7	chr1:39749962	C	A	143	0.203	114	67.904	5.006	29	66.759	7.079	114	29	MACF1	intronic	NA
RCC_T3--8	chr1:39749962	C	A	150	0.213	118	67.797	5.728	32	67.000	4.826	118	32	MACF1	intronic	NA
RCC_T3--GL	chr1:39749962	C	NA	148	0	148	67.365	4.344	0	0	0	148	0	MACF1	intronic	NA
RCC_T3--1	chr1:39801136	G	C	149	0.208	118	67.432	6.087	31	68.484	2.942	118	31	MACF1	intronic	NA
RCC_T3--2	chr1:39801136	G	C	186	0.280	134	67.306	6.985	52	67.577	6.304	134	52	MACF1	intronic	NA
RCC_T3--3	chr1:39801136	G	C	176	0.216	138	68.167	5.365	38	67.579	3.950	138	38	MACF1	intronic	NA
RCC_T3--4	chr1:39801136	G	C	168	0.256	124	67.798	5.896	43	68.302	5.809	124	43	MACF1	intronic	NA
RCC_T3--5	chr1:39801136	G	C	148	0.061	139	67.144	5.409	9	67.667	3.969	139	9	MACF1	intronic	NA
RCC_T3--6	chr1:39801136	G	C	168	0.131	146	65.911	8.427	22	67.136	3.992	146	22	MACF1	intronic	NA
RCC_T3--7	chr1:39801136	G	C	177	0.237	135	67.800	5.451	42	67.024	5.068	135	42	MACF1	intronic	NA
RCC_T3--8	chr1:39801136	G	C	150	0.200	120	68.175	4.838	30	67.267	7.570	120	30	MACF1	intronic	NA
RCC_T3--GL	chr1:39801136	G	NA	200	0	200	66.195	6.975	0	0	0	200	0	MACF1	intronic	NA
RCC_T3--1	chr14:102515759	T	C	27	0.148	23	69.130	2.546	4	67.000	2.582	23	4	DYNC1H1	intronic	NA
RCC_T3--2	chr14:102515759	T	NA	37	0	37	68.000	3.512	0	0	0	37	0	DYNC1H1	intronic	NA
RCC_T3--3	chr14:102515759	T	NA	37	0	37	65.270	5.389	0	0	0	37	0	DYNC1H1	intronic	NA
RCC_T3--4	chr14:102515759	T	NA	34	0	34	65.853	6.425	0	0	0	34	0	DYNC1H1	intronic	NA
RCC_T3--5	chr14:102515759	T	NA	40	0	40	65.450	6.857	0	0	0	40	0	DYNC1H1	intronic	NA
RCC_T3--6	chr14:102515759	T	NA	25	0	25	66.400	7.292	0	0	0	25	0	DYNC1H1	intronic	NA
RCC_T3--7	chr14:102515759	T	NA	38	0	38	67.211	5.696	0	0	0	38	0	DYNC1H1	intronic	NA
RCC_T3--8	chr14:102515759	T	NA	35	0	35	66.971	7.390	0	0	0	35	0	DYNC1H1	intronic	NA
RCC_T3--GL	chr14:102515759	T	NA	38	0	38	65.921	4.840	0	0	0	38	0	DYNC1H1	intronic	NA
RCC_T3--1	chr14:102918746	T	NA	17	0	17	66.294	6.771	0	0	0	17	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:102918746	T	NA	29	0	29	68.207	4.263	0	0	0	29	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:102918746	T	NA	24	0	24	66.500	4.773	0	0	0	24	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:102918746	T	NA	19	0	19	67.842	2.911	0	0	0	19	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:102918746	T	NA	22	0	22	68.409	2.364	0	0	0	22	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:102918746	T	C	23	0.174	19	67.947	3.205	4	68.250	3.862	19	4	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:102918746	T	NA	13	0	13	66.692	10.419	0	0	0	13	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:102918746	T	NA	12	0	12	65.250	10.454	0	0	0	12	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:102918746	T	NA	33	0	33	64.273	6.898	0	0	0	33	0	TECPR2	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:103566819	G	NA	20	0	20	66.600	4.762	0	0	0	20	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:103566819	G	NA	36	0	36	63.333	9.862	0	0	0	36	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:103566819	G	NA	37	0	37	65.703	4.624	0	0	0	37	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:103566819	G	NA	46	0	46	66.109	4.882	0	0	0	46	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:103566819	G	NA	29	0	29	65.931	6.256	0	0	0	29	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:103566819	G	NA	28	0	28	58.464	12.085	0	0	0	28	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:103566819	G	T	28	0.143	24	63.792	7.667	4	62.000	1.414	24	4	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:103566819	G	NA	33	0	33	63.758	9.104	0	0	0	33	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:103566819	G	NA	45	0	45	64.067	8.173	0	0	0	45	0	EXOC3L4	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:105178790	G	A	34	0.118	30	66.367	4.468	4	63.250	8.808	30	4	INF2	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:105178790	G	NA	49	0	49	67.122	6.051	0	0	0	49	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:105178790	G	NA	56	0	56	65.571	6.801	0	0	0	56	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:105178790	G	NA	64	0	64	66.469	5.685	0	0	0	64	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:105178790	G	NA	52	0	52	66.212	5.139	0	0	0	52	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:105178790	G	NA	57	0	57	64.246	9.877	0	0	0	57	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:105178790	G	NA	49	0	49	67.245	5.006	0	0	0	49	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:105178790	G	NA	54	0	54	64.222	8.973	0	0	0	54	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:105178790	G	NA	50	0	50	65.460	6.695	0	0	0	50	0	INF2	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:41405378	T	A	33	0.121	29	66.793	5.948	4	69.250	2.363	29	4	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--2	chr1:41405378	T	NA	31	0	31	68.161	3.174	0	0	0	31	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--3	chr1:41405378	T	NA	57	0	57	67.561	7.136	0	0	0	57	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--4	chr1:41405378	T	NA	53	0	53	66.642	7.651	0	0	0	53	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--5	chr1:41405378	T	NA	41	0	41	65.537	7.427	0	0	0	41	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--6	chr1:41405378	T	NA	30	0	30	65.333	8.568	0	0	0	30	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--7	chr1:41405378	T	NA	36	0	36	65.917	7.850	0	0	0	36	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--8	chr1:41405378	T	NA	65	0	65	67.015	7.247	0	0	0	65	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--GL	chr1:41405378	T	NA	60	0	60	64.617	8.439	0	0	0	60	0	CITED4(dist=77360),CTPS1(dist=39629)	intergenic	NA
RCC_T3--1	chr14:20873836	G	NA	17	0	17	67.706	6.565	0	0	0	17	0	TEP1	intronic	NA
RCC_T3--2	chr14:20873836	G	NA	29	0	29	67.690	7.112	0	0	0	29	0	TEP1	intronic	NA
RCC_T3--3	chr14:20873836	G	NA	20	0	20	67.050	8.805	0	0	0	20	0	TEP1	intronic	NA
RCC_T3--4	chr14:20873836	G	NA	33	0	33	68.091	7.277	0	0	0	33	0	TEP1	intronic	NA
RCC_T3--5	chr14:20873836	G	A	18	0.167	15	69.800	3.913	3	68.000	0.000	15	3	TEP1	intronic	NA
RCC_T3--6	chr14:20873836	G	NA	17	0	17	67.882	3.672	0	0	0	17	0	TEP1	intronic	NA
RCC_T3--7	chr14:20873836	G	NA	20	0	20	69.200	3.722	0	0	0	20	0	TEP1	intronic	NA
RCC_T3--8	chr14:20873836	G	NA	32	0	32	69.344	3.229	0	0	0	32	0	TEP1	intronic	NA
RCC_T3--GL	chr14:20873836	G	NA	40	0	40	68.000	4.761	0	0	0	40	0	TEP1	intronic	NA
RCC_T3--1	chr14:22386980	A	G	31	0.129	27	68.000	5.540	4	70.000	0.000	27	4	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--2	chr14:22386980	A	NA	28	0	28	66.036	8.800	0	0	0	28	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--3	chr14:22386980	A	NA	53	0	53	68.113	4.742	0	0	0	53	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--4	chr14:22386980	A	NA	47	0	47	69.723	3.034	0	0	0	47	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--5	chr14:22386980	A	NA	18	0	18	67.056	5.297	0	0	0	18	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--6	chr14:22386980	A	NA	46	0	46	65.935	8.580	0	0	0	46	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--7	chr14:22386980	A	NA	38	0	38	67.605	6.512	0	0	0	38	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--8	chr14:22386980	A	NA	32	0	32	68.531	6.682	0	0	0	32	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--GL	chr14:22386980	A	NA	34	0	34	69.765	2.090	0	0	0	34	0	OR4E2(dist=252742),DAD1(dist=646827)	intergenic	NA
RCC_T3--1	chr14:22978291	C	NA	35	0	35	68.629	2.808	0	0	0	35	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--2	chr14:22978291	C	NA	50	0	50	68.820	3.049	0	0	0	50	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--3	chr14:22978291	C	T	40	0.150	34	67.588	4.251	6	67.833	0.408	34	6	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--4	chr14:22978291	C	NA	26	0	26	67.577	4.465	0	0	0	26	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--5	chr14:22978291	C	NA	18	0	18	67.611	3.600	0	0	0	18	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--6	chr14:22978291	C	NA	46	0	46	68.130	4.745	0	0	0	46	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--7	chr14:22978291	C	NA	35	0	35	68.457	3.697	0	0	0	35	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--8	chr14:22978291	C	NA	44	0	44	67.636	4.325	0	0	0	44	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--GL	chr14:22978291	C	NA	43	0	43	68.419	3.762	0	0	0	43	0	OR4E2(dist=844053),DAD1(dist=55516)	intergenic	NA
RCC_T3--1	chr14:23397320	G	NA	58	0	58	67.638	2.864	0	0	0	58	0	PRMT5	intronic	NA
RCC_T3--2	chr14:23397320	G	NA	71	0	71	65.592	5.615	0	0	0	71	0	PRMT5	intronic	NA
RCC_T3--3	chr14:23397320	G	NA	89	0	89	66.079	5.469	0	0	0	89	0	PRMT5	intronic	NA
RCC_T3--4	chr14:23397320	G	NA	78	0	77	66.922	4.460	0	0	0	77	0	PRMT5	intronic	NA
RCC_T3--5	chr14:23397320	G	A	45	0.111	40	66.450	5.787	5	64.400	1.817	40	5	PRMT5	intronic	NA
RCC_T3--6	chr14:23397320	G	NA	63	0	63	65.333	6.520	0	0	0	63	0	PRMT5	intronic	NA
RCC_T3--7	chr14:23397320	G	NA	100	0	100	66.460	5.434	0	0	0	100	0	PRMT5	intronic	NA
RCC_T3--8	chr14:23397320	G	NA	72	0	72	66.514	3.886	0	0	0	72	0	PRMT5	intronic	NA
RCC_T3--GL	chr14:23397320	G	NA	82	0	82	65.012	6.647	0	0	0	82	0	PRMT5	intronic	NA
RCC_T3--1	chr14:23847968	A	C	46	0.022	44	56.568	10.998	1	33.000	0.000	44	1	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:23847968	A	C	37	0.162	31	56.935	14.633	6	36.000	0.000	31	6	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:23847968	A	C	42	0.024	41	61.805	10.008	1	36.000	0.000	41	1	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:23847968	A	NA	38	0	38	56.711	11.957	0	0	0	38	0	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:23847968	A	C	36	0.139	31	53.742	12.434	5	43.800	8.556	31	5	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:23847968	A	C	27	0.074	25	60.320	10.976	2	43.000	0.000	25	2	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:23847968	A	C	36	0.111	32	59.594	10.613	4	39.000	8.124	32	4	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:23847968	A	C	33	0.121	28	53.036	11.877	4	37.750	3.500	28	4	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:23847968	A	NA	58	0	58	57.534	9.825	0	0	0	58	0	CMTM5	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:23869844	G	NA	25	0	25	69.160	3.613	0	0	0	25	0	MYH6	intronic	NA
RCC_T3--2	chr14:23869844	G	NA	30	0	30	68.100	4.037	0	0	0	30	0	MYH6	intronic	NA
RCC_T3--3	chr14:23869844	G	NA	45	0	45	67.600	3.353	0	0	0	45	0	MYH6	intronic	NA
RCC_T3--4	chr14:23869844	G	NA	38	0	38	66.605	6.954	0	0	0	38	0	MYH6	intronic	NA
RCC_T3--5	chr14:23869844	G	NA	27	0	27	67.852	3.505	0	0	0	27	0	MYH6	intronic	NA
RCC_T3--6	chr14:23869844	G	A	26	0.154	22	66.000	5.690	4	55.000	15.033	22	4	MYH6	intronic	NA
RCC_T3--7	chr14:23869844	G	NA	24	0	24	68.417	5.250	0	0	0	24	0	MYH6	intronic	NA
RCC_T3--8	chr14:23869844	G	NA	33	0	33	68.212	3.998	0	0	0	33	0	MYH6	intronic	NA
RCC_T3--GL	chr14:23869844	G	NA	40	0	39	66.487	7.258	0	0	0	39	0	MYH6	intronic	NA
RCC_T3--1	chr14:24589083	G	NA	16	0	16	67.938	4.597	0	0	0	16	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:24589083	G	NA	21	0	21	63.952	8.405	0	0	0	21	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:24589083	G	NA	20	0	20	63.400	8.858	0	0	0	20	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:24589083	G	NA	32	0	32	65.281	9.095	0	0	0	32	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:24589083	G	NA	21	0	21	66.762	3.700	0	0	0	21	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:24589083	G	NA	27	0	27	64.704	7.554	0	0	0	27	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:24589083	G	NA	26	0	26	66.154	4.324	0	0	0	26	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:24589083	G	A	17	0.176	14	64.286	6.402	3	65.333	3.512	14	3	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:24589083	G	NA	39	0	39	66.949	6.428	0	0	0	39	0	DCAF11	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:42628623	G	A	29	0.138	25	62.760	9.684	4	62.500	5.686	25	4	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:42628623	G	NA	54	0	53	65.509	8.194	0	0	0	53	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:42628623	G	NA	52	0	52	66.942	6.436	0	0	0	52	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:42628623	G	NA	31	0	31	67.484	4.878	0	0	0	31	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:42628623	G	NA	71	0	71	65.493	7.372	0	0	0	71	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:42628623	G	NA	43	0	43	64.233	8.176	0	0	0	43	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:42628623	G	NA	53	0	53	64.208	8.042	0	0	0	53	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:42628623	G	NA	40	0	40	66.075	8.235	0	0	0	40	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:42628623	G	NA	60	0	60	62.767	9.591	0	0	0	60	0	GUCA2A	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:43825023	C	NA	28	0	28	63.393	9.114	0	0	0	28	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:43825023	C	NA	44	0	44	64.841	6.820	0	0	0	44	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:43825023	C	NA	56	0	56	65.804	4.425	0	0	0	56	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:43825023	C	A	44	0.136	38	64.421	9.742	6	58.667	12.832	38	6	CDC20	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:43825023	C	NA	30	0	30	59.400	11.440	0	0	0	30	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:43825023	C	NA	40	0	40	64.150	6.852	0	0	0	40	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:43825023	C	NA	72	0	72	64.542	7.232	0	0	0	72	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:43825023	C	NA	48	0	48	64.812	6.242	0	0	0	48	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:43825023	C	NA	47	0	47	63.553	7.956	0	0	0	47	0	CDC20	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:50190677	T	NA	32	0	32	69.375	2.366	0	0	0	32	0	KLHDC1	intronic	NA
RCC_T3--2	chr14:50190677	T	NA	15	0	15	68.533	3.852	0	0	0	15	0	KLHDC1	intronic	NA
RCC_T3--3	chr14:50190677	T	NA	41	0	41	69.000	3.391	0	0	0	41	0	KLHDC1	intronic	NA
RCC_T3--4	chr14:50190677	T	NA	22	0	22	68.864	3.427	0	0	0	22	0	KLHDC1	intronic	NA
RCC_T3--5	chr14:50190677	T	NA	33	0	33	67.576	4.880	0	0	0	33	0	KLHDC1	intronic	NA
RCC_T3--6	chr14:50190677	T	NA	21	0	21	68.286	5.806	0	0	0	21	0	KLHDC1	intronic	NA
RCC_T3--7	chr14:50190677	T	NA	37	0	37	68.027	5.669	0	0	0	37	0	KLHDC1	intronic	NA
RCC_T3--8	chr14:50190677	T	A	25	0.160	21	68.286	3.538	4	69.000	3.559	21	4	KLHDC1	intronic	NA
RCC_T3--GL	chr14:50190677	T	NA	33	0	33	68.152	7.467	0	0	0	33	0	KLHDC1	intronic	NA
RCC_T3--1	chr14:50299065	T	G	28	0.036	26	67.577	3.190	1	65.000	0.000	26	1	NEMF	intronic	NA
RCC_T3--2	chr14:50299065	T	G	43	0.023	41	68.683	2.979	1	62.000	0.000	41	1	NEMF	intronic	NA
RCC_T3--3	chr14:50299065	T	G	29	0.138	25	67.960	3.089	4	64.250	1.500	25	4	NEMF	intronic	NA
RCC_T3--4	chr14:50299065	T	G	27	0.111	23	69.000	2.523	3	63.000	1.732	23	3	NEMF	intronic	NA
RCC_T3--5	chr14:50299065	T	G	34	0.059	32	68.625	2.685	2	65.000	0.000	32	2	NEMF	intronic	NA
RCC_T3--6	chr14:50299065	T	NA	18	0	17	65.941	4.451	0	0	0	17	0	NEMF	intronic	NA
RCC_T3--7	chr14:50299065	T	G	37	0.162	31	67.548	2.656	6	62.833	2.787	31	6	NEMF	intronic	NA
RCC_T3--8	chr14:50299065	T	G	44	0.045	42	68.738	2.576	2	63.500	2.121	42	2	NEMF	intronic	NA
RCC_T3--GL	chr14:50299065	T	NA	44	0	44	68.455	3.579	0	0	0	44	0	NEMF	intronic	NA
RCC_T3--1	chr14:51492135	C	T	19	0.105	17	64.529	9.837	2	64.000	2.828	17	2	TRIM9	intronic	NA
RCC_T3--2	chr14:51492135	C	T	33	0.152	28	65.643	7.612	5	63.400	2.608	28	5	TRIM9	intronic	NA
RCC_T3--3	chr14:51492135	C	NA	34	0	34	67.029	3.950	0	0	0	34	0	TRIM9	intronic	NA
RCC_T3--4	chr14:51492135	C	NA	34	0	34	68.324	3.582	0	0	0	34	0	TRIM9	intronic	NA
RCC_T3--5	chr14:51492135	C	NA	39	0	39	66.256	6.715	0	0	0	39	0	TRIM9	intronic	NA
RCC_T3--6	chr14:51492135	C	T	43	0.047	41	66.634	6.949	2	57.500	2.121	41	2	TRIM9	intronic	NA
RCC_T3--7	chr14:51492135	C	NA	33	0	33	66.848	7.155	0	0	0	33	0	TRIM9	intronic	NA
RCC_T3--8	chr14:51492135	C	NA	42	0	41	65.415	7.197	0	0	0	41	0	TRIM9	intronic	NA
RCC_T3--GL	chr14:51492135	C	NA	43	0	43	65.256	6.680	0	0	0	43	0	TRIM9	intronic	NA
RCC_T3--1	chr1:45292397	C	NA	35	0	35	66.657	4.137	0	0	0	35	0	PTCH2	exonic	synonymous_SNV
RCC_T3--2	chr1:45292397	C	NA	35	0	35	64.829	8.604	0	0	0	35	0	PTCH2	exonic	synonymous_SNV
RCC_T3--3	chr1:45292397	C	NA	44	0	43	65.628	6.722	0	0	0	43	0	PTCH2	exonic	synonymous_SNV
RCC_T3--4	chr1:45292397	C	NA	46	0	46	67.761	4.056	0	0	0	46	0	PTCH2	exonic	synonymous_SNV
RCC_T3--5	chr1:45292397	C	A	21	0.190	17	66.647	4.690	4	63.250	2.630	17	4	PTCH2	exonic	synonymous_SNV
RCC_T3--6	chr1:45292397	C	NA	31	0	31	66.548	4.493	0	0	0	31	0	PTCH2	exonic	synonymous_SNV
RCC_T3--7	chr1:45292397	C	NA	38	0	38	67.684	3.504	0	0	0	38	0	PTCH2	exonic	synonymous_SNV
RCC_T3--8	chr1:45292397	C	NA	39	0	39	66.513	7.701	0	0	0	39	0	PTCH2	exonic	synonymous_SNV
RCC_T3--GL	chr1:45292397	C	NA	34	0	34	65.294	4.583	0	0	0	34	0	PTCH2	exonic	synonymous_SNV
RCC_T3--1	chr14:58814688	G	NA	29	0	29	67.724	4.765	0	0	0	29	0	ARID4A	intronic	NA
RCC_T3--2	chr14:58814688	G	NA	30	0	30	67.467	4.066	0	0	0	30	0	ARID4A	intronic	NA
RCC_T3--3	chr14:58814688	G	NA	26	0	26	68.115	3.479	0	0	0	26	0	ARID4A	intronic	NA
RCC_T3--4	chr14:58814688	G	NA	38	0	38	67.553	6.733	0	0	0	38	0	ARID4A	intronic	NA
RCC_T3--5	chr14:58814688	G	A	18	0.167	15	68.667	3.244	3	68.000	0.000	15	3	ARID4A	intronic	NA
RCC_T3--6	chr14:58814688	G	NA	32	0	32	67.375	4.858	0	0	0	32	0	ARID4A	intronic	NA
RCC_T3--7	chr14:58814688	G	NA	41	0	41	65.537	8.829	0	0	0	41	0	ARID4A	intronic	NA
RCC_T3--8	chr14:58814688	G	NA	33	0	33	68.727	3.476	0	0	0	33	0	ARID4A	intronic	NA
RCC_T3--GL	chr14:58814688	G	NA	38	0	38	65.053	9.100	0	0	0	38	0	ARID4A	intronic	NA
RCC_T3--1	chr1:46471986	C	NA	143	0	143	68.161	4.067	0	0	0	143	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:46471986	C	NA	157	0	157	67.229	6.404	0	0	0	157	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:46471986	C	NA	201	0	201	67.493	5.166	0	0	0	201	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:46471986	C	NA	204	0	204	67.069	6.805	0	0	0	204	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:46471986	C	NA	158	0	158	65.538	8.085	0	0	0	158	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:46471986	C	T	152	0.007	150	67.313	6.297	1	38.000	0.000	150	1	MAST2	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:46471986	C	T	179	0.257	133	66.564	6.792	46	68.543	3.430	133	46	MAST2	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:46471986	C	NA	155	0	155	67.619	4.955	0	0	0	155	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:46471986	C	NA	222	0	222	65.198	7.287	0	0	0	222	0	MAST2	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:69351076	C	T	53	0.151	45	67.822	3.898	8	67.125	4.390	45	8	ACTN1	intronic	NA
RCC_T3--2	chr14:69351076	C	NA	55	0	55	67.527	7.537	0	0	0	55	0	ACTN1	intronic	NA
RCC_T3--3	chr14:69351076	C	NA	48	0	48	68.125	4.098	0	0	0	48	0	ACTN1	intronic	NA
RCC_T3--4	chr14:69351076	C	NA	53	0	52	66.058	7.630	0	0	0	52	0	ACTN1	intronic	NA
RCC_T3--5	chr14:69351076	C	NA	50	0	50	64.860	9.232	0	0	0	50	0	ACTN1	intronic	NA
RCC_T3--6	chr14:69351076	C	NA	53	0	53	64.208	10.186	0	0	0	53	0	ACTN1	intronic	NA
RCC_T3--7	chr14:69351076	C	NA	60	0	60	67.200	7.163	0	0	0	60	0	ACTN1	intronic	NA
RCC_T3--8	chr14:69351076	C	NA	43	0	43	67.070	5.696	0	0	0	43	0	ACTN1	intronic	NA
RCC_T3--GL	chr14:69351076	C	NA	51	0	51	65.490	7.237	0	0	0	51	0	ACTN1	intronic	NA
RCC_T3--1	chr14:74205354	C	NA	21	0	21	64.381	4.695	0	0	0	21	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:74205354	C	A	52	0.115	46	64.109	7.648	6	53.500	16.009	46	6	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:74205354	C	NA	51	0	51	66.941	4.164	0	0	0	51	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:74205354	C	NA	27	0	27	63.889	6.542	0	0	0	27	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:74205354	C	NA	49	0	49	63.041	8.556	0	0	0	49	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:74205354	C	NA	22	0	22	64.045	5.827	0	0	0	22	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:74205354	C	NA	51	0	51	64.706	5.880	0	0	0	51	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:74205354	C	NA	47	0	47	65.617	5.253	0	0	0	47	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:74205354	C	NA	55	0	55	65.164	4.077	0	0	0	55	0	ELMSAN1	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:74206031	C	NA	29	0	29	64.000	7.695	0	0	0	29	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--2	chr14:74206031	C	NA	38	0	38	63.500	7.696	0	0	0	38	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--3	chr14:74206031	C	NA	33	0	33	63.606	7.996	0	0	0	33	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--4	chr14:74206031	C	NA	48	0	48	65.312	6.827	0	0	0	48	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--5	chr14:74206031	C	NA	37	0	37	65.676	4.035	0	0	0	37	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--6	chr14:74206031	C	T	34	0.206	26	63.692	7.964	7	60.000	7.703	26	7	ELMSAN1	exonic	synonymous_SNV
RCC_T3--7	chr14:74206031	C	NA	39	0	39	64.256	6.695	0	0	0	39	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--8	chr14:74206031	C	NA	33	0	33	63.909	8.575	0	0	0	33	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--GL	chr14:74206031	C	NA	54	0	54	63.130	9.548	0	0	0	54	0	ELMSAN1	exonic	synonymous_SNV
RCC_T3--1	chr14:74726467	T	C	33	0.121	29	64.345	11.261	4	60.000	9.522	29	4	VSX2	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:74726467	T	NA	32	0	32	64.844	8.239	0	0	0	32	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:74726467	T	NA	39	0	39	65.000	6.751	0	0	0	39	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:74726467	T	NA	36	0	35	66.543	4.252	0	0	0	35	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:74726467	T	NA	38	0	38	64.974	8.809	0	0	0	38	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:74726467	T	NA	33	0	33	64.939	7.306	0	0	0	33	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:74726467	T	NA	49	0	48	66.688	4.357	0	0	0	48	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:74726467	T	NA	55	0	55	64.709	6.285	0	0	0	55	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:74726467	T	NA	44	0	44	65.432	5.744	0	0	0	44	0	VSX2	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:74762969	T	C	36	0.111	32	64.219	8.882	4	68.500	2.887	32	4	ABCD4	intronic	NA
RCC_T3--2	chr14:74762969	T	NA	46	0	46	66.848	4.371	0	0	0	46	0	ABCD4	intronic	NA
RCC_T3--3	chr14:74762969	T	NA	54	0	54	66.000	6.457	0	0	0	54	0	ABCD4	intronic	NA
RCC_T3--4	chr14:74762969	T	NA	46	0	46	67.130	4.380	0	0	0	46	0	ABCD4	intronic	NA
RCC_T3--5	chr14:74762969	T	NA	40	0	40	66.850	4.130	0	0	0	40	0	ABCD4	intronic	NA
RCC_T3--6	chr14:74762969	T	NA	51	0	51	67.216	4.451	0	0	0	51	0	ABCD4	intronic	NA
RCC_T3--7	chr14:74762969	T	NA	45	0	45	64.622	7.287	0	0	0	45	0	ABCD4	intronic	NA
RCC_T3--8	chr14:74762969	T	NA	52	0	52	67.231	5.238	0	0	0	52	0	ABCD4	intronic	NA
RCC_T3--GL	chr14:74762969	T	NA	63	0	63	66.603	5.915	0	0	0	63	0	ABCD4	intronic	NA
RCC_T3--1	chr14:77493101	C	NA	11	0	11	68.455	4.677	0	0	0	11	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:77493101	C	NA	37	0	37	65.135	8.677	0	0	0	37	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:77493101	C	NA	41	0	41	65.390	6.760	0	0	0	41	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:77493101	C	NA	26	0	26	64.846	7.656	0	0	0	26	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:77493101	C	NA	26	0	26	64.538	9.876	0	0	0	26	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:77493101	C	NA	26	0	26	61.962	11.701	0	0	0	26	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:77493101	C	A	29	0.138	25	65.760	7.774	4	66.250	0.500	25	4	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:77493101	C	NA	34	0	34	64.500	8.396	0	0	0	34	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:77493101	C	NA	37	0	37	62.784	11.076	0	0	0	37	0	IRF2BPL	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:89757474	C	NA	39	0	39	66.923	5.264	0	0	0	39	0	FOXN3	intronic	NA
RCC_T3--2	chr14:89757474	C	NA	35	0	35	66.486	6.303	0	0	0	35	0	FOXN3	intronic	NA
RCC_T3--3	chr14:89757474	C	NA	45	0	45	66.489	6.258	0	0	0	45	0	FOXN3	intronic	NA
RCC_T3--4	chr14:89757474	C	NA	43	0	43	67.395	4.343	0	0	0	43	0	FOXN3	intronic	NA
RCC_T3--5	chr14:89757474	C	T	54	0.148	46	64.652	9.407	8	67.625	5.780	46	8	FOXN3	intronic	NA
RCC_T3--6	chr14:89757474	C	NA	38	0	38	67.026	7.015	0	0	0	38	0	FOXN3	intronic	NA
RCC_T3--7	chr14:89757474	C	NA	53	0	53	66.434	4.526	0	0	0	53	0	FOXN3	intronic	NA
RCC_T3--8	chr14:89757474	C	NA	54	0	54	67.944	3.147	0	0	0	54	0	FOXN3	intronic	NA
RCC_T3--GL	chr14:89757474	C	NA	43	0	43	66.535	7.510	0	0	0	43	0	FOXN3	intronic	NA
RCC_T3--1	chr14:93172997	G	NA	18	0	18	65.611	5.812	0	0	0	18	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:93172997	G	NA	35	0	35	67.029	3.285	0	0	0	35	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:93172997	G	NA	35	0	35	64.571	5.265	0	0	0	35	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:93172997	G	NA	22	0	22	65.864	6.372	0	0	0	22	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:93172997	G	A	33	0.121	29	64.621	7.168	4	64.750	1.893	29	4	LGMN	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:93172997	G	NA	33	0	33	66.091	6.687	0	0	0	33	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:93172997	G	NA	21	0	21	65.048	4.620	0	0	0	21	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:93172997	G	NA	42	0	42	66.524	5.474	0	0	0	42	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:93172997	G	NA	46	0	46	64.587	7.506	0	0	0	46	0	LGMN	exonic	nonsynonymous_SNV
RCC_T3--1	chr14:93286100	G	T	116	0.250	87	68.931	3.857	29	67.862	5.829	87	29	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--2	chr14:93286100	G	T	140	0.236	107	68.084	4.743	33	67.455	7.575	107	33	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--3	chr14:93286100	G	T	143	0.238	109	68.798	4.303	34	68.118	4.604	109	34	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--4	chr14:93286100	G	T	159	0.195	128	68.516	5.440	31	67.935	5.297	128	31	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--5	chr14:93286100	G	T	139	0.029	135	67.437	6.272	4	67.000	6.218	135	4	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--6	chr14:93286100	G	T	196	0.092	178	67.427	5.466	18	67.500	2.854	178	18	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--7	chr14:93286100	G	T	138	0.159	116	67.716	7.034	22	68.091	6.934	116	22	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--8	chr14:93286100	G	T	148	0.216	116	68.224	5.431	32	68.000	6.431	116	32	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr14:93286100	G	NA	171	0	170	66.229	6.916	0	0	0	170	0	GOLGA5	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:23688956	C	NA	33	0	33	66.606	6.354	0	0	0	33	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--2	chr15:23688956	C	T	51	0.118	45	67.511	4.357	6	64.000	6.066	45	6	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--3	chr15:23688956	C	NA	62	0	62	66.065	5.204	0	0	0	62	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--4	chr15:23688956	C	NA	36	0	36	65.806	9.310	0	0	0	36	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--5	chr15:23688956	C	NA	75	0	75	63.827	8.812	0	0	0	75	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--6	chr15:23688956	C	NA	39	0	39	65.128	7.381	0	0	0	39	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--7	chr15:23688956	C	NA	59	0	59	66.576	5.975	0	0	0	59	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--8	chr15:23688956	C	NA	58	0	58	68.310	3.500	0	0	0	58	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--GL	chr15:23688956	C	NA	53	0	53	66.226	6.704	0	0	0	53	0	GOLGA8S(dist=75485),MIR4508(dist=118253)	intergenic	NA
RCC_T3--1	chr15:28234698	C	NA	25	0	25	67.160	5.121	0	0	0	25	0	OCA2	intronic	NA
RCC_T3--2	chr15:28234698	C	NA	18	0	18	65.333	7.677	0	0	0	18	0	OCA2	intronic	NA
RCC_T3--3	chr15:28234698	C	NA	22	0	22	69.227	2.793	0	0	0	22	0	OCA2	intronic	NA
RCC_T3--4	chr15:28234698	C	NA	26	0	26	67.962	3.965	0	0	0	26	0	OCA2	intronic	NA
RCC_T3--5	chr15:28234698	C	NA	36	0	36	63.694	6.811	0	0	0	36	0	OCA2	intronic	NA
RCC_T3--6	chr15:28234698	C	NA	28	0	28	63.143	11.329	0	0	0	28	0	OCA2	intronic	NA
RCC_T3--7	chr15:28234698	C	NA	35	0	35	66.314	8.731	0	0	0	35	0	OCA2	intronic	NA
RCC_T3--8	chr15:28234698	C	T	36	0.111	32	64.312	8.445	4	66.000	4.320	32	4	OCA2	intronic	NA
RCC_T3--GL	chr15:28234698	C	NA	33	0	33	66.818	3.283	0	0	0	33	0	OCA2	intronic	NA
RCC_T3--1	chr15:28518151	C	NA	22	0	22	68.045	3.658	0	0	0	22	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--2	chr15:28518151	C	NA	25	0	25	68.000	8.139	0	0	0	25	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--3	chr15:28518151	C	NA	43	0	43	67.628	6.306	0	0	0	43	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--4	chr15:28518151	C	NA	39	0	39	67.974	3.175	0	0	0	39	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--5	chr15:28518151	C	NA	33	0	33	67.273	4.281	0	0	0	33	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--6	chr15:28518151	C	A	29	0.138	25	68.760	3.126	4	69.500	3.000	25	4	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--7	chr15:28518151	C	NA	44	0	44	67.773	5.171	0	0	0	44	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--8	chr15:28518151	C	NA	43	0	43	67.721	6.307	0	0	0	43	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--GL	chr15:28518151	C	NA	44	0	44	65.545	8.525	0	0	0	44	0	HERC2(NM_004667:exon9:c.801-1G>T)	splicing	NA
RCC_T3--1	chr15:35834521	T	A	52	0.173	43	70.395	2.665	9	68.667	1.732	43	9	DPH6	intronic	NA
RCC_T3--2	chr15:35834521	T	A	72	0.167	60	69.450	3.938	12	68.250	4.070	60	12	DPH6	intronic	NA
RCC_T3--3	chr15:35834521	T	A	57	0.246	43	69.163	3.565	14	67.643	5.759	43	14	DPH6	intronic	NA
RCC_T3--4	chr15:35834521	T	A	62	0.210	49	69.571	4.528	13	69.769	3.855	49	13	DPH6	intronic	NA
RCC_T3--5	chr15:35834521	T	A	45	0.067	42	69.548	5.474	3	68.000	3.000	42	3	DPH6	intronic	NA
RCC_T3--6	chr15:35834521	T	A	65	0.138	56	68.821	3.358	9	69.444	1.810	56	9	DPH6	intronic	NA
RCC_T3--7	chr15:35834521	T	A	67	0.284	48	69.333	3.599	19	68.895	3.650	48	19	DPH6	intronic	NA
RCC_T3--8	chr15:35834521	T	A	58	0.379	36	69.222	5.254	22	68.409	5.612	36	22	DPH6	intronic	NA
RCC_T3--GL	chr15:35834521	T	NA	76	0	76	67.987	3.931	0	0	0	76	0	DPH6	intronic	NA
RCC_T3--1	chr15:40846354	C	NA	61	0	61	66.852	6.292	0	0	0	61	0	C15orf57	intronic	NA
RCC_T3--2	chr15:40846354	C	NA	68	0	68	68.324	5.634	0	0	0	68	0	C15orf57	intronic	NA
RCC_T3--3	chr15:40846354	C	NA	63	0	63	66.365	6.945	0	0	0	63	0	C15orf57	intronic	NA
RCC_T3--4	chr15:40846354	C	A	76	0.105	68	67.250	6.632	8	67.625	4.207	68	8	C15orf57	intronic	NA
RCC_T3--5	chr15:40846354	C	NA	63	0	63	66.492	7.137	0	0	0	63	0	C15orf57	intronic	NA
RCC_T3--6	chr15:40846354	C	NA	65	0	65	64.723	9.229	0	0	0	65	0	C15orf57	intronic	NA
RCC_T3--7	chr15:40846354	C	NA	72	0	72	66.875	6.595	0	0	0	72	0	C15orf57	intronic	NA
RCC_T3--8	chr15:40846354	C	NA	84	0	84	67.167	7.342	0	0	0	84	0	C15orf57	intronic	NA
RCC_T3--GL	chr15:40846354	C	NA	80	0	80	65.450	8.605	0	0	0	80	0	C15orf57	intronic	NA
RCC_T3--1	chr15:41228465	G	NA	23	0	23	66.913	4.067	0	0	0	23	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:41228465	G	NA	30	0	30	66.100	4.310	0	0	0	30	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:41228465	G	NA	28	0	28	64.964	7.820	0	0	0	28	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:41228465	G	A	32	0.188	26	63.923	7.756	6	56.000	9.209	26	6	DLL4	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:41228465	G	NA	20	0	20	63.450	8.370	0	0	0	20	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:41228465	G	NA	26	0	26	64.346	8.025	0	0	0	26	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:41228465	G	NA	22	0	22	64.864	4.853	0	0	0	22	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:41228465	G	NA	18	0	18	67.222	2.579	0	0	0	18	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:41228465	G	NA	33	0	33	65.788	5.134	0	0	0	33	0	DLL4	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:42175322	A	NA	29	0	28	64.393	11.736	0	0	0	28	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--2	chr15:42175322	A	NA	46	0	45	64.467	9.621	0	0	0	45	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--3	chr15:42175322	A	G	34	0.118	30	66.067	7.085	4	63.750	6.702	30	4	SPTBN5	exonic	synonymous_SNV
RCC_T3--4	chr15:42175322	A	NA	47	0	46	64.000	10.038	0	0	0	46	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--5	chr15:42175322	A	NA	34	0	34	65.147	7.378	0	0	0	34	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--6	chr15:42175322	A	NA	29	0	29	63.276	9.606	0	0	0	29	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--7	chr15:42175322	A	NA	35	0	35	64.486	10.675	0	0	0	35	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--8	chr15:42175322	A	NA	24	0	24	64.583	10.219	0	0	0	24	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--GL	chr15:42175322	A	NA	51	0	51	65.235	7.667	0	0	0	51	0	SPTBN5	exonic	synonymous_SNV
RCC_T3--1	chr15:42193321	T	NA	62	0	62	68.210	5.651	0	0	0	62	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:42193321	T	NA	71	0	71	66.704	6.260	0	0	0	71	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:42193321	T	NA	61	0	60	66.567	6.411	0	0	0	60	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:42193321	T	NA	70	0	70	65.986	6.189	0	0	0	70	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:42193321	T	NA	70	0	70	66.500	5.823	0	0	0	70	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:42193321	T	NA	71	0	71	66.366	6.931	0	0	0	71	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:42193321	T	NA	73	0	72	66.083	6.705	0	0	0	72	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:42193321	T	A	55	0.109	49	65.286	9.142	6	61.667	6.055	49	6	EHD4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:42193321	T	NA	47	0	47	66.319	4.640	0	0	0	47	0	EHD4	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:43461959	T	NA	31	0	31	67.452	4.146	0	0	0	31	0	TMEM62	intronic	NA
RCC_T3--2	chr15:43461959	T	NA	33	0	33	67.939	4.795	0	0	0	33	0	TMEM62	intronic	NA
RCC_T3--3	chr15:43461959	T	NA	35	0	35	68.257	4.203	0	0	0	35	0	TMEM62	intronic	NA
RCC_T3--4	chr15:43461959	T	NA	24	0	24	68.500	3.575	0	0	0	24	0	TMEM62	intronic	NA
RCC_T3--5	chr15:43461959	T	NA	31	0	31	68.581	5.038	0	0	0	31	0	TMEM62	intronic	NA
RCC_T3--6	chr15:43461959	T	A	29	0.138	25	67.960	4.739	4	63.250	2.062	25	4	TMEM62	intronic	NA
RCC_T3--7	chr15:43461959	T	NA	23	0	23	67.652	3.868	0	0	0	23	0	TMEM62	intronic	NA
RCC_T3--8	chr15:43461959	T	NA	32	0	32	66.906	7.506	0	0	0	32	0	TMEM62	intronic	NA
RCC_T3--GL	chr15:43461959	T	NA	37	0	37	66.405	7.335	0	0	0	37	0	TMEM62	intronic	NA
RCC_T3--1	chr15:49447659	C	NA	22	0	22	59.364	12.113	0	0	0	22	0	COPS2	intronic	NA
RCC_T3--2	chr15:49447659	C	NA	30	0	30	63.867	7.123	0	0	0	30	0	COPS2	intronic	NA
RCC_T3--3	chr15:49447659	C	NA	29	0	29	62.690	7.011	0	0	0	29	0	COPS2	intronic	NA
RCC_T3--4	chr15:49447659	C	NA	42	0	42	62.405	9.205	0	0	0	42	0	COPS2	intronic	NA
RCC_T3--5	chr15:49447659	C	NA	30	0	30	59.500	11.503	0	0	0	30	0	COPS2	intronic	NA
RCC_T3--6	chr15:49447659	C	NA	24	0	24	61.208	9.758	0	0	0	24	0	COPS2	intronic	NA
RCC_T3--7	chr15:49447659	C	NA	25	0	25	62.200	8.505	0	0	0	25	0	COPS2	intronic	NA
RCC_T3--8	chr15:49447659	C	T	33	0.121	29	60.931	9.573	4	63.000	7.616	29	4	COPS2	intronic	NA
RCC_T3--GL	chr15:49447659	C	NA	38	0	38	61.868	6.858	0	0	0	38	0	COPS2	intronic	NA
RCC_T3--1	chr15:65113162	C	NA	39	0	39	64.615	8.990	0	0	0	39	0	PIF1	intronic	NA
RCC_T3--2	chr15:65113162	C	NA	47	0	47	64.723	9.577	0	0	0	47	0	PIF1	intronic	NA
RCC_T3--3	chr15:65113162	C	NA	35	0	35	65.286	8.498	0	0	0	35	0	PIF1	intronic	NA
RCC_T3--4	chr15:65113162	C	A	33	0.121	29	67.586	4.179	4	57.000	17.833	29	4	PIF1	intronic	NA
RCC_T3--5	chr15:65113162	C	NA	45	0	45	64.778	6.745	0	0	0	45	0	PIF1	intronic	NA
RCC_T3--6	chr15:65113162	C	NA	55	0	55	65.673	7.511	0	0	0	55	0	PIF1	intronic	NA
RCC_T3--7	chr15:65113162	C	NA	45	0	45	64.222	9.988	0	0	0	45	0	PIF1	intronic	NA
RCC_T3--8	chr15:65113162	C	NA	47	0	47	67.000	6.653	0	0	0	47	0	PIF1	intronic	NA
RCC_T3--GL	chr15:65113162	C	NA	64	0	64	64.203	8.745	0	0	0	64	0	PIF1	intronic	NA
RCC_T3--1	chr15:65239726	T	G	25	0.240	19	65.105	6.523	6	37.167	6.585	19	6	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:65239726	T	NA	29	0	29	66.448	7.462	0	0	0	29	0	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:65239726	T	G	38	0.079	35	62.714	11.310	3	34.333	2.309	35	3	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:65239726	T	G	35	0.057	33	63.818	9.665	2	35.000	2.828	33	2	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:65239726	T	G	33	0.061	31	63.710	9.151	2	33.000	0.000	31	2	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:65239726	T	G	36	0.028	35	63.800	9.815	1	33.000	0.000	35	1	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:65239726	T	G	35	0.057	32	63.500	9.864	2	38.500	0.707	32	2	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:65239726	T	G	36	0.056	32	65.375	8.280	2	35.000	2.828	32	2	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:65239726	T	NA	37	0	37	61.595	10.905	0	0	0	37	0	ANKDD1A	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:65681673	C	NA	38	0	38	63.526	11.705	0	0	0	38	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:65681673	C	NA	47	0	47	64.468	9.461	0	0	0	47	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:65681673	C	NA	27	0	27	65.852	5.447	0	0	0	27	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:65681673	C	NA	57	0	57	66.000	6.080	0	0	0	57	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:65681673	C	A	44	0.136	38	64.763	6.284	6	56.000	11.679	38	6	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:65681673	C	NA	36	0	36	64.750	8.689	0	0	0	36	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:65681673	C	NA	46	0	46	61.413	10.576	0	0	0	46	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:65681673	C	NA	27	0	27	63.963	6.630	0	0	0	27	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:65681673	C	NA	40	0	40	63.775	9.601	0	0	0	40	0	IGDCC4	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:69315316	G	T	41	0.146	35	69.200	2.720	6	65.333	8.501	35	6	MIR548H4	ncRNA_intronic	NA
RCC_T3--2	chr15:69315316	G	NA	34	0	34	67.118	6.390	0	0	0	34	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--3	chr15:69315316	G	NA	59	0	59	66.153	8.626	0	0	0	59	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--4	chr15:69315316	G	NA	38	0	38	68.395	2.927	0	0	0	38	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--5	chr15:69315316	G	NA	38	0	38	67.132	6.799	0	0	0	38	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--6	chr15:69315316	G	NA	37	0	37	66.243	8.371	0	0	0	37	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--7	chr15:69315316	G	NA	50	0	50	68.920	3.469	0	0	0	50	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--8	chr15:69315316	G	NA	27	0	27	68.000	3.419	0	0	0	27	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--GL	chr15:69315316	G	NA	54	0	54	66.630	5.029	0	0	0	54	0	MIR548H4	ncRNA_intronic	NA
RCC_T3--1	chr15:73022157	A	NA	20	0	19	69.737	2.960	0	0	0	19	0	BBS4	intronic	NA
RCC_T3--2	chr15:73022157	A	NA	31	0	31	67.065	4.973	0	0	0	31	0	BBS4	intronic	NA
RCC_T3--3	chr15:73022157	A	G	18	0.167	15	66.867	6.643	3	61.000	11.269	15	3	BBS4	intronic	NA
RCC_T3--4	chr15:73022157	A	NA	30	0	30	68.333	7.590	0	0	0	30	0	BBS4	intronic	NA
RCC_T3--5	chr15:73022157	A	NA	19	0	19	67.421	7.820	0	0	0	19	0	BBS4	intronic	NA
RCC_T3--6	chr15:73022157	A	NA	25	0	25	67.920	5.751	0	0	0	25	0	BBS4	intronic	NA
RCC_T3--7	chr15:73022157	A	NA	32	0	32	68.062	4.048	0	0	0	32	0	BBS4	intronic	NA
RCC_T3--8	chr15:73022157	A	NA	28	0	28	68.893	2.514	0	0	0	28	0	BBS4	intronic	NA
RCC_T3--GL	chr15:73022157	A	NA	35	0	35	67.429	5.013	0	0	0	35	0	BBS4	intronic	NA
RCC_T3--1	chr15:74315624	G	NA	18	0	18	61.889	9.273	0	0	0	18	0	PML	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:74315624	G	A	38	0.132	29	60.759	11.566	5	61.400	6.656	29	5	PML	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:74315624	G	NA	17	0	17	64.059	9.093	0	0	0	17	0	PML	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:74315624	G	NA	39	0	37	63.757	8.119	0	0	0	37	0	PML	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:74315624	G	NA	23	0	23	63.739	10.618	0	0	0	23	0	PML	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:74315624	G	NA	14	0	12	65.750	10.695	0	0	0	12	0	PML	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:74315624	G	NA	27	0	27	63.407	9.090	0	0	0	27	0	PML	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:74315624	G	NA	21	0	21	65.143	6.784	0	0	0	21	0	PML	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:74315624	G	NA	38	0	37	63.973	7.581	0	0	0	37	0	PML	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:74315714	T	NA	16	0	16	69.438	2.898	0	0	0	16	0	PML	exonic	nonsynonymous_SNV
RCC_T3--2	chr15:74315714	T	NA	17	0	17	65.706	9.054	0	0	0	17	0	PML	exonic	nonsynonymous_SNV
RCC_T3--3	chr15:74315714	T	NA	15	0	15	65.467	5.194	0	0	0	15	0	PML	exonic	nonsynonymous_SNV
RCC_T3--4	chr15:74315714	T	C	26	0.038	24	67.500	5.763	1	37.000	0.000	24	1	PML	exonic	nonsynonymous_SNV
RCC_T3--5	chr15:74315714	T	NA	28	0	28	66.857	5.861	0	0	0	28	0	PML	exonic	nonsynonymous_SNV
RCC_T3--6	chr15:74315714	T	NA	13	0	13	63.000	10.770	0	0	0	13	0	PML	exonic	nonsynonymous_SNV
RCC_T3--7	chr15:74315714	T	NA	38	0	38	66.211	6.842	0	0	0	38	0	PML	exonic	nonsynonymous_SNV
RCC_T3--8	chr15:74315714	T	C	20	0.200	16	67.688	4.377	4	64.750	5.737	16	4	PML	exonic	nonsynonymous_SNV
RCC_T3--GL	chr15:74315714	T	NA	33	0	33	63.667	9.340	0	0	0	33	0	PML	exonic	nonsynonymous_SNV
RCC_T3--1	chr15:91016322	G	NA	43	0	43	68.767	4.180	0	0	0	43	0	IQGAP1	intronic	NA
RCC_T3--2	chr15:91016322	G	NA	50	0	50	69.040	2.748	0	0	0	50	0	IQGAP1	intronic	NA
RCC_T3--3	chr15:91016322	G	NA	40	0	39	68.410	3.740	0	0	0	39	0	IQGAP1	intronic	NA
RCC_T3--4	chr15:91016322	G	NA	43	0	43	69.744	2.450	0	0	0	43	0	IQGAP1	intronic	NA
RCC_T3--5	chr15:91016322	G	NA	45	0	45	67.378	6.733	0	0	0	45	0	IQGAP1	intronic	NA
RCC_T3--6	chr15:91016322	G	NA	45	0	45	68.578	3.361	0	0	0	45	0	IQGAP1	intronic	NA
RCC_T3--7	chr15:91016322	G	NA	44	0	44	67.227	4.371	0	0	0	44	0	IQGAP1	intronic	NA
RCC_T3--8	chr15:91016322	G	A	47	0.234	36	67.389	6.817	11	68.727	3.797	36	11	IQGAP1	intronic	NA
RCC_T3--GL	chr15:91016322	G	NA	42	0	42	64.738	9.929	0	0	0	42	0	IQGAP1	intronic	NA
RCC_T3--1	chr16:1479173	C	NA	34	0	34	65.882	6.741	0	0	0	34	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--2	chr16:1479173	C	NA	43	0	43	65.977	7.824	0	0	0	43	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--3	chr16:1479173	C	NA	52	0	52	64.673	6.942	0	0	0	52	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--4	chr16:1479173	C	NA	41	0	41	65.488	7.447	0	0	0	41	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--5	chr16:1479173	C	NA	25	0	25	65.040	8.096	0	0	0	25	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--6	chr16:1479173	C	NA	22	0	22	65.455	7.136	0	0	0	22	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--7	chr16:1479173	C	NA	62	0	62	65.565	6.525	0	0	0	62	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--8	chr16:1479173	C	A	36	0.111	32	66.844	4.228	4	66.000	0.816	32	4	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--GL	chr16:1479173	C	NA	34	0	34	66.029	4.502	0	0	0	34	0	C16orf91(dist=8372),CCDC154(dist=5216)	intergenic	NA
RCC_T3--1	chr16:1504364	T	NA	31	0	31	65.968	9.611	0	0	0	31	0	CLCN7	intronic	NA
RCC_T3--2	chr16:1504364	T	NA	39	0	39	67.282	3.720	0	0	0	39	0	CLCN7	intronic	NA
RCC_T3--3	chr16:1504364	T	NA	30	0	30	66.933	3.523	0	0	0	30	0	CLCN7	intronic	NA
RCC_T3--4	chr16:1504364	T	NA	41	0	41	66.439	5.963	0	0	0	41	0	CLCN7	intronic	NA
RCC_T3--5	chr16:1504364	T	NA	27	0	27	65.185	7.751	0	0	0	27	0	CLCN7	intronic	NA
RCC_T3--6	chr16:1504364	T	C	21	0.190	17	63.824	12.300	4	52.250	22.232	17	4	CLCN7	intronic	NA
RCC_T3--7	chr16:1504364	T	NA	25	0	25	64.520	9.120	0	0	0	25	0	CLCN7	intronic	NA
RCC_T3--8	chr16:1504364	T	NA	38	0	37	66.865	5.922	0	0	0	37	0	CLCN7	intronic	NA
RCC_T3--GL	chr16:1504364	T	NA	37	0	37	64.649	7.779	0	0	0	37	0	CLCN7	intronic	NA
RCC_T3--1	chr16:1568350	G	NA	30	0	30	68.667	4.046	0	0	0	30	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:1568350	G	NA	39	0	39	65.897	6.585	0	0	0	39	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:1568350	G	NA	41	0	41	65.659	6.792	0	0	0	41	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:1568350	G	NA	44	0	44	66.727	6.500	0	0	0	44	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:1568350	G	NA	23	0	23	68.478	3.918	0	0	0	23	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:1568350	G	NA	36	0	36	65.917	4.631	0	0	0	36	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:1568350	G	NA	26	0	26	65.731	8.507	0	0	0	26	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:1568350	G	T	34	0.118	30	65.600	3.892	4	68.250	3.202	30	4	IFT140	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:1568350	G	NA	44	0	44	65.727	7.500	0	0	0	44	0	IFT140	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:16219604	G	NA	15	0	15	68.333	2.717	0	0	0	15	0	ABCC1	intronic	NA
RCC_T3--2	chr16:16219604	G	NA	24	0	24	67.042	5.361	0	0	0	24	0	ABCC1	intronic	NA
RCC_T3--3	chr16:16219604	G	NA	18	0	18	68.333	3.565	0	0	0	18	0	ABCC1	intronic	NA
RCC_T3--4	chr16:16219604	G	NA	24	0	24	66.417	5.516	0	0	0	24	0	ABCC1	intronic	NA
RCC_T3--5	chr16:16219604	G	A	21	0.190	17	63.176	9.945	4	60.750	10.500	17	4	ABCC1	intronic	NA
RCC_T3--6	chr16:16219604	G	NA	21	0	21	65.524	9.228	0	0	0	21	0	ABCC1	intronic	NA
RCC_T3--7	chr16:16219604	G	NA	31	0	31	67.839	5.286	0	0	0	31	0	ABCC1	intronic	NA
RCC_T3--8	chr16:16219604	G	NA	29	0	29	68.690	4.497	0	0	0	29	0	ABCC1	intronic	NA
RCC_T3--GL	chr16:16219604	G	NA	34	0	34	66.618	4.404	0	0	0	34	0	ABCC1	intronic	NA
RCC_T3--1	chr1:6188279	C	NA	24	0	24	67.333	5.403	0	0	0	24	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--2	chr1:6188279	C	NA	31	0	31	66.903	3.429	0	0	0	31	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--3	chr1:6188279	C	NA	47	0	47	64.702	7.627	0	0	0	47	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--4	chr1:6188279	C	NA	31	0	31	64.258	8.062	0	0	0	31	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--5	chr1:6188279	C	A	41	0.146	35	63.686	7.892	6	66.167	3.189	35	6	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--6	chr1:6188279	C	NA	29	0	29	65.345	9.389	0	0	0	29	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--7	chr1:6188279	C	NA	31	0	31	66.774	4.566	0	0	0	31	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--8	chr1:6188279	C	NA	32	0	32	68.281	3.837	0	0	0	32	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--GL	chr1:6188279	C	NA	41	0	41	66.341	5.242	0	0	0	41	0	CHD5(NM_015557:exon26:c.3731-1G>T)	splicing	NA
RCC_T3--1	chr16:18870241	C	T	54	0.315	37	68.000	3.266	17	65.529	4.230	37	17	SMG1	intronic	NA
RCC_T3--2	chr16:18870241	C	T	46	0.174	38	67.763	4.327	8	67.625	3.543	38	8	SMG1	intronic	NA
RCC_T3--3	chr16:18870241	C	T	56	0.393	33	67.303	5.828	22	67.091	4.275	33	22	SMG1	intronic	NA
RCC_T3--4	chr16:18870241	C	T	45	0.289	32	67.281	4.408	13	66.923	4.443	32	13	SMG1	intronic	NA
RCC_T3--5	chr16:18870241	C	T	28	0.036	26	67.115	5.559	1	70.000	0.000	26	1	SMG1	intronic	NA
RCC_T3--6	chr16:18870241	C	T	37	0.216	29	65.034	8.117	8	65.125	4.853	29	8	SMG1	intronic	NA
RCC_T3--7	chr16:18870241	C	T	44	0.205	35	67.086	4.422	9	66.444	3.127	35	9	SMG1	intronic	NA
RCC_T3--8	chr16:18870241	C	T	46	0.283	33	67.242	5.943	13	66.231	4.604	33	13	SMG1	intronic	NA
RCC_T3--GL	chr16:18870241	C	NA	56	0	56	64.946	7.411	0	0	0	56	0	SMG1	intronic	NA
RCC_T3--1	chr1:6195307	C	NA	44	0	44	65.705	6.900	0	0	0	44	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:6195307	C	NA	47	0	47	65.660	4.733	0	0	0	47	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:6195307	C	NA	64	0	64	65.250	9.191	0	0	0	64	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:6195307	C	A	65	0.123	57	66.561	5.641	8	63.875	3.643	57	8	CHD5	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:6195307	C	NA	59	0	59	65.305	5.852	0	0	0	59	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:6195307	C	NA	58	0	57	65.018	7.689	0	0	0	57	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:6195307	C	NA	54	0	54	66.278	5.554	0	0	0	54	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:6195307	C	NA	59	0	59	67.881	3.714	0	0	0	59	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:6195307	C	NA	79	0	79	64.835	5.578	0	0	0	79	0	CHD5	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:2026812	C	NA	38	0	38	67.158	7.343	0	0	0	38	0	TBL3	intronic	NA
RCC_T3--2	chr16:2026812	C	NA	51	0	51	65.961	9.625	0	0	0	51	0	TBL3	intronic	NA
RCC_T3--3	chr16:2026812	C	NA	40	0	40	65.250	6.632	0	0	0	40	0	TBL3	intronic	NA
RCC_T3--4	chr16:2026812	C	NA	41	0	41	65.756	8.276	0	0	0	41	0	TBL3	intronic	NA
RCC_T3--5	chr16:2026812	C	A	34	0.176	28	66.179	6.656	6	67.167	4.491	28	6	TBL3	intronic	NA
RCC_T3--6	chr16:2026812	C	NA	28	0	28	63.643	11.519	0	0	0	28	0	TBL3	intronic	NA
RCC_T3--7	chr16:2026812	C	NA	30	0	30	65.167	5.837	0	0	0	30	0	TBL3	intronic	NA
RCC_T3--8	chr16:2026812	C	NA	38	0	38	64.737	9.769	0	0	0	38	0	TBL3	intronic	NA
RCC_T3--GL	chr16:2026812	C	NA	38	0	38	65.263	6.302	0	0	0	38	0	TBL3	intronic	NA
RCC_T3--1	chr16:21272518	G	NA	33	0	33	67.455	4.835	0	0	0	33	0	CRYM	intronic	NA
RCC_T3--2	chr16:21272518	G	NA	45	0	45	67.222	4.122	0	0	0	45	0	CRYM	intronic	NA
RCC_T3--3	chr16:21272518	G	NA	45	0	45	65.911	6.086	0	0	0	45	0	CRYM	intronic	NA
RCC_T3--4	chr16:21272518	G	A	50	0.140	43	68.558	5.252	7	63.143	11.022	43	7	CRYM	intronic	NA
RCC_T3--5	chr16:21272518	G	NA	27	0	27	65.889	6.641	0	0	0	27	0	CRYM	intronic	NA
RCC_T3--6	chr16:21272518	G	NA	22	0	22	68.136	4.475	0	0	0	22	0	CRYM	intronic	NA
RCC_T3--7	chr16:21272518	G	NA	28	0	28	65.036	9.811	0	0	0	28	0	CRYM	intronic	NA
RCC_T3--8	chr16:21272518	G	NA	41	0	41	66.610	8.455	0	0	0	41	0	CRYM	intronic	NA
RCC_T3--GL	chr16:21272518	G	NA	35	0	35	68.400	3.583	0	0	0	35	0	CRYM	intronic	NA
RCC_T3--1	chr16:2135204	G	NA	37	0	37	63.162	7.603	0	0	0	37	0	TSC2	intronic	NA
RCC_T3--2	chr16:2135204	G	NA	40	0	40	61.650	10.332	0	0	0	40	0	TSC2	intronic	NA
RCC_T3--3	chr16:2135204	G	A	33	0.121	29	62.172	10.883	4	49.750	15.086	29	4	TSC2	intronic	NA
RCC_T3--4	chr16:2135204	G	NA	39	0	39	63.410	7.103	0	0	0	39	0	TSC2	intronic	NA
RCC_T3--5	chr16:2135204	G	NA	46	0	46	63.609	8.596	0	0	0	46	0	TSC2	intronic	NA
RCC_T3--6	chr16:2135204	G	NA	26	0	26	63.923	6.746	0	0	0	26	0	TSC2	intronic	NA
RCC_T3--7	chr16:2135204	G	NA	39	0	39	63.436	8.744	0	0	0	39	0	TSC2	intronic	NA
RCC_T3--8	chr16:2135204	G	NA	30	0	30	65.400	5.703	0	0	0	30	0	TSC2	intronic	NA
RCC_T3--GL	chr16:2135204	G	NA	39	0	39	63.308	8.170	0	0	0	39	0	TSC2	intronic	NA
RCC_T3--1	chr16:24817675	G	NA	23	0	23	69.174	4.053	0	0	0	23	0	TNRC6A	intronic	NA
RCC_T3--2	chr16:24817675	G	NA	30	0	30	68.600	3.979	0	0	0	30	0	TNRC6A	intronic	NA
RCC_T3--3	chr16:24817675	G	NA	32	0	32	66.719	5.560	0	0	0	32	0	TNRC6A	intronic	NA
RCC_T3--4	chr16:24817675	G	NA	26	0	26	69.115	4.170	0	0	0	26	0	TNRC6A	intronic	NA
RCC_T3--5	chr16:24817675	G	A	19	0.158	16	69.000	4.305	3	66.667	2.309	16	3	TNRC6A	intronic	NA
RCC_T3--6	chr16:24817675	G	NA	24	0	24	68.375	3.797	0	0	0	24	0	TNRC6A	intronic	NA
RCC_T3--7	chr16:24817675	G	NA	34	0	34	68.588	4.061	0	0	0	34	0	TNRC6A	intronic	NA
RCC_T3--8	chr16:24817675	G	NA	29	0	29	68.207	4.724	0	0	0	29	0	TNRC6A	intronic	NA
RCC_T3--GL	chr16:24817675	G	NA	41	0	41	68.561	3.147	0	0	0	41	0	TNRC6A	intronic	NA
RCC_T3--1	chr16:28986841	C	NA	45	0	45	66.200	5.061	0	0	0	45	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:28986841	C	NA	97	0	97	65.845	6.363	0	0	0	97	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:28986841	C	NA	69	0	69	64.826	7.715	0	0	0	69	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:28986841	C	NA	70	0	70	66.843	4.481	0	0	0	70	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:28986841	C	NA	45	0	45	66.756	4.007	0	0	0	45	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:28986841	C	NA	48	0	48	65.104	7.719	0	0	0	48	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:28986841	C	A	56	0.107	50	66.980	4.901	6	68.333	3.141	50	6	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:28986841	C	NA	64	0	64	66.031	6.946	0	0	0	64	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:28986841	C	NA	75	0	75	65.427	5.340	0	0	0	75	0	SPNS1	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:2986546	C	NA	24	0	24	65.667	8.463	0	0	0	24	0	FLYWCH1	intronic	NA
RCC_T3--2	chr16:2986546	C	NA	27	0	27	60.074	13.402	0	0	0	27	0	FLYWCH1	intronic	NA
RCC_T3--3	chr16:2986546	C	NA	36	0	36	65.306	6.431	0	0	0	36	0	FLYWCH1	intronic	NA
RCC_T3--4	chr16:2986546	C	NA	28	0	28	66.714	3.750	0	0	0	28	0	FLYWCH1	intronic	NA
RCC_T3--5	chr16:2986546	C	A	31	0.129	27	63.148	10.189	4	56.000	13.216	27	4	FLYWCH1	intronic	NA
RCC_T3--6	chr16:2986546	C	NA	20	0	20	63.350	9.399	0	0	0	20	0	FLYWCH1	intronic	NA
RCC_T3--7	chr16:2986546	C	NA	21	0	21	65.619	7.928	0	0	0	21	0	FLYWCH1	intronic	NA
RCC_T3--8	chr16:2986546	C	NA	22	0	22	65.000	10.867	0	0	0	22	0	FLYWCH1	intronic	NA
RCC_T3--GL	chr16:2986546	C	NA	46	0	45	63.222	9.542	0	0	0	45	0	FLYWCH1	intronic	NA
RCC_T3--1	chr16:30100519	A	NA	47	0	47	67.638	4.088	0	0	0	47	0	TBX6	exonic	synonymous_SNV
RCC_T3--2	chr16:30100519	A	NA	44	0	44	65.409	8.387	0	0	0	44	0	TBX6	exonic	synonymous_SNV
RCC_T3--3	chr16:30100519	A	NA	46	0	46	65.717	6.820	0	0	0	46	0	TBX6	exonic	synonymous_SNV
RCC_T3--4	chr16:30100519	A	NA	44	0	44	66.500	4.083	0	0	0	44	0	TBX6	exonic	synonymous_SNV
RCC_T3--5	chr16:30100519	A	T	28	0.143	24	65.125	8.644	4	64.500	2.380	24	4	TBX6	exonic	synonymous_SNV
RCC_T3--6	chr16:30100519	A	NA	37	0	37	65.730	8.793	0	0	0	37	0	TBX6	exonic	synonymous_SNV
RCC_T3--7	chr16:30100519	A	NA	67	0	67	65.373	9.247	0	0	0	67	0	TBX6	exonic	synonymous_SNV
RCC_T3--8	chr16:30100519	A	NA	47	0	47	63.447	9.033	0	0	0	47	0	TBX6	exonic	synonymous_SNV
RCC_T3--GL	chr16:30100519	A	NA	65	0	65	63.646	8.679	0	0	0	65	0	TBX6	exonic	synonymous_SNV
RCC_T3--1	chr16:31120926	T	C	42	0.214	33	64.182	7.896	9	68.333	3.122	33	9	BCKDK	intronic	NA
RCC_T3--2	chr16:31120926	T	C	50	0.080	46	65.435	6.619	4	58.250	2.872	46	4	BCKDK	intronic	NA
RCC_T3--3	chr16:31120926	T	C	49	0.204	39	66.462	6.565	10	66.100	6.740	39	10	BCKDK	intronic	NA
RCC_T3--4	chr16:31120926	T	C	49	0.306	34	64.147	8.669	15	65.200	9.526	34	15	BCKDK	intronic	NA
RCC_T3--5	chr16:31120926	T	C	39	0.051	37	63.054	8.819	2	51.000	16.971	37	2	BCKDK	intronic	NA
RCC_T3--6	chr16:31120926	T	C	35	0.086	32	62.969	10.657	3	66.667	1.528	32	3	BCKDK	intronic	NA
RCC_T3--7	chr16:31120926	T	C	47	0.362	30	64.667	7.840	17	65.235	4.777	30	17	BCKDK	intronic	NA
RCC_T3--8	chr16:31120926	T	C	60	0.267	44	61.955	11.192	16	63.250	9.169	44	16	BCKDK	intronic	NA
RCC_T3--GL	chr16:31120926	T	NA	44	0	44	64.455	7.869	0	0	0	44	0	BCKDK	intronic	NA
RCC_T3--1	chr16:31383092	A	NA	46	0	46	62.543	6.856	0	0	0	46	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:31383092	A	NA	29	0	29	64.034	7.326	0	0	0	29	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:31383092	A	NA	40	0	40	60.475	9.863	0	0	0	40	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:31383092	A	G	39	0.154	33	60.121	9.158	6	57.333	13.018	33	6	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:31383092	A	NA	50	0	50	63.840	6.303	0	0	0	50	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:31383092	A	NA	49	0	48	63.396	7.382	0	0	0	48	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:31383092	A	NA	55	0	55	62.182	8.249	0	0	0	55	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:31383092	A	NA	42	0	42	63.905	7.237	0	0	0	42	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:31383092	A	NA	38	0	38	58.316	11.473	0	0	0	38	0	ITGAX	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:31391086	C	NA	21	0	21	63.476	8.875	0	0	0	21	0	ITGAX	exonic	synonymous_SNV
RCC_T3--2	chr16:31391086	C	NA	26	0	26	63.692	11.743	0	0	0	26	0	ITGAX	exonic	synonymous_SNV
RCC_T3--3	chr16:31391086	C	NA	29	0	29	64.379	7.975	0	0	0	29	0	ITGAX	exonic	synonymous_SNV
RCC_T3--4	chr16:31391086	C	NA	18	0	18	66.500	7.801	0	0	0	18	0	ITGAX	exonic	synonymous_SNV
RCC_T3--5	chr16:31391086	C	NA	29	0	29	62.241	9.303	0	0	0	29	0	ITGAX	exonic	synonymous_SNV
RCC_T3--6	chr16:31391086	C	T	30	0.167	25	64.520	10.697	5	57.800	14.873	25	5	ITGAX	exonic	synonymous_SNV
RCC_T3--7	chr16:31391086	C	NA	28	0	28	64.071	6.716	0	0	0	28	0	ITGAX	exonic	synonymous_SNV
RCC_T3--8	chr16:31391086	C	T	25	0.080	23	64.522	8.442	2	67.500	3.536	23	2	ITGAX	exonic	synonymous_SNV
RCC_T3--GL	chr16:31391086	C	NA	35	0	35	62.171	12.121	0	0	0	35	0	ITGAX	exonic	synonymous_SNV
RCC_T3--1	chr16:31500533	G	NA	37	0	37	61.189	9.800	0	0	0	37	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--2	chr16:31500533	G	NA	42	0	42	63.690	7.521	0	0	0	42	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--3	chr16:31500533	G	NA	32	0	32	61.281	11.182	0	0	0	32	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--4	chr16:31500533	G	NA	37	0	37	62.216	9.549	0	0	0	37	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--5	chr16:31500533	G	NA	31	0	31	63.097	8.498	0	0	0	31	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--6	chr16:31500533	G	NA	40	0	39	64.462	8.522	0	0	0	39	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--7	chr16:31500533	G	A	39	0.128	33	59.424	13.654	5	61.200	5.263	33	5	SLC5A2	exonic	synonymous_SNV
RCC_T3--8	chr16:31500533	G	NA	28	0	28	59.964	11.714	0	0	0	28	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--GL	chr16:31500533	G	NA	40	0	40	61.475	9.362	0	0	0	40	0	SLC5A2	exonic	synonymous_SNV
RCC_T3--1	chr16:3299380	A	NA	22	0	21	67.524	3.600	0	0	0	21	0	MEFV	intronic	NA
RCC_T3--2	chr16:3299380	A	NA	23	0	23	67.913	5.736	0	0	0	23	0	MEFV	intronic	NA
RCC_T3--3	chr16:3299380	A	NA	29	0	29	66.862	5.642	0	0	0	29	0	MEFV	intronic	NA
RCC_T3--4	chr16:3299380	A	T	25	0.160	21	66.381	6.584	4	64.500	1.915	21	4	MEFV	intronic	NA
RCC_T3--5	chr16:3299380	A	NA	14	0	14	61.000	11.642	0	0	0	14	0	MEFV	intronic	NA
RCC_T3--6	chr16:3299380	A	NA	18	0	18	65.556	5.216	0	0	0	18	0	MEFV	intronic	NA
RCC_T3--7	chr16:3299380	A	NA	24	0	24	65.583	7.918	0	0	0	24	0	MEFV	intronic	NA
RCC_T3--8	chr16:3299380	A	NA	38	0	38	67.211	5.126	0	0	0	38	0	MEFV	intronic	NA
RCC_T3--GL	chr16:3299380	A	NA	35	0	35	66.771	7.224	0	0	0	35	0	MEFV	intronic	NA
RCC_T3--1	chr16:33412679	G	A	34	0.118	30	68.300	7.340	4	70.500	1.915	30	4	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--2	chr16:33412679	G	A	54	0.222	42	69.571	2.777	12	68.500	2.812	42	12	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--3	chr16:33412679	G	A	57	0.228	44	68.500	3.950	13	68.231	3.032	44	13	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--4	chr16:33412679	G	A	40	0.225	31	68.097	5.088	9	63.444	11.918	31	9	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--5	chr16:33412679	G	A	51	0.294	36	65.694	8.451	15	67.733	5.120	36	15	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--6	chr16:33412679	G	A	30	0.167	25	68.560	3.150	5	68.200	4.266	25	5	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--7	chr16:33412679	G	A	42	0.333	28	70.143	3.546	14	67.357	7.899	28	14	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--8	chr16:33412679	G	A	46	0.217	36	65.944	8.387	10	68.100	5.109	36	10	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--GL	chr16:33412679	G	NA	46	0	46	67.630	6.427	0	0	0	46	0	LOC390705(dist=113977),RNU6-76P(dist=50828)	intergenic	NA
RCC_T3--1	chr16:3592097	G	A	18	0.167	15	66.867	6.022	3	65.667	2.309	15	3	NLRC3	intronic	NA
RCC_T3--2	chr16:3592097	G	NA	26	0	26	68.346	5.051	0	0	0	26	0	NLRC3	intronic	NA
RCC_T3--3	chr16:3592097	G	NA	26	0	26	66.923	5.663	0	0	0	26	0	NLRC3	intronic	NA
RCC_T3--4	chr16:3592097	G	NA	24	0	24	67.583	3.878	0	0	0	24	0	NLRC3	intronic	NA
RCC_T3--5	chr16:3592097	G	NA	18	0	18	67.000	6.231	0	0	0	18	0	NLRC3	intronic	NA
RCC_T3--6	chr16:3592097	G	NA	20	0	20	66.400	3.251	0	0	0	20	0	NLRC3	intronic	NA
RCC_T3--7	chr16:3592097	G	NA	31	0	31	65.742	7.814	0	0	0	31	0	NLRC3	intronic	NA
RCC_T3--8	chr16:3592097	G	NA	20	0	20	69.150	2.700	0	0	0	20	0	NLRC3	intronic	NA
RCC_T3--GL	chr16:3592097	G	NA	39	0	39	65.410	9.880	0	0	0	39	0	NLRC3	intronic	NA
RCC_T3--1	chr1:65099721	C	NA	47	0	47	59.426	12.254	0	0	0	47	0	CACHD1	intronic	NA
RCC_T3--2	chr1:65099721	C	NA	45	0	44	64.136	7.660	0	0	0	44	0	CACHD1	intronic	NA
RCC_T3--3	chr1:65099721	C	NA	46	0	46	62.109	9.980	0	0	0	46	0	CACHD1	intronic	NA
RCC_T3--4	chr1:65099721	C	NA	62	0	62	57.661	13.636	0	0	0	62	0	CACHD1	intronic	NA
RCC_T3--5	chr1:65099721	C	A	52	0.115	45	62.133	11.409	6	57.333	12.801	45	6	CACHD1	intronic	NA
RCC_T3--6	chr1:65099721	C	NA	39	0	39	62.538	9.746	0	0	0	39	0	CACHD1	intronic	NA
RCC_T3--7	chr1:65099721	C	NA	44	0	44	58.614	13.138	0	0	0	44	0	CACHD1	intronic	NA
RCC_T3--8	chr1:65099721	C	NA	52	0	52	62.115	10.365	0	0	0	52	0	CACHD1	intronic	NA
RCC_T3--GL	chr1:65099721	C	NA	50	0	50	57.180	12.569	0	0	0	50	0	CACHD1	intronic	NA
RCC_T3--1	chr16:56875809	C	T	42	0.024	41	67.707	3.466	1	72.000	0.000	41	1	NUP93	intronic	NA
RCC_T3--2	chr16:56875809	C	NA	54	0	54	65.870	8.857	0	0	0	54	0	NUP93	intronic	NA
RCC_T3--3	chr16:56875809	C	NA	60	0	60	66.667	6.571	0	0	0	60	0	NUP93	intronic	NA
RCC_T3--4	chr16:56875809	C	NA	37	0	37	66.378	7.166	0	0	0	37	0	NUP93	intronic	NA
RCC_T3--5	chr16:56875809	C	T	37	0.108	33	66.606	9.608	4	62.250	5.315	33	4	NUP93	intronic	NA
RCC_T3--6	chr16:56875809	C	NA	30	0	30	66.700	5.396	0	0	0	30	0	NUP93	intronic	NA
RCC_T3--7	chr16:56875809	C	NA	68	0	68	67.706	4.222	0	0	0	68	0	NUP93	intronic	NA
RCC_T3--8	chr16:56875809	C	NA	46	0	46	67.370	7.481	0	0	0	46	0	NUP93	intronic	NA
RCC_T3--GL	chr16:56875809	C	NA	45	0	45	65.578	6.807	0	0	0	45	0	NUP93	intronic	NA
RCC_T3--1	chr16:57732091	G	A	39	0.128	34	66.941	4.651	5	63.200	2.168	34	5	CCDC135	intronic	NA
RCC_T3--2	chr16:57732091	G	NA	48	0	48	64.771	9.594	0	0	0	48	0	CCDC135	intronic	NA
RCC_T3--3	chr16:57732091	G	NA	52	0	52	65.596	4.098	0	0	0	52	0	CCDC135	intronic	NA
RCC_T3--4	chr16:57732091	G	NA	43	0	43	65.512	8.169	0	0	0	43	0	CCDC135	intronic	NA
RCC_T3--5	chr16:57732091	G	NA	62	0	62	64.532	8.848	0	0	0	62	0	CCDC135	intronic	NA
RCC_T3--6	chr16:57732091	G	NA	44	0	44	66.023	6.226	0	0	0	44	0	CCDC135	intronic	NA
RCC_T3--7	chr16:57732091	G	NA	41	0	41	64.634	9.728	0	0	0	41	0	CCDC135	intronic	NA
RCC_T3--8	chr16:57732091	G	NA	52	0	52	63.038	10.161	0	0	0	52	0	CCDC135	intronic	NA
RCC_T3--GL	chr16:57732091	G	NA	43	0	43	64.907	7.157	0	0	0	43	0	CCDC135	intronic	NA
RCC_T3--1	chr16:58619518	A	NA	20	0	20	67.200	8.829	0	0	0	20	0	CNOT1	intronic	NA
RCC_T3--2	chr16:58619518	A	NA	20	0	20	68.050	3.993	0	0	0	20	0	CNOT1	intronic	NA
RCC_T3--3	chr16:58619518	A	NA	22	0	22	68.409	2.971	0	0	0	22	0	CNOT1	intronic	NA
RCC_T3--4	chr16:58619518	A	NA	16	0	16	68.562	2.159	0	0	0	16	0	CNOT1	intronic	NA
RCC_T3--5	chr16:58619518	A	NA	21	0	21	68.571	3.280	0	0	0	21	0	CNOT1	intronic	NA
RCC_T3--6	chr16:58619518	A	T	17	0.235	13	68.615	3.776	4	61.750	0.500	13	4	CNOT1	intronic	NA
RCC_T3--7	chr16:58619518	A	NA	27	0	27	70.296	1.815	0	0	0	27	0	CNOT1	intronic	NA
RCC_T3--8	chr16:58619518	A	NA	22	0	22	67.318	8.758	0	0	0	22	0	CNOT1	intronic	NA
RCC_T3--GL	chr16:58619518	A	NA	35	0	35	69.286	2.803	0	0	0	35	0	CNOT1	intronic	NA
RCC_T3--1	chr16:58713767	C	NA	27	0	27	65.704	3.911	0	0	0	27	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--2	chr16:58713767	C	NA	29	0	29	64.793	7.514	0	0	0	29	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--3	chr16:58713767	C	NA	25	0	25	65.720	3.714	0	0	0	25	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--4	chr16:58713767	C	NA	30	0	30	63.767	4.470	0	0	0	30	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--5	chr16:58713767	C	T	23	0.174	19	65.632	3.715	4	40.250	14.500	19	4	SLC38A7	exonic	synonymous_SNV
RCC_T3--6	chr16:58713767	C	NA	19	0	19	66.789	4.577	0	0	0	19	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--7	chr16:58713767	C	NA	33	0	33	62.364	8.007	0	0	0	33	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--8	chr16:58713767	C	NA	15	0	15	65.800	3.468	0	0	0	15	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--GL	chr16:58713767	C	NA	39	0	39	64.179	8.198	0	0	0	39	0	SLC38A7	exonic	synonymous_SNV
RCC_T3--1	chr16:66584068	C	A	35	0.114	31	65.226	3.972	4	64.250	2.217	31	4	TK2	UTR5	NA
RCC_T3--2	chr16:66584068	C	NA	35	0	35	65.057	4.721	0	0	0	35	0	TK2	UTR5	NA
RCC_T3--3	chr16:66584068	C	NA	24	0	24	66.500	4.462	0	0	0	24	0	TK2	UTR5	NA
RCC_T3--4	chr16:66584068	C	NA	28	0	28	65.643	6.690	0	0	0	28	0	TK2	UTR5	NA
RCC_T3--5	chr16:66584068	C	NA	24	0	24	62.875	7.635	0	0	0	24	0	TK2	UTR5	NA
RCC_T3--6	chr16:66584068	C	NA	34	0	34	62.882	7.761	0	0	0	34	0	TK2	UTR5	NA
RCC_T3--7	chr16:66584068	C	NA	48	0	48	63.208	8.757	0	0	0	48	0	TK2	UTR5	NA
RCC_T3--8	chr16:66584068	C	NA	28	0	28	64.929	4.883	0	0	0	28	0	TK2	UTR5	NA
RCC_T3--GL	chr16:66584068	C	NA	44	0	44	63.659	8.996	0	0	0	44	0	TK2	UTR5	NA
RCC_T3--1	chr16:67314084	C	NA	48	0	48	68.146	6.018	0	0	0	48	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:67314084	C	NA	79	0	79	67.722	5.625	0	0	0	79	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:67314084	C	NA	76	0	76	65.500	8.069	0	0	0	76	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:67314084	C	NA	42	0	42	65.333	9.054	0	0	0	42	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:67314084	C	NA	52	0	52	65.500	6.283	0	0	0	52	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:67314084	C	NA	50	0	50	64.820	7.676	0	0	0	50	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:67314084	C	T	51	0.118	45	66.578	4.025	6	58.500	11.726	45	6	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:67314084	C	NA	56	0	56	64.625	8.960	0	0	0	56	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:67314084	C	NA	60	0	60	66.233	7.382	0	0	0	60	0	PLEKHG4	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:67861701	C	NA	41	0	41	67.707	3.579	0	0	0	41	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--2	chr16:67861701	C	NA	59	0	59	66.542	5.984	0	0	0	59	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--3	chr16:67861701	C	A	54	0.111	48	65.188	7.454	6	57.500	12.598	48	6	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--4	chr16:67861701	C	NA	53	0	53	66.566	5.139	0	0	0	53	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--5	chr16:67861701	C	NA	43	0	43	65.093	7.470	0	0	0	43	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--6	chr16:67861701	C	NA	59	0	59	64.746	6.288	0	0	0	59	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--7	chr16:67861701	C	NA	51	0	51	65.961	7.874	0	0	0	51	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--8	chr16:67861701	C	NA	47	0	47	64.511	7.929	0	0	0	47	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--GL	chr16:67861701	C	NA	53	0	53	61.660	10.331	0	0	0	53	0	TSNAXIP1	exonic	synonymous_SNV
RCC_T3--1	chr1:6680250	T	NA	34	0	34	66.353	5.262	0	0	0	34	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:6680250	T	NA	39	0	39	65.692	7.399	0	0	0	39	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:6680250	T	NA	55	0	55	65.636	7.590	0	0	0	55	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:6680250	T	NA	32	0	32	66.062	5.792	0	0	0	32	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:6680250	T	NA	33	0	33	64.182	8.805	0	0	0	33	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:6680250	T	C	31	0.129	27	64.889	5.316	4	63.750	8.958	27	4	PHF13	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:6680250	T	NA	39	0	39	65.897	3.979	0	0	0	39	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:6680250	T	NA	47	0	47	65.170	7.710	0	0	0	47	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:6680250	T	NA	43	0	43	65.744	4.781	0	0	0	43	0	PHF13	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:69791199	G	NA	32	0	32	66.281	7.389	0	0	0	32	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--2	chr16:69791199	G	NA	31	0	31	66.387	5.719	0	0	0	31	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--3	chr16:69791199	G	NA	38	0	38	65.237	9.933	0	0	0	38	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--4	chr16:69791199	G	NA	31	0	31	67.387	4.522	0	0	0	31	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--5	chr16:69791199	G	T	34	0.118	30	67.633	4.810	4	66.250	4.573	30	4	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--6	chr16:69791199	G	NA	26	0	26	64.808	10.454	0	0	0	26	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--7	chr16:69791199	G	NA	36	0	36	65.222	6.795	0	0	0	36	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--8	chr16:69791199	G	NA	43	0	42	64.881	9.813	0	0	0	42	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--GL	chr16:69791199	G	NA	43	0	43	66.000	7.743	0	0	0	43	0	NOB1(dist=2328),WWP2(dist=4988)	intergenic	NA
RCC_T3--1	chr16:733717	A	G	28	0.214	22	65.682	4.444	6	64.667	4.676	22	6	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:733717	A	NA	38	0	38	65.395	4.711	0	0	0	38	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:733717	A	NA	45	0	45	61.667	10.245	0	0	0	45	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:733717	A	NA	28	0	28	62.000	10.015	0	0	0	28	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:733717	A	NA	29	0	29	64.448	7.633	0	0	0	29	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:733717	A	NA	44	0	44	61.636	9.984	0	0	0	44	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:733717	A	NA	31	0	31	66.194	4.826	0	0	0	31	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:733717	A	NA	20	0	20	61.450	8.733	0	0	0	20	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:733717	A	NA	48	0	48	61.146	10.806	0	0	0	48	0	JMJD8	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:81181817	C	A	34	0.118	30	67.200	3.690	4	62.750	1.500	30	4	PKD1L2	exonic	unknown
RCC_T3--2	chr16:81181817	C	NA	34	0	34	65.382	5.382	0	0	0	34	0	PKD1L2	exonic	unknown
RCC_T3--3	chr16:81181817	C	NA	37	0	37	63.135	8.397	0	0	0	37	0	PKD1L2	exonic	unknown
RCC_T3--4	chr16:81181817	C	NA	51	0	51	64.294	8.929	0	0	0	51	0	PKD1L2	exonic	unknown
RCC_T3--5	chr16:81181817	C	NA	44	0	44	65.705	5.936	0	0	0	44	0	PKD1L2	exonic	unknown
RCC_T3--6	chr16:81181817	C	NA	33	0	33	64.152	5.392	0	0	0	33	0	PKD1L2	exonic	unknown
RCC_T3--7	chr16:81181817	C	NA	54	0	54	64.944	6.997	0	0	0	54	0	PKD1L2	exonic	unknown
RCC_T3--8	chr16:81181817	C	NA	36	0	36	62.250	10.132	0	0	0	36	0	PKD1L2	exonic	unknown
RCC_T3--GL	chr16:81181817	C	NA	39	0	39	65.128	6.775	0	0	0	39	0	PKD1L2	exonic	unknown
RCC_T3--1	chr16:81314621	A	NA	27	0	24	59.375	11.586	0	0	0	24	0	BCMO1	intronic	NA
RCC_T3--2	chr16:81314621	A	T	45	0.022	43	58.535	10.877	1	41.000	0.000	43	1	BCMO1	intronic	NA
RCC_T3--3	chr16:81314621	A	T	32	0.031	29	61.345	10.434	1	41.000	0.000	29	1	BCMO1	intronic	NA
RCC_T3--4	chr16:81314621	A	NA	36	0	35	61.000	10.984	0	0	0	35	0	BCMO1	intronic	NA
RCC_T3--5	chr16:81314621	A	T	19	0.158	15	53.000	14.904	3	43.000	5.292	15	3	BCMO1	intronic	NA
RCC_T3--6	chr16:81314621	A	NA	23	0	20	62.400	10.159	0	0	0	20	0	BCMO1	intronic	NA
RCC_T3--7	chr16:81314621	A	T	32	0.031	28	58.929	11.585	1	46.000	0.000	28	1	BCMO1	intronic	NA
RCC_T3--8	chr16:81314621	A	T	24	0.167	17	57.118	11.308	4	40.000	1.155	17	4	BCMO1	intronic	NA
RCC_T3--GL	chr16:81314621	A	NA	47	0	44	56.659	11.971	0	0	0	44	0	BCMO1	intronic	NA
RCC_T3--1	chr16:84043469	C	NA	55	0	55	66.691	7.637	0	0	0	55	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:84043469	C	A	39	0.154	33	65.636	7.749	6	60.500	8.479	33	6	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:84043469	C	NA	58	0	58	65.293	7.746	0	0	0	58	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:84043469	C	NA	56	0	56	65.054	8.328	0	0	0	56	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:84043469	C	NA	48	0	48	62.833	10.515	0	0	0	48	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:84043469	C	NA	33	0	33	68.121	3.160	0	0	0	33	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:84043469	C	NA	49	0	49	68.224	4.575	0	0	0	49	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:84043469	C	NA	40	0	40	65.825	6.189	0	0	0	40	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:84043469	C	NA	48	0	48	65.646	6.862	0	0	0	48	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:84070399	G	NA	17	0	17	67.824	4.157	0	0	0	17	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:84070399	G	NA	35	0	35	66.200	4.714	0	0	0	35	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:84070399	G	NA	38	0	38	63.474	6.908	0	0	0	38	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:84070399	G	A	29	0.172	24	65.333	5.036	5	60.600	11.546	24	5	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:84070399	G	NA	35	0	35	66.457	3.705	0	0	0	35	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:84070399	G	NA	24	0	24	65.583	7.829	0	0	0	24	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:84070399	G	NA	38	0	38	63.921	9.210	0	0	0	38	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:84070399	G	NA	40	0	40	66.175	7.359	0	0	0	40	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:84070399	G	NA	40	0	40	66.325	4.576	0	0	0	40	0	SLC38A8	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:84088011	C	T	23	0.130	20	65.650	4.234	3	63.667	6.110	20	3	MBTPS1	UTR3	NA
RCC_T3--2	chr16:84088011	C	NA	37	0	37	63.865	8.674	0	0	0	37	0	MBTPS1	UTR3	NA
RCC_T3--3	chr16:84088011	C	NA	34	0	34	62.706	7.818	0	0	0	34	0	MBTPS1	UTR3	NA
RCC_T3--4	chr16:84088011	C	NA	42	0	42	65.738	8.115	0	0	0	42	0	MBTPS1	UTR3	NA
RCC_T3--5	chr16:84088011	C	NA	33	0	33	66.242	7.746	0	0	0	33	0	MBTPS1	UTR3	NA
RCC_T3--6	chr16:84088011	C	NA	44	0	44	61.295	12.292	0	0	0	44	0	MBTPS1	UTR3	NA
RCC_T3--7	chr16:84088011	C	NA	37	0	36	66.472	4.326	0	0	0	36	0	MBTPS1	UTR3	NA
RCC_T3--8	chr16:84088011	C	NA	59	0	58	63.707	8.335	0	0	0	58	0	MBTPS1	UTR3	NA
RCC_T3--GL	chr16:84088011	C	NA	40	0	40	63.675	6.840	0	0	0	40	0	MBTPS1	UTR3	NA
RCC_T3--1	chr16:84135114	G	NA	19	0	19	58.579	11.706	0	0	0	19	0	MBTPS1	intronic	NA
RCC_T3--2	chr16:84135114	G	A	35	0.057	33	59.061	10.668	2	35.500	3.536	33	2	MBTPS1	intronic	NA
RCC_T3--3	chr16:84135114	G	A	32	0.188	26	56.115	13.012	6	38.667	5.854	26	6	MBTPS1	intronic	NA
RCC_T3--4	chr16:84135114	G	A	25	0.040	24	58.667	10.869	1	38.000	0.000	24	1	MBTPS1	intronic	NA
RCC_T3--5	chr16:84135114	G	A	11	0.091	10	61.500	7.962	1	39.000	0.000	10	1	MBTPS1	intronic	NA
RCC_T3--6	chr16:84135114	G	A	35	0.086	32	59.719	11.058	3	37.000	3.464	32	3	MBTPS1	intronic	NA
RCC_T3--7	chr16:84135114	G	A	28	0.036	27	60.333	8.625	1	37.000	0.000	27	1	MBTPS1	intronic	NA
RCC_T3--8	chr16:84135114	G	A	31	0.065	29	58.448	10.346	2	35.500	3.536	29	2	MBTPS1	intronic	NA
RCC_T3--GL	chr16:84135114	G	NA	33	0	33	57.485	13.182	0	0	0	33	0	MBTPS1	intronic	NA
RCC_T3--1	chr16:84353169	G	NA	27	0	27	63.963	7.419	0	0	0	27	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:84353169	G	NA	31	0	31	65.548	5.156	0	0	0	31	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:84353169	G	A	38	0.026	37	63.081	11.099	1	65.000	0.000	37	1	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:84353169	G	NA	31	0	31	67.194	3.674	0	0	0	31	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:84353169	G	A	37	0.108	33	62.394	10.065	4	67.250	3.948	33	4	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:84353169	G	NA	39	0	39	63.205	9.690	0	0	0	39	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:84353169	G	NA	44	0	44	65.182	8.030	0	0	0	44	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:84353169	G	NA	25	0	25	65.880	4.484	0	0	0	25	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:84353169	G	NA	37	0	37	62.730	9.094	0	0	0	37	0	WFDC1	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:88889022	C	NA	31	0	31	64.548	8.066	0	0	0	31	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:88889022	C	NA	34	0	34	65.353	7.319	0	0	0	34	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:88889022	C	NA	17	0	17	64.647	7.541	0	0	0	17	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:88889022	C	NA	28	0	28	64.250	8.136	0	0	0	28	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:88889022	C	NA	27	0	27	63.963	5.687	0	0	0	27	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:88889022	C	NA	28	0	28	64.821	9.627	0	0	0	28	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:88889022	C	A	34	0.118	30	65.233	5.734	4	59.750	6.344	30	4	GALNS	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:88889022	C	NA	22	0	22	65.136	8.248	0	0	0	22	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:88889022	C	NA	34	0	34	62.706	10.553	0	0	0	34	0	GALNS	exonic	nonsynonymous_SNV
RCC_T3--1	chr1:68952565	A	T	61	0.033	33	70.242	2.475	2	63.500	2.121	33	2	DEPDC1	intronic	NA
RCC_T3--2	chr1:68952565	A	T	74	0.014	47	67.809	6.272	1	47.000	0.000	47	1	DEPDC1	intronic	NA
RCC_T3--3	chr1:68952565	A	T	73	0.027	32	67.562	4.918	2	65.000	0.000	32	2	DEPDC1	intronic	NA
RCC_T3--4	chr1:68952565	A	T	68	0.029	37	68.324	6.115	2	52.000	18.385	37	2	DEPDC1	intronic	NA
RCC_T3--5	chr1:68952565	A	T	56	0.054	24	68.583	4.568	3	55.333	19.399	24	3	DEPDC1	intronic	NA
RCC_T3--6	chr1:68952565	A	T	75	0.053	52	68.712	5.809	4	56.500	16.010	52	4	DEPDC1	intronic	NA
RCC_T3--7	chr1:68952565	A	T	70	0.014	50	67.080	7.390	1	65.000	0.000	50	1	DEPDC1	intronic	NA
RCC_T3--8	chr1:68952565	A	T	61	0.098	26	66.692	7.047	6	59.667	13.201	26	6	DEPDC1	intronic	NA
RCC_T3--GL	chr1:68952565	A	NA	65	0	42	68.310	4.901	0	0	0	42	0	DEPDC1	intronic	NA
RCC_T3--1	chr1:68952566	C	A	60	0.033	31	69.968	3.093	2	60.000	11.314	31	2	DEPDC1	intronic	NA
RCC_T3--2	chr1:68952566	C	A	72	0.014	43	67.023	7.373	1	63.000	0.000	43	1	DEPDC1	intronic	NA
RCC_T3--3	chr1:68952566	C	A	74	0.041	30	68.333	6.299	3	55.667	19.655	30	3	DEPDC1	intronic	NA
RCC_T3--4	chr1:68952566	C	A	69	0.029	36	66.278	10.233	2	49.000	22.627	36	2	DEPDC1	intronic	NA
RCC_T3--5	chr1:68952566	C	A	58	0.086	22	68.636	4.042	5	51.400	17.009	22	5	DEPDC1	intronic	NA
RCC_T3--6	chr1:68952566	C	A	75	0.053	50	67.460	6.849	4	55.750	15.861	50	4	DEPDC1	intronic	NA
RCC_T3--7	chr1:68952566	C	A	69	0.029	44	67.341	7.370	2	50.500	24.749	44	2	DEPDC1	intronic	NA
RCC_T3--8	chr1:68952566	C	A	62	0.113	27	65.741	9.436	7	56.429	16.040	27	7	DEPDC1	intronic	NA
RCC_T3--GL	chr1:68952566	C	NA	65	0	41	68.049	4.754	0	0	0	41	0	DEPDC1	intronic	NA
RCC_T3--1	chr16:89603426	C	NA	26	0	26	67.231	3.713	0	0	0	26	0	SPG7	UTR3	NA
RCC_T3--2	chr16:89603426	C	A	28	0.143	24	66.833	8.160	4	66.000	4.690	24	4	SPG7	UTR3	NA
RCC_T3--3	chr16:89603426	C	NA	28	0	28	67.786	3.655	0	0	0	28	0	SPG7	UTR3	NA
RCC_T3--4	chr16:89603426	C	NA	33	0	33	65.576	9.404	0	0	0	33	0	SPG7	UTR3	NA
RCC_T3--5	chr16:89603426	C	NA	20	0	20	65.800	4.420	0	0	0	20	0	SPG7	UTR3	NA
RCC_T3--6	chr16:89603426	C	NA	23	0	23	65.826	3.446	0	0	0	23	0	SPG7	UTR3	NA
RCC_T3--7	chr16:89603426	C	NA	25	0	25	67.120	3.855	0	0	0	25	0	SPG7	UTR3	NA
RCC_T3--8	chr16:89603426	C	NA	26	0	26	68.462	4.120	0	0	0	26	0	SPG7	UTR3	NA
RCC_T3--GL	chr16:89603426	C	NA	53	0	53	65.981	6.860	0	0	0	53	0	SPG7	UTR3	NA
RCC_T3--1	chr16:89922080	C	NA	13	0	13	63.692	10.070	0	0	0	13	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--2	chr16:89922080	C	NA	30	0	30	65.200	6.321	0	0	0	30	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--3	chr16:89922080	C	NA	32	0	32	65.562	7.157	0	0	0	32	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--4	chr16:89922080	C	NA	19	0	19	60.211	10.794	0	0	0	19	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--5	chr16:89922080	C	NA	16	0	16	60.562	11.860	0	0	0	16	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--6	chr16:89922080	C	T	28	0.143	24	62.458	10.043	4	55.250	14.886	24	4	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--7	chr16:89922080	C	NA	25	0	25	63.080	7.483	0	0	0	25	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--8	chr16:89922080	C	NA	25	0	25	64.040	7.586	0	0	0	25	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr16:89922080	C	NA	38	0	38	63.263	8.892	0	0	0	38	0	SPIRE2	exonic	nonsynonymous_SNV
RCC_T3--1	chr16:89935860	A	NA	34	0	34	66.618	9.145	0	0	0	34	0	SPIRE2	intronic	NA
RCC_T3--2	chr16:89935860	A	NA	45	0	45	67.800	5.953	0	0	0	45	0	SPIRE2	intronic	NA
RCC_T3--3	chr16:89935860	A	NA	35	0	35	66.771	7.260	0	0	0	35	0	SPIRE2	intronic	NA
RCC_T3--4	chr16:89935860	A	NA	38	0	38	68.184	4.854	0	0	0	38	0	SPIRE2	intronic	NA
RCC_T3--5	chr16:89935860	A	G	22	0.182	18	64.000	10.754	4	68.750	3.202	18	4	SPIRE2	intronic	NA
RCC_T3--6	chr16:89935860	A	NA	43	0	43	66.209	8.408	0	0	0	43	0	SPIRE2	intronic	NA
RCC_T3--7	chr16:89935860	A	NA	43	0	43	68.512	3.948	0	0	0	43	0	SPIRE2	intronic	NA
RCC_T3--8	chr16:89935860	A	NA	46	0	46	66.304	8.382	0	0	0	46	0	SPIRE2	intronic	NA
RCC_T3--GL	chr16:89935860	A	NA	51	0	51	67.039	6.083	0	0	0	51	0	SPIRE2	intronic	NA
RCC_T3--1	chr16:89977697	T	NA	19	0	19	66.105	5.744	0	0	0	19	0	TCF25	UTR3	NA
RCC_T3--2	chr16:89977697	T	NA	32	0	32	66.094	6.367	0	0	0	32	0	TCF25	UTR3	NA
RCC_T3--3	chr16:89977697	T	NA	30	0	30	65.867	7.464	0	0	0	30	0	TCF25	UTR3	NA
RCC_T3--4	chr16:89977697	T	NA	37	0	37	68.054	3.621	0	0	0	37	0	TCF25	UTR3	NA
RCC_T3--5	chr16:89977697	T	C	27	0.037	26	67.192	3.847	1	63.000	0.000	26	1	TCF25	UTR3	NA
RCC_T3--6	chr16:89977697	T	C	23	0.174	19	64.211	7.976	4	66.750	4.272	19	4	TCF25	UTR3	NA
RCC_T3--7	chr16:89977697	T	NA	26	0	26	65.846	6.201	0	0	0	26	0	TCF25	UTR3	NA
RCC_T3--8	chr16:89977697	T	NA	20	0	20	65.800	3.928	0	0	0	20	0	TCF25	UTR3	NA
RCC_T3--GL	chr16:89977697	T	NA	41	0	41	66.195	3.400	0	0	0	41	0	TCF25	UTR3	NA
RCC_T3--1	chr17:1617280	C	T	24	0.125	20	65.600	5.443	3	69.667	4.041	20	3	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--2	chr17:1617280	C	NA	27	0	27	66.963	4.887	0	0	0	27	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--3	chr17:1617280	C	NA	25	0	25	67.240	4.362	0	0	0	25	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--4	chr17:1617280	C	NA	27	0	27	67.148	4.936	0	0	0	27	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--5	chr17:1617280	C	NA	16	0	16	66.500	9.920	0	0	0	16	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--6	chr17:1617280	C	NA	22	0	22	67.773	4.242	0	0	0	22	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--7	chr17:1617280	C	NA	25	0	25	64.960	10.382	0	0	0	25	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--8	chr17:1617280	C	NA	31	0	31	67.806	6.258	0	0	0	31	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--GL	chr17:1617280	C	NA	44	0	43	66.163	6.722	0	0	0	43	0	MIR22,MIR22HG	ncRNA_exonic	NA
RCC_T3--1	chr17:1640945	G	NA	32	0	32	63.531	6.164	0	0	0	32	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:1640945	G	NA	27	0	27	65.370	4.700	0	0	0	27	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:1640945	G	NA	37	0	37	62.351	10.879	0	0	0	37	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:1640945	G	NA	22	0	22	66.545	4.887	0	0	0	22	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:1640945	G	NA	32	0	32	64.875	7.674	0	0	0	32	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:1640945	G	NA	45	0	45	64.244	9.696	0	0	0	45	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:1640945	G	NA	34	0	33	66.091	7.082	0	0	0	33	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:1640945	G	A	28	0.143	24	65.792	7.108	4	60.250	15.798	24	4	WDR81	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:1640945	G	NA	33	0	33	66.848	3.280	0	0	0	33	0	WDR81	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:17722521	C	T	37	0.108	33	64.030	11.601	4	65.500	0.577	33	4	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:17722521	C	NA	57	0	57	65.737	6.351	0	0	0	57	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:17722521	C	NA	66	0	66	65.136	7.329	0	0	0	66	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:17722521	C	NA	57	0	57	66.351	6.449	0	0	0	57	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:17722521	C	NA	55	0	55	67.382	5.502	0	0	0	55	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:17722521	C	NA	61	0	61	65.066	7.507	0	0	0	61	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:17722521	C	NA	76	0	76	66.355	7.119	0	0	0	76	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:17722521	C	NA	97	0	97	66.247	7.049	0	0	0	97	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:17722521	C	NA	65	0	65	62.954	10.102	0	0	0	65	0	SREBF1	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:18916735	G	NA	43	0	43	66.605	6.637	0	0	0	43	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:18916735	G	NA	44	0	44	66.773	6.030	0	0	0	44	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:18916735	G	A	37	0.108	33	66.939	5.226	4	63.500	7.506	33	4	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:18916735	G	NA	42	0	42	63.548	9.334	0	0	0	42	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:18916735	G	NA	40	0	40	63.600	8.403	0	0	0	40	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:18916735	G	NA	46	0	46	62.870	9.628	0	0	0	46	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:18916735	G	NA	50	0	49	65.653	7.218	0	0	0	49	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:18916735	G	NA	57	0	57	65.123	6.869	0	0	0	57	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:18916735	G	NA	48	0	48	65.500	6.219	0	0	0	48	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:26207164	A	NA	25	0	25	66.320	7.636	0	0	0	25	0	LYRM9	intronic	NA
RCC_T3--2	chr17:26207164	A	NA	34	0	34	66.500	4.364	0	0	0	34	0	LYRM9	intronic	NA
RCC_T3--3	chr17:26207164	A	NA	42	0	42	67.167	7.503	0	0	0	42	0	LYRM9	intronic	NA
RCC_T3--4	chr17:26207164	A	NA	47	0	47	66.021	7.637	0	0	0	47	0	LYRM9	intronic	NA
RCC_T3--5	chr17:26207164	A	NA	28	0	28	63.000	9.858	0	0	0	28	0	LYRM9	intronic	NA
RCC_T3--6	chr17:26207164	A	G	27	0.148	23	63.870	10.029	4	63.500	3.000	23	4	LYRM9	intronic	NA
RCC_T3--7	chr17:26207164	A	NA	55	0	55	66.109	6.710	0	0	0	55	0	LYRM9	intronic	NA
RCC_T3--8	chr17:26207164	A	NA	36	0	36	67.194	5.203	0	0	0	36	0	LYRM9	intronic	NA
RCC_T3--GL	chr17:26207164	A	NA	44	0	44	66.932	6.638	0	0	0	44	0	LYRM9	intronic	NA
RCC_T3--1	chr17:26603161	G	NA	31	0	31	68.581	2.766	0	0	0	31	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--2	chr17:26603161	G	NA	37	0	37	68.216	6.901	0	0	0	37	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--3	chr17:26603161	G	T	31	0.129	27	67.519	7.250	4	66.250	2.872	27	4	KRT18P55	ncRNA_exonic	NA
RCC_T3--4	chr17:26603161	G	T	30	0.033	29	66.862	7.453	1	72.000	0.000	29	1	KRT18P55	ncRNA_exonic	NA
RCC_T3--5	chr17:26603161	G	NA	41	0	41	66.463	5.980	0	0	0	41	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--6	chr17:26603161	G	T	40	0.025	39	67.231	4.585	1	33.000	0.000	39	1	KRT18P55	ncRNA_exonic	NA
RCC_T3--7	chr17:26603161	G	NA	21	0	21	67.905	2.773	0	0	0	21	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--8	chr17:26603161	G	NA	27	0	27	67.481	5.767	0	0	0	27	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--GL	chr17:26603161	G	NA	35	0	35	66.686	5.155	0	0	0	35	0	KRT18P55	ncRNA_exonic	NA
RCC_T3--1	chr17:26692224	A	G	31	0.032	30	65.033	6.713	1	62.000	0.000	30	1	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:26692224	A	G	52	0.135	45	65.156	5.877	7	63.143	4.375	45	7	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:26692224	A	G	46	0.043	44	64.932	6.311	2	66.000	0.000	44	2	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:26692224	A	G	32	0.156	27	66.222	6.681	5	64.200	2.490	27	5	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:26692224	A	NA	49	0	48	65.021	4.884	0	0	0	48	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:26692224	A	G	43	0.047	41	65.098	5.238	2	64.000	2.828	41	2	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:26692224	A	NA	55	0	55	67.145	4.584	0	0	0	55	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:26692224	A	NA	62	0	61	64.754	7.595	0	0	0	61	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:26692224	A	NA	48	0	48	65.688	7.807	0	0	0	48	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:26888544	T	NA	26	0	26	64.615	6.518	0	0	0	26	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:26888544	T	NA	30	0	30	66.200	8.401	0	0	0	30	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:26888544	T	NA	43	0	43	66.395	5.762	0	0	0	43	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:26888544	T	NA	30	0	30	67.567	3.901	0	0	0	30	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:26888544	T	NA	17	0	17	64.824	9.914	0	0	0	17	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:26888544	T	NA	30	0	30	60.567	12.757	0	0	0	30	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:26888544	T	C	31	0.129	27	67.778	3.876	4	67.750	3.500	27	4	PIGS	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:26888544	T	NA	37	0	37	66.189	7.464	0	0	0	37	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:26888544	T	NA	39	0	39	64.564	8.068	0	0	0	39	0	PIGS	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:27434245	A	NA	50	0	49	60.571	8.173	0	0	0	49	0	MYO18A	intronic	NA
RCC_T3--2	chr17:27434245	A	G	64	0.016	61	62.623	7.401	1	33.000	0.000	61	1	MYO18A	intronic	NA
RCC_T3--3	chr17:27434245	A	NA	94	0	90	59.967	8.721	0	0	0	90	0	MYO18A	intronic	NA
RCC_T3--4	chr17:27434245	A	G	51	0.020	49	60.796	8.183	1	56.000	0.000	49	1	MYO18A	intronic	NA
RCC_T3--5	chr17:27434245	A	G	60	0.100	53	58.642	9.446	6	63.833	2.994	53	6	MYO18A	intronic	NA
RCC_T3--6	chr17:27434245	A	G	69	0.014	67	58.537	10.044	1	37.000	0.000	67	1	MYO18A	intronic	NA
RCC_T3--7	chr17:27434245	A	NA	49	0	48	57.354	10.952	0	0	0	48	0	MYO18A	intronic	NA
RCC_T3--8	chr17:27434245	A	NA	70	0	69	61.348	7.553	0	0	0	69	0	MYO18A	intronic	NA
RCC_T3--GL	chr17:27434245	A	NA	60	0	57	58.912	9.538	0	0	0	57	0	MYO18A	intronic	NA
RCC_T3--1	chr17:29664410	T	NA	76	0	76	68.513	4.045	0	0	0	76	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:29664410	T	NA	95	0	95	68.663	3.376	0	0	0	95	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:29664410	T	NA	100	0	100	68.320	4.316	0	0	0	100	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:29664410	T	NA	90	0	90	69.656	2.558	0	0	0	90	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:29664410	T	A	57	0.105	51	65.941	7.870	6	67.000	4.195	51	6	NF1	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:29664410	T	NA	87	0	87	68.080	4.713	0	0	0	87	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:29664410	T	NA	98	0	98	67.939	5.264	0	0	0	98	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:29664410	T	NA	88	0	87	68.943	3.898	0	0	0	87	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:29664410	T	NA	115	0	115	67.565	4.722	0	0	0	115	0	NF1	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:30228497	C	NA	19	0	19	64.526	8.834	0	0	0	19	0	UTP6	intronic	NA
RCC_T3--2	chr17:30228497	C	T	29	0.138	25	66.360	5.552	4	66.500	6.351	25	4	UTP6	intronic	NA
RCC_T3--3	chr17:30228497	C	NA	37	0	37	66.000	6.823	0	0	0	37	0	UTP6	intronic	NA
RCC_T3--4	chr17:30228497	C	NA	38	0	38	66.263	6.246	0	0	0	38	0	UTP6	intronic	NA
RCC_T3--5	chr17:30228497	C	NA	27	0	27	66.148	7.650	0	0	0	27	0	UTP6	intronic	NA
RCC_T3--6	chr17:30228497	C	NA	19	0	19	66.421	8.802	0	0	0	19	0	UTP6	intronic	NA
RCC_T3--7	chr17:30228497	C	NA	36	0	36	64.667	9.417	0	0	0	36	0	UTP6	intronic	NA
RCC_T3--8	chr17:30228497	C	NA	42	0	42	66.857	7.223	0	0	0	42	0	UTP6	intronic	NA
RCC_T3--GL	chr17:30228497	C	NA	44	0	44	65.000	6.481	0	0	0	44	0	UTP6	intronic	NA
RCC_T3--1	chr17:33466155	T	G	18	0.056	17	64.412	5.512	1	38.000	0.000	17	1	NLE1	intronic	NA
RCC_T3--2	chr17:33466155	T	NA	20	0	19	64.526	8.222	0	0	0	19	0	NLE1	intronic	NA
RCC_T3--3	chr17:33466155	T	G	14	0.071	13	61.077	10.136	1	55.000	0.000	13	1	NLE1	intronic	NA
RCC_T3--4	chr17:33466155	T	NA	21	0	21	63.952	6.193	0	0	0	21	0	NLE1	intronic	NA
RCC_T3--5	chr17:33466155	T	NA	14	0	14	57.286	12.749	0	0	0	14	0	NLE1	intronic	NA
RCC_T3--6	chr17:33466155	T	NA	11	0	11	65.273	3.379	0	0	0	11	0	NLE1	intronic	NA
RCC_T3--7	chr17:33466155	T	NA	19	0	19	61.737	9.011	0	0	0	19	0	NLE1	intronic	NA
RCC_T3--8	chr17:33466155	T	G	20	0.200	16	61.625	8.555	4	39.500	1.000	16	4	NLE1	intronic	NA
RCC_T3--GL	chr17:33466155	T	NA	36	0	35	62.600	7.244	0	0	0	35	0	NLE1	intronic	NA
RCC_T3--1	chr17:33466199	A	NA	26	0	25	68.520	3.809	0	0	0	25	0	NLE1	intronic	NA
RCC_T3--2	chr17:33466199	A	NA	41	0	41	68.829	3.619	0	0	0	41	0	NLE1	intronic	NA
RCC_T3--3	chr17:33466199	A	NA	26	0	25	67.520	4.302	0	0	0	25	0	NLE1	intronic	NA
RCC_T3--4	chr17:33466199	A	NA	49	0	49	68.592	3.889	0	0	0	49	0	NLE1	intronic	NA
RCC_T3--5	chr17:33466199	A	NA	25	0	25	65.880	7.780	0	0	0	25	0	NLE1	intronic	NA
RCC_T3--6	chr17:33466199	A	G	27	0.148	23	68.522	3.232	4	70.000	1.826	23	4	NLE1	intronic	NA
RCC_T3--7	chr17:33466199	A	NA	38	0	38	66.921	6.188	0	0	0	38	0	NLE1	intronic	NA
RCC_T3--8	chr17:33466199	A	NA	35	0	35	65.086	9.366	0	0	0	35	0	NLE1	intronic	NA
RCC_T3--GL	chr17:33466199	A	NA	41	0	41	66.683	6.802	0	0	0	41	0	NLE1	intronic	NA
RCC_T3--1	chr17:34001458	C	NA	20	0	20	67.150	5.631	0	0	0	20	0	AP2B1	intronic	NA
RCC_T3--2	chr17:34001458	C	NA	49	0	49	67.122	5.570	0	0	0	49	0	AP2B1	intronic	NA
RCC_T3--3	chr17:34001458	C	A	31	0.161	26	66.577	5.163	5	64.800	8.556	26	5	AP2B1	intronic	NA
RCC_T3--4	chr17:34001458	C	NA	41	0	41	66.341	8.160	0	0	0	41	0	AP2B1	intronic	NA
RCC_T3--5	chr17:34001458	C	NA	29	0	29	65.310	7.649	0	0	0	29	0	AP2B1	intronic	NA
RCC_T3--6	chr17:34001458	C	NA	33	0	33	66.636	5.320	0	0	0	33	0	AP2B1	intronic	NA
RCC_T3--7	chr17:34001458	C	NA	51	0	51	66.725	7.640	0	0	0	51	0	AP2B1	intronic	NA
RCC_T3--8	chr17:34001458	C	NA	41	0	41	67.268	5.805	0	0	0	41	0	AP2B1	intronic	NA
RCC_T3--GL	chr17:34001458	C	NA	53	0	53	65.660	6.983	0	0	0	53	0	AP2B1	intronic	NA
RCC_T3--1	chr17:3477176	C	G	49	0.020	48	58.312	12.075	1	36.000	0.000	48	1	TRPV1	exonic	synonymous_SNV
RCC_T3--2	chr17:3477176	C	G	34	0.206	27	55.889	15.032	7	36.571	9.449	27	7	TRPV1	exonic	synonymous_SNV
RCC_T3--3	chr17:3477176	C	G	35	0.057	33	54.182	14.312	2	38.000	7.071	33	2	TRPV1	exonic	synonymous_SNV
RCC_T3--4	chr17:3477176	C	G	48	0.021	46	55.739	13.190	1	43.000	0.000	46	1	TRPV1	exonic	synonymous_SNV
RCC_T3--5	chr17:3477176	C	G	28	0.107	24	52.917	14.587	3	34.000	1.732	24	3	TRPV1	exonic	synonymous_SNV
RCC_T3--6	chr17:3477176	C	NA	22	0	22	56.045	12.960	0	0	0	22	0	TRPV1	exonic	synonymous_SNV
RCC_T3--7	chr17:3477176	C	G	33	0.091	30	57.300	12.485	3	39.333	8.505	30	3	TRPV1	exonic	synonymous_SNV
RCC_T3--8	chr17:3477176	C	G	48	0.062	45	57.267	13.575	3	36.333	5.774	45	3	TRPV1	exonic	synonymous_SNV
RCC_T3--GL	chr17:3477176	C	NA	44	0	44	49.045	15.005	0	0	0	44	0	TRPV1	exonic	synonymous_SNV
RCC_T3--1	chr17:3495378	G	A	16	0.250	12	63.667	6.155	4	65.500	0.577	12	4	TRPV1	exonic	synonymous_SNV
RCC_T3--2	chr17:3495378	G	NA	24	0	24	66.667	5.411	0	0	0	24	0	TRPV1	exonic	synonymous_SNV
RCC_T3--3	chr17:3495378	G	A	32	0.031	31	64.581	7.628	1	70.000	0.000	31	1	TRPV1	exonic	synonymous_SNV
RCC_T3--4	chr17:3495378	G	NA	37	0	37	63.703	7.475	0	0	0	37	0	TRPV1	exonic	synonymous_SNV
RCC_T3--5	chr17:3495378	G	NA	26	0	26	65.462	6.482	0	0	0	26	0	TRPV1	exonic	synonymous_SNV
RCC_T3--6	chr17:3495378	G	NA	30	0	30	62.567	7.030	0	0	0	30	0	TRPV1	exonic	synonymous_SNV
RCC_T3--7	chr17:3495378	G	NA	24	0	24	65.375	5.273	0	0	0	24	0	TRPV1	exonic	synonymous_SNV
RCC_T3--8	chr17:3495378	G	NA	29	0	29	66.103	4.828	0	0	0	29	0	TRPV1	exonic	synonymous_SNV
RCC_T3--GL	chr17:3495378	G	NA	38	0	38	61.842	8.800	0	0	0	38	0	TRPV1	exonic	synonymous_SNV
RCC_T3--1	chr17:37991933	G	NA	40	0	40	67.000	6.085	0	0	0	40	0	IKZF3	intronic	NA
RCC_T3--2	chr17:37991933	G	NA	43	0	43	68.558	2.873	0	0	0	43	0	IKZF3	intronic	NA
RCC_T3--3	chr17:37991933	G	NA	46	0	46	65.565	7.539	0	0	0	46	0	IKZF3	intronic	NA
RCC_T3--4	chr17:37991933	G	NA	48	0	48	68.562	3.162	0	0	0	48	0	IKZF3	intronic	NA
RCC_T3--5	chr17:37991933	G	A	46	0.130	40	66.700	6.757	6	67.500	1.871	40	6	IKZF3	intronic	NA
RCC_T3--6	chr17:37991933	G	NA	36	0	36	66.667	6.928	0	0	0	36	0	IKZF3	intronic	NA
RCC_T3--7	chr17:37991933	G	NA	31	0	31	68.161	2.968	0	0	0	31	0	IKZF3	intronic	NA
RCC_T3--8	chr17:37991933	G	NA	35	0	35	68.714	2.663	0	0	0	35	0	IKZF3	intronic	NA
RCC_T3--GL	chr17:37991933	G	NA	53	0	53	67.302	6.536	0	0	0	53	0	IKZF3	intronic	NA
RCC_T3--1	chr17:38249449	G	NA	42	0	42	67.810	6.122	0	0	0	42	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:38249449	G	NA	73	0	73	64.096	8.927	0	0	0	73	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:38249449	G	NA	52	0	52	64.346	7.654	0	0	0	52	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:38249449	G	NA	64	0	63	65.365	5.776	0	0	0	63	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:38249449	G	A	30	0.133	26	62.577	9.153	4	61.250	8.057	26	4	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:38249449	G	NA	59	0	59	62.119	9.713	0	0	0	59	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:38249449	G	NA	50	0	50	66.060	7.271	0	0	0	50	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:38249449	G	NA	47	0	47	65.000	6.659	0	0	0	47	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:38249449	G	NA	51	0	51	64.294	9.403	0	0	0	51	0	NR1D1,THRA	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:38554720	C	A	22	0.136	18	70.333	2.169	3	70.667	2.309	18	3	TOP2A	intronic	NA
RCC_T3--2	chr17:38554720	C	NA	40	0	40	68.425	5.430	0	0	0	40	0	TOP2A	intronic	NA
RCC_T3--3	chr17:38554720	C	NA	34	0	34	68.765	3.893	0	0	0	34	0	TOP2A	intronic	NA
RCC_T3--4	chr17:38554720	C	NA	35	0	35	68.286	4.315	0	0	0	35	0	TOP2A	intronic	NA
RCC_T3--5	chr17:38554720	C	NA	23	0	23	67.217	4.748	0	0	0	23	0	TOP2A	intronic	NA
RCC_T3--6	chr17:38554720	C	NA	32	0	32	67.312	6.337	0	0	0	32	0	TOP2A	intronic	NA
RCC_T3--7	chr17:38554720	C	NA	27	0	27	68.741	4.833	0	0	0	27	0	TOP2A	intronic	NA
RCC_T3--8	chr17:38554720	C	NA	37	0	37	69.054	3.965	0	0	0	37	0	TOP2A	intronic	NA
RCC_T3--GL	chr17:38554720	C	NA	40	0	40	67.400	6.570	0	0	0	40	0	TOP2A	intronic	NA
RCC_T3--1	chr17:38634710	C	NA	25	0	25	63.680	8.040	0	0	0	25	0	TNS4	intronic	NA
RCC_T3--2	chr17:38634710	C	NA	22	0	22	67.091	4.659	0	0	0	22	0	TNS4	intronic	NA
RCC_T3--3	chr17:38634710	C	NA	26	0	26	65.154	4.249	0	0	0	26	0	TNS4	intronic	NA
RCC_T3--4	chr17:38634710	C	NA	32	0	32	64.781	6.349	0	0	0	32	0	TNS4	intronic	NA
RCC_T3--5	chr17:38634710	C	NA	27	0	27	66.333	4.438	0	0	0	27	0	TNS4	intronic	NA
RCC_T3--6	chr17:38634710	C	A	13	0.231	10	65.200	3.910	3	66.667	0.577	10	3	TNS4	intronic	NA
RCC_T3--7	chr17:38634710	C	NA	21	0	21	64.714	4.440	0	0	0	21	0	TNS4	intronic	NA
RCC_T3--8	chr17:38634710	C	NA	18	0	18	67.389	4.245	0	0	0	18	0	TNS4	intronic	NA
RCC_T3--GL	chr17:38634710	C	NA	33	0	33	61.455	8.140	0	0	0	33	0	TNS4	intronic	NA
RCC_T3--1	chr17:39197086	C	NA	42	0	42	66.786	6.087	0	0	0	42	0	KRTAP1-1	UTR3	NA
RCC_T3--2	chr17:39197086	C	NA	49	0	49	69.286	3.317	0	0	0	49	0	KRTAP1-1	UTR3	NA
RCC_T3--3	chr17:39197086	C	NA	34	0	34	66.765	4.300	0	0	0	34	0	KRTAP1-1	UTR3	NA
RCC_T3--4	chr17:39197086	C	A	61	0.131	53	69.132	3.138	8	69.125	2.031	53	8	KRTAP1-1	UTR3	NA
RCC_T3--5	chr17:39197086	C	NA	51	0	51	68.804	4.104	0	0	0	51	0	KRTAP1-1	UTR3	NA
RCC_T3--6	chr17:39197086	C	NA	46	0	46	68.391	5.946	0	0	0	46	0	KRTAP1-1	UTR3	NA
RCC_T3--7	chr17:39197086	C	NA	49	0	49	69.143	3.686	0	0	0	49	0	KRTAP1-1	UTR3	NA
RCC_T3--8	chr17:39197086	C	NA	49	0	49	68.918	3.168	0	0	0	49	0	KRTAP1-1	UTR3	NA
RCC_T3--GL	chr17:39197086	C	NA	40	0	40	66.875	7.046	0	0	0	40	0	KRTAP1-1	UTR3	NA
RCC_T3--1	chr17:39620259	C	NA	21	0	21	68.905	3.506	0	0	0	21	0	KRT32	intronic	NA
RCC_T3--2	chr17:39620259	C	T	40	0.200	32	67.969	3.412	8	69.750	3.615	32	8	KRT32	intronic	NA
RCC_T3--3	chr17:39620259	C	NA	21	0	21	66.571	3.749	0	0	0	21	0	KRT32	intronic	NA
RCC_T3--4	chr17:39620259	C	NA	32	0	32	68.125	4.086	0	0	0	32	0	KRT32	intronic	NA
RCC_T3--5	chr17:39620259	C	NA	12	0	12	63.500	10.783	0	0	0	12	0	KRT32	intronic	NA
RCC_T3--6	chr17:39620259	C	NA	22	0	22	67.409	3.699	0	0	0	22	0	KRT32	intronic	NA
RCC_T3--7	chr17:39620259	C	NA	24	0	24	68.042	3.381	0	0	0	24	0	KRT32	intronic	NA
RCC_T3--8	chr17:39620259	C	NA	25	0	25	67.480	7.869	0	0	0	25	0	KRT32	intronic	NA
RCC_T3--GL	chr17:39620259	C	NA	46	0	46	67.522	6.719	0	0	0	46	0	KRT32	intronic	NA
RCC_T3--1	chr17:39973289	C	NA	28	0	28	68.964	2.472	0	0	0	28	0	FKBP10	intronic	NA
RCC_T3--2	chr17:39973289	C	A	46	0.130	40	68.100	3.928	6	65.000	1.673	40	6	FKBP10	intronic	NA
RCC_T3--3	chr17:39973289	C	NA	39	0	39	64.718	7.200	0	0	0	39	0	FKBP10	intronic	NA
RCC_T3--4	chr17:39973289	C	NA	28	0	28	66.179	4.892	0	0	0	28	0	FKBP10	intronic	NA
RCC_T3--5	chr17:39973289	C	NA	32	0	32	62.594	10.494	0	0	0	32	0	FKBP10	intronic	NA
RCC_T3--6	chr17:39973289	C	NA	21	0	21	60.762	12.421	0	0	0	21	0	FKBP10	intronic	NA
RCC_T3--7	chr17:39973289	C	NA	22	0	22	64.182	8.953	0	0	0	22	0	FKBP10	intronic	NA
RCC_T3--8	chr17:39973289	C	NA	44	0	44	67.045	4.248	0	0	0	44	0	FKBP10	intronic	NA
RCC_T3--GL	chr17:39973289	C	NA	36	0	36	66.472	7.655	0	0	0	36	0	FKBP10	intronic	NA
RCC_T3--1	chr17:40447698	A	NA	33	0	33	66.818	4.978	0	0	0	33	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:40447698	A	NA	45	0	45	65.689	9.544	0	0	0	45	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:40447698	A	NA	47	0	47	66.064	7.872	0	0	0	47	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:40447698	A	NA	49	0	49	67.592	5.549	0	0	0	49	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:40447698	A	T	31	0.194	25	66.640	6.130	6	67.167	3.656	25	6	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:40447698	A	NA	39	0	39	67.436	4.893	0	0	0	39	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:40447698	A	NA	47	0	47	66.234	7.780	0	0	0	47	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:40447698	A	NA	31	0	31	65.903	5.991	0	0	0	31	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:40447698	A	NA	38	0	38	65.000	9.532	0	0	0	38	0	STAT5A	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:41959616	C	NA	34	0	34	65.206	6.813	0	0	0	34	0	MPP2	intronic	NA
RCC_T3--2	chr17:41959616	C	NA	61	0	61	66.770	4.734	0	0	0	61	0	MPP2	intronic	NA
RCC_T3--3	chr17:41959616	C	T	35	0.114	30	67.600	2.621	4	63.000	4.243	30	4	MPP2	intronic	NA
RCC_T3--4	chr17:41959616	C	NA	46	0	46	64.783	9.503	0	0	0	46	0	MPP2	intronic	NA
RCC_T3--5	chr17:41959616	C	NA	44	0	44	65.432	7.774	0	0	0	44	0	MPP2	intronic	NA
RCC_T3--6	chr17:41959616	C	NA	43	0	43	63.372	8.307	0	0	0	43	0	MPP2	intronic	NA
RCC_T3--7	chr17:41959616	C	NA	34	0	34	64.206	7.587	0	0	0	34	0	MPP2	intronic	NA
RCC_T3--8	chr17:41959616	C	NA	40	0	39	66.692	3.961	0	0	0	39	0	MPP2	intronic	NA
RCC_T3--GL	chr17:41959616	C	NA	56	0	56	63.500	9.315	0	0	0	56	0	MPP2	intronic	NA
RCC_T3--1	chr17:42003564	G	T	133	0.045	127	66.906	5.780	6	69.333	3.077	127	6	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--2	chr17:42003564	G	NA	147	0	147	66.946	6.518	0	0	0	147	0	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--3	chr17:42003564	G	T	190	0.032	183	66.497	5.758	6	67.000	4.147	183	6	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--4	chr17:42003564	G	T	201	0.005	198	67.086	5.563	1	68.000	0.000	198	1	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--5	chr17:42003564	G	NA	189	0	189	65.984	6.593	0	0	0	189	0	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--6	chr17:42003564	G	T	162	0.012	160	66.581	6.229	2	48.500	14.849	160	2	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--7	chr17:42003564	G	T	208	0.197	166	65.964	7.574	41	66.024	6.850	166	41	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--8	chr17:42003564	G	T	179	0.011	177	66.418	6.132	2	69.000	4.243	177	2	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--GL	chr17:42003564	G	NA	166	0	166	65.940	6.195	0	0	0	166	0	FAM215A(dist=8209),PPY(dist=14608)	intergenic	NA
RCC_T3--1	chr17:42828067	C	A	38	0.026	37	68.135	5.917	1	41.000	0.000	37	1	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:42828067	C	NA	48	0	48	66.896	6.508	0	0	0	48	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:42828067	C	NA	57	0	57	66.316	5.289	0	0	0	57	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:42828067	C	A	74	0.108	66	66.333	7.141	8	55.750	14.469	66	8	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:42828067	C	NA	51	0	51	65.745	7.008	0	0	0	51	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:42828067	C	NA	52	0	52	65.923	8.145	0	0	0	52	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:42828067	C	NA	60	0	60	65.300	8.975	0	0	0	60	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:42828067	C	NA	60	0	60	67.117	7.195	0	0	0	60	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:42828067	C	NA	49	0	49	64.163	10.315	0	0	0	49	0	DBF4B	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:43214154	C	NA	23	0	23	66.261	4.760	0	0	0	23	0	ACBD4	intronic	NA
RCC_T3--2	chr17:43214154	C	NA	38	0	37	66.054	6.231	0	0	0	37	0	ACBD4	intronic	NA
RCC_T3--3	chr17:43214154	C	NA	43	0	43	66.698	6.155	0	0	0	43	0	ACBD4	intronic	NA
RCC_T3--4	chr17:43214154	C	T	34	0.176	28	68.107	3.725	6	68.000	3.742	28	6	ACBD4	intronic	NA
RCC_T3--5	chr17:43214154	C	NA	37	0	37	65.162	8.019	0	0	0	37	0	ACBD4	intronic	NA
RCC_T3--6	chr17:43214154	C	NA	32	0	32	66.062	6.169	0	0	0	32	0	ACBD4	intronic	NA
RCC_T3--7	chr17:43214154	C	NA	42	0	42	64.357	6.677	0	0	0	42	0	ACBD4	intronic	NA
RCC_T3--8	chr17:43214154	C	NA	55	0	55	66.018	4.503	0	0	0	55	0	ACBD4	intronic	NA
RCC_T3--GL	chr17:43214154	C	NA	38	0	38	61.868	11.031	0	0	0	38	0	ACBD4	intronic	NA
RCC_T3--1	chr17:4389584	T	NA	30	0	30	64.533	8.986	0	0	0	30	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:4389584	T	NA	40	0	40	65.175	4.551	0	0	0	40	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:4389584	T	NA	42	0	41	63.415	7.788	0	0	0	41	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:4389584	T	NA	26	0	26	61.462	11.563	0	0	0	26	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:4389584	T	NA	38	0	38	64.789	5.408	0	0	0	38	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:4389584	T	NA	24	0	24	63.125	9.205	0	0	0	24	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:4389584	T	A	35	0.143	30	62.733	9.745	5	59.200	11.476	30	5	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:4389584	T	NA	26	0	26	60.462	11.987	0	0	0	26	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:4389584	T	NA	34	0	34	63.853	7.576	0	0	0	34	0	SPNS3	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:4461681	A	NA	24	0	24	67.875	2.473	0	0	0	24	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:4461681	A	NA	37	0	37	65.649	4.290	0	0	0	37	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:4461681	A	NA	37	0	37	67.081	4.374	0	0	0	37	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:4461681	A	T	25	0.160	21	65.381	8.570	4	68.250	3.862	21	4	GGT6	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:4461681	A	NA	22	0	22	65.273	7.265	0	0	0	22	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:4461681	A	NA	29	0	29	66.759	3.988	0	0	0	29	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:4461681	A	T	37	0.027	36	65.778	7.522	1	49.000	0.000	36	1	GGT6	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:4461681	A	NA	19	0	19	64.895	6.991	0	0	0	19	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:4461681	A	NA	40	0	40	63.950	10.483	0	0	0	40	0	GGT6	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:4496464	G	NA	27	0	27	65.889	5.487	0	0	0	27	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:4496464	G	NA	45	0	45	66.622	4.233	0	0	0	45	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:4496464	G	NA	43	0	43	64.488	7.417	0	0	0	43	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:4496464	G	A	48	0.125	42	66.905	5.556	6	65.000	1.789	42	6	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:4496464	G	NA	34	0	34	64.765	8.890	0	0	0	34	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:4496464	G	NA	38	0	38	63.368	9.000	0	0	0	38	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:4496464	G	NA	43	0	43	65.860	4.539	0	0	0	43	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:4496464	G	NA	50	0	50	65.820	6.294	0	0	0	50	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:4496464	G	NA	48	0	48	63.875	8.084	0	0	0	48	0	SMTNL2	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:4535305	A	NA	24	0	24	66.208	4.995	0	0	0	24	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:4535305	A	NA	49	0	49	65.204	6.901	0	0	0	49	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:4535305	A	NA	38	0	38	62.316	8.948	0	0	0	38	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:4535305	A	NA	43	0	43	66.279	7.695	0	0	0	43	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:4535305	A	G	37	0.162	31	64.806	7.657	6	50.833	18.584	31	6	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:4535305	A	NA	43	0	43	63.744	8.937	0	0	0	43	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:4535305	A	NA	46	0	46	63.587	7.538	0	0	0	46	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:4535305	A	NA	35	0	35	63.771	8.822	0	0	0	35	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:4535305	A	NA	50	0	50	62.520	9.592	0	0	0	50	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:4535560	T	NA	39	0	39	66.487	5.281	0	0	0	39	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:4535560	T	NA	49	0	49	67.776	3.954	0	0	0	49	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:4535560	T	A	48	0.125	42	67.119	3.971	6	64.667	4.367	42	6	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:4535560	T	NA	41	0	41	66.317	4.180	0	0	0	41	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:4535560	T	NA	61	0	60	63.933	8.316	0	0	0	60	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:4535560	T	NA	37	0	37	66.595	3.427	0	0	0	37	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:4535560	T	NA	47	0	46	67.239	5.109	0	0	0	46	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:4535560	T	NA	46	0	45	64.889	8.462	0	0	0	45	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:4535560	T	NA	45	0	45	63.200	9.576	0	0	0	45	0	ALOX15	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:45891921	C	NA	35	0	35	66.000	7.227	0	0	0	35	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:45891921	C	NA	61	0	61	66.836	5.119	0	0	0	61	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:45891921	C	NA	58	0	58	65.759	5.998	0	0	0	58	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:45891921	C	NA	49	0	49	64.918	7.681	0	0	0	49	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:45891921	C	A	40	0.200	32	66.344	5.592	8	63.500	3.251	32	8	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:45891921	C	NA	40	0	40	66.850	6.225	0	0	0	40	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:45891921	C	NA	42	0	42	66.810	4.930	0	0	0	42	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:45891921	C	NA	42	0	42	66.952	4.108	0	0	0	42	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:45891921	C	NA	49	0	49	63.531	8.658	0	0	0	49	0	OSBPL7	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:46670670	G	NA	30	0	30	64.667	4.559	0	0	0	30	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:46670670	G	NA	34	0	34	66.176	6.640	0	0	0	34	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:46670670	G	T	36	0.111	32	66.656	6.587	4	68.000	2.944	32	4	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:46670670	G	NA	64	0	64	64.125	5.591	0	0	0	64	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:46670670	G	NA	36	0	36	65.806	4.659	0	0	0	36	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:46670670	G	NA	56	0	56	63.946	6.357	0	0	0	56	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:46670670	G	NA	49	0	49	65.306	6.305	0	0	0	49	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:46670670	G	NA	47	0	47	66.106	5.650	0	0	0	47	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:46670670	G	NA	52	0	52	64.500	8.224	0	0	0	52	0	HOXB5	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:56448195	C	NA	20	0	20	66.950	6.436	0	0	0	20	0	RNF43	intronic	NA
RCC_T3--2	chr17:56448195	C	NA	35	0	35	66.286	5.486	0	0	0	35	0	RNF43	intronic	NA
RCC_T3--3	chr17:56448195	C	NA	41	0	41	68.366	3.679	0	0	0	41	0	RNF43	intronic	NA
RCC_T3--4	chr17:56448195	C	NA	31	0	31	66.871	5.470	0	0	0	31	0	RNF43	intronic	NA
RCC_T3--5	chr17:56448195	C	NA	36	0	36	66.806	4.132	0	0	0	36	0	RNF43	intronic	NA
RCC_T3--6	chr17:56448195	C	NA	36	0	36	67.167	7.512	0	0	0	36	0	RNF43	intronic	NA
RCC_T3--7	chr17:56448195	C	A	34	0.118	30	65.200	7.989	4	67.000	3.559	30	4	RNF43	intronic	NA
RCC_T3--8	chr17:56448195	C	NA	35	0	35	66.600	4.936	0	0	0	35	0	RNF43	intronic	NA
RCC_T3--GL	chr17:56448195	C	NA	34	0	34	64.941	7.114	0	0	0	34	0	RNF43	intronic	NA
RCC_T3--1	chr17:58503179	C	NA	38	0	38	66.395	4.653	0	0	0	38	0	C17orf64	exonic	synonymous_SNV
RCC_T3--2	chr17:58503179	C	NA	26	0	26	65.923	4.498	0	0	0	26	0	C17orf64	exonic	synonymous_SNV
RCC_T3--3	chr17:58503179	C	NA	34	0	34	64.353	9.171	0	0	0	34	0	C17orf64	exonic	synonymous_SNV
RCC_T3--4	chr17:58503179	C	NA	40	0	40	66.650	6.974	0	0	0	40	0	C17orf64	exonic	synonymous_SNV
RCC_T3--5	chr17:58503179	C	NA	21	0	21	66.619	3.232	0	0	0	21	0	C17orf64	exonic	synonymous_SNV
RCC_T3--6	chr17:58503179	C	T	31	0.194	25	65.240	7.806	6	58.667	12.388	25	6	C17orf64	exonic	synonymous_SNV
RCC_T3--7	chr17:58503179	C	NA	34	0	34	65.000	9.254	0	0	0	34	0	C17orf64	exonic	synonymous_SNV
RCC_T3--8	chr17:58503179	C	NA	48	0	47	66.319	6.495	0	0	0	47	0	C17orf64	exonic	synonymous_SNV
RCC_T3--GL	chr17:58503179	C	NA	46	0	46	66.848	4.647	0	0	0	46	0	C17orf64	exonic	synonymous_SNV
RCC_T3--1	chr17:64880570	C	NA	36	0	36	66.889	4.452	0	0	0	36	0	CACNG5	intronic	NA
RCC_T3--2	chr17:64880570	C	NA	52	0	52	64.654	5.708	0	0	0	52	0	CACNG5	intronic	NA
RCC_T3--3	chr17:64880570	C	T	42	0.119	37	63.486	7.377	5	61.600	3.847	37	5	CACNG5	intronic	NA
RCC_T3--4	chr17:64880570	C	NA	46	0	46	64.761	5.689	0	0	0	46	0	CACNG5	intronic	NA
RCC_T3--5	chr17:64880570	C	NA	47	0	46	61.261	9.311	0	0	0	46	0	CACNG5	intronic	NA
RCC_T3--6	chr17:64880570	C	NA	63	0	63	63.175	8.985	0	0	0	63	0	CACNG5	intronic	NA
RCC_T3--7	chr17:64880570	C	NA	43	0	43	64.209	4.416	0	0	0	43	0	CACNG5	intronic	NA
RCC_T3--8	chr17:64880570	C	NA	38	0	38	63.947	7.591	0	0	0	38	0	CACNG5	intronic	NA
RCC_T3--GL	chr17:64880570	C	NA	51	0	51	63.608	7.676	0	0	0	51	0	CACNG5	intronic	NA
RCC_T3--1	chr17:66091845	C	NA	44	0	44	66.795	6.801	0	0	0	44	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--2	chr17:66091845	C	NA	25	0	25	66.440	6.279	0	0	0	25	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--3	chr17:66091845	C	NA	20	0	20	66.450	4.161	0	0	0	20	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--4	chr17:66091845	C	NA	34	0	34	66.235	4.868	0	0	0	34	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--5	chr17:66091845	C	T	34	0.118	30	67.433	3.674	4	61.250	13.720	30	4	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--6	chr17:66091845	C	NA	35	0	35	64.714	9.077	0	0	0	35	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--7	chr17:66091845	C	T	20	0.050	19	68.579	2.411	1	61.000	0.000	19	1	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--8	chr17:66091845	C	NA	34	0	34	66.176	7.200	0	0	0	34	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--GL	chr17:66091845	C	NA	34	0	34	64.235	7.738	0	0	0	34	0	KPNA2(dist=48875),LINC00674(dist=5851)	intergenic	NA
RCC_T3--1	chr17:7160309	C	A	26	0.154	22	63.500	9.359	4	68.750	3.202	22	4	ELP5	exonic	synonymous_SNV
RCC_T3--2	chr17:7160309	C	NA	36	0	36	61.778	10.540	0	0	0	36	0	ELP5	exonic	synonymous_SNV
RCC_T3--3	chr17:7160309	C	NA	42	0	42	65.738	6.336	0	0	0	42	0	ELP5	exonic	synonymous_SNV
RCC_T3--4	chr17:7160309	C	NA	34	0	34	66.500	6.369	0	0	0	34	0	ELP5	exonic	synonymous_SNV
RCC_T3--5	chr17:7160309	C	NA	18	0	18	63.111	8.408	0	0	0	18	0	ELP5	exonic	synonymous_SNV
RCC_T3--6	chr17:7160309	C	NA	33	0	33	64.333	3.360	0	0	0	33	0	ELP5	exonic	synonymous_SNV
RCC_T3--7	chr17:7160309	C	NA	26	0	26	66.192	4.176	0	0	0	26	0	ELP5	exonic	synonymous_SNV
RCC_T3--8	chr17:7160309	C	NA	33	0	33	62.485	8.036	0	0	0	33	0	ELP5	exonic	synonymous_SNV
RCC_T3--GL	chr17:7160309	C	NA	43	0	43	62.884	10.133	0	0	0	43	0	ELP5	exonic	synonymous_SNV
RCC_T3--1	chr17:72368086	G	NA	20	0	20	66.000	8.510	0	0	0	20	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:72368086	G	NA	22	0	22	67.409	3.050	0	0	0	22	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:72368086	G	NA	18	0	18	67.500	4.120	0	0	0	18	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:72368086	G	NA	27	0	27	66.111	7.355	0	0	0	27	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:72368086	G	A	30	0.133	26	65.962	6.122	4	61.750	4.272	26	4	GPR142	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:72368086	G	NA	19	0	19	65.105	5.887	0	0	0	19	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:72368086	G	NA	36	0	36	66.944	4.945	0	0	0	36	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:72368086	G	NA	24	0	24	67.750	3.733	0	0	0	24	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:72368086	G	NA	33	0	33	65.848	7.997	0	0	0	33	0	GPR142	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:7256233	T	NA	52	0	52	65.731	4.307	0	0	0	52	0	KCTD11	UTR5	NA
RCC_T3--2	chr17:7256233	T	NA	62	0	62	65.177	5.403	0	0	0	62	0	KCTD11	UTR5	NA
RCC_T3--3	chr17:7256233	T	NA	61	0	61	65.393	5.405	0	0	0	61	0	KCTD11	UTR5	NA
RCC_T3--4	chr17:7256233	T	NA	31	0	31	66.806	2.798	0	0	0	31	0	KCTD11	UTR5	NA
RCC_T3--5	chr17:7256233	T	NA	41	0	40	64.925	6.530	0	0	0	40	0	KCTD11	UTR5	NA
RCC_T3--6	chr17:7256233	T	C	42	0.143	36	63.222	6.655	6	64.167	2.563	36	6	KCTD11	UTR5	NA
RCC_T3--7	chr17:7256233	T	NA	59	0	59	64.746	5.155	0	0	0	59	0	KCTD11	UTR5	NA
RCC_T3--8	chr17:7256233	T	NA	62	0	62	64.419	7.976	0	0	0	62	0	KCTD11	UTR5	NA
RCC_T3--GL	chr17:7256233	T	NA	55	0	55	65.727	4.374	0	0	0	55	0	KCTD11	UTR5	NA
RCC_T3--1	chr17:7256739	G	NA	37	0	33	57.000	11.009	0	0	0	33	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:7256739	G	NA	56	0	54	55.407	11.893	0	0	0	54	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:7256739	G	NA	48	0	41	58.341	9.730	0	0	0	41	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:7256739	G	NA	73	0	68	53.735	11.772	0	0	0	68	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:7256739	G	NA	40	0	32	52.031	12.772	0	0	0	32	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:7256739	G	A	36	0.028	30	58.233	9.835	1	49.000	0.000	30	1	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:7256739	G	A	49	0.122	38	56.395	11.990	6	58.333	8.824	38	6	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:7256739	G	NA	53	0	52	54.058	11.529	0	0	0	52	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:7256739	G	NA	47	0	44	53.136	12.105	0	0	0	44	0	KCTD11	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:72938091	C	NA	23	0	23	67.130	3.167	0	0	0	23	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:72938091	C	NA	47	0	47	66.638	7.775	0	0	0	47	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:72938091	C	NA	26	0	26	68.231	4.572	0	0	0	26	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:72938091	C	NA	37	0	37	66.324	6.827	0	0	0	37	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:72938091	C	A	27	0.148	23	67.696	2.670	4	71.000	1.155	23	4	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:72938091	C	NA	36	0	36	65.944	4.329	0	0	0	36	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:72938091	C	NA	50	0	50	66.100	6.677	0	0	0	50	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:72938091	C	NA	44	0	44	67.227	4.203	0	0	0	44	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:72938091	C	NA	44	0	44	66.682	4.599	0	0	0	44	0	OTOP3	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:73235514	C	T	27	0.037	26	64.115	9.450	1	39.000	0.000	26	1	GGA3	exonic	synonymous_SNV
RCC_T3--2	chr17:73235514	C	NA	26	0	26	65.192	3.763	0	0	0	26	0	GGA3	exonic	synonymous_SNV
RCC_T3--3	chr17:73235514	C	NA	25	0	25	63.080	8.041	0	0	0	25	0	GGA3	exonic	synonymous_SNV
RCC_T3--4	chr17:73235514	C	T	32	0.125	28	67.643	3.889	4	65.000	1.826	28	4	GGA3	exonic	synonymous_SNV
RCC_T3--5	chr17:73235514	C	NA	25	0	25	61.000	12.014	0	0	0	25	0	GGA3	exonic	synonymous_SNV
RCC_T3--6	chr17:73235514	C	NA	16	0	16	62.688	10.537	0	0	0	16	0	GGA3	exonic	synonymous_SNV
RCC_T3--7	chr17:73235514	C	NA	35	0	35	65.343	7.380	0	0	0	35	0	GGA3	exonic	synonymous_SNV
RCC_T3--8	chr17:73235514	C	NA	33	0	33	63.848	6.865	0	0	0	33	0	GGA3	exonic	synonymous_SNV
RCC_T3--GL	chr17:73235514	C	NA	33	0	33	64.273	6.105	0	0	0	33	0	GGA3	exonic	synonymous_SNV
RCC_T3--1	chr17:74134268	G	NA	26	0	26	64.577	7.500	0	0	0	26	0	FOXJ1	intronic	NA
RCC_T3--2	chr17:74134268	G	NA	37	0	37	63.946	6.240	0	0	0	37	0	FOXJ1	intronic	NA
RCC_T3--3	chr17:74134268	G	NA	30	0	29	63.069	7.764	0	0	0	29	0	FOXJ1	intronic	NA
RCC_T3--4	chr17:74134268	G	NA	34	0	34	66.265	3.068	0	0	0	34	0	FOXJ1	intronic	NA
RCC_T3--5	chr17:74134268	G	A	34	0.118	30	64.900	2.670	4	57.250	13.099	30	4	FOXJ1	intronic	NA
RCC_T3--6	chr17:74134268	G	NA	28	0	28	63.179	6.611	0	0	0	28	0	FOXJ1	intronic	NA
RCC_T3--7	chr17:74134268	G	NA	21	0	21	62.619	7.684	0	0	0	21	0	FOXJ1	intronic	NA
RCC_T3--8	chr17:74134268	G	NA	34	0	34	64.676	3.022	0	0	0	34	0	FOXJ1	intronic	NA
RCC_T3--GL	chr17:74134268	G	NA	43	0	43	62.116	8.098	0	0	0	43	0	FOXJ1	intronic	NA
RCC_T3--1	chr17:74151763	C	A	12	0.333	8	69.750	1.753	4	66.000	0.816	8	4	RNF157	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:74151763	C	NA	29	0	29	69.724	2.865	0	0	0	29	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:74151763	C	NA	16	0	16	67.812	4.983	0	0	0	16	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:74151763	C	NA	10	0	10	69.600	3.373	0	0	0	10	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:74151763	C	NA	19	0	19	68.105	4.999	0	0	0	19	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:74151763	C	NA	19	0	19	65.789	7.547	0	0	0	19	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:74151763	C	NA	20	0	20	67.550	4.097	0	0	0	20	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:74151763	C	NA	17	0	17	66.412	4.287	0	0	0	17	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:74151763	C	NA	35	0	35	65.714	6.884	0	0	0	35	0	RNF157	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:74163575	C	NA	29	0	29	68.448	4.323	0	0	0	29	0	RNF157	intronic	NA
RCC_T3--2	chr17:74163575	C	A	25	0.160	21	67.190	7.181	4	67.000	3.464	21	4	RNF157	intronic	NA
RCC_T3--3	chr17:74163575	C	NA	28	0	28	68.071	3.537	0	0	0	28	0	RNF157	intronic	NA
RCC_T3--4	chr17:74163575	C	NA	26	0	26	67.115	5.624	0	0	0	26	0	RNF157	intronic	NA
RCC_T3--5	chr17:74163575	C	NA	17	0	17	67.765	9.128	0	0	0	17	0	RNF157	intronic	NA
RCC_T3--6	chr17:74163575	C	NA	35	0	35	67.657	3.029	0	0	0	35	0	RNF157	intronic	NA
RCC_T3--7	chr17:74163575	C	NA	34	0	34	67.618	6.836	0	0	0	34	0	RNF157	intronic	NA
RCC_T3--8	chr17:74163575	C	NA	32	0	32	68.250	5.430	0	0	0	32	0	RNF157	intronic	NA
RCC_T3--GL	chr17:74163575	C	NA	33	0	33	67.212	5.487	0	0	0	33	0	RNF157	intronic	NA
RCC_T3--1	chr17:74309229	T	NA	20	0	20	67.400	7.272	0	0	0	20	0	PRPSAP1	intronic	NA
RCC_T3--2	chr17:74309229	T	NA	26	0	26	68.731	3.628	0	0	0	26	0	PRPSAP1	intronic	NA
RCC_T3--3	chr17:74309229	T	NA	24	0	24	68.250	4.376	0	0	0	24	0	PRPSAP1	intronic	NA
RCC_T3--4	chr17:74309229	T	NA	32	0	32	69.031	4.084	0	0	0	32	0	PRPSAP1	intronic	NA
RCC_T3--5	chr17:74309229	T	A	17	0.176	14	66.929	7.641	3	65.000	5.196	14	3	PRPSAP1	intronic	NA
RCC_T3--6	chr17:74309229	T	NA	21	0	21	66.762	4.253	0	0	0	21	0	PRPSAP1	intronic	NA
RCC_T3--7	chr17:74309229	T	NA	30	0	30	65.767	6.971	0	0	0	30	0	PRPSAP1	intronic	NA
RCC_T3--8	chr17:74309229	T	NA	29	0	29	65.862	6.754	0	0	0	29	0	PRPSAP1	intronic	NA
RCC_T3--GL	chr17:74309229	T	NA	38	0	38	68.184	3.882	0	0	0	38	0	PRPSAP1	intronic	NA
RCC_T3--1	chr17:74468770	C	NA	26	0	26	65.808	8.198	0	0	0	26	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--2	chr17:74468770	C	A	34	0.118	30	66.967	5.493	4	66.250	0.957	30	4	RHBDF2	exonic	stopgain_SNV
RCC_T3--3	chr17:74468770	C	NA	40	0	40	66.475	6.405	0	0	0	40	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--4	chr17:74468770	C	NA	36	0	36	65.389	5.531	0	0	0	36	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--5	chr17:74468770	C	NA	46	0	46	67.739	3.179	0	0	0	46	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--6	chr17:74468770	C	NA	39	0	39	66.026	5.204	0	0	0	39	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--7	chr17:74468770	C	NA	62	0	62	65.935	8.444	0	0	0	62	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--8	chr17:74468770	C	NA	47	0	47	65.447	7.703	0	0	0	47	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--GL	chr17:74468770	C	NA	57	0	57	65.737	6.575	0	0	0	57	0	RHBDF2	exonic	stopgain_SNV
RCC_T3--1	chr17:7476159	C	NA	171	0	171	65.398	6.052	0	0	0	171	0	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--2	chr17:7476159	C	G	209	0.043	200	63.790	9.107	9	65.333	6.442	200	9	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--3	chr17:7476159	C	NA	204	0	204	62.814	8.400	0	0	0	204	0	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--4	chr17:7476159	C	NA	206	0	206	65.092	7.351	0	0	0	206	0	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--5	chr17:7476159	C	G	175	0.109	155	64.084	8.004	19	66.000	2.539	155	19	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--6	chr17:7476159	C	G	240	0.171	199	64.437	7.656	41	63.390	6.245	199	41	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--7	chr17:7476159	C	NA	255	0	255	64.059	7.904	0	0	0	255	0	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--8	chr17:7476159	C	G	181	0.260	134	64.664	7.482	47	62.979	6.992	134	47	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--GL	chr17:7476159	C	NA	177	0	177	63.576	7.746	0	0	0	177	0	SENP3-EIF4A1	ncRNA_exonic	NA
RCC_T3--1	chr17:7533843	C	T	53	0.019	52	66.346	7.057	1	68.000	0.000	52	1	SHBG	intronic	NA
RCC_T3--2	chr17:7533843	C	NA	48	0	48	66.958	5.481	0	0	0	48	0	SHBG	intronic	NA
RCC_T3--3	chr17:7533843	C	NA	66	0	66	65.803	6.805	0	0	0	66	0	SHBG	intronic	NA
RCC_T3--4	chr17:7533843	C	NA	57	0	57	67.000	4.280	0	0	0	57	0	SHBG	intronic	NA
RCC_T3--5	chr17:7533843	C	NA	32	0	32	66.469	5.962	0	0	0	32	0	SHBG	intronic	NA
RCC_T3--6	chr17:7533843	C	NA	37	0	37	65.081	7.525	0	0	0	37	0	SHBG	intronic	NA
RCC_T3--7	chr17:7533843	C	T	47	0.128	41	67.415	6.485	6	66.667	1.633	41	6	SHBG	intronic	NA
RCC_T3--8	chr17:7533843	C	NA	45	0	45	66.956	7.144	0	0	0	45	0	SHBG	intronic	NA
RCC_T3--GL	chr17:7533843	C	NA	64	0	64	65.766	8.118	0	0	0	64	0	SHBG	intronic	NA
RCC_T3--1	chr17:75398464	A	T	10	0.200	8	68.250	2.816	2	64.500	0.707	8	2	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:75398464	A	NA	32	0	31	64.161	9.381	0	0	0	31	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:75398464	A	NA	33	0	33	62.333	9.489	0	0	0	33	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:75398464	A	NA	28	0	28	62.786	8.736	0	0	0	28	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:75398464	A	NA	25	0	25	64.680	8.835	0	0	0	25	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:75398464	A	NA	24	0	24	63.750	4.989	0	0	0	24	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:75398464	A	NA	29	0	29	63.897	7.589	0	0	0	29	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:75398464	A	NA	19	0	19	65.263	5.020	0	0	0	19	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:75398464	A	NA	33	0	33	63.091	8.390	0	0	0	33	0	SEPT9	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:7579899	T	C	33	0.182	27	66.037	7.251	6	66.167	4.401	27	6	TP53	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:7579899	T	NA	32	0	32	65.438	7.632	0	0	0	32	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:7579899	T	NA	37	0	37	66.973	5.331	0	0	0	37	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:7579899	T	NA	47	0	47	66.957	6.643	0	0	0	47	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:7579899	T	NA	50	0	50	64.960	8.189	0	0	0	50	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:7579899	T	NA	48	0	48	61.375	10.870	0	0	0	48	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:7579899	T	NA	53	0	53	66.698	3.984	0	0	0	53	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:7579899	T	NA	46	0	46	65.696	6.867	0	0	0	46	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:7579899	T	NA	42	0	42	66.143	4.771	0	0	0	42	0	TP53	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:76521193	C	NA	45	0	45	65.200	6.514	0	0	0	45	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:76521193	C	A	65	0.108	58	65.914	4.971	7	64.857	4.670	58	7	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:76521193	C	A	51	0.020	50	65.620	8.216	1	36.000	0.000	50	1	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:76521193	C	NA	49	0	49	64.857	6.564	0	0	0	49	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:76521193	C	NA	34	0	34	65.765	5.625	0	0	0	34	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:76521193	C	NA	33	0	33	63.515	8.136	0	0	0	33	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:76521193	C	NA	47	0	47	66.149	6.007	0	0	0	47	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:76521193	C	NA	50	0	50	65.240	7.244	0	0	0	50	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:76521193	C	NA	78	0	78	65.244	6.626	0	0	0	78	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:76799446	C	NA	47	0	47	66.872	6.142	0	0	0	47	0	USP36	intronic	NA
RCC_T3--2	chr17:76799446	C	NA	46	0	45	66.600	7.344	0	0	0	45	0	USP36	intronic	NA
RCC_T3--3	chr17:76799446	C	NA	42	0	42	66.667	6.694	0	0	0	42	0	USP36	intronic	NA
RCC_T3--4	chr17:76799446	C	NA	45	0	45	66.333	5.745	0	0	0	45	0	USP36	intronic	NA
RCC_T3--5	chr17:76799446	C	T	29	0.138	25	64.640	8.291	4	64.500	1.000	25	4	USP36	intronic	NA
RCC_T3--6	chr17:76799446	C	NA	52	0	52	67.212	3.599	0	0	0	52	0	USP36	intronic	NA
RCC_T3--7	chr17:76799446	C	NA	58	0	58	65.707	4.562	0	0	0	58	0	USP36	intronic	NA
RCC_T3--8	chr17:76799446	C	NA	48	0	48	65.583	6.716	0	0	0	48	0	USP36	intronic	NA
RCC_T3--GL	chr17:76799446	C	NA	63	0	63	64.317	6.569	0	0	0	63	0	USP36	intronic	NA
RCC_T3--1	chr17:77758670	G	NA	23	0	23	66.130	4.985	0	0	0	23	0	CBX2	exonic	synonymous_SNV
RCC_T3--2	chr17:77758670	G	NA	45	0	45	64.200	8.722	0	0	0	45	0	CBX2	exonic	synonymous_SNV
RCC_T3--3	chr17:77758670	G	NA	53	0	53	63.660	6.861	0	0	0	53	0	CBX2	exonic	synonymous_SNV
RCC_T3--4	chr17:77758670	G	NA	46	0	46	62.087	10.729	0	0	0	46	0	CBX2	exonic	synonymous_SNV
RCC_T3--5	chr17:77758670	G	A	20	0.200	16	62.688	8.577	4	62.500	4.041	16	4	CBX2	exonic	synonymous_SNV
RCC_T3--6	chr17:77758670	G	NA	32	0	32	62.000	10.987	0	0	0	32	0	CBX2	exonic	synonymous_SNV
RCC_T3--7	chr17:77758670	G	NA	48	0	48	64.396	8.617	0	0	0	48	0	CBX2	exonic	synonymous_SNV
RCC_T3--8	chr17:77758670	G	NA	31	0	31	63.677	9.991	0	0	0	31	0	CBX2	exonic	synonymous_SNV
RCC_T3--GL	chr17:77758670	G	NA	44	0	44	62.227	9.086	0	0	0	44	0	CBX2	exonic	synonymous_SNV
RCC_T3--1	chr17:78082284	G	NA	20	0	20	63.950	9.971	0	0	0	20	0	GAA	intronic	NA
RCC_T3--2	chr17:78082284	G	NA	32	0	32	64.188	9.610	0	0	0	32	0	GAA	intronic	NA
RCC_T3--3	chr17:78082284	G	NA	34	0	34	64.912	7.432	0	0	0	34	0	GAA	intronic	NA
RCC_T3--4	chr17:78082284	G	NA	29	0	29	65.034	8.454	0	0	0	29	0	GAA	intronic	NA
RCC_T3--5	chr17:78082284	G	NA	31	0	31	65.806	2.455	0	0	0	31	0	GAA	intronic	NA
RCC_T3--6	chr17:78082284	G	NA	18	0	18	59.722	13.367	0	0	0	18	0	GAA	intronic	NA
RCC_T3--7	chr17:78082284	G	A	30	0.133	26	65.346	5.122	4	57.000	10.231	26	4	GAA	intronic	NA
RCC_T3--8	chr17:78082284	G	NA	33	0	33	66.333	5.097	0	0	0	33	0	GAA	intronic	NA
RCC_T3--GL	chr17:78082284	G	NA	33	0	33	65.909	6.064	0	0	0	33	0	GAA	intronic	NA
RCC_T3--1	chr17:78445640	G	NA	24	0	24	68.750	3.138	0	0	0	24	0	NPTX1	exonic	synonymous_SNV
RCC_T3--2	chr17:78445640	G	NA	50	0	50	67.820	3.810	0	0	0	50	0	NPTX1	exonic	synonymous_SNV
RCC_T3--3	chr17:78445640	G	NA	39	0	39	65.641	9.477	0	0	0	39	0	NPTX1	exonic	synonymous_SNV
RCC_T3--4	chr17:78445640	G	NA	30	0	30	67.967	3.774	0	0	0	30	0	NPTX1	exonic	synonymous_SNV
RCC_T3--5	chr17:78445640	G	NA	33	0	33	65.303	5.660	0	0	0	33	0	NPTX1	exonic	synonymous_SNV
RCC_T3--6	chr17:78445640	G	NA	42	0	42	64.476	7.958	0	0	0	42	0	NPTX1	exonic	synonymous_SNV
RCC_T3--7	chr17:78445640	G	NA	29	0	29	66.138	4.051	0	0	0	29	0	NPTX1	exonic	synonymous_SNV
RCC_T3--8	chr17:78445640	G	A	42	0.143	36	66.639	4.722	6	66.833	5.419	36	6	NPTX1	exonic	synonymous_SNV
RCC_T3--GL	chr17:78445640	G	NA	44	0	44	65.864	6.234	0	0	0	44	0	NPTX1	exonic	synonymous_SNV
RCC_T3--1	chr17:80007718	G	NA	21	0	21	65.286	8.667	0	0	0	21	0	RFNG	exonic	synonymous_SNV
RCC_T3--2	chr17:80007718	G	NA	35	0	35	65.686	5.875	0	0	0	35	0	RFNG	exonic	synonymous_SNV
RCC_T3--3	chr17:80007718	G	A	32	0.125	28	65.107	7.500	4	65.000	0.816	28	4	RFNG	exonic	synonymous_SNV
RCC_T3--4	chr17:80007718	G	NA	26	0	26	66.423	7.495	0	0	0	26	0	RFNG	exonic	synonymous_SNV
RCC_T3--5	chr17:80007718	G	NA	23	0	23	61.217	12.321	0	0	0	23	0	RFNG	exonic	synonymous_SNV
RCC_T3--6	chr17:80007718	G	NA	22	0	22	65.591	8.099	0	0	0	22	0	RFNG	exonic	synonymous_SNV
RCC_T3--7	chr17:80007718	G	NA	34	0	34	63.941	6.536	0	0	0	34	0	RFNG	exonic	synonymous_SNV
RCC_T3--8	chr17:80007718	G	NA	18	0	18	64.333	7.137	0	0	0	18	0	RFNG	exonic	synonymous_SNV
RCC_T3--GL	chr17:80007718	G	NA	37	0	36	62.111	9.121	0	0	0	36	0	RFNG	exonic	synonymous_SNV
RCC_T3--1	chr17:80007731	C	T	17	0.176	14	61.429	9.796	3	69.333	2.517	14	3	RFNG	intronic	NA
RCC_T3--2	chr17:80007731	C	NA	32	0	32	65.156	4.473	0	0	0	32	0	RFNG	intronic	NA
RCC_T3--3	chr17:80007731	C	NA	26	0	26	62.308	8.661	0	0	0	26	0	RFNG	intronic	NA
RCC_T3--4	chr17:80007731	C	NA	22	0	21	63.524	10.434	0	0	0	21	0	RFNG	intronic	NA
RCC_T3--5	chr17:80007731	C	NA	26	0	26	58.615	10.613	0	0	0	26	0	RFNG	intronic	NA
RCC_T3--6	chr17:80007731	C	NA	21	0	21	62.476	10.558	0	0	0	21	0	RFNG	intronic	NA
RCC_T3--7	chr17:80007731	C	NA	28	0	28	63.607	6.652	0	0	0	28	0	RFNG	intronic	NA
RCC_T3--8	chr17:80007731	C	NA	17	0	17	62.647	5.841	0	0	0	17	0	RFNG	intronic	NA
RCC_T3--GL	chr17:80007731	C	NA	40	0	40	60.950	11.560	0	0	0	40	0	RFNG	intronic	NA
RCC_T3--1	chr17:8790516	T	NA	35	0	35	67.143	3.859	0	0	0	35	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--2	chr17:8790516	T	NA	49	0	49	65.939	6.968	0	0	0	49	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--3	chr17:8790516	T	NA	45	0	45	63.800	10.712	0	0	0	45	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--4	chr17:8790516	T	NA	56	0	56	65.411	8.146	0	0	0	56	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--5	chr17:8790516	T	C	52	0.115	46	67.065	6.202	6	61.667	6.346	46	6	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--6	chr17:8790516	T	NA	44	0	44	65.045	7.097	0	0	0	44	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--7	chr17:8790516	T	NA	61	0	61	65.148	4.946	0	0	0	61	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--8	chr17:8790516	T	NA	58	0	58	65.448	8.836	0	0	0	58	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr17:8790516	T	NA	40	0	40	66.275	5.826	0	0	0	40	0	PIK3R5	exonic	nonsynonymous_SNV
RCC_T3--1	chr17:8792263	T	NA	19	0	19	61.895	9.955	0	0	0	19	0	PIK3R5	UTR5	NA
RCC_T3--2	chr17:8792263	T	NA	30	0	30	66.233	7.614	0	0	0	30	0	PIK3R5	UTR5	NA
RCC_T3--3	chr17:8792263	T	NA	40	0	39	65.564	5.529	0	0	0	39	0	PIK3R5	UTR5	NA
RCC_T3--4	chr17:8792263	T	NA	22	0	21	64.857	6.894	0	0	0	21	0	PIK3R5	UTR5	NA
RCC_T3--5	chr17:8792263	T	A	29	0.138	25	67.000	3.202	4	68.500	3.512	25	4	PIK3R5	UTR5	NA
RCC_T3--6	chr17:8792263	T	NA	31	0	31	66.226	5.427	0	0	0	31	0	PIK3R5	UTR5	NA
RCC_T3--7	chr17:8792263	T	NA	45	0	45	66.378	6.489	0	0	0	45	0	PIK3R5	UTR5	NA
RCC_T3--8	chr17:8792263	T	NA	32	0	32	66.344	4.667	0	0	0	32	0	PIK3R5	UTR5	NA
RCC_T3--GL	chr17:8792263	T	NA	38	0	38	63.000	8.687	0	0	0	38	0	PIK3R5	UTR5	NA
RCC_T3--1	chr17:9515512	T	NA	13	0	13	65.923	2.532	0	0	0	13	0	WDR16	intronic	NA
RCC_T3--2	chr17:9515512	T	NA	30	0	30	67.567	3.014	0	0	0	30	0	WDR16	intronic	NA
RCC_T3--3	chr17:9515512	T	NA	29	0	29	67.310	3.865	0	0	0	29	0	WDR16	intronic	NA
RCC_T3--4	chr17:9515512	T	NA	32	0	32	67.406	5.405	0	0	0	32	0	WDR16	intronic	NA
RCC_T3--5	chr17:9515512	T	C	26	0.154	22	65.045	7.755	4	66.000	6.481	22	4	WDR16	intronic	NA
RCC_T3--6	chr17:9515512	T	NA	20	0	20	66.350	6.784	0	0	0	20	0	WDR16	intronic	NA
RCC_T3--7	chr17:9515512	T	NA	23	0	23	68.043	6.138	0	0	0	23	0	WDR16	intronic	NA
RCC_T3--8	chr17:9515512	T	C	35	0.029	34	67.206	5.050	1	40.000	0.000	34	1	WDR16	intronic	NA
RCC_T3--GL	chr17:9515512	T	NA	38	0	38	66.868	6.419	0	0	0	38	0	WDR16	intronic	NA
RCC_T3--1	chr1:80558424	G	NA	47	0	47	66.660	6.215	0	0	0	47	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--2	chr1:80558424	G	NA	42	0	42	68.333	3.144	0	0	0	42	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--3	chr1:80558424	G	NA	46	0	46	66.696	6.709	0	0	0	46	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--4	chr1:80558424	G	NA	37	0	37	66.162	7.171	0	0	0	37	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--5	chr1:80558424	G	C	34	0.176	28	64.536	9.418	6	67.167	2.401	28	6	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--6	chr1:80558424	G	NA	33	0	33	66.121	6.102	0	0	0	33	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--7	chr1:80558424	G	NA	50	0	50	64.600	9.017	0	0	0	50	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--8	chr1:80558424	G	NA	57	0	57	66.719	5.864	0	0	0	57	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--GL	chr1:80558424	G	NA	45	0	44	66.182	6.521	0	0	0	44	0	ELTD1(dist=1085929),LPHN2(dist=1707658)	intergenic	NA
RCC_T3--1	chr18:12495951	C	G	44	0.023	22	68.364	3.017	1	62.000	0.000	22	1	SPIRE1	intronic	NA
RCC_T3--2	chr18:12495951	C	G	42	0.024	20	69.450	2.762	1	62.000	0.000	20	1	SPIRE1	intronic	NA
RCC_T3--3	chr18:12495951	C	NA	38	0	21	69.143	3.214	0	0	0	21	0	SPIRE1	intronic	NA
RCC_T3--4	chr18:12495951	C	G	55	0.018	31	69.129	2.630	1	62.000	0.000	31	1	SPIRE1	intronic	NA
RCC_T3--5	chr18:12495951	C	G	41	0.098	22	69.500	3.004	4	63.500	1.732	22	4	SPIRE1	intronic	NA
RCC_T3--6	chr18:12495951	C	NA	39	0	19	65.211	6.477	0	0	0	19	0	SPIRE1	intronic	NA
RCC_T3--7	chr18:12495951	C	G	49	0.082	22	68.091	2.671	4	61.500	2.887	22	4	SPIRE1	intronic	NA
RCC_T3--8	chr18:12495951	C	G	62	0.048	34	68.941	2.741	3	63.667	1.528	34	3	SPIRE1	intronic	NA
RCC_T3--GL	chr18:12495951	C	NA	62	0	37	67.189	5.098	0	0	0	37	0	SPIRE1	intronic	NA
RCC_T3--1	chr18:2079918	C	NA	17	0	17	68.235	4.236	0	0	0	17	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--2	chr18:2079918	C	NA	23	0	23	69.826	2.674	0	0	0	23	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--3	chr18:2079918	C	NA	26	0	26	66.423	5.353	0	0	0	26	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--4	chr18:2079918	C	NA	31	0	31	69.516	3.254	0	0	0	31	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--5	chr18:2079918	C	A	31	0.129	27	68.000	5.122	4	68.750	3.304	27	4	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--6	chr18:2079918	C	NA	19	0	19	69.421	4.538	0	0	0	19	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--7	chr18:2079918	C	NA	39	0	39	69.026	3.645	0	0	0	39	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--8	chr18:2079918	C	NA	29	0	29	67.586	5.234	0	0	0	29	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--GL	chr18:2079918	C	NA	38	0	38	68.526	6.517	0	0	0	38	0	LINC00470(dist=720288),METTL4(dist=457606)	intergenic	NA
RCC_T3--1	chr1:8386061	C	NA	41	0	41	67.268	3.860	0	0	0	41	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:8386061	C	NA	49	0	49	64.408	8.643	0	0	0	49	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:8386061	C	NA	52	0	52	65.308	6.522	0	0	0	52	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:8386061	C	NA	53	0	53	66.491	4.564	0	0	0	53	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:8386061	C	NA	33	0	33	66.394	4.589	0	0	0	33	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:8386061	C	NA	38	0	38	65.658	7.208	0	0	0	38	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:8386061	C	NA	55	0	55	65.855	7.367	0	0	0	55	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:8386061	C	T	33	0.121	29	64.172	7.732	4	66.000	6.976	29	4	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:8386061	C	NA	54	0	54	62.852	9.238	0	0	0	54	0	SLC45A1	exonic	nonsynonymous_SNV
RCC_T3--1	chr18:41902138	T	G	22	0.045	21	62.048	11.452	1	38.000	0.000	21	1	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--2	chr18:41902138	T	G	27	0.185	22	61.727	11.642	5	40.400	7.403	22	5	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--3	chr18:41902138	T	G	29	0.103	26	58.077	12.380	3	37.667	5.033	26	3	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--4	chr18:41902138	T	G	32	0.156	26	57.692	12.119	5	35.400	2.191	26	5	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--5	chr18:41902138	T	G	28	0.071	26	58.923	11.164	2	37.000	0.000	26	2	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--6	chr18:41902138	T	G	26	0.154	22	59.818	12.861	4	41.250	7.676	22	4	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--7	chr18:41902138	T	G	33	0.030	32	57.250	12.064	1	37.000	0.000	32	1	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--8	chr18:41902138	T	G	20	0.100	18	59.278	12.545	2	46.500	13.435	18	2	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--GL	chr18:41902138	T	NA	35	0	34	60.029	11.504	0	0	0	34	0	SYT4(dist=1044523),SETBP1(dist=358000)	intergenic	NA
RCC_T3--1	chr18:44152072	C	NA	33	0	33	67.030	6.584	0	0	0	33	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr18:44152072	C	NA	38	0	38	67.289	5.909	0	0	0	38	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr18:44152072	C	NA	38	0	38	66.816	4.519	0	0	0	38	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr18:44152072	C	NA	43	0	43	65.093	8.318	0	0	0	43	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr18:44152072	C	NA	38	0	38	65.684	8.693	0	0	0	38	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr18:44152072	C	NA	40	0	40	67.550	6.672	0	0	0	40	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr18:44152072	C	NA	44	0	44	65.045	6.668	0	0	0	44	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr18:44152072	C	T	31	0.129	27	65.333	9.051	4	62.500	8.888	27	4	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr18:44152072	C	NA	45	0	45	64.889	5.678	0	0	0	45	0	LOXHD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr18:56063656	G	NA	43	0	43	67.163	6.683	0	0	0	43	0	NEDD4L	UTR3	NA
RCC_T3--2	chr18:56063656	G	NA	36	0	36	67.000	4.276	0	0	0	36	0	NEDD4L	UTR3	NA
RCC_T3--3	chr18:56063656	G	NA	36	0	36	66.528	6.148	0	0	0	36	0	NEDD4L	UTR3	NA
RCC_T3--4	chr18:56063656	G	NA	45	0	45	67.289	6.044	0	0	0	45	0	NEDD4L	UTR3	NA
RCC_T3--5	chr18:56063656	G	A	26	0.154	22	65.545	6.442	4	62.000	0.000	22	4	NEDD4L	UTR3	NA
RCC_T3--6	chr18:56063656	G	NA	35	0	35	65.571	7.277	0	0	0	35	0	NEDD4L	UTR3	NA
RCC_T3--7	chr18:56063656	G	NA	50	0	50	64.820	7.992	0	0	0	50	0	NEDD4L	UTR3	NA
RCC_T3--8	chr18:56063656	G	NA	48	0	48	67.250	4.280	0	0	0	48	0	NEDD4L	UTR3	NA
RCC_T3--GL	chr18:56063656	G	NA	56	0	56	65.536	5.724	0	0	0	56	0	NEDD4L	UTR3	NA
RCC_T3--1	chr1:900413	C	NA	28	0	28	66.036	3.156	0	0	0	28	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--2	chr1:900413	C	NA	49	0	49	64.510	7.388	0	0	0	49	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--3	chr1:900413	C	NA	49	0	49	64.592	5.481	0	0	0	49	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--4	chr1:900413	C	NA	27	0	27	65.704	5.476	0	0	0	27	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--5	chr1:900413	C	NA	42	0	42	62.357	8.415	0	0	0	42	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--6	chr1:900413	C	T	49	0.122	43	64.093	4.418	6	61.167	5.742	43	6	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--7	chr1:900413	C	NA	41	0	41	65.634	4.857	0	0	0	41	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--8	chr1:900413	C	NA	40	0	40	63.900	8.530	0	0	0	40	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--GL	chr1:900413	C	NA	41	0	41	62.976	8.299	0	0	0	41	0	KLHL17	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:1056164	G	NA	34	0	34	67.118	3.715	0	0	0	34	0	ABCA7	exonic	synonymous_SNV
RCC_T3--2	chr19:1056164	G	NA	25	0	25	66.040	4.108	0	0	0	25	0	ABCA7	exonic	synonymous_SNV
RCC_T3--3	chr19:1056164	G	NA	27	0	27	63.889	5.787	0	0	0	27	0	ABCA7	exonic	synonymous_SNV
RCC_T3--4	chr19:1056164	G	A	36	0.222	28	68.000	3.651	8	55.750	10.485	28	8	ABCA7	exonic	synonymous_SNV
RCC_T3--5	chr19:1056164	G	NA	26	0	26	63.038	9.137	0	0	0	26	0	ABCA7	exonic	synonymous_SNV
RCC_T3--6	chr19:1056164	G	NA	24	0	24	62.125	10.088	0	0	0	24	0	ABCA7	exonic	synonymous_SNV
RCC_T3--7	chr19:1056164	G	NA	42	0	42	63.071	9.942	0	0	0	42	0	ABCA7	exonic	synonymous_SNV
RCC_T3--8	chr19:1056164	G	NA	33	0	33	65.970	3.804	0	0	0	33	0	ABCA7	exonic	synonymous_SNV
RCC_T3--GL	chr19:1056164	G	NA	46	0	46	62.935	6.917	0	0	0	46	0	ABCA7	exonic	synonymous_SNV
RCC_T3--1	chr19:10685577	C	NA	24	0	24	67.167	3.608	0	0	0	24	0	AP1M2	intronic	NA
RCC_T3--2	chr19:10685577	C	A	32	0.125	28	66.036	3.967	4	66.750	2.500	28	4	AP1M2	intronic	NA
RCC_T3--3	chr19:10685577	C	NA	48	0	48	65.167	5.293	0	0	0	48	0	AP1M2	intronic	NA
RCC_T3--4	chr19:10685577	C	NA	27	0	27	63.370	11.878	0	0	0	27	0	AP1M2	intronic	NA
RCC_T3--5	chr19:10685577	C	NA	28	0	28	62.321	8.336	0	0	0	28	0	AP1M2	intronic	NA
RCC_T3--6	chr19:10685577	C	NA	40	0	40	65.475	6.752	0	0	0	40	0	AP1M2	intronic	NA
RCC_T3--7	chr19:10685577	C	NA	43	0	43	65.791	6.186	0	0	0	43	0	AP1M2	intronic	NA
RCC_T3--8	chr19:10685577	C	NA	42	0	42	64.929	5.816	0	0	0	42	0	AP1M2	intronic	NA
RCC_T3--GL	chr19:10685577	C	NA	66	0	65	63.492	8.384	0	0	0	65	0	AP1M2	intronic	NA
RCC_T3--1	chr19:10792615	C	NA	18	0	18	68.222	4.809	0	0	0	18	0	ILF3	intronic	NA
RCC_T3--2	chr19:10792615	C	NA	26	0	26	67.077	3.687	0	0	0	26	0	ILF3	intronic	NA
RCC_T3--3	chr19:10792615	C	NA	24	0	24	65.583	8.617	0	0	0	24	0	ILF3	intronic	NA
RCC_T3--4	chr19:10792615	C	NA	28	0	28	68.357	3.082	0	0	0	28	0	ILF3	intronic	NA
RCC_T3--5	chr19:10792615	C	A	21	0.190	17	65.588	8.733	4	62.500	1.732	17	4	ILF3	intronic	NA
RCC_T3--6	chr19:10792615	C	NA	23	0	23	63.348	10.325	0	0	0	23	0	ILF3	intronic	NA
RCC_T3--7	chr19:10792615	C	NA	22	0	22	67.591	4.511	0	0	0	22	0	ILF3	intronic	NA
RCC_T3--8	chr19:10792615	C	NA	26	0	26	63.231	10.382	0	0	0	26	0	ILF3	intronic	NA
RCC_T3--GL	chr19:10792615	C	NA	34	0	33	65.545	8.945	0	0	0	33	0	ILF3	intronic	NA
RCC_T3--1	chr19:10934482	G	A	29	0.138	25	64.040	8.126	4	61.750	4.349	25	4	DNM2	exonic	synonymous_SNV
RCC_T3--2	chr19:10934482	G	NA	54	0	54	63.130	9.831	0	0	0	54	0	DNM2	exonic	synonymous_SNV
RCC_T3--3	chr19:10934482	G	NA	48	0	48	66.125	6.094	0	0	0	48	0	DNM2	exonic	synonymous_SNV
RCC_T3--4	chr19:10934482	G	NA	73	0	73	64.945	7.616	0	0	0	73	0	DNM2	exonic	synonymous_SNV
RCC_T3--5	chr19:10934482	G	NA	46	0	46	61.978	11.054	0	0	0	46	0	DNM2	exonic	synonymous_SNV
RCC_T3--6	chr19:10934482	G	NA	69	0	69	61.362	11.306	0	0	0	69	0	DNM2	exonic	synonymous_SNV
RCC_T3--7	chr19:10934482	G	NA	70	0	70	62.457	11.219	0	0	0	70	0	DNM2	exonic	synonymous_SNV
RCC_T3--8	chr19:10934482	G	NA	57	0	57	63.632	7.959	0	0	0	57	0	DNM2	exonic	synonymous_SNV
RCC_T3--GL	chr19:10934482	G	NA	68	0	68	58.235	12.635	0	0	0	68	0	DNM2	exonic	synonymous_SNV
RCC_T3--1	chr19:11213242	T	NA	28	0	28	65.321	5.806	0	0	0	28	0	LDLR	intronic	NA
RCC_T3--2	chr19:11213242	T	NA	46	0	46	64.913	7.198	0	0	0	46	0	LDLR	intronic	NA
RCC_T3--3	chr19:11213242	T	NA	44	0	44	65.045	5.957	0	0	0	44	0	LDLR	intronic	NA
RCC_T3--4	chr19:11213242	T	NA	50	0	50	65.060	8.353	0	0	0	50	0	LDLR	intronic	NA
RCC_T3--5	chr19:11213242	T	C	32	0.125	28	62.929	10.022	4	56.500	15.927	28	4	LDLR	intronic	NA
RCC_T3--6	chr19:11213242	T	NA	39	0	39	64.179	9.285	0	0	0	39	0	LDLR	intronic	NA
RCC_T3--7	chr19:11213242	T	NA	49	0	49	65.776	8.262	0	0	0	49	0	LDLR	intronic	NA
RCC_T3--8	chr19:11213242	T	NA	50	0	50	65.060	7.061	0	0	0	50	0	LDLR	intronic	NA
RCC_T3--GL	chr19:11213242	T	NA	55	0	55	65.091	6.293	0	0	0	55	0	LDLR	intronic	NA
RCC_T3--1	chr19:11354562	C	NA	25	0	25	66.160	5.520	0	0	0	25	0	DOCK6	intronic	NA
RCC_T3--2	chr19:11354562	C	NA	31	0	31	65.258	7.857	0	0	0	31	0	DOCK6	intronic	NA
RCC_T3--3	chr19:11354562	C	NA	21	0	21	69.000	4.764	0	0	0	21	0	DOCK6	intronic	NA
RCC_T3--4	chr19:11354562	C	NA	29	0	29	66.241	5.914	0	0	0	29	0	DOCK6	intronic	NA
RCC_T3--5	chr19:11354562	C	G	23	0.174	19	67.947	4.062	4	70.000	1.633	19	4	DOCK6	intronic	NA
RCC_T3--6	chr19:11354562	C	NA	20	0	20	69.100	3.417	0	0	0	20	0	DOCK6	intronic	NA
RCC_T3--7	chr19:11354562	C	NA	28	0	28	67.929	3.761	0	0	0	28	0	DOCK6	intronic	NA
RCC_T3--8	chr19:11354562	C	NA	18	0	18	64.611	7.461	0	0	0	18	0	DOCK6	intronic	NA
RCC_T3--GL	chr19:11354562	C	NA	40	0	40	65.200	7.583	0	0	0	40	0	DOCK6	intronic	NA
RCC_T3--1	chr19:1231098	A	C	32	0.062	28	59.500	10.536	2	33.000	0.000	28	2	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:1231098	A	C	41	0.195	33	59.879	12.693	8	38.375	3.021	33	8	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:1231098	A	C	24	0.167	20	67.400	4.285	4	37.000	1.414	20	4	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:1231098	A	C	23	0.087	21	60.095	12.243	2	36.000	0.000	21	2	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:1231098	A	C	25	0.120	21	57.810	10.838	3	38.000	6.245	21	3	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:1231098	A	C	20	0.100	18	60.500	7.563	2	36.000	4.243	18	2	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:1231098	A	C	37	0.108	33	59.909	11.493	4	37.000	1.414	33	4	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:1231098	A	C	36	0.056	32	62.312	10.508	2	40.500	6.364	32	2	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:1231098	A	NA	44	0	44	63.977	9.994	0	0	0	44	0	C19orf26	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:13397345	T	NA	18	0	17	53.941	11.349	0	0	0	17	0	CACNA1A	exonic	synonymous_SNV
RCC_T3--2	chr19:13397345	T	G	34	0.088	31	52.194	11.766	3	38.333	4.041	31	3	CACNA1A	exonic	synonymous_SNV
RCC_T3--3	chr19:13397345	T	G	35	0.086	31	53.484	11.512	3	40.333	7.506	31	3	CACNA1A	exonic	synonymous_SNV
RCC_T3--4	chr19:13397345	T	NA	38	0	38	52.842	12.818	0	0	0	38	0	CACNA1A	exonic	synonymous_SNV
RCC_T3--5	chr19:13397345	T	G	21	0.048	20	48.600	11.189	1	36.000	0.000	20	1	CACNA1A	exonic	synonymous_SNV
RCC_T3--6	chr19:13397345	T	G	25	0.200	20	59.450	9.703	5	38.200	4.550	20	5	CACNA1A	exonic	synonymous_SNV
RCC_T3--7	chr19:13397345	T	G	30	0.033	29	49.621	9.627	1	33.000	0.000	29	1	CACNA1A	exonic	synonymous_SNV
RCC_T3--8	chr19:13397345	T	G	33	0.061	31	53.581	10.059	2	36.000	0.000	31	2	CACNA1A	exonic	synonymous_SNV
RCC_T3--GL	chr19:13397345	T	NA	43	0	43	53.907	11.557	0	0	0	43	0	CACNA1A	exonic	synonymous_SNV
RCC_T3--1	chr19:13397825	G	C	74	0.162	62	66.161	7.225	12	68.833	3.713	62	12	CACNA1A	intronic	NA
RCC_T3--2	chr19:13397825	G	C	83	0.145	71	67.915	5.283	12	68.333	3.393	71	12	CACNA1A	intronic	NA
RCC_T3--3	chr19:13397825	G	C	81	0.222	63	67.016	7.124	18	68.167	4.315	63	18	CACNA1A	intronic	NA
RCC_T3--4	chr19:13397825	G	C	72	0.264	53	67.849	3.835	19	68.053	2.798	53	19	CACNA1A	intronic	NA
RCC_T3--5	chr19:13397825	G	C	87	0.011	86	66.779	6.980	1	69.000	0.000	86	1	CACNA1A	intronic	NA
RCC_T3--6	chr19:13397825	G	C	79	0.038	76	66.316	7.005	3	68.333	3.512	76	3	CACNA1A	intronic	NA
RCC_T3--7	chr19:13397825	G	C	80	0.250	60	67.150	3.892	20	67.700	4.578	60	20	CACNA1A	intronic	NA
RCC_T3--8	chr19:13397825	G	C	89	0.247	67	68.090	4.010	22	65.818	8.472	67	22	CACNA1A	intronic	NA
RCC_T3--GL	chr19:13397825	G	NA	103	0	103	66.437	5.648	0	0	0	103	0	CACNA1A	intronic	NA
RCC_T3--1	chr19:13411204	C	NA	22	0	22	67.636	3.971	0	0	0	22	0	CACNA1A	intronic	NA
RCC_T3--2	chr19:13411204	C	NA	20	0	20	69.100	3.810	0	0	0	20	0	CACNA1A	intronic	NA
RCC_T3--3	chr19:13411204	C	NA	25	0	25	66.360	9.255	0	0	0	25	0	CACNA1A	intronic	NA
RCC_T3--4	chr19:13411204	C	NA	20	0	20	68.550	2.874	0	0	0	20	0	CACNA1A	intronic	NA
RCC_T3--5	chr19:13411204	C	NA	11	0	11	68.818	4.446	0	0	0	11	0	CACNA1A	intronic	NA
RCC_T3--6	chr19:13411204	C	T	13	0.077	12	65.667	8.794	1	54.000	0.000	12	1	CACNA1A	intronic	NA
RCC_T3--7	chr19:13411204	C	T	17	0.176	14	67.714	3.583	3	55.667	2.517	14	3	CACNA1A	intronic	NA
RCC_T3--8	chr19:13411204	C	NA	23	0	23	68.087	3.860	0	0	0	23	0	CACNA1A	intronic	NA
RCC_T3--GL	chr19:13411204	C	NA	37	0	37	66.973	5.305	0	0	0	37	0	CACNA1A	intronic	NA
RCC_T3--1	chr19:13879683	C	NA	22	0	22	64.455	9.210	0	0	0	22	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:13879683	C	T	25	0.160	21	63.476	8.280	4	65.500	2.517	21	4	MRI1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:13879683	C	NA	24	0	24	63.917	9.311	0	0	0	24	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:13879683	C	NA	34	0	34	66.059	4.264	0	0	0	34	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:13879683	C	NA	28	0	27	62.593	7.223	0	0	0	27	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:13879683	C	NA	25	0	24	63.208	8.214	0	0	0	24	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:13879683	C	NA	30	0	30	66.300	3.879	0	0	0	30	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:13879683	C	NA	39	0	39	65.718	6.362	0	0	0	39	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:13879683	C	NA	43	0	43	63.767	8.091	0	0	0	43	0	MRI1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:13996858	G	NA	19	0	18	66.222	5.494	0	0	0	18	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:13996858	G	NA	30	0	30	68.267	4.502	0	0	0	30	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:13996858	G	NA	24	0	24	67.833	7.750	0	0	0	24	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:13996858	G	NA	34	0	34	65.500	8.291	0	0	0	34	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:13996858	G	NA	33	0	33	67.364	3.920	0	0	0	33	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:13996858	G	A	30	0.133	26	65.500	8.783	4	64.250	1.500	26	4	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:13996858	G	NA	29	0	29	66.862	7.434	0	0	0	29	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:13996858	G	NA	44	0	44	67.182	7.462	0	0	0	44	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:13996858	G	NA	36	0	36	65.278	8.785	0	0	0	36	0	C19orf57	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:14047213	G	NA	46	0	45	65.178	6.195	0	0	0	45	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:14047213	G	NA	56	0	56	65.732	6.062	0	0	0	56	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:14047213	G	NA	72	0	72	64.000	8.068	0	0	0	72	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:14047213	G	T	66	0.136	57	64.456	10.684	9	63.333	6.910	57	9	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:14047213	G	NA	61	0	61	62.197	10.988	0	0	0	61	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:14047213	G	NA	56	0	56	62.500	11.373	0	0	0	56	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:14047213	G	NA	50	0	50	65.040	8.362	0	0	0	50	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:14047213	G	NA	58	0	58	64.931	7.499	0	0	0	58	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:14047213	G	NA	75	0	75	61.147	11.877	0	0	0	75	0	PODNL1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:14516719	T	NA	23	0	23	65.739	4.014	0	0	0	23	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:14516719	T	NA	26	0	26	66.808	3.655	0	0	0	26	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:14516719	T	NA	34	0	34	62.029	10.122	0	0	0	34	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:14516719	T	A	28	0.143	24	64.292	7.538	4	65.000	4.243	24	4	CD97	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:14516719	T	NA	25	0	25	66.880	4.475	0	0	0	25	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:14516719	T	NA	24	0	24	67.208	3.967	0	0	0	24	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:14516719	T	NA	25	0	25	65.480	8.856	0	0	0	25	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:14516719	T	NA	37	0	37	63.703	11.173	0	0	0	37	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:14516719	T	NA	43	0	42	66.905	4.987	0	0	0	42	0	CD97	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:14863126	C	NA	27	0	27	66.111	5.444	0	0	0	27	0	EMR2	intronic	NA
RCC_T3--2	chr19:14863126	C	NA	26	0	26	68.077	3.773	0	0	0	26	0	EMR2	intronic	NA
RCC_T3--3	chr19:14863126	C	NA	46	0	46	66.848	4.432	0	0	0	46	0	EMR2	intronic	NA
RCC_T3--4	chr19:14863126	C	NA	19	0	19	64.316	6.675	0	0	0	19	0	EMR2	intronic	NA
RCC_T3--5	chr19:14863126	C	A	23	0.174	19	65.158	4.799	4	47.750	17.270	19	4	EMR2	intronic	NA
RCC_T3--6	chr19:14863126	C	A	34	0.029	33	63.909	10.838	1	66.000	0.000	33	1	EMR2	intronic	NA
RCC_T3--7	chr19:14863126	C	NA	43	0	43	66.279	6.386	0	0	0	43	0	EMR2	intronic	NA
RCC_T3--8	chr19:14863126	C	NA	25	0	25	66.960	5.504	0	0	0	25	0	EMR2	intronic	NA
RCC_T3--GL	chr19:14863126	C	NA	36	0	36	63.833	5.119	0	0	0	36	0	EMR2	intronic	NA
RCC_T3--1	chr19:15465905	C	NA	36	0	36	64.944	7.111	0	0	0	36	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:15465905	C	NA	53	0	53	66.943	6.632	0	0	0	53	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:15465905	C	T	50	0.040	48	67.896	4.669	2	69.500	0.707	48	2	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:15465905	C	NA	56	0	56	67.875	3.638	0	0	0	56	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:15465905	C	T	33	0.152	28	67.464	4.418	5	65.600	6.504	28	5	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:15465905	C	NA	37	0	37	65.892	5.985	0	0	0	37	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:15465905	C	T	54	0.019	53	65.736	6.199	1	71.000	0.000	53	1	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:15465905	C	NA	45	0	45	67.111	3.868	0	0	0	45	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:15465905	C	NA	88	0	88	65.625	7.422	0	0	0	88	0	AKAP8	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:15562714	A	NA	35	0	35	66.114	6.507	0	0	0	35	0	RASAL3	exonic	synonymous_SNV
RCC_T3--2	chr19:15562714	A	NA	31	0	31	66.387	6.510	0	0	0	31	0	RASAL3	exonic	synonymous_SNV
RCC_T3--3	chr19:15562714	A	NA	39	0	39	63.641	7.707	0	0	0	39	0	RASAL3	exonic	synonymous_SNV
RCC_T3--4	chr19:15562714	A	NA	42	0	42	68.143	3.558	0	0	0	42	0	RASAL3	exonic	synonymous_SNV
RCC_T3--5	chr19:15562714	A	NA	43	0	43	66.651	5.802	0	0	0	43	0	RASAL3	exonic	synonymous_SNV
RCC_T3--6	chr19:15562714	A	G	30	0.133	26	63.731	9.656	4	64.500	2.380	26	4	RASAL3	exonic	synonymous_SNV
RCC_T3--7	chr19:15562714	A	NA	40	0	40	66.675	5.081	0	0	0	40	0	RASAL3	exonic	synonymous_SNV
RCC_T3--8	chr19:15562714	A	NA	31	0	31	65.065	7.933	0	0	0	31	0	RASAL3	exonic	synonymous_SNV
RCC_T3--GL	chr19:15562714	A	NA	40	0	40	64.550	8.512	0	0	0	40	0	RASAL3	exonic	synonymous_SNV
RCC_T3--1	chr19:15590061	C	NA	22	0	22	67.818	5.654	0	0	0	22	0	PGLYRP2	intronic	NA
RCC_T3--2	chr19:15590061	C	NA	29	0	29	67.897	7.413	0	0	0	29	0	PGLYRP2	intronic	NA
RCC_T3--3	chr19:15590061	C	NA	25	0	25	68.560	3.852	0	0	0	25	0	PGLYRP2	intronic	NA
RCC_T3--4	chr19:15590061	C	A	26	0.154	22	68.364	4.112	4	68.750	4.500	22	4	PGLYRP2	intronic	NA
RCC_T3--5	chr19:15590061	C	NA	40	0	40	66.825	6.222	0	0	0	40	0	PGLYRP2	intronic	NA
RCC_T3--6	chr19:15590061	C	NA	16	0	16	68.625	2.391	0	0	0	16	0	PGLYRP2	intronic	NA
RCC_T3--7	chr19:15590061	C	NA	21	0	21	67.143	5.275	0	0	0	21	0	PGLYRP2	intronic	NA
RCC_T3--8	chr19:15590061	C	NA	36	0	36	67.444	3.722	0	0	0	36	0	PGLYRP2	intronic	NA
RCC_T3--GL	chr19:15590061	C	NA	39	0	39	65.282	7.163	0	0	0	39	0	PGLYRP2	intronic	NA
RCC_T3--1	chr19:16091980	G	NA	30	0	30	63.800	6.900	0	0	0	30	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--2	chr19:16091980	G	A	37	0.135	32	64.250	6.730	5	61.200	5.495	32	5	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--3	chr19:16091980	G	NA	50	0	50	61.640	8.687	0	0	0	50	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--4	chr19:16091980	G	NA	40	0	40	63.475	6.664	0	0	0	40	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--5	chr19:16091980	G	NA	39	0	39	61.564	11.102	0	0	0	39	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--6	chr19:16091980	G	NA	40	0	40	63.350	7.059	0	0	0	40	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--7	chr19:16091980	G	NA	48	0	48	64.604	6.297	0	0	0	48	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--8	chr19:16091980	G	NA	40	0	40	62.375	8.031	0	0	0	40	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--GL	chr19:16091980	G	NA	36	0	36	63.639	5.581	0	0	0	36	0	OR10H4(dist=31212),LINC00661(dist=34464)	intergenic	NA
RCC_T3--1	chr19:17370083	G	A	29	0.138	25	64.720	10.953	4	64.500	5.260	25	4	USHBP1	intronic	NA
RCC_T3--2	chr19:17370083	G	NA	45	0	45	65.222	8.514	0	0	0	45	0	USHBP1	intronic	NA
RCC_T3--3	chr19:17370083	G	NA	46	0	46	67.196	3.781	0	0	0	46	0	USHBP1	intronic	NA
RCC_T3--4	chr19:17370083	G	NA	52	0	52	68.019	6.248	0	0	0	52	0	USHBP1	intronic	NA
RCC_T3--5	chr19:17370083	G	NA	40	0	40	66.725	5.392	0	0	0	40	0	USHBP1	intronic	NA
RCC_T3--6	chr19:17370083	G	NA	32	0	32	67.188	4.842	0	0	0	32	0	USHBP1	intronic	NA
RCC_T3--7	chr19:17370083	G	NA	33	0	33	67.212	4.060	0	0	0	33	0	USHBP1	intronic	NA
RCC_T3--8	chr19:17370083	G	NA	32	0	32	66.719	4.834	0	0	0	32	0	USHBP1	intronic	NA
RCC_T3--GL	chr19:17370083	G	NA	60	0	60	65.800	7.624	0	0	0	60	0	USHBP1	intronic	NA
RCC_T3--1	chr19:17687961	A	G	34	0.029	33	60.182	9.402	1	33.000	0.000	33	1	COLGALT1	intronic	NA
RCC_T3--2	chr19:17687961	A	G	41	0.024	40	60.300	10.188	1	38.000	0.000	40	1	COLGALT1	intronic	NA
RCC_T3--3	chr19:17687961	A	NA	32	0	32	58.438	12.585	0	0	0	32	0	COLGALT1	intronic	NA
RCC_T3--4	chr19:17687961	A	NA	40	0	40	62.475	7.579	0	0	0	40	0	COLGALT1	intronic	NA
RCC_T3--5	chr19:17687961	A	G	30	0.033	29	57.690	9.758	1	46.000	0.000	29	1	COLGALT1	intronic	NA
RCC_T3--6	chr19:17687961	A	G	19	0.158	16	61.938	7.298	3	49.333	14.572	16	3	COLGALT1	intronic	NA
RCC_T3--7	chr19:17687961	A	G	35	0.029	34	62.088	7.460	1	38.000	0.000	34	1	COLGALT1	intronic	NA
RCC_T3--8	chr19:17687961	A	NA	27	0	27	55.704	12.278	0	0	0	27	0	COLGALT1	intronic	NA
RCC_T3--GL	chr19:17687961	A	NA	35	0	35	61.171	10.351	0	0	0	35	0	COLGALT1	intronic	NA
RCC_T3--1	chr19:17881423	G	NA	21	0	21	65.381	5.380	0	0	0	21	0	FCHO1	intronic	NA
RCC_T3--2	chr19:17881423	G	NA	18	0	18	60.278	13.252	0	0	0	18	0	FCHO1	intronic	NA
RCC_T3--3	chr19:17881423	G	NA	37	0	37	64.135	8.744	0	0	0	37	0	FCHO1	intronic	NA
RCC_T3--4	chr19:17881423	G	NA	25	0	25	64.160	8.430	0	0	0	25	0	FCHO1	intronic	NA
RCC_T3--5	chr19:17881423	G	NA	17	0	17	62.824	9.422	0	0	0	17	0	FCHO1	intronic	NA
RCC_T3--6	chr19:17881423	G	NA	18	0	18	65.444	2.572	0	0	0	18	0	FCHO1	intronic	NA
RCC_T3--7	chr19:17881423	G	A	30	0.133	26	63.038	9.485	4	64.000	2.309	26	4	FCHO1	intronic	NA
RCC_T3--8	chr19:17881423	G	NA	18	0	18	66.889	2.847	0	0	0	18	0	FCHO1	intronic	NA
RCC_T3--GL	chr19:17881423	G	NA	38	0	38	64.026	8.471	0	0	0	38	0	FCHO1	intronic	NA
RCC_T3--1	chr19:1796246	G	NA	29	0	29	65.724	6.375	0	0	0	29	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:1796246	G	NA	27	0	27	67.259	5.620	0	0	0	27	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:1796246	G	A	31	0.129	27	65.667	7.859	4	49.000	12.302	27	4	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:1796246	G	NA	27	0	27	67.741	3.686	0	0	0	27	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:1796246	G	NA	23	0	23	66.522	4.511	0	0	0	23	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:1796246	G	NA	33	0	33	65.485	5.263	0	0	0	33	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:1796246	G	NA	28	0	28	64.571	9.110	0	0	0	28	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:1796246	G	NA	27	0	27	64.852	7.639	0	0	0	27	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:1796246	G	NA	34	0	34	63.676	9.088	0	0	0	34	0	ATP8B3	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:1816461	T	NA	30	0	30	64.900	5.182	0	0	0	30	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:1816461	T	NA	35	0	35	63.371	6.967	0	0	0	35	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:1816461	T	NA	37	0	37	65.054	4.540	0	0	0	37	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:1816461	T	NA	30	0	30	62.933	7.095	0	0	0	30	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:1816461	T	NA	35	0	35	62.543	7.975	0	0	0	35	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:1816461	T	C	26	0.154	22	60.500	9.293	4	67.250	1.893	22	4	REXO1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:1816461	T	NA	19	0	19	59.211	10.768	0	0	0	19	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:1816461	T	NA	30	0	30	63.267	9.296	0	0	0	30	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:1816461	T	NA	37	0	37	63.027	7.719	0	0	0	37	0	REXO1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:19162923	C	NA	36	0	36	65.250	6.531	0	0	0	36	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:19162923	C	T	35	0.114	31	66.968	4.239	4	70.250	1.500	31	4	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:19162923	C	NA	52	0	52	65.750	5.770	0	0	0	52	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:19162923	C	NA	44	0	44	66.023	6.593	0	0	0	44	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:19162923	C	NA	21	0	21	66.762	4.085	0	0	0	21	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:19162923	C	NA	45	0	45	66.444	6.309	0	0	0	45	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:19162923	C	NA	45	0	45	64.467	8.719	0	0	0	45	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:19162923	C	NA	42	0	42	65.976	8.570	0	0	0	42	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:19162923	C	NA	47	0	47	66.404	4.853	0	0	0	47	0	ARMC6	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:19218890	A	NA	33	0	33	66.848	6.965	0	0	0	33	0	SLC25A42	intronic	NA
RCC_T3--2	chr19:19218890	A	NA	38	0	38	68.289	3.631	0	0	0	38	0	SLC25A42	intronic	NA
RCC_T3--3	chr19:19218890	A	NA	22	0	22	67.500	4.818	0	0	0	22	0	SLC25A42	intronic	NA
RCC_T3--4	chr19:19218890	A	NA	38	0	38	67.553	6.233	0	0	0	38	0	SLC25A42	intronic	NA
RCC_T3--5	chr19:19218890	A	NA	47	0	47	66.532	7.110	0	0	0	47	0	SLC25A42	intronic	NA
RCC_T3--6	chr19:19218890	A	T	34	0.029	33	67.424	3.742	1	33.000	0.000	33	1	SLC25A42	intronic	NA
RCC_T3--7	chr19:19218890	A	NA	39	0	39	68.615	3.639	0	0	0	39	0	SLC25A42	intronic	NA
RCC_T3--8	chr19:19218890	A	T	29	0.138	25	66.880	4.343	4	61.500	3.317	25	4	SLC25A42	intronic	NA
RCC_T3--GL	chr19:19218890	A	NA	42	0	42	66.167	5.914	0	0	0	42	0	SLC25A42	intronic	NA
RCC_T3--1	chr19:2130410	G	NA	25	0	25	65.160	8.395	0	0	0	25	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:2130410	G	NA	52	0	52	67.365	3.752	0	0	0	52	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:2130410	G	NA	53	0	53	67.113	5.570	0	0	0	53	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:2130410	G	NA	31	0	31	65.839	9.371	0	0	0	31	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:2130410	G	T	55	0.109	49	66.041	5.408	6	58.500	13.487	49	6	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:2130410	G	NA	46	0	46	66.174	4.620	0	0	0	46	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:2130410	G	NA	55	0	55	66.182	6.242	0	0	0	55	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:2130410	G	NA	49	0	49	64.735	9.411	0	0	0	49	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:2130410	G	NA	66	0	66	63.652	7.968	0	0	0	66	0	AP3D1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:21310669	G	NA	30	0	30	69.100	3.284	0	0	0	30	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--2	chr19:21310669	G	NA	37	0	36	66.417	8.610	0	0	0	36	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--3	chr19:21310669	G	NA	34	0	34	67.559	5.544	0	0	0	34	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--4	chr19:21310669	G	NA	41	0	41	67.537	6.611	0	0	0	41	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--5	chr19:21310669	G	NA	41	0	41	67.732	6.558	0	0	0	41	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--6	chr19:21310669	G	T	33	0.121	29	67.931	3.555	4	67.250	5.500	29	4	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--7	chr19:21310669	G	NA	28	0	28	69.679	2.667	0	0	0	28	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--8	chr19:21310669	G	NA	27	0	27	68.296	6.044	0	0	0	27	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--GL	chr19:21310669	G	NA	36	0	36	67.333	6.024	0	0	0	36	0	ZNF714(dist=2786),ZNF431(dist=14171)	intergenic	NA
RCC_T3--1	chr19:2216706	C	NA	42	0	42	61.119	11.498	0	0	0	42	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:2216706	C	NA	24	0	24	62.167	7.614	0	0	0	24	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:2216706	C	NA	41	0	41	62.512	7.239	0	0	0	41	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:2216706	C	NA	40	0	40	62.975	6.837	0	0	0	40	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:2216706	C	NA	36	0	36	59.722	10.998	0	0	0	36	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:2216706	C	A	29	0.138	25	59.200	10.759	4	59.000	7.439	25	4	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:2216706	C	NA	32	0	32	63.938	8.199	0	0	0	32	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:2216706	C	NA	35	0	35	61.514	9.826	0	0	0	35	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:2216706	C	NA	45	0	45	58.067	11.624	0	0	0	45	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:2217032	C	NA	31	0	31	65.742	3.941	0	0	0	31	0	DOT1L	exonic	synonymous_SNV
RCC_T3--2	chr19:2217032	C	NA	40	0	40	64.725	5.953	0	0	0	40	0	DOT1L	exonic	synonymous_SNV
RCC_T3--3	chr19:2217032	C	T	48	0.125	42	63.310	9.437	6	62.500	3.886	42	6	DOT1L	exonic	synonymous_SNV
RCC_T3--4	chr19:2217032	C	NA	26	0	26	63.615	8.640	0	0	0	26	0	DOT1L	exonic	synonymous_SNV
RCC_T3--5	chr19:2217032	C	NA	26	0	26	65.115	3.351	0	0	0	26	0	DOT1L	exonic	synonymous_SNV
RCC_T3--6	chr19:2217032	C	NA	33	0	33	64.697	7.671	0	0	0	33	0	DOT1L	exonic	synonymous_SNV
RCC_T3--7	chr19:2217032	C	NA	33	0	33	64.576	5.831	0	0	0	33	0	DOT1L	exonic	synonymous_SNV
RCC_T3--8	chr19:2217032	C	NA	27	0	27	63.296	10.114	0	0	0	27	0	DOT1L	exonic	synonymous_SNV
RCC_T3--GL	chr19:2217032	C	NA	53	0	53	63.566	7.999	0	0	0	53	0	DOT1L	exonic	synonymous_SNV
RCC_T3--1	chr19:2226794	A	NA	27	0	27	61.296	7.205	0	0	0	27	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:2226794	A	C	39	0.154	32	56.875	13.416	6	36.333	5.164	32	6	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:2226794	A	C	39	0.026	38	62.711	9.276	1	33.000	0.000	38	1	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:2226794	A	C	26	0.038	25	57.360	7.868	1	36.000	0.000	25	1	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:2226794	A	C	18	0.111	16	56.625	11.695	2	40.500	6.364	16	2	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:2226794	A	C	27	0.037	26	57.846	11.692	1	37.000	0.000	26	1	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:2226794	A	NA	22	0	22	58.364	9.111	0	0	0	22	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:2226794	A	NA	24	0	23	57.870	9.186	0	0	0	23	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:2226794	A	NA	33	0	33	56.000	10.914	0	0	0	33	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:33263754	A	NA	42	0	42	69.381	3.185	0	0	0	42	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:33263754	A	NA	52	0	52	69.231	4.128	0	0	0	52	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:33263754	A	NA	50	0	50	69.860	2.836	0	0	0	50	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:33263754	A	NA	58	0	57	69.211	5.483	0	0	0	57	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:33263754	A	G	30	0.133	26	68.385	3.699	4	70.500	1.915	26	4	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:33263754	A	NA	30	0	30	69.533	2.980	0	0	0	30	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:33263754	A	NA	47	0	47	68.894	3.969	0	0	0	47	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:33263754	A	NA	53	0	53	69.302	3.796	0	0	0	53	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:33263754	A	NA	56	0	56	67.643	4.266	0	0	0	56	0	TDRD12	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:36003280	C	NA	20	0	20	67.600	6.541	0	0	0	20	0	DMKN	intronic	NA
RCC_T3--2	chr19:36003280	C	NA	46	0	46	66.370	6.584	0	0	0	46	0	DMKN	intronic	NA
RCC_T3--3	chr19:36003280	C	NA	41	0	41	65.000	7.839	0	0	0	41	0	DMKN	intronic	NA
RCC_T3--4	chr19:36003280	C	NA	34	0	34	65.588	8.291	0	0	0	34	0	DMKN	intronic	NA
RCC_T3--5	chr19:36003280	C	A	20	0.200	16	66.875	3.897	4	65.250	6.131	16	4	DMKN	intronic	NA
RCC_T3--6	chr19:36003280	C	NA	35	0	35	66.743	4.488	0	0	0	35	0	DMKN	intronic	NA
RCC_T3--7	chr19:36003280	C	NA	32	0	32	65.500	6.016	0	0	0	32	0	DMKN	intronic	NA
RCC_T3--8	chr19:36003280	C	NA	28	0	28	63.000	13.084	0	0	0	28	0	DMKN	intronic	NA
RCC_T3--GL	chr19:36003280	C	NA	36	0	36	66.250	6.199	0	0	0	36	0	DMKN	intronic	NA
RCC_T3--1	chr19:3614474	G	A	21	0.190	17	68.059	2.585	4	70.250	2.872	17	4	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:3614474	G	A	54	0.130	47	64.617	8.784	7	69.286	5.024	47	7	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:3614474	G	A	43	0.233	33	66.727	3.024	10	68.400	2.011	33	10	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:3614474	G	A	46	0.217	36	66.806	3.285	10	66.500	3.779	36	10	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:3614474	G	NA	31	0	31	66.194	9.513	0	0	0	31	0	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:3614474	G	A	35	0.029	34	64.941	7.240	1	66.000	0.000	34	1	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:3614474	G	A	37	0.189	30	65.733	7.812	7	61.429	9.199	30	7	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:3614474	G	A	47	0.191	38	66.816	5.208	9	64.000	11.990	38	9	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:3614474	G	NA	43	0	43	64.070	9.326	0	0	0	43	0	CACTIN	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:36303893	T	NA	24	0	24	62.208	6.776	0	0	0	24	0	PRODH2	intronic	NA
RCC_T3--2	chr19:36303893	T	G	46	0.022	44	60.455	8.329	1	37.000	0.000	44	1	PRODH2	intronic	NA
RCC_T3--3	chr19:36303893	T	NA	41	0	40	58.100	10.066	0	0	0	40	0	PRODH2	intronic	NA
RCC_T3--4	chr19:36303893	T	G	34	0.029	32	58.125	10.853	1	39.000	0.000	32	1	PRODH2	intronic	NA
RCC_T3--5	chr19:36303893	T	G	13	0.231	10	58.900	9.339	3	39.667	4.619	10	3	PRODH2	intronic	NA
RCC_T3--6	chr19:36303893	T	G	26	0.038	25	63.720	7.237	1	33.000	0.000	25	1	PRODH2	intronic	NA
RCC_T3--7	chr19:36303893	T	G	29	0.034	27	59.704	9.750	1	39.000	0.000	27	1	PRODH2	intronic	NA
RCC_T3--8	chr19:36303893	T	NA	33	0	33	60.242	10.229	0	0	0	33	0	PRODH2	intronic	NA
RCC_T3--GL	chr19:36303893	T	NA	43	0	43	59.651	9.131	0	0	0	43	0	PRODH2	intronic	NA
RCC_T3--1	chr19:37316358	A	NA	25	0	25	65.560	4.473	0	0	0	25	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--2	chr19:37316358	A	NA	35	0	35	67.771	5.806	0	0	0	35	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--3	chr19:37316358	A	NA	33	0	33	62.939	8.514	0	0	0	33	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--4	chr19:37316358	A	NA	38	0	38	65.526	6.789	0	0	0	38	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--5	chr19:37316358	A	NA	41	0	41	66.293	4.956	0	0	0	41	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--6	chr19:37316358	A	G	42	0.190	34	65.382	6.941	8	66.500	2.726	34	8	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--7	chr19:37316358	A	NA	46	0	46	66.022	4.702	0	0	0	46	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--8	chr19:37316358	A	NA	43	0	43	62.930	9.932	0	0	0	43	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--GL	chr19:37316358	A	NA	56	0	56	66.536	5.095	0	0	0	56	0	ZNF790-AS1	ncRNA_exonic	NA
RCC_T3--1	chr19:38876103	T	G	24	0.042	22	59.591	12.771	1	38.000	0.000	22	1	GGN	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:38876103	T	G	26	0.038	25	63.480	8.027	1	38.000	0.000	25	1	GGN	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:38876103	T	G	34	0.029	33	63.182	8.472	1	38.000	0.000	33	1	GGN	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:38876103	T	G	27	0.222	21	58.571	12.828	6	36.000	5.292	21	6	GGN	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:38876103	T	G	19	0.105	17	61.529	11.192	2	35.500	3.536	17	2	GGN	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:38876103	T	G	26	0.115	23	61.652	10.692	3	41.667	4.041	23	3	GGN	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:38876103	T	G	21	0.143	18	60.833	7.972	3	34.667	2.887	18	3	GGN	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:38876103	T	NA	16	0	16	64.875	9.415	0	0	0	16	0	GGN	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:38876103	T	NA	33	0	33	60.636	11.288	0	0	0	33	0	GGN	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:39200061	T	C	127	0.213	100	67.140	5.565	27	67.407	5.086	100	27	ACTN4	exonic	synonymous_SNV
RCC_T3--2	chr19:39200061	T	C	155	0.206	123	67.154	6.459	32	66.750	5.055	123	32	ACTN4	exonic	synonymous_SNV
RCC_T3--3	chr19:39200061	T	C	148	0.257	110	65.900	6.876	38	65.921	6.623	110	38	ACTN4	exonic	synonymous_SNV
RCC_T3--4	chr19:39200061	T	C	135	0.200	107	67.280	4.553	27	64.852	9.797	107	27	ACTN4	exonic	synonymous_SNV
RCC_T3--5	chr19:39200061	T	C	165	0.030	160	64.844	7.555	5	66.200	3.493	160	5	ACTN4	exonic	synonymous_SNV
RCC_T3--6	chr19:39200061	T	C	146	0.082	134	66.134	6.296	12	59.917	13.406	134	12	ACTN4	exonic	synonymous_SNV
RCC_T3--7	chr19:39200061	T	C	140	0.243	105	65.419	6.911	34	66.647	4.873	105	34	ACTN4	exonic	synonymous_SNV
RCC_T3--8	chr19:39200061	T	C	135	0.104	121	66.917	5.634	14	64.857	10.769	121	14	ACTN4	exonic	synonymous_SNV
RCC_T3--GL	chr19:39200061	T	NA	142	0	142	65.507	7.415	0	0	0	142	0	ACTN4	exonic	synonymous_SNV
RCC_T3--1	chr19:3979827	G	NA	22	0	22	58.909	13.345	0	0	0	22	0	EEF2	exonic	synonymous_SNV
RCC_T3--2	chr19:3979827	G	NA	24	0	23	60.609	12.048	0	0	0	23	0	EEF2	exonic	synonymous_SNV
RCC_T3--3	chr19:3979827	G	NA	38	0	38	60.921	12.950	0	0	0	38	0	EEF2	exonic	synonymous_SNV
RCC_T3--4	chr19:3979827	G	NA	34	0	34	60.118	11.734	0	0	0	34	0	EEF2	exonic	synonymous_SNV
RCC_T3--5	chr19:3979827	G	A	27	0.148	23	57.130	15.375	4	60.500	7.853	23	4	EEF2	exonic	synonymous_SNV
RCC_T3--6	chr19:3979827	G	NA	15	0	15	61.933	12.470	0	0	0	15	0	EEF2	exonic	synonymous_SNV
RCC_T3--7	chr19:3979827	G	NA	28	0	28	57.679	14.949	0	0	0	28	0	EEF2	exonic	synonymous_SNV
RCC_T3--8	chr19:3979827	G	NA	20	0	20	64.150	9.853	0	0	0	20	0	EEF2	exonic	synonymous_SNV
RCC_T3--GL	chr19:3979827	G	NA	35	0	35	55.514	14.195	0	0	0	35	0	EEF2	exonic	synonymous_SNV
RCC_T3--1	chr19:39924460	C	NA	45	0	45	66.178	4.992	0	0	0	45	0	RPS16	intronic	NA
RCC_T3--2	chr19:39924460	C	NA	41	0	41	65.732	7.096	0	0	0	41	0	RPS16	intronic	NA
RCC_T3--3	chr19:39924460	C	NA	59	0	59	65.203	7.165	0	0	0	59	0	RPS16	intronic	NA
RCC_T3--4	chr19:39924460	C	NA	54	0	54	67.667	5.032	0	0	0	54	0	RPS16	intronic	NA
RCC_T3--5	chr19:39924460	C	NA	38	0	38	66.132	5.168	0	0	0	38	0	RPS16	intronic	NA
RCC_T3--6	chr19:39924460	C	A	45	0.133	39	67.128	3.310	6	66.167	2.787	39	6	RPS16	intronic	NA
RCC_T3--7	chr19:39924460	C	NA	53	0	53	65.642	6.089	0	0	0	53	0	RPS16	intronic	NA
RCC_T3--8	chr19:39924460	C	NA	63	0	63	65.984	6.551	0	0	0	63	0	RPS16	intronic	NA
RCC_T3--GL	chr19:39924460	C	NA	56	0	56	66.643	3.919	0	0	0	56	0	RPS16	intronic	NA
RCC_T3--1	chr19:39926548	G	NA	21	0	21	64.238	4.381	0	0	0	21	0	RPS16	UTR5	NA
RCC_T3--2	chr19:39926548	G	NA	35	0	35	65.571	3.829	0	0	0	35	0	RPS16	UTR5	NA
RCC_T3--3	chr19:39926548	G	NA	37	0	37	65.811	4.551	0	0	0	37	0	RPS16	UTR5	NA
RCC_T3--4	chr19:39926548	G	NA	39	0	39	63.923	7.158	0	0	0	39	0	RPS16	UTR5	NA
RCC_T3--5	chr19:39926548	G	A	35	0.114	31	62.903	8.650	4	66.750	0.500	31	4	RPS16	UTR5	NA
RCC_T3--6	chr19:39926548	G	NA	36	0	36	63.139	7.537	0	0	0	36	0	RPS16	UTR5	NA
RCC_T3--7	chr19:39926548	G	NA	31	0	31	65.742	4.025	0	0	0	31	0	RPS16	UTR5	NA
RCC_T3--8	chr19:39926548	G	NA	47	0	47	64.064	8.208	0	0	0	47	0	RPS16	UTR5	NA
RCC_T3--GL	chr19:39926548	G	NA	41	0	41	62.293	9.328	0	0	0	41	0	RPS16	UTR5	NA
RCC_T3--1	chr19:39994903	C	NA	32	0	32	67.281	4.379	0	0	0	32	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:39994903	C	NA	30	0	30	66.767	6.151	0	0	0	30	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:39994903	C	A	34	0.176	28	68.393	4.984	6	62.500	4.764	28	6	DLL3	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:39994903	C	NA	47	0	47	67.447	4.303	0	0	0	47	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:39994903	C	NA	30	0	29	63.897	9.511	0	0	0	29	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:39994903	C	NA	36	0	36	64.833	6.522	0	0	0	36	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:39994903	C	NA	33	0	33	61.970	12.489	0	0	0	33	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:39994903	C	NA	50	0	50	66.700	6.208	0	0	0	50	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:39994903	C	NA	47	0	47	66.787	6.708	0	0	0	47	0	DLL3	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:40357567	G	NA	50	0	50	66.340	6.760	0	0	0	50	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:40357567	G	NA	58	0	58	64.655	8.544	0	0	0	58	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:40357567	G	NA	57	0	57	65.474	7.182	0	0	0	57	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:40357567	G	NA	53	0	53	66.453	5.330	0	0	0	53	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:40357567	G	NA	46	0	46	62.783	10.110	0	0	0	46	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:40357567	G	NA	36	0	36	67.611	8.374	0	0	0	36	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:40357567	G	A	56	0.107	50	65.260	8.270	6	59.667	9.973	50	6	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:40357567	G	NA	51	0	51	64.922	8.811	0	0	0	51	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:40357567	G	NA	76	0	76	62.724	9.816	0	0	0	76	0	FCGBP	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:40408657	G	NA	58	0	58	64.259	10.425	0	0	0	58	0	FCGBP	exonic	synonymous_SNV
RCC_T3--2	chr19:40408657	G	NA	73	0	73	63.260	10.391	0	0	0	73	0	FCGBP	exonic	synonymous_SNV
RCC_T3--3	chr19:40408657	G	NA	87	0	87	66.368	5.597	0	0	0	87	0	FCGBP	exonic	synonymous_SNV
RCC_T3--4	chr19:40408657	G	A	73	0.110	65	66.738	5.529	8	69.750	0.707	65	8	FCGBP	exonic	synonymous_SNV
RCC_T3--5	chr19:40408657	G	NA	72	0	72	65.083	7.816	0	0	0	72	0	FCGBP	exonic	synonymous_SNV
RCC_T3--6	chr19:40408657	G	NA	70	0	70	63.286	8.676	0	0	0	70	0	FCGBP	exonic	synonymous_SNV
RCC_T3--7	chr19:40408657	G	NA	76	0	76	66.197	6.310	0	0	0	76	0	FCGBP	exonic	synonymous_SNV
RCC_T3--8	chr19:40408657	G	NA	97	0	97	66.031	5.112	0	0	0	97	0	FCGBP	exonic	synonymous_SNV
RCC_T3--GL	chr19:40408657	G	NA	56	0	56	62.696	9.079	0	0	0	56	0	FCGBP	exonic	synonymous_SNV
RCC_T3--1	chr19:44153106	A	NA	34	0	34	66.912	3.432	0	0	0	34	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:44153106	A	NA	51	0	51	66.608	5.762	0	0	0	51	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:44153106	A	NA	51	0	51	66.882	4.752	0	0	0	51	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:44153106	A	NA	42	0	42	66.738	5.189	0	0	0	42	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:44153106	A	G	47	0.128	41	65.780	6.006	6	68.500	2.881	41	6	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:44153106	A	NA	33	0	33	65.091	7.430	0	0	0	33	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:44153106	A	NA	40	0	40	68.075	3.489	0	0	0	40	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:44153106	A	NA	62	0	61	66.934	5.597	0	0	0	61	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:44153106	A	NA	72	0	72	63.250	7.831	0	0	0	72	0	PLAUR	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:44280730	A	NA	59	0	59	65.797	6.477	0	0	0	59	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:44280730	A	NA	60	0	60	65.183	7.324	0	0	0	60	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:44280730	A	NA	35	0	35	65.343	4.789	0	0	0	35	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:44280730	A	T	67	0.015	66	65.333	7.416	1	71.000	0.000	66	1	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:44280730	A	NA	40	0	40	65.550	5.688	0	0	0	40	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:44280730	A	T	36	0.111	32	63.281	6.331	4	62.000	10.551	32	4	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:44280730	A	NA	51	0	51	67.275	3.747	0	0	0	51	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:44280730	A	NA	43	0	43	65.465	8.040	0	0	0	43	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:44280730	A	NA	40	0	40	62.075	9.986	0	0	0	40	0	KCNN4	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:45161056	C	NA	34	0	34	65.882	5.968	0	0	0	34	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:45161056	C	T	50	0.120	44	67.045	6.387	6	62.667	7.005	44	6	PVR	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:45161056	C	NA	30	0	30	67.733	4.160	0	0	0	30	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:45161056	C	NA	49	0	49	66.551	6.272	0	0	0	49	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:45161056	C	NA	50	0	50	67.220	6.316	0	0	0	50	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:45161056	C	NA	41	0	41	67.049	4.171	0	0	0	41	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:45161056	C	NA	45	0	45	67.200	5.221	0	0	0	45	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:45161056	C	NA	54	0	54	67.093	4.594	0	0	0	54	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:45161056	C	NA	67	0	67	66.015	5.892	0	0	0	67	0	PVR	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:45404373	C	NA	37	0	37	64.216	10.188	0	0	0	37	0	TOMM40	intronic	NA
RCC_T3--2	chr19:45404373	C	T	38	0.053	36	62.417	12.006	2	66.000	0.000	36	2	TOMM40	intronic	NA
RCC_T3--3	chr19:45404373	C	NA	40	0	40	64.525	6.520	0	0	0	40	0	TOMM40	intronic	NA
RCC_T3--4	chr19:45404373	C	T	34	0.176	28	68.214	3.468	6	59.000	14.478	28	6	TOMM40	intronic	NA
RCC_T3--5	chr19:45404373	C	T	45	0.022	44	62.250	9.817	1	66.000	0.000	44	1	TOMM40	intronic	NA
RCC_T3--6	chr19:45404373	C	NA	49	0	49	65.592	5.526	0	0	0	49	0	TOMM40	intronic	NA
RCC_T3--7	chr19:45404373	C	NA	56	0	56	65.179	7.739	0	0	0	56	0	TOMM40	intronic	NA
RCC_T3--8	chr19:45404373	C	NA	47	0	47	65.532	7.289	0	0	0	47	0	TOMM40	intronic	NA
RCC_T3--GL	chr19:45404373	C	NA	48	0	48	66.667	4.264	0	0	0	48	0	TOMM40	intronic	NA
RCC_T3--1	chr19:4550269	T	NA	23	0	23	61.957	10.034	0	0	0	23	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--2	chr19:4550269	T	NA	27	0	27	61.185	9.228	0	0	0	27	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--3	chr19:4550269	T	NA	41	0	40	58.250	12.152	0	0	0	40	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--4	chr19:4550269	T	NA	30	0	30	57.967	11.828	0	0	0	30	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--5	chr19:4550269	T	NA	23	0	23	61.435	10.496	0	0	0	23	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--6	chr19:4550269	T	C	30	0.133	25	59.880	12.377	4	62.500	4.726	25	4	SEMA6B	exonic	synonymous_SNV
RCC_T3--7	chr19:4550269	T	NA	25	0	25	59.640	9.137	0	0	0	25	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--8	chr19:4550269	T	NA	39	0	39	60.359	10.472	0	0	0	39	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--GL	chr19:4550269	T	NA	41	0	41	61.439	8.930	0	0	0	41	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--1	chr19:4550278	C	NA	22	0	22	64.091	7.904	0	0	0	22	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--2	chr19:4550278	C	NA	28	0	28	65.571	7.300	0	0	0	28	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--3	chr19:4550278	C	NA	39	0	39	62.769	10.537	0	0	0	39	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--4	chr19:4550278	C	NA	29	0	29	62.621	10.066	0	0	0	29	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--5	chr19:4550278	C	NA	22	0	22	64.909	5.468	0	0	0	22	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--6	chr19:4550278	C	NA	23	0	23	65.000	9.045	0	0	0	23	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--7	chr19:4550278	C	T	26	0.154	22	65.409	5.124	4	60.750	4.992	22	4	SEMA6B	exonic	synonymous_SNV
RCC_T3--8	chr19:4550278	C	NA	39	0	39	63.692	8.411	0	0	0	39	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--GL	chr19:4550278	C	NA	42	0	42	62.214	10.681	0	0	0	42	0	SEMA6B	exonic	synonymous_SNV
RCC_T3--1	chr19:49225234	C	NA	41	0	41	61.683	10.704	0	0	0	41	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:49225234	C	NA	42	0	42	63.143	10.328	0	0	0	42	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:49225234	C	NA	57	0	57	62.035	8.936	0	0	0	57	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:49225234	C	NA	46	0	46	65.283	7.185	0	0	0	46	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:49225234	C	NA	43	0	43	60.395	9.439	0	0	0	43	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:49225234	C	T	36	0.167	30	60.167	10.262	6	61.667	3.882	30	6	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:49225234	C	NA	43	0	42	64.190	8.549	0	0	0	42	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:49225234	C	NA	50	0	50	60.360	10.253	0	0	0	50	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:49225234	C	NA	50	0	49	59.510	11.046	0	0	0	49	0	RASIP1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:49303467	A	NA	17	0	17	65.882	4.241	0	0	0	17	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:49303467	A	NA	46	0	46	59.891	10.596	0	0	0	46	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:49303467	A	NA	43	0	43	59.116	11.333	0	0	0	43	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:49303467	A	NA	37	0	37	62.081	9.358	0	0	0	37	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:49303467	A	G	25	0.200	20	62.500	10.118	5	67.600	0.894	20	5	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:49303467	A	NA	26	0	26	65.462	7.659	0	0	0	26	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:49303467	A	NA	45	0	45	59.800	11.954	0	0	0	45	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:49303467	A	NA	38	0	38	62.842	7.115	0	0	0	38	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:49303467	A	NA	40	0	39	61.231	9.471	0	0	0	39	0	BCAT2	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:49340765	C	NA	27	0	27	61.222	9.557	0	0	0	27	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--2	chr19:49340765	C	NA	37	0	37	64.514	6.927	0	0	0	37	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--3	chr19:49340765	C	NA	40	0	40	64.650	8.313	0	0	0	40	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--4	chr19:49340765	C	NA	23	0	23	62.913	7.827	0	0	0	23	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--5	chr19:49340765	C	NA	27	0	27	61.444	10.040	0	0	0	27	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--6	chr19:49340765	C	NA	24	0	24	64.958	7.771	0	0	0	24	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--7	chr19:49340765	C	NA	41	0	41	65.220	7.192	0	0	0	41	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--8	chr19:49340765	C	T	33	0.121	29	64.586	6.684	4	64.250	7.182	29	4	PLEKHA4	exonic	synonymous_SNV
RCC_T3--GL	chr19:49340765	C	NA	38	0	38	65.474	4.464	0	0	0	38	0	PLEKHA4	exonic	synonymous_SNV
RCC_T3--1	chr19:49399622	C	T	25	0.080	22	64.318	9.146	2	53.500	4.950	22	2	TULP2	intronic	NA
RCC_T3--2	chr19:49399622	C	NA	25	0	25	65.400	9.579	0	0	0	25	0	TULP2	intronic	NA
RCC_T3--3	chr19:49399622	C	NA	30	0	30	68.333	2.695	0	0	0	30	0	TULP2	intronic	NA
RCC_T3--4	chr19:49399622	C	T	34	0.118	30	61.933	9.976	4	60.250	16.256	30	4	TULP2	intronic	NA
RCC_T3--5	chr19:49399622	C	NA	37	0	37	64.243	8.385	0	0	0	37	0	TULP2	intronic	NA
RCC_T3--6	chr19:49399622	C	NA	50	0	50	65.700	6.062	0	0	0	50	0	TULP2	intronic	NA
RCC_T3--7	chr19:49399622	C	NA	42	0	42	64.357	9.450	0	0	0	42	0	TULP2	intronic	NA
RCC_T3--8	chr19:49399622	C	NA	43	0	43	64.605	6.091	0	0	0	43	0	TULP2	intronic	NA
RCC_T3--GL	chr19:49399622	C	NA	59	0	59	62.508	9.730	0	0	0	59	0	TULP2	intronic	NA
RCC_T3--1	chr19:49436940	T	NA	14	0	14	65.643	3.500	0	0	0	14	0	DHDH	UTR5	NA
RCC_T3--2	chr19:49436940	T	NA	29	0	29	63.172	7.329	0	0	0	29	0	DHDH	UTR5	NA
RCC_T3--3	chr19:49436940	T	NA	32	0	32	62.625	7.499	0	0	0	32	0	DHDH	UTR5	NA
RCC_T3--4	chr19:49436940	T	NA	34	0	34	63.324	7.202	0	0	0	34	0	DHDH	UTR5	NA
RCC_T3--5	chr19:49436940	T	G	32	0.125	28	63.571	8.007	4	63.500	3.000	28	4	DHDH	UTR5	NA
RCC_T3--6	chr19:49436940	T	NA	24	0	24	65.417	7.950	0	0	0	24	0	DHDH	UTR5	NA
RCC_T3--7	chr19:49436940	T	NA	20	0	20	65.400	5.452	0	0	0	20	0	DHDH	UTR5	NA
RCC_T3--8	chr19:49436940	T	NA	30	0	30	64.333	7.222	0	0	0	30	0	DHDH	UTR5	NA
RCC_T3--GL	chr19:49436940	T	NA	34	0	33	62.636	7.457	0	0	0	33	0	DHDH	UTR5	NA
RCC_T3--1	chr19:49488659	C	NA	14	0	14	68.857	2.852	0	0	0	14	0	GYS1	intronic	NA
RCC_T3--2	chr19:49488659	C	NA	38	0	38	65.842	7.893	0	0	0	38	0	GYS1	intronic	NA
RCC_T3--3	chr19:49488659	C	NA	37	0	37	67.135	3.787	0	0	0	37	0	GYS1	intronic	NA
RCC_T3--4	chr19:49488659	C	NA	28	0	28	68.250	7.352	0	0	0	28	0	GYS1	intronic	NA
RCC_T3--5	chr19:49488659	C	A	24	0.167	20	64.950	10.913	4	63.750	5.560	20	4	GYS1	intronic	NA
RCC_T3--6	chr19:49488659	C	NA	24	0	24	63.250	10.650	0	0	0	24	0	GYS1	intronic	NA
RCC_T3--7	chr19:49488659	C	NA	21	0	21	65.238	8.654	0	0	0	21	0	GYS1	intronic	NA
RCC_T3--8	chr19:49488659	C	NA	32	0	32	67.125	4.218	0	0	0	32	0	GYS1	intronic	NA
RCC_T3--GL	chr19:49488659	C	NA	44	0	43	65.721	8.792	0	0	0	43	0	GYS1	intronic	NA
RCC_T3--1	chr19:49651507	C	NA	18	0	18	67.111	3.530	0	0	0	18	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:49651507	C	NA	46	0	46	66.326	6.070	0	0	0	46	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:49651507	C	A	43	0.140	37	64.919	7.577	6	60.833	14.190	37	6	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:49651507	C	NA	41	0	41	64.244	8.634	0	0	0	41	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:49651507	C	NA	43	0	43	62.721	11.020	0	0	0	43	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:49651507	C	NA	40	0	40	62.250	8.938	0	0	0	40	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:49651507	C	NA	38	0	38	65.447	6.185	0	0	0	38	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:49651507	C	NA	39	0	39	61.256	9.363	0	0	0	39	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:49651507	C	NA	52	0	52	63.577	10.526	0	0	0	52	0	PPFIA3	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:49937007	G	NA	39	0	39	64.769	6.873	0	0	0	39	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--2	chr19:49937007	G	NA	57	0	57	64.351	5.799	0	0	0	57	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--3	chr19:49937007	G	NA	60	0	60	62.600	8.662	0	0	0	60	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--4	chr19:49937007	G	NA	60	0	59	62.678	8.885	0	0	0	59	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--5	chr19:49937007	G	NA	33	0	33	63.394	7.842	0	0	0	33	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--6	chr19:49937007	G	A	53	0.113	47	62.085	9.820	6	61.667	3.445	47	6	SLC17A7	exonic	synonymous_SNV
RCC_T3--7	chr19:49937007	G	NA	44	0	44	63.295	8.454	0	0	0	44	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--8	chr19:49937007	G	NA	44	0	43	63.442	7.617	0	0	0	43	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--GL	chr19:49937007	G	NA	44	0	44	62.045	8.736	0	0	0	44	0	SLC17A7	exonic	synonymous_SNV
RCC_T3--1	chr19:50302769	C	NA	24	0	24	63.708	6.604	0	0	0	24	0	AP2A1	intronic	NA
RCC_T3--2	chr19:50302769	C	T	37	0.108	33	64.545	7.795	4	67.250	2.630	33	4	AP2A1	intronic	NA
RCC_T3--3	chr19:50302769	C	NA	23	0	23	65.565	4.907	0	0	0	23	0	AP2A1	intronic	NA
RCC_T3--4	chr19:50302769	C	NA	38	0	38	63.816	8.605	0	0	0	38	0	AP2A1	intronic	NA
RCC_T3--5	chr19:50302769	C	NA	31	0	31	63.548	8.594	0	0	0	31	0	AP2A1	intronic	NA
RCC_T3--6	chr19:50302769	C	NA	30	0	30	64.467	7.700	0	0	0	30	0	AP2A1	intronic	NA
RCC_T3--7	chr19:50302769	C	NA	31	0	31	64.323	8.424	0	0	0	31	0	AP2A1	intronic	NA
RCC_T3--8	chr19:50302769	C	NA	49	0	49	63.490	7.237	0	0	0	49	0	AP2A1	intronic	NA
RCC_T3--GL	chr19:50302769	C	NA	43	0	43	62.953	7.755	0	0	0	43	0	AP2A1	intronic	NA
RCC_T3--1	chr19:50304798	C	NA	33	0	33	65.818	7.401	0	0	0	33	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:50304798	C	NA	39	0	38	66.289	5.422	0	0	0	38	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:50304798	C	NA	60	0	60	63.733	9.165	0	0	0	60	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:50304798	C	NA	26	0	26	64.231	5.922	0	0	0	26	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:50304798	C	A	26	0.154	22	64.545	6.913	4	70.750	1.258	22	4	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:50304798	C	NA	54	0	54	60.685	11.298	0	0	0	54	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:50304798	C	NA	37	0	37	63.297	6.670	0	0	0	37	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:50304798	C	NA	38	0	38	64.342	9.716	0	0	0	38	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:50304798	C	NA	52	0	52	62.288	10.038	0	0	0	52	0	AP2A1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:50735387	G	NA	15	0	15	68.067	4.301	0	0	0	15	0	MYH14	intronic	NA
RCC_T3--2	chr19:50735387	G	NA	22	0	22	68.727	4.061	0	0	0	22	0	MYH14	intronic	NA
RCC_T3--3	chr19:50735387	G	NA	36	0	36	67.083	3.901	0	0	0	36	0	MYH14	intronic	NA
RCC_T3--4	chr19:50735387	G	NA	21	0	21	68.190	4.434	0	0	0	21	0	MYH14	intronic	NA
RCC_T3--5	chr19:50735387	G	NA	11	0	11	66.273	5.120	0	0	0	11	0	MYH14	intronic	NA
RCC_T3--6	chr19:50735387	G	NA	21	0	21	65.000	11.023	0	0	0	21	0	MYH14	intronic	NA
RCC_T3--7	chr19:50735387	G	NA	17	0	17	67.235	7.934	0	0	0	17	0	MYH14	intronic	NA
RCC_T3--8	chr19:50735387	G	T	28	0.143	24	68.417	3.955	4	57.750	11.413	24	4	MYH14	intronic	NA
RCC_T3--GL	chr19:50735387	G	NA	35	0	34	66.471	5.748	0	0	0	34	0	MYH14	intronic	NA
RCC_T3--1	chr19:50953997	C	NA	15	0	15	67.133	4.207	0	0	0	15	0	MYBPC2	intronic	NA
RCC_T3--2	chr19:50953997	C	NA	22	0	22	67.455	3.961	0	0	0	22	0	MYBPC2	intronic	NA
RCC_T3--3	chr19:50953997	C	NA	26	0	26	66.423	7.295	0	0	0	26	0	MYBPC2	intronic	NA
RCC_T3--4	chr19:50953997	C	NA	20	0	20	67.600	3.440	0	0	0	20	0	MYBPC2	intronic	NA
RCC_T3--5	chr19:50953997	C	A	20	0.300	14	69.214	3.167	6	59.833	10.381	14	6	MYBPC2	intronic	NA
RCC_T3--6	chr19:50953997	C	NA	15	0	15	66.200	4.459	0	0	0	15	0	MYBPC2	intronic	NA
RCC_T3--7	chr19:50953997	C	NA	29	0	29	65.345	8.217	0	0	0	29	0	MYBPC2	intronic	NA
RCC_T3--8	chr19:50953997	C	NA	18	0	18	68.500	3.167	0	0	0	18	0	MYBPC2	intronic	NA
RCC_T3--GL	chr19:50953997	C	NA	38	0	38	66.684	4.927	0	0	0	38	0	MYBPC2	intronic	NA
RCC_T3--1	chr19:51013554	C	NA	28	0	28	65.500	7.715	0	0	0	28	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:51013554	C	NA	32	0	32	66.812	6.270	0	0	0	32	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:51013554	C	NA	30	0	30	64.633	9.107	0	0	0	30	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:51013554	C	A	34	0.118	30	65.067	7.882	4	64.250	3.096	30	4	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:51013554	C	NA	31	0	31	65.516	5.567	0	0	0	31	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:51013554	C	NA	21	0	21	64.810	5.372	0	0	0	21	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:51013554	C	NA	18	0	18	64.722	8.830	0	0	0	18	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:51013554	C	NA	24	0	24	67.000	5.225	0	0	0	24	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:51013554	C	NA	33	0	33	62.121	11.469	0	0	0	33	0	JOSD2	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:51217136	C	NA	42	0	42	63.310	9.169	0	0	0	42	0	SHANK1	exonic	synonymous_SNV
RCC_T3--2	chr19:51217136	C	T	42	0.143	36	64.667	7.750	6	60.000	8.532	36	6	SHANK1	exonic	synonymous_SNV
RCC_T3--3	chr19:51217136	C	NA	31	0	31	63.484	9.753	0	0	0	31	0	SHANK1	exonic	synonymous_SNV
RCC_T3--4	chr19:51217136	C	NA	37	0	37	63.703	9.321	0	0	0	37	0	SHANK1	exonic	synonymous_SNV
RCC_T3--5	chr19:51217136	C	NA	24	0	24	63.417	8.209	0	0	0	24	0	SHANK1	exonic	synonymous_SNV
RCC_T3--6	chr19:51217136	C	NA	23	0	23	61.696	8.720	0	0	0	23	0	SHANK1	exonic	synonymous_SNV
RCC_T3--7	chr19:51217136	C	NA	36	0	36	66.361	3.539	0	0	0	36	0	SHANK1	exonic	synonymous_SNV
RCC_T3--8	chr19:51217136	C	NA	31	0	31	66.323	5.003	0	0	0	31	0	SHANK1	exonic	synonymous_SNV
RCC_T3--GL	chr19:51217136	C	NA	62	0	62	64.210	8.784	0	0	0	62	0	SHANK1	exonic	synonymous_SNV
RCC_T3--1	chr19:5131368	C	NA	30	0	30	66.567	3.588	0	0	0	30	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:5131368	C	T	39	0.026	38	64.132	8.640	1	46.000	0.000	38	1	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:5131368	C	NA	31	0	31	66.065	3.991	0	0	0	31	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:5131368	C	T	21	0.190	17	67.294	3.670	4	62.750	2.754	17	4	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:5131368	C	NA	23	0	23	58.739	12.429	0	0	0	23	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:5131368	C	NA	26	0	26	65.308	7.929	0	0	0	26	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:5131368	C	T	30	0.067	28	64.250	7.555	2	63.000	7.071	28	2	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:5131368	C	NA	45	0	45	63.600	9.406	0	0	0	45	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:5131368	C	NA	49	0	49	63.163	8.623	0	0	0	49	0	KDM4B	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:51321696	G	NA	30	0	30	66.133	3.693	0	0	0	30	0	MGC45922	ncRNA_exonic	NA
RCC_T3--2	chr19:51321696	G	NA	28	0	28	64.929	5.025	0	0	0	28	0	MGC45922	ncRNA_exonic	NA
RCC_T3--3	chr19:51321696	G	NA	40	0	40	65.350	7.124	0	0	0	40	0	MGC45922	ncRNA_exonic	NA
RCC_T3--4	chr19:51321696	G	NA	29	0	29	67.621	3.840	0	0	0	29	0	MGC45922	ncRNA_exonic	NA
RCC_T3--5	chr19:51321696	G	A	21	0.286	15	62.467	9.963	6	61.833	3.545	15	6	MGC45922	ncRNA_exonic	NA
RCC_T3--6	chr19:51321696	G	NA	24	0	24	66.167	5.738	0	0	0	24	0	MGC45922	ncRNA_exonic	NA
RCC_T3--7	chr19:51321696	G	NA	32	0	32	65.406	5.763	0	0	0	32	0	MGC45922	ncRNA_exonic	NA
RCC_T3--8	chr19:51321696	G	NA	30	0	30	68.100	2.881	0	0	0	30	0	MGC45922	ncRNA_exonic	NA
RCC_T3--GL	chr19:51321696	G	NA	43	0	43	64.535	7.059	0	0	0	43	0	MGC45922	ncRNA_exonic	NA
RCC_T3--1	chr19:51330437	T	C	33	0.121	28	56.000	11.232	4	37.250	4.193	28	4	KLK15	intronic	NA
RCC_T3--2	chr19:51330437	T	NA	32	0	32	56.031	11.329	0	0	0	32	0	KLK15	intronic	NA
RCC_T3--3	chr19:51330437	T	C	35	0.171	29	55.724	12.253	6	35.667	5.203	29	6	KLK15	intronic	NA
RCC_T3--4	chr19:51330437	T	C	39	0.051	37	55.892	12.233	2	36.500	0.707	37	2	KLK15	intronic	NA
RCC_T3--5	chr19:51330437	T	C	30	0.100	27	54.296	10.989	3	46.000	14.731	27	3	KLK15	intronic	NA
RCC_T3--6	chr19:51330437	T	C	30	0.167	25	53.280	12.270	5	34.800	1.643	25	5	KLK15	intronic	NA
RCC_T3--7	chr19:51330437	T	C	37	0.027	36	58.250	9.225	1	51.000	0.000	36	1	KLK15	intronic	NA
RCC_T3--8	chr19:51330437	T	C	54	0.204	43	54.047	12.488	11	35.000	3.033	43	11	KLK15	intronic	NA
RCC_T3--GL	chr19:51330437	T	NA	34	0	34	55.088	12.408	0	0	0	34	0	KLK15	intronic	NA
RCC_T3--1	chr19:52095893	G	A	174	0.230	133	68.323	5.777	40	68.925	3.744	133	40	FLJ30403	ncRNA_exonic	NA
RCC_T3--2	chr19:52095893	G	A	172	0.169	143	68.888	3.691	29	69.103	3.885	143	29	FLJ30403	ncRNA_exonic	NA
RCC_T3--3	chr19:52095893	G	A	214	0.294	151	68.510	4.834	63	68.095	5.639	151	63	FLJ30403	ncRNA_exonic	NA
RCC_T3--4	chr19:52095893	G	A	177	0.192	143	68.476	3.932	34	67.824	7.242	143	34	FLJ30403	ncRNA_exonic	NA
RCC_T3--5	chr19:52095893	G	A	146	0.062	137	68.365	4.619	9	68.222	1.716	137	9	FLJ30403	ncRNA_exonic	NA
RCC_T3--6	chr19:52095893	G	A	209	0.086	191	67.571	5.041	18	64.389	8.799	191	18	FLJ30403	ncRNA_exonic	NA
RCC_T3--7	chr19:52095893	G	A	234	0.274	170	67.871	5.535	64	69.234	4.767	170	64	FLJ30403	ncRNA_exonic	NA
RCC_T3--8	chr19:52095893	G	A	202	0.228	156	68.801	5.513	46	68.935	3.505	156	46	FLJ30403	ncRNA_exonic	NA
RCC_T3--GL	chr19:52095893	G	NA	232	0	232	67.513	4.734	0	0	0	232	0	FLJ30403	ncRNA_exonic	NA
RCC_T3--1	chr19:53381333	G	NA	26	0	26	67.154	5.781	0	0	0	26	0	ZNF320	UTR3	NA
RCC_T3--2	chr19:53381333	G	T	22	0.182	18	69.556	3.091	4	66.000	1.155	18	4	ZNF320	UTR3	NA
RCC_T3--3	chr19:53381333	G	NA	22	0	22	68.455	2.857	0	0	0	22	0	ZNF320	UTR3	NA
RCC_T3--4	chr19:53381333	G	NA	29	0	29	67.897	3.639	0	0	0	29	0	ZNF320	UTR3	NA
RCC_T3--5	chr19:53381333	G	NA	15	0	15	66.600	4.748	0	0	0	15	0	ZNF320	UTR3	NA
RCC_T3--6	chr19:53381333	G	NA	24	0	24	68.792	4.736	0	0	0	24	0	ZNF320	UTR3	NA
RCC_T3--7	chr19:53381333	G	NA	24	0	24	69.208	3.706	0	0	0	24	0	ZNF320	UTR3	NA
RCC_T3--8	chr19:53381333	G	NA	37	0	37	69.405	2.443	0	0	0	37	0	ZNF320	UTR3	NA
RCC_T3--GL	chr19:53381333	G	NA	38	0	38	68.105	3.286	0	0	0	38	0	ZNF320	UTR3	NA
RCC_T3--1	chr19:53418805	G	NA	18	0	17	68.529	3.555	0	0	0	17	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--2	chr19:53418805	G	NA	24	0	24	68.125	3.722	0	0	0	24	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--3	chr19:53418805	G	NA	20	0	20	68.400	4.321	0	0	0	20	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--4	chr19:53418805	G	A	23	0.043	22	67.455	3.377	1	70.000	0.000	22	1	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--5	chr19:53418805	G	NA	14	0	14	66.143	5.816	0	0	0	14	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--6	chr19:53418805	G	A	16	0.188	13	68.154	2.853	3	63.000	1.732	13	3	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--7	chr19:53418805	G	NA	17	0	17	68.412	3.985	0	0	0	17	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--8	chr19:53418805	G	NA	27	0	27	67.852	3.505	0	0	0	27	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--GL	chr19:53418805	G	NA	36	0	36	66.306	7.119	0	0	0	36	0	ZNF320(dist=24206),ZNF816-ZNF321P(dist=11583)	intergenic	NA
RCC_T3--1	chr19:54611421	T	NA	15	0	15	65.400	3.418	0	0	0	15	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:54611421	T	C	37	0.108	33	64.152	7.475	4	62.250	4.500	33	4	TFPT	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:54611421	T	NA	22	0	22	62.227	4.669	0	0	0	22	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:54611421	T	NA	20	0	20	63.400	6.176	0	0	0	20	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:54611421	T	NA	21	0	21	61.048	9.851	0	0	0	21	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:54611421	T	NA	23	0	23	61.826	7.992	0	0	0	23	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:54611421	T	NA	28	0	28	63.464	4.749	0	0	0	28	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:54611421	T	NA	28	0	28	63.679	6.098	0	0	0	28	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:54611421	T	NA	33	0	33	61.303	10.297	0	0	0	33	0	TFPT	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:54611654	G	NA	32	0	31	65.645	4.889	0	0	0	31	0	TFPT	exonic	synonymous_SNV
RCC_T3--2	chr19:54611654	G	NA	30	0	30	65.067	8.570	0	0	0	30	0	TFPT	exonic	synonymous_SNV
RCC_T3--3	chr19:54611654	G	NA	23	0	23	61.522	10.277	0	0	0	23	0	TFPT	exonic	synonymous_SNV
RCC_T3--4	chr19:54611654	G	NA	31	0	31	66.065	7.174	0	0	0	31	0	TFPT	exonic	synonymous_SNV
RCC_T3--5	chr19:54611654	G	A	19	0.053	18	66.611	3.973	1	64.000	0.000	18	1	TFPT	exonic	synonymous_SNV
RCC_T3--6	chr19:54611654	G	A	28	0.071	26	65.769	5.279	2	69.000	4.243	26	2	TFPT	exonic	synonymous_SNV
RCC_T3--7	chr19:54611654	G	NA	23	0	23	65.522	8.067	0	0	0	23	0	TFPT	exonic	synonymous_SNV
RCC_T3--8	chr19:54611654	G	A	30	0.133	26	66.500	5.070	4	67.000	1.155	26	4	TFPT	exonic	synonymous_SNV
RCC_T3--GL	chr19:54611654	G	NA	35	0	35	65.771	8.200	0	0	0	35	0	TFPT	exonic	synonymous_SNV
RCC_T3--1	chr19:55494078	C	NA	37	0	37	66.162	6.805	0	0	0	37	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:55494078	C	NA	29	0	29	66.172	5.935	0	0	0	29	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:55494078	C	NA	28	0	28	66.607	5.744	0	0	0	28	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:55494078	C	NA	40	0	40	65.450	7.400	0	0	0	40	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:55494078	C	NA	25	0	25	66.040	7.480	0	0	0	25	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:55494078	C	A	27	0.296	19	63.421	8.481	8	59.000	11.352	19	8	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:55494078	C	NA	34	0	34	66.118	4.471	0	0	0	34	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:55494078	C	NA	39	0	39	63.692	9.420	0	0	0	39	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:55494078	C	NA	52	0	52	64.346	9.725	0	0	0	52	0	NLRP2	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:56108985	C	NA	29	0	29	63.552	9.478	0	0	0	29	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:56108985	C	NA	41	0	41	63.610	8.986	0	0	0	41	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:56108985	C	NA	32	0	31	63.613	8.774	0	0	0	31	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:56108985	C	NA	48	0	48	62.208	9.090	0	0	0	48	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:56108985	C	NA	21	0	21	62.619	8.417	0	0	0	21	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:56108985	C	T	32	0.188	25	62.080	10.739	6	61.333	5.125	25	6	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:56108985	C	NA	44	0	42	66.262	5.017	0	0	0	42	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:56108985	C	NA	35	0	35	61.971	9.212	0	0	0	35	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:56108985	C	NA	34	0	34	61.882	10.809	0	0	0	34	0	FIZ1	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:56390208	T	NA	39	0	39	67.256	7.085	0	0	0	39	0	NLRP4	exonic	synonymous_SNV
RCC_T3--2	chr19:56390208	T	NA	37	0	37	68.108	3.323	0	0	0	37	0	NLRP4	exonic	synonymous_SNV
RCC_T3--3	chr19:56390208	T	C	44	0.136	38	66.395	5.202	6	61.333	6.218	38	6	NLRP4	exonic	synonymous_SNV
RCC_T3--4	chr19:56390208	T	NA	51	0	51	66.314	4.198	0	0	0	51	0	NLRP4	exonic	synonymous_SNV
RCC_T3--5	chr19:56390208	T	NA	34	0	34	66.941	4.492	0	0	0	34	0	NLRP4	exonic	synonymous_SNV
RCC_T3--6	chr19:56390208	T	NA	28	0	28	64.500	8.190	0	0	0	28	0	NLRP4	exonic	synonymous_SNV
RCC_T3--7	chr19:56390208	T	NA	45	0	45	67.200	6.525	0	0	0	45	0	NLRP4	exonic	synonymous_SNV
RCC_T3--8	chr19:56390208	T	NA	47	0	47	66.681	5.074	0	0	0	47	0	NLRP4	exonic	synonymous_SNV
RCC_T3--GL	chr19:56390208	T	NA	50	0	50	66.680	4.631	0	0	0	50	0	NLRP4	exonic	synonymous_SNV
RCC_T3--1	chr19:58727716	G	NA	28	0	27	70.111	2.979	0	0	0	27	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--2	chr19:58727716	G	NA	52	0	52	69.365	3.470	0	0	0	52	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--3	chr19:58727716	G	NA	40	0	40	65.225	8.931	0	0	0	40	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--4	chr19:58727716	G	NA	31	0	31	69.742	2.909	0	0	0	31	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--5	chr19:58727716	G	NA	30	0	30	65.867	7.592	0	0	0	30	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--6	chr19:58727716	G	NA	20	0	20	67.850	4.760	0	0	0	20	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--7	chr19:58727716	G	NA	37	0	37	66.541	7.596	0	0	0	37	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--8	chr19:58727716	G	T	37	0.108	33	70.182	2.686	4	64.250	7.089	33	4	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--GL	chr19:58727716	G	NA	41	0	41	68.610	5.440	0	0	0	41	0	ZNF274(dist=2788),ZNF544(dist=12354)	intergenic	NA
RCC_T3--1	chr19:5931462	C	NA	26	0	26	66.538	3.669	0	0	0	26	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:5931462	C	NA	14	0	14	65.357	5.472	0	0	0	14	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:5931462	C	NA	33	0	33	66.576	3.623	0	0	0	33	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:5931462	C	NA	34	0	34	67.647	3.899	0	0	0	34	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:5931462	C	NA	27	0	27	66.037	4.337	0	0	0	27	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:5931462	C	NA	32	0	32	63.938	10.373	0	0	0	32	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:5931462	C	NA	29	0	29	66.621	6.946	0	0	0	29	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:5931462	C	A	29	0.138	25	64.600	7.561	4	65.500	0.577	25	4	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:5931462	C	NA	41	0	41	64.780	7.316	0	0	0	41	0	RANBP3	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:6443675	G	NA	18	0	18	63.556	10.956	0	0	0	18	0	SLC25A23	intronic	NA
RCC_T3--2	chr19:6443675	G	NA	11	0	11	67.364	1.629	0	0	0	11	0	SLC25A23	intronic	NA
RCC_T3--3	chr19:6443675	G	NA	31	0	31	66.452	4.965	0	0	0	31	0	SLC25A23	intronic	NA
RCC_T3--4	chr19:6443675	G	NA	17	0	17	65.647	7.228	0	0	0	17	0	SLC25A23	intronic	NA
RCC_T3--5	chr19:6443675	G	A	30	0.167	25	64.360	7.205	5	64.200	1.304	25	5	SLC25A23	intronic	NA
RCC_T3--6	chr19:6443675	G	A	27	0.074	25	64.200	4.699	2	66.000	0.000	25	2	SLC25A23	intronic	NA
RCC_T3--7	chr19:6443675	G	A	22	0.045	21	64.095	9.990	1	65.000	0.000	21	1	SLC25A23	intronic	NA
RCC_T3--8	chr19:6443675	G	NA	25	0	25	65.840	5.265	0	0	0	25	0	SLC25A23	intronic	NA
RCC_T3--GL	chr19:6443675	G	NA	35	0	35	65.743	5.170	0	0	0	35	0	SLC25A23	intronic	NA
RCC_T3--1	chr19:6731067	T	NA	24	0	24	66.167	7.693	0	0	0	24	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:6731067	T	NA	37	0	37	66.162	5.231	0	0	0	37	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:6731067	T	NA	46	0	46	64.435	7.299	0	0	0	46	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:6731067	T	NA	42	0	42	65.476	8.004	0	0	0	42	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:6731067	T	NA	22	0	22	65.318	8.654	0	0	0	22	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:6731067	T	NA	29	0	29	61.793	11.024	0	0	0	29	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:6731067	T	NA	49	0	49	64.122	8.418	0	0	0	49	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:6731067	T	C	33	0.121	29	66.724	5.781	4	57.000	7.874	29	4	GPR108	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:6731067	T	NA	50	0	50	62.900	11.240	0	0	0	50	0	GPR108	exonic	nonsynonymous_SNV
RCC_T3--1	chr19:7606987	G	NA	19	0	19	65.474	4.402	0	0	0	19	0	PNPLA6	intronic	NA
RCC_T3--2	chr19:7606987	G	NA	19	0	19	67.947	2.990	0	0	0	19	0	PNPLA6	intronic	NA
RCC_T3--3	chr19:7606987	G	NA	18	0	18	60.944	10.372	0	0	0	18	0	PNPLA6	intronic	NA
RCC_T3--4	chr19:7606987	G	NA	22	0	22	66.136	4.960	0	0	0	22	0	PNPLA6	intronic	NA
RCC_T3--5	chr19:7606987	G	NA	11	0	11	67.455	3.643	0	0	0	11	0	PNPLA6	intronic	NA
RCC_T3--6	chr19:7606987	G	T	20	0.200	16	65.938	9.313	4	61.250	7.632	16	4	PNPLA6	intronic	NA
RCC_T3--7	chr19:7606987	G	NA	24	0	24	65.667	7.522	0	0	0	24	0	PNPLA6	intronic	NA
RCC_T3--8	chr19:7606987	G	NA	22	0	22	66.864	6.742	0	0	0	22	0	PNPLA6	intronic	NA
RCC_T3--GL	chr19:7606987	G	NA	39	0	39	65.949	6.017	0	0	0	39	0	PNPLA6	intronic	NA
RCC_T3--1	chr19:7762247	A	NA	33	0	33	60.212	8.069	0	0	0	33	0	FCER2	intronic	NA
RCC_T3--2	chr19:7762247	A	NA	27	0	27	61.630	7.752	0	0	0	27	0	FCER2	intronic	NA
RCC_T3--3	chr19:7762247	A	C	23	0.043	22	55.727	8.951	1	39.000	0.000	22	1	FCER2	intronic	NA
RCC_T3--4	chr19:7762247	A	NA	30	0	30	58.367	8.344	0	0	0	30	0	FCER2	intronic	NA
RCC_T3--5	chr19:7762247	A	C	27	0.148	23	56.304	9.133	4	40.750	2.062	23	4	FCER2	intronic	NA
RCC_T3--6	chr19:7762247	A	NA	22	0	22	55.364	8.926	0	0	0	22	0	FCER2	intronic	NA
RCC_T3--7	chr19:7762247	A	NA	27	0	27	58.667	9.829	0	0	0	27	0	FCER2	intronic	NA
RCC_T3--8	chr19:7762247	A	NA	37	0	37	56.297	9.738	0	0	0	37	0	FCER2	intronic	NA
RCC_T3--GL	chr19:7762247	A	NA	41	0	41	56.341	11.179	0	0	0	41	0	FCER2	intronic	NA
RCC_T3--1	chr19:7808917	G	T	30	0.133	26	67.615	7.167	4	68.500	2.380	26	4	CD209	intronic	NA
RCC_T3--2	chr19:7808917	G	NA	30	0	30	66.867	5.865	0	0	0	30	0	CD209	intronic	NA
RCC_T3--3	chr19:7808917	G	NA	28	0	28	64.607	6.082	0	0	0	28	0	CD209	intronic	NA
RCC_T3--4	chr19:7808917	G	NA	29	0	29	67.379	5.414	0	0	0	29	0	CD209	intronic	NA
RCC_T3--5	chr19:7808917	G	NA	24	0	24	66.750	5.885	0	0	0	24	0	CD209	intronic	NA
RCC_T3--6	chr19:7808917	G	NA	25	0	25	66.280	4.668	0	0	0	25	0	CD209	intronic	NA
RCC_T3--7	chr19:7808917	G	NA	35	0	35	66.171	7.831	0	0	0	35	0	CD209	intronic	NA
RCC_T3--8	chr19:7808917	G	NA	43	0	43	67.860	4.229	0	0	0	43	0	CD209	intronic	NA
RCC_T3--GL	chr19:7808917	G	NA	50	0	50	66.520	6.680	0	0	0	50	0	CD209	intronic	NA
RCC_T3--1	chr19:7964629	C	NA	46	0	46	66.130	4.151	0	0	0	46	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--2	chr19:7964629	C	NA	56	0	56	65.857	6.056	0	0	0	56	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--3	chr19:7964629	C	NA	63	0	63	64.984	8.001	0	0	0	63	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--4	chr19:7964629	C	NA	77	0	77	65.922	4.986	0	0	0	77	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--5	chr19:7964629	C	NA	37	0	37	65.432	5.268	0	0	0	37	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--6	chr19:7964629	C	NA	49	0	49	65.327	4.736	0	0	0	49	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--7	chr19:7964629	C	A	52	0.115	46	64.739	9.334	6	65.833	0.408	46	6	LRRC8E	exonic	synonymous_SNV
RCC_T3--8	chr19:7964629	C	NA	56	0	56	64.250	8.380	0	0	0	56	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--GL	chr19:7964629	C	NA	51	0	51	64.471	7.145	0	0	0	51	0	LRRC8E	exonic	synonymous_SNV
RCC_T3--1	chr19:8196353	C	NA	26	0	26	65.654	4.749	0	0	0	26	0	FBN3	intronic	NA
RCC_T3--2	chr19:8196353	C	NA	30	0	30	63.900	8.572	0	0	0	30	0	FBN3	intronic	NA
RCC_T3--3	chr19:8196353	C	NA	29	0	29	67.241	3.067	0	0	0	29	0	FBN3	intronic	NA
RCC_T3--4	chr19:8196353	C	NA	30	0	30	65.200	7.631	0	0	0	30	0	FBN3	intronic	NA
RCC_T3--5	chr19:8196353	C	NA	25	0	25	64.640	8.251	0	0	0	25	0	FBN3	intronic	NA
RCC_T3--6	chr19:8196353	C	NA	36	0	36	62.306	8.912	0	0	0	36	0	FBN3	intronic	NA
RCC_T3--7	chr19:8196353	C	T	32	0.125	28	64.679	7.479	4	64.250	2.872	28	4	FBN3	intronic	NA
RCC_T3--8	chr19:8196353	C	NA	36	0	36	65.000	8.780	0	0	0	36	0	FBN3	intronic	NA
RCC_T3--GL	chr19:8196353	C	NA	51	0	51	64.000	7.505	0	0	0	51	0	FBN3	intronic	NA
RCC_T3--1	chr19:8654243	C	NA	19	0	19	63.579	9.495	0	0	0	19	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--2	chr19:8654243	C	NA	32	0	32	63.594	11.319	0	0	0	32	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--3	chr19:8654243	C	A	33	0.121	28	65.714	7.600	4	64.250	2.217	28	4	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--4	chr19:8654243	C	NA	44	0	44	66.364	3.583	0	0	0	44	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--5	chr19:8654243	C	NA	32	0	32	62.969	8.529	0	0	0	32	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--6	chr19:8654243	C	NA	20	0	20	64.000	4.735	0	0	0	20	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--7	chr19:8654243	C	NA	32	0	32	64.594	6.132	0	0	0	32	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--8	chr19:8654243	C	NA	43	0	43	63.326	7.990	0	0	0	43	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--GL	chr19:8654243	C	NA	39	0	39	64.462	6.227	0	0	0	39	0	ADAMTS10	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:1220000	C	A	221	0.258	164	69.152	4.242	57	68.386	4.435	164	57	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:1220000	C	A	249	0.157	209	69.713	2.563	39	67.590	6.427	209	39	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:1220000	C	A	317	0.221	247	68.810	4.521	70	67.343	5.426	247	70	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:1220000	C	A	269	0.238	205	68.517	4.969	64	67.500	4.239	205	64	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:1220000	C	A	244	0.025	238	68.088	5.279	6	69.167	4.309	238	6	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:1220000	C	A	283	0.085	258	67.891	5.048	24	66.417	7.229	258	24	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:1220000	C	A	297	0.162	247	68.437	3.823	48	67.500	5.911	247	48	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:1220000	C	A	193	0.130	168	69.202	3.752	25	69.000	2.533	168	25	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:1220000	C	NA	274	0	274	67.832	5.244	0	0	0	274	0	RAD21L1	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:2774985	G	NA	32	0	32	64.594	9.958	0	0	0	32	0	CPXM1	exonic	synonymous_SNV
RCC_T3--2	chr20:2774985	G	NA	56	0	56	66.268	7.164	0	0	0	56	0	CPXM1	exonic	synonymous_SNV
RCC_T3--3	chr20:2774985	G	NA	46	0	46	63.196	10.664	0	0	0	46	0	CPXM1	exonic	synonymous_SNV
RCC_T3--4	chr20:2774985	G	NA	51	0	51	67.314	3.289	0	0	0	51	0	CPXM1	exonic	synonymous_SNV
RCC_T3--5	chr20:2774985	G	NA	47	0	47	64.277	10.060	0	0	0	47	0	CPXM1	exonic	synonymous_SNV
RCC_T3--6	chr20:2774985	G	T	56	0.107	50	65.040	7.556	6	64.833	6.463	50	6	CPXM1	exonic	synonymous_SNV
RCC_T3--7	chr20:2774985	G	NA	64	0	64	65.094	7.609	0	0	0	64	0	CPXM1	exonic	synonymous_SNV
RCC_T3--8	chr20:2774985	G	NA	36	0	36	66.528	7.049	0	0	0	36	0	CPXM1	exonic	synonymous_SNV
RCC_T3--GL	chr20:2774985	G	NA	65	0	65	66.031	6.418	0	0	0	65	0	CPXM1	exonic	synonymous_SNV
RCC_T3--1	chr20:30386123	C	NA	53	0	53	67.264	3.659	0	0	0	53	0	TPX2	intronic	NA
RCC_T3--2	chr20:30386123	C	T	69	0.101	62	66.403	7.543	7	68.000	2.380	62	7	TPX2	intronic	NA
RCC_T3--3	chr20:30386123	C	NA	90	0	90	66.744	6.075	0	0	0	90	0	TPX2	intronic	NA
RCC_T3--4	chr20:30386123	C	T	74	0.014	73	66.630	5.443	1	62.000	0.000	73	1	TPX2	intronic	NA
RCC_T3--5	chr20:30386123	C	NA	66	0	66	66.636	6.302	0	0	0	66	0	TPX2	intronic	NA
RCC_T3--6	chr20:30386123	C	NA	69	0	69	67.058	5.412	0	0	0	69	0	TPX2	intronic	NA
RCC_T3--7	chr20:30386123	C	NA	68	0	68	68.338	3.240	0	0	0	68	0	TPX2	intronic	NA
RCC_T3--8	chr20:30386123	C	NA	61	0	61	67.902	3.867	0	0	0	61	0	TPX2	intronic	NA
RCC_T3--GL	chr20:30386123	C	NA	75	0	75	65.200	6.596	0	0	0	75	0	TPX2	intronic	NA
RCC_T3--1	chr20:30386345	G	A	21	0.190	16	66.750	3.890	4	66.750	3.594	16	4	TPX2	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:30386345	G	NA	40	0	40	68.650	3.577	0	0	0	40	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:30386345	G	NA	34	0	34	68.147	3.586	0	0	0	34	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:30386345	G	NA	29	0	29	69.207	3.189	0	0	0	29	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:30386345	G	NA	16	0	16	68.500	4.082	0	0	0	16	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:30386345	G	NA	26	0	26	65.346	12.277	0	0	0	26	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:30386345	G	NA	25	0	25	67.440	5.213	0	0	0	25	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:30386345	G	NA	21	0	21	66.476	8.140	0	0	0	21	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:30386345	G	NA	39	0	39	67.077	6.478	0	0	0	39	0	TPX2	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:3171222	C	NA	24	0	24	65.417	8.871	0	0	0	24	0	DDRGK1	UTR3	NA
RCC_T3--2	chr20:3171222	C	NA	26	0	26	69.115	2.321	0	0	0	26	0	DDRGK1	UTR3	NA
RCC_T3--3	chr20:3171222	C	NA	45	0	45	68.422	3.951	0	0	0	45	0	DDRGK1	UTR3	NA
RCC_T3--4	chr20:3171222	C	NA	34	0	34	65.647	8.886	0	0	0	34	0	DDRGK1	UTR3	NA
RCC_T3--5	chr20:3171222	C	NA	31	0	31	67.871	3.990	0	0	0	31	0	DDRGK1	UTR3	NA
RCC_T3--6	chr20:3171222	C	NA	33	0	33	67.515	4.244	0	0	0	33	0	DDRGK1	UTR3	NA
RCC_T3--7	chr20:3171222	C	A	34	0.176	28	69.357	2.844	6	67.167	2.639	28	6	DDRGK1	UTR3	NA
RCC_T3--8	chr20:3171222	C	NA	34	0	34	69.559	2.830	0	0	0	34	0	DDRGK1	UTR3	NA
RCC_T3--GL	chr20:3171222	C	NA	33	0	33	67.121	7.253	0	0	0	33	0	DDRGK1	UTR3	NA
RCC_T3--1	chr20:3171350	G	NA	28	0	28	66.000	3.944	0	0	0	28	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--2	chr20:3171350	G	NA	37	0	37	65.297	6.616	0	0	0	37	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--3	chr20:3171350	G	NA	43	0	43	65.860	8.222	0	0	0	43	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--4	chr20:3171350	G	A	44	0.136	38	65.184	7.752	6	61.500	10.803	38	6	DDRGK1	exonic	synonymous_SNV
RCC_T3--5	chr20:3171350	G	NA	24	0	24	64.708	4.939	0	0	0	24	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--6	chr20:3171350	G	NA	33	0	33	64.182	7.748	0	0	0	33	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--7	chr20:3171350	G	NA	29	0	29	64.103	5.059	0	0	0	29	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--8	chr20:3171350	G	A	32	0.062	30	64.433	4.710	2	62.500	3.536	30	2	DDRGK1	exonic	synonymous_SNV
RCC_T3--GL	chr20:3171350	G	NA	40	0	40	66.850	4.470	0	0	0	40	0	DDRGK1	exonic	synonymous_SNV
RCC_T3--1	chr20:33568752	G	NA	23	0	23	67.217	5.477	0	0	0	23	0	MYH7B	intronic	NA
RCC_T3--2	chr20:33568752	G	NA	49	0	49	66.857	5.657	0	0	0	49	0	MYH7B	intronic	NA
RCC_T3--3	chr20:33568752	G	NA	39	0	39	67.179	4.833	0	0	0	39	0	MYH7B	intronic	NA
RCC_T3--4	chr20:33568752	G	NA	40	0	40	65.250	6.935	0	0	0	40	0	MYH7B	intronic	NA
RCC_T3--5	chr20:33568752	G	NA	38	0	38	67.553	3.839	0	0	0	38	0	MYH7B	intronic	NA
RCC_T3--6	chr20:33568752	G	A	35	0.171	29	65.759	6.545	6	57.667	13.604	29	6	MYH7B	intronic	NA
RCC_T3--7	chr20:33568752	G	NA	42	0	42	66.048	6.666	0	0	0	42	0	MYH7B	intronic	NA
RCC_T3--8	chr20:33568752	G	NA	42	0	42	64.524	9.235	0	0	0	42	0	MYH7B	intronic	NA
RCC_T3--GL	chr20:33568752	G	NA	38	0	38	66.132	5.041	0	0	0	38	0	MYH7B	intronic	NA
RCC_T3--1	chr20:33971915	G	T	57	0.193	46	68.804	3.619	11	69.364	4.154	46	11	UQCC1	exonic	synonymous_SNV
RCC_T3--2	chr20:33971915	G	T	62	0.097	55	67.927	5.022	6	66.833	3.710	55	6	UQCC1	exonic	synonymous_SNV
RCC_T3--3	chr20:33971915	G	T	92	0.293	65	67.831	4.958	27	68.704	3.698	65	27	UQCC1	exonic	synonymous_SNV
RCC_T3--4	chr20:33971915	G	T	80	0.100	72	68.917	5.040	8	67.500	3.742	72	8	UQCC1	exonic	synonymous_SNV
RCC_T3--5	chr20:33971915	G	NA	55	0	54	68.481	5.732	0	0	0	54	0	UQCC1	exonic	synonymous_SNV
RCC_T3--6	chr20:33971915	G	T	54	0.037	52	69.462	3.214	2	72.000	0.000	52	2	UQCC1	exonic	synonymous_SNV
RCC_T3--7	chr20:33971915	G	T	53	0.094	48	68.312	4.303	5	69.800	2.280	48	5	UQCC1	exonic	synonymous_SNV
RCC_T3--8	chr20:33971915	G	T	53	0.302	37	68.324	3.937	16	68.812	2.588	37	16	UQCC1	exonic	synonymous_SNV
RCC_T3--GL	chr20:33971915	G	NA	69	0	69	68.116	4.907	0	0	0	69	0	UQCC1	exonic	synonymous_SNV
RCC_T3--1	chr20:34778451	G	NA	21	0	21	66.714	5.806	0	0	0	21	0	EPB41L1	intronic	NA
RCC_T3--2	chr20:34778451	G	NA	31	0	31	64.774	8.241	0	0	0	31	0	EPB41L1	intronic	NA
RCC_T3--3	chr20:34778451	G	NA	17	0	17	64.471	7.706	0	0	0	17	0	EPB41L1	intronic	NA
RCC_T3--4	chr20:34778451	G	NA	16	0	15	63.600	10.649	0	0	0	15	0	EPB41L1	intronic	NA
RCC_T3--5	chr20:34778451	G	NA	14	0	14	66.286	4.811	0	0	0	14	0	EPB41L1	intronic	NA
RCC_T3--6	chr20:34778451	G	T	23	0.174	19	65.316	6.219	4	67.500	1.915	19	4	EPB41L1	intronic	NA
RCC_T3--7	chr20:34778451	G	NA	21	0	21	66.238	4.449	0	0	0	21	0	EPB41L1	intronic	NA
RCC_T3--8	chr20:34778451	G	NA	33	0	33	65.485	8.322	0	0	0	33	0	EPB41L1	intronic	NA
RCC_T3--GL	chr20:34778451	G	NA	35	0	35	66.229	5.036	0	0	0	35	0	EPB41L1	intronic	NA
RCC_T3--1	chr20:35128004	A	NA	30	0	30	66.000	7.808	0	0	0	30	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:35128004	A	NA	45	0	45	67.156	5.943	0	0	0	45	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:35128004	A	NA	24	0	24	66.833	4.361	0	0	0	24	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:35128004	A	NA	35	0	35	66.714	4.725	0	0	0	35	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:35128004	A	NA	22	0	22	66.636	5.386	0	0	0	22	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:35128004	A	G	30	0.133	26	64.077	9.583	4	68.500	4.123	26	4	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:35128004	A	NA	32	0	32	66.562	4.087	0	0	0	32	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:35128004	A	NA	43	0	43	67.302	3.391	0	0	0	43	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:35128004	A	NA	38	0	38	66.342	7.091	0	0	0	38	0	DLGAP4	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:35423154	A	C	19	0.053	18	63.167	8.354	1	38.000	0.000	18	1	SOGA1	intronic	NA
RCC_T3--2	chr20:35423154	A	C	14	0.071	13	60.615	12.413	1	33.000	0.000	13	1	SOGA1	intronic	NA
RCC_T3--3	chr20:35423154	A	NA	19	0	19	60.842	10.447	0	0	0	19	0	SOGA1	intronic	NA
RCC_T3--4	chr20:35423154	A	NA	37	0	37	61.919	8.600	0	0	0	37	0	SOGA1	intronic	NA
RCC_T3--5	chr20:35423154	A	NA	15	0	15	58.400	13.850	0	0	0	15	0	SOGA1	intronic	NA
RCC_T3--6	chr20:35423154	A	C	19	0.211	15	61.400	11.568	4	37.000	2.708	15	4	SOGA1	intronic	NA
RCC_T3--7	chr20:35423154	A	NA	18	0	17	60.706	11.878	0	0	0	17	0	SOGA1	intronic	NA
RCC_T3--8	chr20:35423154	A	NA	24	0	24	58.667	11.103	0	0	0	24	0	SOGA1	intronic	NA
RCC_T3--GL	chr20:35423154	A	NA	36	0	36	61.306	9.531	0	0	0	36	0	SOGA1	intronic	NA
RCC_T3--1	chr20:36407778	G	T	100	0.140	86	67.895	4.949	14	69.643	2.706	86	14	CTNNBL1	intronic	NA
RCC_T3--2	chr20:36407778	G	T	122	0.156	103	66.796	6.096	19	68.053	4.708	103	19	CTNNBL1	intronic	NA
RCC_T3--3	chr20:36407778	G	T	113	0.257	84	68.357	3.721	29	69.724	2.034	84	29	CTNNBL1	intronic	NA
RCC_T3--4	chr20:36407778	G	T	124	0.242	92	66.522	6.133	30	68.533	3.060	92	30	CTNNBL1	intronic	NA
RCC_T3--5	chr20:36407778	G	T	101	0.030	98	66.143	5.598	3	70.333	1.155	98	3	CTNNBL1	intronic	NA
RCC_T3--6	chr20:36407778	G	T	129	0.101	116	66.681	4.607	13	67.231	3.678	116	13	CTNNBL1	intronic	NA
RCC_T3--7	chr20:36407778	G	T	93	0.172	77	68.091	3.829	16	66.875	7.464	77	16	CTNNBL1	intronic	NA
RCC_T3--8	chr20:36407778	G	T	89	0.157	75	67.827	4.137	14	69.357	1.985	75	14	CTNNBL1	intronic	NA
RCC_T3--GL	chr20:36407778	G	NA	111	0	111	65.901	5.803	0	0	0	111	0	CTNNBL1	intronic	NA
RCC_T3--1	chr20:36407780	C	A	96	0.146	82	69.305	3.760	14	67.929	5.903	82	14	CTNNBL1	intronic	NA
RCC_T3--2	chr20:36407780	C	A	122	0.139	105	67.333	6.139	17	68.765	3.945	105	17	CTNNBL1	intronic	NA
RCC_T3--3	chr20:36407780	C	A	113	0.257	84	69.298	3.343	29	68.345	4.073	84	29	CTNNBL1	intronic	NA
RCC_T3--4	chr20:36407780	C	A	124	0.234	95	67.432	4.863	29	68.759	2.370	95	29	CTNNBL1	intronic	NA
RCC_T3--5	chr20:36407780	C	A	105	0.038	101	67.861	4.409	4	67.000	3.162	101	4	CTNNBL1	intronic	NA
RCC_T3--6	chr20:36407780	C	A	126	0.103	113	68.310	3.799	13	67.538	3.799	113	13	CTNNBL1	intronic	NA
RCC_T3--7	chr20:36407780	C	A	90	0.178	74	69.216	4.253	16	67.500	3.950	74	16	CTNNBL1	intronic	NA
RCC_T3--8	chr20:36407780	C	A	89	0.169	74	68.622	3.856	15	66.933	4.773	74	15	CTNNBL1	intronic	NA
RCC_T3--GL	chr20:36407780	C	NA	111	0	111	66.757	6.618	0	0	0	111	0	CTNNBL1	intronic	NA
RCC_T3--1	chr20:36470821	C	NA	85	0	84	67.488	3.179	0	0	0	84	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:36470821	C	NA	82	0	82	65.854	8.031	0	0	0	82	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:36470821	C	NA	75	0	75	66.640	5.644	0	0	0	75	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:36470821	C	A	57	0.105	51	65.902	8.290	6	67.333	3.670	51	6	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:36470821	C	NA	74	0	74	64.486	8.771	0	0	0	74	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:36470821	C	NA	79	0	79	64.544	6.994	0	0	0	79	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:36470821	C	NA	79	0	79	66.139	6.675	0	0	0	79	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:36470821	C	A	66	0.015	65	65.862	6.351	1	64.000	0.000	65	1	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:36470821	C	NA	75	0	75	64.987	7.178	0	0	0	75	0	CTNNBL1	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:37198524	C	A	70	0.229	54	67.593	4.100	16	68.000	2.757	54	16	RALGAPB	intronic	NA
RCC_T3--2	chr20:37198524	C	A	93	0.183	76	68.289	3.417	17	67.059	4.145	76	17	RALGAPB	intronic	NA
RCC_T3--3	chr20:37198524	C	A	92	0.293	65	68.308	3.225	27	67.222	5.086	65	27	RALGAPB	intronic	NA
RCC_T3--4	chr20:37198524	C	A	72	0.319	49	66.449	5.962	23	68.087	3.999	49	23	RALGAPB	intronic	NA
RCC_T3--5	chr20:37198524	C	A	50	0.020	49	68.592	3.889	1	71.000	0.000	49	1	RALGAPB	intronic	NA
RCC_T3--6	chr20:37198524	C	A	81	0.148	69	67.159	6.557	12	67.250	7.225	69	12	RALGAPB	intronic	NA
RCC_T3--7	chr20:37198524	C	A	98	0.224	76	67.816	5.549	22	66.136	3.427	76	22	RALGAPB	intronic	NA
RCC_T3--8	chr20:37198524	C	A	94	0.287	67	66.851	6.453	27	64.333	5.069	67	27	RALGAPB	intronic	NA
RCC_T3--GL	chr20:37198524	C	NA	81	0	81	66.914	6.652	0	0	0	81	0	RALGAPB	intronic	NA
RCC_T3--1	chr20:43129998	G	A	26	0.269	19	68.947	2.857	7	63.286	4.192	19	7	SERINC3	intronic	NA
RCC_T3--2	chr20:43129998	G	A	40	0.125	35	69.286	2.803	5	65.600	2.510	35	5	SERINC3	intronic	NA
RCC_T3--3	chr20:43129998	G	A	41	0.341	27	64.704	8.787	14	62.429	8.401	27	14	SERINC3	intronic	NA
RCC_T3--4	chr20:43129998	G	A	32	0.250	23	68.043	3.735	8	62.750	3.732	23	8	SERINC3	intronic	NA
RCC_T3--5	chr20:43129998	G	NA	16	0	15	67.867	3.067	0	0	0	15	0	SERINC3	intronic	NA
RCC_T3--6	chr20:43129998	G	A	26	0.038	25	66.440	5.017	1	33.000	0.000	25	1	SERINC3	intronic	NA
RCC_T3--7	chr20:43129998	G	A	39	0.231	30	67.267	4.008	9	65.556	5.199	30	9	SERINC3	intronic	NA
RCC_T3--8	chr20:43129998	G	A	46	0.196	37	67.054	5.307	9	62.556	7.468	37	9	SERINC3	intronic	NA
RCC_T3--GL	chr20:43129998	G	NA	46	0	46	64.848	9.189	0	0	0	46	0	SERINC3	intronic	NA
RCC_T3--1	chr20:43739299	C	NA	21	0	21	65.667	4.408	0	0	0	21	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:43739299	C	NA	22	0	22	62.818	12.254	0	0	0	22	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:43739299	C	NA	36	0	36	64.250	7.217	0	0	0	36	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:43739299	C	NA	16	0	15	65.333	9.883	0	0	0	15	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:43739299	C	A	28	0.036	27	67.111	4.362	1	39.000	0.000	27	1	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:43739299	C	A	28	0.143	24	67.125	4.256	4	66.500	4.796	24	4	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:43739299	C	NA	28	0	28	64.786	10.861	0	0	0	28	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:43739299	C	NA	27	0	27	63.593	6.014	0	0	0	27	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:43739299	C	NA	36	0	36	63.111	9.168	0	0	0	36	0	WFDC5	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:43933414	G	NA	33	0	33	65.333	8.971	0	0	0	33	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:43933414	G	NA	25	0	25	65.680	7.873	0	0	0	25	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:43933414	G	NA	40	0	40	65.400	5.476	0	0	0	40	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:43933414	G	NA	24	0	24	67.292	4.930	0	0	0	24	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:43933414	G	T	35	0.171	29	65.724	3.807	6	63.667	5.241	29	6	MATN4	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:43933414	G	NA	26	0	26	67.269	4.276	0	0	0	26	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:43933414	G	NA	25	0	25	66.920	3.499	0	0	0	25	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:43933414	G	NA	25	0	25	66.680	3.923	0	0	0	25	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:43933414	G	NA	36	0	36	64.639	5.319	0	0	0	36	0	MATN4	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:44596644	C	NA	39	0	39	65.718	4.888	0	0	0	39	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:44596644	C	A	44	0.182	36	68.472	4.046	8	56.000	14.223	36	8	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:44596644	C	NA	43	0	43	64.953	6.593	0	0	0	43	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:44596644	C	NA	38	0	38	66.816	4.753	0	0	0	38	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:44596644	C	NA	28	0	28	64.786	9.110	0	0	0	28	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:44596644	C	NA	32	0	31	65.516	6.976	0	0	0	31	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:44596644	C	NA	24	0	24	66.917	5.934	0	0	0	24	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:44596644	C	NA	24	0	24	66.292	5.393	0	0	0	24	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:44596644	C	NA	50	0	50	64.040	6.292	0	0	0	50	0	ZNF335	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:45839305	A	C	50	0.260	35	65.686	5.449	13	67.154	5.928	35	13	ZMYND8	UTR3	NA
RCC_T3--2	chr20:45839305	A	C	88	0.193	71	66.986	4.565	17	66.412	5.580	71	17	ZMYND8	UTR3	NA
RCC_T3--3	chr20:45839305	A	C	95	0.242	72	66.486	5.516	23	65.348	8.009	72	23	ZMYND8	UTR3	NA
RCC_T3--4	chr20:45839305	A	C	98	0.112	87	66.115	3.802	11	68.000	2.683	87	11	ZMYND8	UTR3	NA
RCC_T3--5	chr20:45839305	A	C	85	0.035	82	64.829	5.950	3	67.667	3.786	82	3	ZMYND8	UTR3	NA
RCC_T3--6	chr20:45839305	A	C	59	0.034	57	65.649	6.343	2	52.000	19.799	57	2	ZMYND8	UTR3	NA
RCC_T3--7	chr20:45839305	A	C	83	0.265	61	67.475	4.925	22	65.136	8.363	61	22	ZMYND8	UTR3	NA
RCC_T3--8	chr20:45839305	A	C	98	0.194	79	65.595	6.992	19	63.789	7.345	79	19	ZMYND8	UTR3	NA
RCC_T3--GL	chr20:45839305	A	NA	83	0	83	63.566	8.090	0	0	0	83	0	ZMYND8	UTR3	NA
RCC_T3--1	chr20:50715012	G	NA	56	0	56	66.286	7.778	0	0	0	56	0	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:50715012	G	A	105	0.010	104	66.548	6.387	1	54.000	0.000	104	1	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:50715012	G	A	75	0.187	61	67.721	4.309	14	66.143	10.037	61	14	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:50715012	G	A	90	0.056	85	66.129	7.854	5	70.000	3.391	85	5	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:50715012	G	NA	88	0	88	67.068	5.087	0	0	0	88	0	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:50715012	G	NA	69	0	69	68.159	5.482	0	0	0	69	0	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:50715012	G	NA	84	0	84	65.762	7.366	0	0	0	84	0	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:50715012	G	A	83	0.145	71	67.662	6.765	12	66.667	4.355	71	12	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:50715012	G	NA	112	0	112	64.438	8.821	0	0	0	112	0	ZFP64	exonic	nonsynonymous_SNV
RCC_T3--1	chr20:57042212	T	C	28	0.143	24	62.292	9.448	4	63.500	3.786	24	4	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--2	chr20:57042212	T	NA	37	0	37	60.054	9.571	0	0	0	37	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--3	chr20:57042212	T	NA	36	0	36	64.472	8.426	0	0	0	36	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--4	chr20:57042212	T	C	22	0.045	21	59.476	10.595	1	33.000	0.000	21	1	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--5	chr20:57042212	T	C	32	0.031	31	58.871	11.141	1	33.000	0.000	31	1	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--6	chr20:57042212	T	NA	31	0	31	57.097	11.940	0	0	0	31	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--7	chr20:57042212	T	NA	39	0	39	58.590	10.379	0	0	0	39	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--8	chr20:57042212	T	NA	31	0	31	60.968	8.739	0	0	0	31	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--GL	chr20:57042212	T	NA	41	0	41	58.293	11.005	0	0	0	41	0	APCDD1L	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:100910744	G	NA	73	0	73	66.973	3.793	0	0	0	73	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:100910744	G	NA	55	0	55	67.836	4.307	0	0	0	55	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:100910744	G	NA	74	0	74	67.541	4.139	0	0	0	74	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:100910744	G	NA	68	0	68	67.338	4.883	0	0	0	68	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:100910744	G	C	81	0.099	72	65.556	8.477	8	65.500	5.425	72	8	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:100910744	G	C	79	0.051	75	65.747	6.514	4	66.750	3.500	75	4	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:100910744	G	NA	89	0	88	66.477	5.210	0	0	0	88	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:100910744	G	C	89	0.135	76	65.855	4.707	12	60.417	13.104	76	12	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:100910744	G	NA	71	0	71	66.944	4.720	0	0	0	71	0	LONRF2	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:106985343	C	NA	56	0	56	66.536	7.966	0	0	0	56	0	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--2	chr2:106985343	C	T	57	0.035	55	66.309	7.848	2	69.500	0.707	55	2	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--3	chr2:106985343	C	T	33	0.242	25	66.880	7.823	8	67.875	3.563	25	8	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--4	chr2:106985343	C	T	38	0.079	35	65.857	9.831	3	67.333	2.082	35	3	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--5	chr2:106985343	C	NA	50	0	50	66.360	7.099	0	0	0	50	0	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--6	chr2:106985343	C	NA	46	0	46	67.674	4.789	0	0	0	46	0	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--7	chr2:106985343	C	NA	50	0	50	65.880	9.005	0	0	0	50	0	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--8	chr2:106985343	C	T	74	0.162	62	65.742	6.697	12	66.083	10.689	62	12	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--GL	chr2:106985343	C	NA	58	0	58	66.172	5.198	0	0	0	58	0	UXS1(dist=174548),PLGLA(dist=13227)	intergenic	NA
RCC_T3--1	chr2:127957086	C	NA	33	0	33	67.909	4.798	0	0	0	33	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:127957086	C	A	55	0.109	49	68.347	4.675	6	59.667	8.641	49	6	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:127957086	C	NA	58	0	57	65.088	7.666	0	0	0	57	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:127957086	C	NA	43	0	43	67.837	4.525	0	0	0	43	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:127957086	C	NA	25	0	25	65.960	7.231	0	0	0	25	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:127957086	C	NA	55	0	55	67.418	6.616	0	0	0	55	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:127957086	C	NA	61	0	61	66.820	5.976	0	0	0	61	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:127957086	C	NA	70	0	69	66.725	4.838	0	0	0	69	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:127957086	C	NA	52	0	52	64.904	8.718	0	0	0	52	0	CYP27C1	exonic	nonsynonymous_SNV
RCC_T3--1	chr21:31768969	C	NA	36	0	36	67.556	7.161	0	0	0	36	0	KRTAP13-1	UTR3	NA
RCC_T3--2	chr21:31768969	C	NA	32	0	32	68.719	3.787	0	0	0	32	0	KRTAP13-1	UTR3	NA
RCC_T3--3	chr21:31768969	C	NA	31	0	31	67.871	4.064	0	0	0	31	0	KRTAP13-1	UTR3	NA
RCC_T3--4	chr21:31768969	C	NA	50	0	50	68.640	4.588	0	0	0	50	0	KRTAP13-1	UTR3	NA
RCC_T3--5	chr21:31768969	C	NA	34	0	34	68.824	4.217	0	0	0	34	0	KRTAP13-1	UTR3	NA
RCC_T3--6	chr21:31768969	C	NA	37	0	37	68.135	5.813	0	0	0	37	0	KRTAP13-1	UTR3	NA
RCC_T3--7	chr21:31768969	C	A	35	0.114	31	66.581	7.680	4	68.250	1.500	31	4	KRTAP13-1	UTR3	NA
RCC_T3--8	chr21:31768969	C	NA	29	0	29	69.069	3.863	0	0	0	29	0	KRTAP13-1	UTR3	NA
RCC_T3--GL	chr21:31768969	C	NA	42	0	42	68.476	3.724	0	0	0	42	0	KRTAP13-1	UTR3	NA
RCC_T3--1	chr21:31914206	A	G	98	0.204	78	68.423	3.989	20	66.750	7.268	78	20	KRTAP19-6	upstream	NA
RCC_T3--2	chr21:31914206	A	G	113	0.168	94	68.085	6.273	19	66.263	5.496	94	19	KRTAP19-6	upstream	NA
RCC_T3--3	chr21:31914206	A	G	143	0.308	99	67.394	5.967	44	67.386	4.357	99	44	KRTAP19-6	upstream	NA
RCC_T3--4	chr21:31914206	A	G	106	0.292	75	68.613	3.601	31	67.935	7.118	75	31	KRTAP19-6	upstream	NA
RCC_T3--5	chr21:31914206	A	G	111	0.036	106	67.896	4.751	4	68.750	4.717	106	4	KRTAP19-6	upstream	NA
RCC_T3--6	chr21:31914206	A	G	126	0.095	114	67.781	4.579	12	67.250	5.754	114	12	KRTAP19-6	upstream	NA
RCC_T3--7	chr21:31914206	A	G	145	0.234	111	67.486	5.508	34	68.118	6.790	111	34	KRTAP19-6	upstream	NA
RCC_T3--8	chr21:31914206	A	G	131	0.206	104	67.904	6.316	27	66.222	7.963	104	27	KRTAP19-6	upstream	NA
RCC_T3--GL	chr21:31914206	A	NA	130	0	130	67.523	5.497	0	0	0	130	0	KRTAP19-6	upstream	NA
RCC_T3--1	chr21:31962602	G	A	159	0.296	112	69.027	2.967	47	69.043	3.489	112	47	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--2	chr21:31962602	G	A	135	0.163	113	69.230	3.657	22	68.636	4.655	113	22	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--3	chr21:31962602	G	A	160	0.237	122	69.098	4.806	38	69.053	5.968	122	38	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--4	chr21:31962602	G	A	178	0.348	115	68.513	4.833	62	69.371	3.446	115	62	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--5	chr21:31962602	G	A	145	0.041	139	68.230	5.353	6	68.500	2.345	139	6	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--6	chr21:31962602	G	A	179	0.061	168	68.006	6.253	11	69.273	3.069	168	11	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--7	chr21:31962602	G	A	159	0.226	123	68.301	5.387	36	68.083	4.860	123	36	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--8	chr21:31962602	G	A	203	0.192	164	68.280	5.365	39	68.795	3.799	164	39	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr21:31962602	G	NA	169	0	169	67.473	5.933	0	0	0	169	0	KRTAP22-2	exonic	nonsynonymous_SNV
RCC_T3--1	chr21:32825056	C	NA	29	0	29	67.862	3.324	0	0	0	29	0	TIAM1	intronic	NA
RCC_T3--2	chr21:32825056	C	NA	36	0	36	67.444	8.171	0	0	0	36	0	TIAM1	intronic	NA
RCC_T3--3	chr21:32825056	C	NA	43	0	43	68.884	1.991	0	0	0	43	0	TIAM1	intronic	NA
RCC_T3--4	chr21:32825056	C	A	30	0.133	26	67.615	4.070	4	66.000	3.162	26	4	TIAM1	intronic	NA
RCC_T3--5	chr21:32825056	C	NA	28	0	28	69.357	2.360	0	0	0	28	0	TIAM1	intronic	NA
RCC_T3--6	chr21:32825056	C	NA	29	0	29	68.138	3.543	0	0	0	29	0	TIAM1	intronic	NA
RCC_T3--7	chr21:32825056	C	NA	33	0	33	68.818	3.216	0	0	0	33	0	TIAM1	intronic	NA
RCC_T3--8	chr21:32825056	C	NA	31	0	31	69.129	2.872	0	0	0	31	0	TIAM1	intronic	NA
RCC_T3--GL	chr21:32825056	C	NA	45	0	45	66.556	6.440	0	0	0	45	0	TIAM1	intronic	NA
RCC_T3--1	chr2:132896833	G	T	30	0.133	26	69.308	2.710	4	72.000	0.000	26	4	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--2	chr2:132896833	G	NA	43	0	43	68.093	6.156	0	0	0	43	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--3	chr2:132896833	G	NA	47	0	47	69.213	3.501	0	0	0	47	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--4	chr2:132896833	G	NA	62	0	62	69.242	4.031	0	0	0	62	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--5	chr2:132896833	G	NA	39	0	39	68.897	3.919	0	0	0	39	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--6	chr2:132896833	G	NA	32	0	32	68.625	3.808	0	0	0	32	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--7	chr2:132896833	G	NA	37	0	37	69.270	3.477	0	0	0	37	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--8	chr2:132896833	G	NA	59	0	59	68.915	6.101	0	0	0	59	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--GL	chr2:132896833	G	NA	43	0	43	67.233	7.107	0	0	0	43	0	C2orf27B(dist=337599),ANKRD30BL(dist=8331)	intergenic	NA
RCC_T3--1	chr2:133668685	G	NA	24	0	24	68.333	3.293	0	0	0	24	0	MIR7853	ncRNA_intronic	NA
RCC_T3--2	chr2:133668685	G	A	33	0.121	29	68.759	3.031	4	68.000	2.309	29	4	MIR7853	ncRNA_intronic	NA
RCC_T3--3	chr2:133668685	G	NA	35	0	35	67.286	7.618	0	0	0	35	0	MIR7853	ncRNA_intronic	NA
RCC_T3--4	chr2:133668685	G	NA	25	0	25	70.000	2.598	0	0	0	25	0	MIR7853	ncRNA_intronic	NA
RCC_T3--5	chr2:133668685	G	NA	34	0	34	68.676	3.540	0	0	0	34	0	MIR7853	ncRNA_intronic	NA
RCC_T3--6	chr2:133668685	G	NA	40	0	40	68.700	4.357	0	0	0	40	0	MIR7853	ncRNA_intronic	NA
RCC_T3--7	chr2:133668685	G	NA	40	0	40	66.575	8.515	0	0	0	40	0	MIR7853	ncRNA_intronic	NA
RCC_T3--8	chr2:133668685	G	NA	27	0	27	68.593	4.031	0	0	0	27	0	MIR7853	ncRNA_intronic	NA
RCC_T3--GL	chr2:133668685	G	NA	37	0	37	67.054	6.553	0	0	0	37	0	MIR7853	ncRNA_intronic	NA
RCC_T3--1	chr21:35276019	T	C	80	0.163	67	69.060	4.492	13	68.846	2.641	67	13	ATP5O	intronic	NA
RCC_T3--2	chr21:35276019	T	C	108	0.194	87	69.149	3.153	21	67.619	7.579	87	21	ATP5O	intronic	NA
RCC_T3--3	chr21:35276019	T	C	97	0.381	60	68.583	3.175	37	68.405	3.685	60	37	ATP5O	intronic	NA
RCC_T3--4	chr21:35276019	T	C	92	0.174	76	68.737	4.731	16	68.125	4.209	76	16	ATP5O	intronic	NA
RCC_T3--5	chr21:35276019	T	C	83	0.072	77	69.117	4.350	6	68.833	2.787	77	6	ATP5O	intronic	NA
RCC_T3--6	chr21:35276019	T	C	96	0.156	81	68.901	3.192	15	65.200	8.654	81	15	ATP5O	intronic	NA
RCC_T3--7	chr21:35276019	T	C	107	0.215	84	67.869	5.148	23	68.522	3.703	84	23	ATP5O	intronic	NA
RCC_T3--8	chr21:35276019	T	C	110	0.264	81	68.901	3.254	29	68.966	2.796	81	29	ATP5O	intronic	NA
RCC_T3--GL	chr21:35276019	T	NA	121	0	121	67.992	5.742	0	0	0	121	0	ATP5O	intronic	NA
RCC_T3--1	chr21:37667404	G	NA	31	0	31	67.387	3.809	0	0	0	31	0	DOPEY2	downstream	NA
RCC_T3--2	chr21:37667404	G	NA	58	0	58	67.397	4.927	0	0	0	58	0	DOPEY2	downstream	NA
RCC_T3--3	chr21:37667404	G	NA	40	0	40	66.125	6.422	0	0	0	40	0	DOPEY2	downstream	NA
RCC_T3--4	chr21:37667404	G	NA	45	0	45	67.333	5.377	0	0	0	45	0	DOPEY2	downstream	NA
RCC_T3--5	chr21:37667404	G	NA	25	0	25	64.600	12.268	0	0	0	25	0	DOPEY2	downstream	NA
RCC_T3--6	chr21:37667404	G	NA	36	0	36	66.472	4.475	0	0	0	36	0	DOPEY2	downstream	NA
RCC_T3--7	chr21:37667404	G	NA	33	0	33	66.030	8.809	0	0	0	33	0	DOPEY2	downstream	NA
RCC_T3--8	chr21:37667404	G	T	42	0.143	36	66.194	5.994	6	67.500	6.058	36	6	DOPEY2	downstream	NA
RCC_T3--GL	chr21:37667404	G	NA	59	0	59	66.322	8.007	0	0	0	59	0	DOPEY2	downstream	NA
RCC_T3--1	chr21:38117115	T	NA	24	0	24	67.583	3.900	0	0	0	24	0	SIM2	exonic	synonymous_SNV
RCC_T3--2	chr21:38117115	T	NA	24	0	24	65.083	8.485	0	0	0	24	0	SIM2	exonic	synonymous_SNV
RCC_T3--3	chr21:38117115	T	NA	45	0	45	64.222	7.991	0	0	0	45	0	SIM2	exonic	synonymous_SNV
RCC_T3--4	chr21:38117115	T	NA	33	0	33	63.697	8.633	0	0	0	33	0	SIM2	exonic	synonymous_SNV
RCC_T3--5	chr21:38117115	T	C	27	0.148	23	65.348	3.821	4	56.500	15.843	23	4	SIM2	exonic	synonymous_SNV
RCC_T3--6	chr21:38117115	T	NA	41	0	41	64.000	6.797	0	0	0	41	0	SIM2	exonic	synonymous_SNV
RCC_T3--7	chr21:38117115	T	NA	33	0	33	66.727	5.180	0	0	0	33	0	SIM2	exonic	synonymous_SNV
RCC_T3--8	chr21:38117115	T	NA	45	0	45	66.089	6.338	0	0	0	45	0	SIM2	exonic	synonymous_SNV
RCC_T3--GL	chr21:38117115	T	NA	39	0	39	66.718	3.790	0	0	0	39	0	SIM2	exonic	synonymous_SNV
RCC_T3--1	chr21:40636752	T	NA	43	0	43	69.279	3.119	0	0	0	43	0	BRWD1	intronic	NA
RCC_T3--2	chr21:40636752	T	NA	58	0	58	68.828	3.614	0	0	0	58	0	BRWD1	intronic	NA
RCC_T3--3	chr21:40636752	T	NA	79	0	78	68.115	4.023	0	0	0	78	0	BRWD1	intronic	NA
RCC_T3--4	chr21:40636752	T	NA	58	0	58	69.000	3.228	0	0	0	58	0	BRWD1	intronic	NA
RCC_T3--5	chr21:40636752	T	NA	47	0	46	69.109	3.295	0	0	0	46	0	BRWD1	intronic	NA
RCC_T3--6	chr21:40636752	T	A	57	0.105	51	67.451	4.867	6	69.333	2.658	51	6	BRWD1	intronic	NA
RCC_T3--7	chr21:40636752	T	NA	74	0	74	68.473	4.028	0	0	0	74	0	BRWD1	intronic	NA
RCC_T3--8	chr21:40636752	T	NA	79	0	79	68.278	4.191	0	0	0	79	0	BRWD1	intronic	NA
RCC_T3--GL	chr21:40636752	T	NA	72	0	72	67.903	3.697	0	0	0	72	0	BRWD1	intronic	NA
RCC_T3--1	chr21:43543206	C	NA	40	0	39	62.923	9.138	0	0	0	39	0	UMODL1	exonic	synonymous_SNV
RCC_T3--2	chr21:43543206	C	NA	68	0	68	65.647	6.921	0	0	0	68	0	UMODL1	exonic	synonymous_SNV
RCC_T3--3	chr21:43543206	C	NA	44	0	44	66.136	3.613	0	0	0	44	0	UMODL1	exonic	synonymous_SNV
RCC_T3--4	chr21:43543206	C	NA	44	0	44	66.455	4.196	0	0	0	44	0	UMODL1	exonic	synonymous_SNV
RCC_T3--5	chr21:43543206	C	NA	55	0	55	65.327	6.092	0	0	0	55	0	UMODL1	exonic	synonymous_SNV
RCC_T3--6	chr21:43543206	C	A	47	0.128	41	65.537	5.080	6	65.833	0.983	41	6	UMODL1	exonic	synonymous_SNV
RCC_T3--7	chr21:43543206	C	NA	63	0	63	63.968	5.869	0	0	0	63	0	UMODL1	exonic	synonymous_SNV
RCC_T3--8	chr21:43543206	C	NA	51	0	51	65.765	3.871	0	0	0	51	0	UMODL1	exonic	synonymous_SNV
RCC_T3--GL	chr21:43543206	C	NA	55	0	55	63.000	9.536	0	0	0	55	0	UMODL1	exonic	synonymous_SNV
RCC_T3--1	chr21:44437127	C	NA	43	0	43	68.767	3.565	0	0	0	43	0	PKNOX1	intronic	NA
RCC_T3--2	chr21:44437127	C	NA	38	0	38	69.132	2.979	0	0	0	38	0	PKNOX1	intronic	NA
RCC_T3--3	chr21:44437127	C	NA	34	0	34	67.824	4.642	0	0	0	34	0	PKNOX1	intronic	NA
RCC_T3--4	chr21:44437127	C	A	28	0.143	24	67.458	9.842	4	68.750	3.775	24	4	PKNOX1	intronic	NA
RCC_T3--5	chr21:44437127	C	A	42	0.024	41	66.390	7.127	1	33.000	0.000	41	1	PKNOX1	intronic	NA
RCC_T3--6	chr21:44437127	C	NA	46	0	46	66.130	6.608	0	0	0	46	0	PKNOX1	intronic	NA
RCC_T3--7	chr21:44437127	C	NA	38	0	38	68.026	6.796	0	0	0	38	0	PKNOX1	intronic	NA
RCC_T3--8	chr21:44437127	C	NA	49	0	49	68.429	3.373	0	0	0	49	0	PKNOX1	intronic	NA
RCC_T3--GL	chr21:44437127	C	NA	43	0	43	66.465	4.636	0	0	0	43	0	PKNOX1	intronic	NA
RCC_T3--1	chr21:44838195	C	NA	29	0	29	62.034	8.805	0	0	0	29	0	SIK1	exonic	synonymous_SNV
RCC_T3--2	chr21:44838195	C	NA	39	0	39	63.564	6.762	0	0	0	39	0	SIK1	exonic	synonymous_SNV
RCC_T3--3	chr21:44838195	C	NA	33	0	33	60.727	11.105	0	0	0	33	0	SIK1	exonic	synonymous_SNV
RCC_T3--4	chr21:44838195	C	NA	37	0	37	65.054	3.930	0	0	0	37	0	SIK1	exonic	synonymous_SNV
RCC_T3--5	chr21:44838195	C	T	29	0.138	25	63.600	7.171	4	59.750	9.500	25	4	SIK1	exonic	synonymous_SNV
RCC_T3--6	chr21:44838195	C	NA	39	0	39	61.359	9.988	0	0	0	39	0	SIK1	exonic	synonymous_SNV
RCC_T3--7	chr21:44838195	C	NA	33	0	33	64.333	7.777	0	0	0	33	0	SIK1	exonic	synonymous_SNV
RCC_T3--8	chr21:44838195	C	NA	27	0	27	63.778	7.470	0	0	0	27	0	SIK1	exonic	synonymous_SNV
RCC_T3--GL	chr21:44838195	C	NA	36	0	36	64.972	6.708	0	0	0	36	0	SIK1	exonic	synonymous_SNV
RCC_T3--1	chr21:46276114	T	C	42	0.095	38	57.921	12.994	4	33.000	0.000	38	4	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--2	chr21:46276114	T	C	64	0.188	52	61.577	12.552	12	39.583	10.414	52	12	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--3	chr21:46276114	T	C	56	0.125	49	63.061	10.393	7	33.000	0.000	49	7	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--4	chr21:46276114	T	C	50	0.080	45	59.711	13.100	4	34.000	2.000	45	4	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--5	chr21:46276114	T	C	47	0.064	44	60.568	11.411	3	33.000	0.000	44	3	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--6	chr21:46276114	T	C	43	0.047	41	63.634	9.278	2	33.000	0.000	41	2	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--7	chr21:46276114	T	C	59	0.017	58	62.534	9.739	1	33.000	0.000	58	1	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--8	chr21:46276114	T	C	63	0.127	55	65.255	8.298	8	33.000	0.000	55	8	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--GL	chr21:46276114	T	NA	63	0	63	60.603	11.297	0	0	0	63	0	PTTG1IP	exonic	nonsynonymous_SNV
RCC_T3--1	chr21:46898368	A	G	34	0.176	28	67.857	3.039	6	67.500	3.146	28	6	COL18A1	intronic	NA
RCC_T3--2	chr21:46898368	A	G	30	0.267	22	67.955	3.401	8	70.625	2.722	22	8	COL18A1	intronic	NA
RCC_T3--3	chr21:46898368	A	G	38	0.211	30	68.733	4.042	8	69.625	3.021	30	8	COL18A1	intronic	NA
RCC_T3--4	chr21:46898368	A	G	45	0.222	35	68.857	3.474	10	69.200	2.394	35	10	COL18A1	intronic	NA
RCC_T3--5	chr21:46898368	A	NA	32	0	32	69.531	2.951	0	0	0	32	0	COL18A1	intronic	NA
RCC_T3--6	chr21:46898368	A	G	37	0.027	36	66.917	7.919	1	65.000	0.000	36	1	COL18A1	intronic	NA
RCC_T3--7	chr21:46898368	A	G	47	0.213	37	68.622	4.524	10	67.300	10.144	37	10	COL18A1	intronic	NA
RCC_T3--8	chr21:46898368	A	G	34	0.324	23	69.478	3.836	11	66.909	6.041	23	11	COL18A1	intronic	NA
RCC_T3--GL	chr21:46898368	A	NA	45	0	45	68.356	3.688	0	0	0	45	0	COL18A1	intronic	NA
RCC_T3--1	chr21:46914415	G	NA	42	0	41	65.659	6.556	0	0	0	41	0	COL18A1	intronic	NA
RCC_T3--2	chr21:46914415	G	NA	37	0	37	65.973	5.220	0	0	0	37	0	COL18A1	intronic	NA
RCC_T3--3	chr21:46914415	G	A	39	0.128	34	63.353	8.658	5	64.200	2.049	34	5	COL18A1	intronic	NA
RCC_T3--4	chr21:46914415	G	NA	26	0	26	67.115	4.320	0	0	0	26	0	COL18A1	intronic	NA
RCC_T3--5	chr21:46914415	G	NA	34	0	34	63.971	8.361	0	0	0	34	0	COL18A1	intronic	NA
RCC_T3--6	chr21:46914415	G	NA	36	0	36	61.361	8.970	0	0	0	36	0	COL18A1	intronic	NA
RCC_T3--7	chr21:46914415	G	A	44	0.023	43	65.140	8.219	1	72.000	0.000	43	1	COL18A1	intronic	NA
RCC_T3--8	chr21:46914415	G	NA	45	0	45	65.800	3.409	0	0	0	45	0	COL18A1	intronic	NA
RCC_T3--GL	chr21:46914415	G	NA	50	0	50	63.900	9.103	0	0	0	50	0	COL18A1	intronic	NA
RCC_T3--1	chr21:47703480	T	NA	24	0	24	59.125	11.121	0	0	0	24	0	MCM3AP	intronic	NA
RCC_T3--2	chr21:47703480	T	NA	34	0	34	57.853	9.882	0	0	0	34	0	MCM3AP	intronic	NA
RCC_T3--3	chr21:47703480	T	NA	27	0	27	59.111	10.725	0	0	0	27	0	MCM3AP	intronic	NA
RCC_T3--4	chr21:47703480	T	NA	32	0	32	58.406	10.954	0	0	0	32	0	MCM3AP	intronic	NA
RCC_T3--5	chr21:47703480	T	G	30	0.233	23	54.826	11.199	7	43.286	8.200	23	7	MCM3AP	intronic	NA
RCC_T3--6	chr21:47703480	T	NA	21	0	21	57.286	10.455	0	0	0	21	0	MCM3AP	intronic	NA
RCC_T3--7	chr21:47703480	T	G	34	0.088	31	52.355	13.923	3	36.667	3.215	31	3	MCM3AP	intronic	NA
RCC_T3--8	chr21:47703480	T	G	42	0.048	37	56.838	10.394	2	38.500	0.707	37	2	MCM3AP	intronic	NA
RCC_T3--GL	chr21:47703480	T	NA	39	0	38	55.289	11.304	0	0	0	38	0	MCM3AP	intronic	NA
RCC_T3--1	chr21:47967007	C	A	37	0.108	33	68.152	4.466	4	68.000	2.449	33	4	DIP2A	UTR3	NA
RCC_T3--2	chr21:47967007	C	NA	43	0	43	67.535	4.807	0	0	0	43	0	DIP2A	UTR3	NA
RCC_T3--3	chr21:47967007	C	NA	33	0	33	67.394	4.160	0	0	0	33	0	DIP2A	UTR3	NA
RCC_T3--4	chr21:47967007	C	NA	46	0	46	67.696	3.747	0	0	0	46	0	DIP2A	UTR3	NA
RCC_T3--5	chr21:47967007	C	NA	34	0	34	67.353	4.220	0	0	0	34	0	DIP2A	UTR3	NA
RCC_T3--6	chr21:47967007	C	NA	52	0	52	65.192	8.350	0	0	0	52	0	DIP2A	UTR3	NA
RCC_T3--7	chr21:47967007	C	A	58	0.052	55	66.182	4.410	3	72.000	0.000	55	3	DIP2A	UTR3	NA
RCC_T3--8	chr21:47967007	C	NA	34	0	33	67.030	7.033	0	0	0	33	0	DIP2A	UTR3	NA
RCC_T3--GL	chr21:47967007	C	NA	55	0	55	66.691	6.551	0	0	0	55	0	DIP2A	UTR3	NA
RCC_T3--1	chr21:47967027	G	NA	32	0	32	69.219	2.915	0	0	0	32	0	DIP2A	UTR3	NA
RCC_T3--2	chr21:47967027	G	NA	36	0	36	68.278	4.227	0	0	0	36	0	DIP2A	UTR3	NA
RCC_T3--3	chr21:47967027	G	T	32	0.125	28	68.429	4.459	4	69.000	2.944	28	4	DIP2A	UTR3	NA
RCC_T3--4	chr21:47967027	G	NA	46	0	46	68.565	4.167	0	0	0	46	0	DIP2A	UTR3	NA
RCC_T3--5	chr21:47967027	G	NA	35	0	35	67.314	4.880	0	0	0	35	0	DIP2A	UTR3	NA
RCC_T3--6	chr21:47967027	G	NA	38	0	38	66.237	8.432	0	0	0	38	0	DIP2A	UTR3	NA
RCC_T3--7	chr21:47967027	G	NA	48	0	48	68.438	3.892	0	0	0	48	0	DIP2A	UTR3	NA
RCC_T3--8	chr21:47967027	G	NA	26	0	26	69.731	2.779	0	0	0	26	0	DIP2A	UTR3	NA
RCC_T3--GL	chr21:47967027	G	NA	50	0	50	67.600	6.537	0	0	0	50	0	DIP2A	UTR3	NA
RCC_T3--1	chr21:47969908	A	NA	29	0	29	65.655	8.090	0	0	0	29	0	DIP2A	UTR3	NA
RCC_T3--2	chr21:47969908	A	NA	21	0	21	68.571	4.854	0	0	0	21	0	DIP2A	UTR3	NA
RCC_T3--3	chr21:47969908	A	NA	38	0	38	65.421	9.307	0	0	0	38	0	DIP2A	UTR3	NA
RCC_T3--4	chr21:47969908	A	NA	40	0	40	68.625	3.719	0	0	0	40	0	DIP2A	UTR3	NA
RCC_T3--5	chr21:47969908	A	NA	13	0	13	69.000	2.769	0	0	0	13	0	DIP2A	UTR3	NA
RCC_T3--6	chr21:47969908	A	C	21	0.143	18	69.111	3.787	3	54.333	14.224	18	3	DIP2A	UTR3	NA
RCC_T3--7	chr21:47969908	A	NA	28	0	28	66.964	7.739	0	0	0	28	0	DIP2A	UTR3	NA
RCC_T3--8	chr21:47969908	A	NA	29	0	29	67.448	7.510	0	0	0	29	0	DIP2A	UTR3	NA
RCC_T3--GL	chr21:47969908	A	NA	33	0	33	66.545	5.209	0	0	0	33	0	DIP2A	UTR3	NA
RCC_T3--1	chr2:160621095	G	T	101	0.208	80	67.950	6.784	21	69.238	2.548	80	21	MARCH7	intronic	NA
RCC_T3--2	chr2:160621095	G	T	110	0.191	89	69.371	3.666	21	69.857	3.665	89	21	MARCH7	intronic	NA
RCC_T3--3	chr2:160621095	G	T	150	0.260	111	69.126	3.795	39	69.000	3.479	111	39	MARCH7	intronic	NA
RCC_T3--4	chr2:160621095	G	T	111	0.207	88	68.602	4.672	23	69.739	4.854	88	23	MARCH7	intronic	NA
RCC_T3--5	chr2:160621095	G	T	85	0.059	80	68.125	5.814	5	70.400	2.074	80	5	MARCH7	intronic	NA
RCC_T3--6	chr2:160621095	G	T	156	0.083	142	68.155	4.772	13	70.769	1.363	142	13	MARCH7	intronic	NA
RCC_T3--7	chr2:160621095	G	T	122	0.238	93	68.839	3.731	29	70.000	2.035	93	29	MARCH7	intronic	NA
RCC_T3--8	chr2:160621095	G	T	114	0.333	76	69.763	3.011	38	69.395	4.341	76	38	MARCH7	intronic	NA
RCC_T3--GL	chr2:160621095	G	NA	78	0	78	68.167	5.758	0	0	0	78	0	MARCH7	intronic	NA
RCC_T3--1	chr2:160621096	C	T	103	0.214	81	68.704	4.584	22	68.727	4.049	81	22	MARCH7	intronic	NA
RCC_T3--2	chr2:160621096	C	T	111	0.198	89	69.360	3.266	22	69.500	3.277	89	22	MARCH7	intronic	NA
RCC_T3--3	chr2:160621096	C	T	150	0.260	111	69.505	3.168	39	69.513	3.051	111	39	MARCH7	intronic	NA
RCC_T3--4	chr2:160621096	C	T	113	0.221	88	68.659	5.010	25	68.680	6.382	88	25	MARCH7	intronic	NA
RCC_T3--5	chr2:160621096	C	T	88	0.057	83	68.434	5.292	5	71.000	1.000	83	5	MARCH7	intronic	NA
RCC_T3--6	chr2:160621096	C	T	157	0.083	144	68.514	4.366	13	71.000	1.155	144	13	MARCH7	intronic	NA
RCC_T3--7	chr2:160621096	C	T	123	0.244	93	68.957	3.352	30	70.133	2.113	93	30	MARCH7	intronic	NA
RCC_T3--8	chr2:160621096	C	T	117	0.325	79	69.481	3.117	38	69.763	2.963	79	38	MARCH7	intronic	NA
RCC_T3--GL	chr2:160621096	C	NA	78	0	78	68.564	4.678	0	0	0	78	0	MARCH7	intronic	NA
RCC_T3--1	chr2:161135124	G	NA	27	0	27	66.444	7.546	0	0	0	27	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:161135124	G	NA	55	0	55	65.291	7.760	0	0	0	55	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:161135124	G	NA	48	0	48	66.333	7.274	0	0	0	48	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:161135124	G	NA	40	0	40	65.900	7.493	0	0	0	40	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:161135124	G	A	45	0.133	38	66.500	6.841	6	63.500	5.857	38	6	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:161135124	G	NA	46	0	46	63.978	7.675	0	0	0	46	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:161135124	G	NA	34	0	34	66.265	7.107	0	0	0	34	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:161135124	G	NA	31	0	31	67.516	4.682	0	0	0	31	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:161135124	G	NA	37	0	37	67.135	4.668	0	0	0	37	0	RBMS1	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:170147612	T	C	22	0.273	16	67.188	8.635	6	69.333	4.633	16	6	LRP2	intronic	NA
RCC_T3--2	chr2:170147612	T	C	34	0.235	26	69.885	1.925	8	71.250	1.165	26	8	LRP2	intronic	NA
RCC_T3--3	chr2:170147612	T	C	30	0.200	24	68.958	2.742	6	70.667	2.422	24	6	LRP2	intronic	NA
RCC_T3--4	chr2:170147612	T	C	25	0.200	20	67.650	4.380	5	70.000	1.225	20	5	LRP2	intronic	NA
RCC_T3--5	chr2:170147612	T	NA	26	0	26	67.885	5.458	0	0	0	26	0	LRP2	intronic	NA
RCC_T3--6	chr2:170147612	T	C	26	0.231	20	69.750	3.307	6	66.667	3.777	20	6	LRP2	intronic	NA
RCC_T3--7	chr2:170147612	T	C	23	0.174	19	67.368	5.013	4	71.250	1.500	19	4	LRP2	intronic	NA
RCC_T3--8	chr2:170147612	T	C	40	0.225	31	67.774	4.341	9	68.556	4.419	31	9	LRP2	intronic	NA
RCC_T3--GL	chr2:170147612	T	NA	36	0	36	67.472	4.526	0	0	0	36	0	LRP2	intronic	NA
RCC_T3--1	chr2:170550654	A	NA	21	0	21	68.238	3.223	0	0	0	21	0	CCDC173	intronic	NA
RCC_T3--2	chr2:170550654	A	NA	17	0	17	66.647	4.649	0	0	0	17	0	CCDC173	intronic	NA
RCC_T3--3	chr2:170550654	A	NA	17	0	17	65.118	5.544	0	0	0	17	0	CCDC173	intronic	NA
RCC_T3--4	chr2:170550654	A	NA	15	0	15	65.333	7.771	0	0	0	15	0	CCDC173	intronic	NA
RCC_T3--5	chr2:170550654	A	G	17	0.176	14	63.286	10.887	3	70.000	1.000	14	3	CCDC173	intronic	NA
RCC_T3--6	chr2:170550654	A	NA	26	0	26	64.923	8.183	0	0	0	26	0	CCDC173	intronic	NA
RCC_T3--7	chr2:170550654	A	NA	25	0	25	67.400	4.778	0	0	0	25	0	CCDC173	intronic	NA
RCC_T3--8	chr2:170550654	A	NA	24	0	24	68.208	3.563	0	0	0	24	0	CCDC173	intronic	NA
RCC_T3--GL	chr2:170550654	A	NA	36	0	36	64.139	7.302	0	0	0	36	0	CCDC173	intronic	NA
RCC_T3--1	chr2:171675110	T	A	37	0.108	33	64.424	6.042	4	65.000	1.155	33	4	GAD1	exonic	synonymous_SNV
RCC_T3--2	chr2:171675110	T	A	116	0.009	115	62.000	8.646	1	33.000	0.000	115	1	GAD1	exonic	synonymous_SNV
RCC_T3--3	chr2:171675110	T	NA	103	0	103	64.010	7.686	0	0	0	103	0	GAD1	exonic	synonymous_SNV
RCC_T3--4	chr2:171675110	T	NA	101	0	101	63.257	7.249	0	0	0	101	0	GAD1	exonic	synonymous_SNV
RCC_T3--5	chr2:171675110	T	NA	106	0	105	62.410	8.227	0	0	0	105	0	GAD1	exonic	synonymous_SNV
RCC_T3--6	chr2:171675110	T	NA	70	0	70	63.800	4.904	0	0	0	70	0	GAD1	exonic	synonymous_SNV
RCC_T3--7	chr2:171675110	T	NA	78	0	78	62.154	9.957	0	0	0	78	0	GAD1	exonic	synonymous_SNV
RCC_T3--8	chr2:171675110	T	NA	73	0	73	63.151	7.152	0	0	0	73	0	GAD1	exonic	synonymous_SNV
RCC_T3--GL	chr2:171675110	T	NA	96	0	96	59.240	10.881	0	0	0	96	0	GAD1	exonic	synonymous_SNV
RCC_T3--1	chr2:173429499	G	T	28	0.036	19	70.368	2.432	1	65.000	0.000	19	1	PDK1	intronic	NA
RCC_T3--2	chr2:173429499	G	T	61	0.049	32	68.750	4.143	3	65.000	0.000	32	3	PDK1	intronic	NA
RCC_T3--3	chr2:173429499	G	NA	31	0	18	68.722	5.758	0	0	0	18	0	PDK1	intronic	NA
RCC_T3--4	chr2:173429499	G	T	44	0.023	23	69.217	3.204	1	63.000	0.000	23	1	PDK1	intronic	NA
RCC_T3--5	chr2:173429499	G	T	36	0.167	17	69.588	3.641	6	64.500	5.822	17	6	PDK1	intronic	NA
RCC_T3--6	chr2:173429499	G	NA	48	0	33	69.636	2.089	0	0	0	33	0	PDK1	intronic	NA
RCC_T3--7	chr2:173429499	G	NA	36	0	17	66.412	6.671	0	0	0	17	0	PDK1	intronic	NA
RCC_T3--8	chr2:173429499	G	T	40	0.025	21	69.381	3.025	1	62.000	0.000	21	1	PDK1	intronic	NA
RCC_T3--GL	chr2:173429499	G	NA	63	0	41	66.610	8.071	0	0	0	41	0	PDK1	intronic	NA
RCC_T3--1	chr2:173429500	G	T	29	0.034	20	69.650	3.964	1	68.000	0.000	20	1	PDK1	intronic	NA
RCC_T3--2	chr2:173429500	G	T	61	0.049	32	67.688	4.889	3	68.000	0.000	32	3	PDK1	intronic	NA
RCC_T3--3	chr2:173429500	G	NA	29	0	16	70.438	1.931	0	0	0	16	0	PDK1	intronic	NA
RCC_T3--4	chr2:173429500	G	T	44	0.023	23	69.348	3.725	1	57.000	0.000	23	1	PDK1	intronic	NA
RCC_T3--5	chr2:173429500	G	T	35	0.171	16	70.000	4.147	6	63.667	7.312	16	6	PDK1	intronic	NA
RCC_T3--6	chr2:173429500	G	NA	46	0	31	69.097	3.070	0	0	0	31	0	PDK1	intronic	NA
RCC_T3--7	chr2:173429500	G	NA	34	0	15	65.933	9.177	0	0	0	15	0	PDK1	intronic	NA
RCC_T3--8	chr2:173429500	G	T	41	0.073	20	68.750	3.892	3	63.000	4.359	20	3	PDK1	intronic	NA
RCC_T3--GL	chr2:173429500	G	NA	63	0	41	66.780	6.926	0	0	0	41	0	PDK1	intronic	NA
RCC_T3--1	chr2:175260178	G	NA	25	0	25	67.160	5.757	0	0	0	25	0	CIR1	intronic	NA
RCC_T3--2	chr2:175260178	G	NA	37	0	37	65.459	8.167	0	0	0	37	0	CIR1	intronic	NA
RCC_T3--3	chr2:175260178	G	NA	40	0	40	65.975	6.011	0	0	0	40	0	CIR1	intronic	NA
RCC_T3--4	chr2:175260178	G	NA	40	0	40	65.575	6.987	0	0	0	40	0	CIR1	intronic	NA
RCC_T3--5	chr2:175260178	G	NA	32	0	32	66.031	5.480	0	0	0	32	0	CIR1	intronic	NA
RCC_T3--6	chr2:175260178	G	T	30	0.133	26	67.462	5.171	4	63.750	3.403	26	4	CIR1	intronic	NA
RCC_T3--7	chr2:175260178	G	NA	58	0	58	65.207	7.198	0	0	0	58	0	CIR1	intronic	NA
RCC_T3--8	chr2:175260178	G	NA	27	0	27	62.370	10.274	0	0	0	27	0	CIR1	intronic	NA
RCC_T3--GL	chr2:175260178	G	NA	48	0	48	66.000	5.469	0	0	0	48	0	CIR1	intronic	NA
RCC_T3--1	chr2:179649158	A	NA	25	0	25	67.240	4.126	0	0	0	25	0	TTN	intronic	NA
RCC_T3--2	chr2:179649158	A	NA	32	0	32	66.531	6.525	0	0	0	32	0	TTN	intronic	NA
RCC_T3--3	chr2:179649158	A	NA	37	0	37	67.351	5.682	0	0	0	37	0	TTN	intronic	NA
RCC_T3--4	chr2:179649158	A	T	35	0.114	31	68.516	2.644	4	67.000	5.292	31	4	TTN	intronic	NA
RCC_T3--5	chr2:179649158	A	NA	34	0	34	66.000	6.420	0	0	0	34	0	TTN	intronic	NA
RCC_T3--6	chr2:179649158	A	NA	22	0	22	66.955	4.933	0	0	0	22	0	TTN	intronic	NA
RCC_T3--7	chr2:179649158	A	NA	41	0	41	66.171	5.558	0	0	0	41	0	TTN	intronic	NA
RCC_T3--8	chr2:179649158	A	NA	39	0	39	68.051	5.099	0	0	0	39	0	TTN	intronic	NA
RCC_T3--GL	chr2:179649158	A	NA	39	0	39	67.821	3.748	0	0	0	39	0	TTN	intronic	NA
RCC_T3--1	chr2:183053484	C	NA	35	0	34	68.971	2.897	0	0	0	34	0	PDE1A	intronic	NA
RCC_T3--2	chr2:183053484	C	NA	27	0	27	68.481	4.611	0	0	0	27	0	PDE1A	intronic	NA
RCC_T3--3	chr2:183053484	C	NA	26	0	26	68.385	3.579	0	0	0	26	0	PDE1A	intronic	NA
RCC_T3--4	chr2:183053484	C	NA	26	0	26	67.962	6.226	0	0	0	26	0	PDE1A	intronic	NA
RCC_T3--5	chr2:183053484	C	T	20	0.200	16	68.750	3.317	4	63.500	1.732	16	4	PDE1A	intronic	NA
RCC_T3--6	chr2:183053484	C	NA	22	0	22	69.318	2.457	0	0	0	22	0	PDE1A	intronic	NA
RCC_T3--7	chr2:183053484	C	NA	32	0	32	69.000	3.408	0	0	0	32	0	PDE1A	intronic	NA
RCC_T3--8	chr2:183053484	C	NA	19	0	19	69.684	2.668	0	0	0	19	0	PDE1A	intronic	NA
RCC_T3--GL	chr2:183053484	C	NA	38	0	38	68.474	3.516	0	0	0	38	0	PDE1A	intronic	NA
RCC_T3--1	chr2:191843589	G	NA	30	0	30	67.800	4.278	0	0	0	30	0	STAT1	exonic	synonymous_SNV
RCC_T3--2	chr2:191843589	G	NA	36	0	36	68.667	2.575	0	0	0	36	0	STAT1	exonic	synonymous_SNV
RCC_T3--3	chr2:191843589	G	NA	40	0	40	64.300	8.453	0	0	0	40	0	STAT1	exonic	synonymous_SNV
RCC_T3--4	chr2:191843589	G	A	35	0.114	31	64.032	10.772	4	63.500	2.380	31	4	STAT1	exonic	synonymous_SNV
RCC_T3--5	chr2:191843589	G	NA	26	0	26	64.231	7.946	0	0	0	26	0	STAT1	exonic	synonymous_SNV
RCC_T3--6	chr2:191843589	G	NA	44	0	44	67.614	4.105	0	0	0	44	0	STAT1	exonic	synonymous_SNV
RCC_T3--7	chr2:191843589	G	NA	41	0	41	65.732	8.746	0	0	0	41	0	STAT1	exonic	synonymous_SNV
RCC_T3--8	chr2:191843589	G	NA	44	0	44	66.886	4.751	0	0	0	44	0	STAT1	exonic	synonymous_SNV
RCC_T3--GL	chr2:191843589	G	NA	52	0	52	66.538	4.128	0	0	0	52	0	STAT1	exonic	synonymous_SNV
RCC_T3--1	chr2:206610602	T	NA	36	0	36	63.611	10.937	0	0	0	36	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:206610602	T	NA	58	0	58	64.345	10.146	0	0	0	58	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:206610602	T	NA	40	0	40	65.600	8.089	0	0	0	40	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:206610602	T	NA	38	0	38	65.079	8.035	0	0	0	38	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:206610602	T	NA	32	0	32	62.562	11.992	0	0	0	32	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:206610602	T	NA	40	0	40	60.900	12.860	0	0	0	40	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:206610602	T	NA	43	0	43	63.279	11.419	0	0	0	43	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:206610602	T	C	43	0.140	37	65.162	8.833	6	57.333	12.707	37	6	NRP2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:206610602	T	NA	44	0	44	65.409	8.472	0	0	0	44	0	NRP2	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:210012347	A	NA	31	0	31	60.484	7.844	0	0	0	31	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--2	chr2:210012347	A	NA	38	0	36	61.306	7.254	0	0	0	36	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--3	chr2:210012347	A	NA	29	0	29	62.172	6.054	0	0	0	29	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--4	chr2:210012347	A	G	46	0.022	44	61.795	8.088	1	37.000	0.000	44	1	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--5	chr2:210012347	A	NA	29	0	27	61.222	8.684	0	0	0	27	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--6	chr2:210012347	A	G	40	0.125	35	60.400	8.958	5	58.800	12.558	35	5	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--7	chr2:210012347	A	NA	56	0	56	58.929	9.171	0	0	0	56	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--8	chr2:210012347	A	NA	45	0	45	61.067	8.470	0	0	0	45	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--GL	chr2:210012347	A	NA	36	0	35	60.000	8.503	0	0	0	35	0	PTH2R(dist=653116),MAP2(dist=276424)	intergenic	NA
RCC_T3--1	chr22:18300434	G	NA	41	0	41	63.927	7.920	0	0	0	41	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:18300434	G	NA	47	0	47	62.404	9.355	0	0	0	47	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:18300434	G	NA	51	0	51	65.804	4.243	0	0	0	51	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:18300434	G	NA	39	0	39	66.487	5.960	0	0	0	39	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:18300434	G	A	54	0.111	48	61.979	9.593	6	59.167	12.922	48	6	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:18300434	G	NA	47	0	47	65.830	3.403	0	0	0	47	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:18300434	G	NA	53	0	53	65.509	7.135	0	0	0	53	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:18300434	G	NA	37	0	37	63.622	8.973	0	0	0	37	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:18300434	G	NA	50	0	50	62.780	9.727	0	0	0	50	0	MICAL3	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:219232030	C	NA	25	0	25	68.480	5.394	0	0	0	25	0	CATIP	intronic	NA
RCC_T3--2	chr2:219232030	C	NA	27	0	27	67.926	7.348	0	0	0	27	0	CATIP	intronic	NA
RCC_T3--3	chr2:219232030	C	NA	26	0	26	69.308	3.718	0	0	0	26	0	CATIP	intronic	NA
RCC_T3--4	chr2:219232030	C	NA	23	0	23	69.870	2.912	0	0	0	23	0	CATIP	intronic	NA
RCC_T3--5	chr2:219232030	C	NA	20	0	20	67.700	4.725	0	0	0	20	0	CATIP	intronic	NA
RCC_T3--6	chr2:219232030	C	A	18	0.167	15	68.067	6.147	3	62.000	0.000	15	3	CATIP	intronic	NA
RCC_T3--7	chr2:219232030	C	NA	37	0	37	67.730	4.857	0	0	0	37	0	CATIP	intronic	NA
RCC_T3--8	chr2:219232030	C	NA	33	0	33	66.970	5.791	0	0	0	33	0	CATIP	intronic	NA
RCC_T3--GL	chr2:219232030	C	NA	45	0	45	66.467	8.089	0	0	0	45	0	CATIP	intronic	NA
RCC_T3--1	chr2:219294010	C	NA	27	0	27	66.037	3.787	0	0	0	27	0	VIL1	exonic	synonymous_SNV
RCC_T3--2	chr2:219294010	C	NA	39	0	39	66.590	4.666	0	0	0	39	0	VIL1	exonic	synonymous_SNV
RCC_T3--3	chr2:219294010	C	NA	35	0	35	66.686	6.159	0	0	0	35	0	VIL1	exonic	synonymous_SNV
RCC_T3--4	chr2:219294010	C	NA	32	0	32	66.469	3.645	0	0	0	32	0	VIL1	exonic	synonymous_SNV
RCC_T3--5	chr2:219294010	C	A	40	0.150	34	67.441	5.991	6	64.833	3.869	34	6	VIL1	exonic	synonymous_SNV
RCC_T3--6	chr2:219294010	C	NA	45	0	45	65.622	6.886	0	0	0	45	0	VIL1	exonic	synonymous_SNV
RCC_T3--7	chr2:219294010	C	NA	41	0	41	65.073	6.608	0	0	0	41	0	VIL1	exonic	synonymous_SNV
RCC_T3--8	chr2:219294010	C	NA	40	0	40	65.550	6.598	0	0	0	40	0	VIL1	exonic	synonymous_SNV
RCC_T3--GL	chr2:219294010	C	NA	51	0	51	64.196	8.104	0	0	0	51	0	VIL1	exonic	synonymous_SNV
RCC_T3--1	chr2:219529916	C	A	43	0.140	37	65.405	6.792	6	67.333	3.266	37	6	RNF25	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:219529916	C	NA	76	0	76	66.000	6.753	0	0	0	76	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:219529916	C	A	95	0.011	94	65.064	8.810	1	40.000	0.000	94	1	RNF25	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:219529916	C	NA	75	0	75	66.173	7.491	0	0	0	75	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:219529916	C	NA	82	0	82	64.988	5.734	0	0	0	82	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:219529916	C	NA	80	0	80	66.338	4.053	0	0	0	80	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:219529916	C	NA	59	0	59	66.627	5.372	0	0	0	59	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:219529916	C	NA	65	0	65	63.462	9.675	0	0	0	65	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:219529916	C	NA	68	0	68	64.441	6.983	0	0	0	68	0	RNF25	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:219564153	T	A	30	0.100	27	68.704	2.599	3	64.333	5.774	27	3	STK36	intronic	NA
RCC_T3--2	chr2:219564153	T	A	31	0.290	22	67.182	7.028	9	69.000	2.500	22	9	STK36	intronic	NA
RCC_T3--3	chr2:219564153	T	A	32	0.219	25	67.200	2.828	7	67.571	1.902	25	7	STK36	intronic	NA
RCC_T3--4	chr2:219564153	T	A	38	0.263	28	66.250	7.209	10	67.300	4.923	28	10	STK36	intronic	NA
RCC_T3--5	chr2:219564153	T	NA	20	0	20	67.800	4.775	0	0	0	20	0	STK36	intronic	NA
RCC_T3--6	chr2:219564153	T	A	21	0.048	20	65.400	9.355	1	58.000	0.000	20	1	STK36	intronic	NA
RCC_T3--7	chr2:219564153	T	A	28	0.214	22	67.000	4.771	6	70.000	2.757	22	6	STK36	intronic	NA
RCC_T3--8	chr2:219564153	T	A	39	0.128	34	68.559	3.979	5	61.200	16.022	34	5	STK36	intronic	NA
RCC_T3--GL	chr2:219564153	T	NA	34	0	34	63.853	8.985	0	0	0	34	0	STK36	intronic	NA
RCC_T3--1	chr2:220033897	C	T	57	0.228	44	68.591	3.706	13	68.154	3.078	44	13	SLC23A3	intronic	NA
RCC_T3--2	chr2:220033897	C	T	74	0.162	62	67.935	5.986	12	68.833	3.099	62	12	SLC23A3	intronic	NA
RCC_T3--3	chr2:220033897	C	T	64	0.250	48	68.417	4.331	16	67.312	5.474	48	16	SLC23A3	intronic	NA
RCC_T3--4	chr2:220033897	C	T	80	0.225	62	68.774	3.851	18	69.222	3.524	62	18	SLC23A3	intronic	NA
RCC_T3--5	chr2:220033897	C	T	49	0.041	47	67.000	5.337	2	64.000	5.657	47	2	SLC23A3	intronic	NA
RCC_T3--6	chr2:220033897	C	T	62	0.129	54	65.833	5.305	8	67.375	4.138	54	8	SLC23A3	intronic	NA
RCC_T3--7	chr2:220033897	C	T	77	0.221	60	67.583	6.110	17	69.471	2.961	60	17	SLC23A3	intronic	NA
RCC_T3--8	chr2:220033897	C	T	76	0.250	57	67.246	4.584	19	68.368	4.085	57	19	SLC23A3	intronic	NA
RCC_T3--GL	chr2:220033897	C	NA	61	0	61	65.066	9.031	0	0	0	61	0	SLC23A3	intronic	NA
RCC_T3--1	chr2:220033905	G	A	58	0.207	46	68.283	4.020	12	67.167	4.366	46	12	SLC23A3	intronic	NA
RCC_T3--2	chr2:220033905	G	A	83	0.145	71	66.437	7.141	12	68.083	3.965	71	12	SLC23A3	intronic	NA
RCC_T3--3	chr2:220033905	G	A	67	0.254	50	66.940	7.636	17	66.176	9.541	50	17	SLC23A3	intronic	NA
RCC_T3--4	chr2:220033905	G	A	86	0.221	67	67.493	5.925	19	68.368	4.437	67	19	SLC23A3	intronic	NA
RCC_T3--5	chr2:220033905	G	A	55	0.036	51	65.510	7.839	2	71.500	0.707	51	2	SLC23A3	intronic	NA
RCC_T3--6	chr2:220033905	G	A	61	0.131	53	67.642	3.711	8	68.250	2.964	53	8	SLC23A3	intronic	NA
RCC_T3--7	chr2:220033905	G	A	85	0.212	67	67.985	4.368	18	68.556	5.032	67	18	SLC23A3	intronic	NA
RCC_T3--8	chr2:220033905	G	A	76	0.289	54	67.370	6.747	22	68.682	3.759	54	22	SLC23A3	intronic	NA
RCC_T3--GL	chr2:220033905	G	NA	71	0	71	65.746	6.876	0	0	0	71	0	SLC23A3	intronic	NA
RCC_T3--1	chr2:220498182	C	A	37	0.108	33	67.939	3.381	4	64.750	7.182	33	4	SLC4A3	intronic	NA
RCC_T3--2	chr2:220498182	C	NA	38	0	38	66.921	6.356	0	0	0	38	0	SLC4A3	intronic	NA
RCC_T3--3	chr2:220498182	C	NA	29	0	29	66.862	5.303	0	0	0	29	0	SLC4A3	intronic	NA
RCC_T3--4	chr2:220498182	C	NA	37	0	37	66.946	4.176	0	0	0	37	0	SLC4A3	intronic	NA
RCC_T3--5	chr2:220498182	C	NA	29	0	29	65.897	5.473	0	0	0	29	0	SLC4A3	intronic	NA
RCC_T3--6	chr2:220498182	C	NA	30	0	30	62.700	9.827	0	0	0	30	0	SLC4A3	intronic	NA
RCC_T3--7	chr2:220498182	C	NA	39	0	39	66.103	6.920	0	0	0	39	0	SLC4A3	intronic	NA
RCC_T3--8	chr2:220498182	C	NA	41	0	41	65.951	7.915	0	0	0	41	0	SLC4A3	intronic	NA
RCC_T3--GL	chr2:220498182	C	NA	42	0	42	64.786	6.449	0	0	0	42	0	SLC4A3	intronic	NA
RCC_T3--1	chr22:23063337	C	NA	39	0	39	69.154	3.142	0	0	0	39	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--2	chr22:23063337	C	NA	33	0	33	68.030	4.433	0	0	0	33	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--3	chr22:23063337	C	NA	40	0	40	67.450	3.796	0	0	0	40	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--4	chr22:23063337	C	NA	18	0	18	69.056	3.489	0	0	0	18	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--5	chr22:23063337	C	A	24	0.167	20	68.650	4.271	4	67.250	2.062	20	4	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--6	chr22:23063337	C	NA	41	0	41	67.732	5.367	0	0	0	41	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--7	chr22:23063337	C	NA	33	0	33	67.909	4.275	0	0	0	33	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--8	chr22:23063337	C	NA	27	0	27	68.519	3.817	0	0	0	27	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--GL	chr22:23063337	C	NA	33	0	33	67.394	5.147	0	0	0	33	0	GGTLC2(dist=72969),MIR650(dist=101933)	intergenic	NA
RCC_T3--1	chr2:223542337	A	NA	29	0	29	67.966	3.510	0	0	0	29	0	MOGAT1	intronic	NA
RCC_T3--2	chr2:223542337	A	NA	47	0	46	68.565	3.082	0	0	0	46	0	MOGAT1	intronic	NA
RCC_T3--3	chr2:223542337	A	NA	28	0	28	66.714	4.775	0	0	0	28	0	MOGAT1	intronic	NA
RCC_T3--4	chr2:223542337	A	NA	25	0	25	67.320	7.652	0	0	0	25	0	MOGAT1	intronic	NA
RCC_T3--5	chr2:223542337	A	NA	27	0	27	66.815	6.788	0	0	0	27	0	MOGAT1	intronic	NA
RCC_T3--6	chr2:223542337	A	T	21	0.048	20	68.050	5.530	1	49.000	0.000	20	1	MOGAT1	intronic	NA
RCC_T3--7	chr2:223542337	A	NA	31	0	31	67.516	3.974	0	0	0	31	0	MOGAT1	intronic	NA
RCC_T3--8	chr2:223542337	A	T	19	0.158	16	64.938	7.505	3	62.667	4.041	16	3	MOGAT1	intronic	NA
RCC_T3--GL	chr2:223542337	A	NA	33	0	33	66.879	4.386	0	0	0	33	0	MOGAT1	intronic	NA
RCC_T3--1	chr22:24583307	G	NA	36	0	36	65.889	7.444	0	0	0	36	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:24583307	G	NA	42	0	42	67.548	4.068	0	0	0	42	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:24583307	G	NA	53	0	53	65.906	4.452	0	0	0	53	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:24583307	G	A	49	0.122	43	65.535	4.590	6	68.000	3.521	43	6	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:24583307	G	NA	60	0	60	64.933	7.774	0	0	0	60	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:24583307	G	NA	41	0	41	64.439	8.252	0	0	0	41	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:24583307	G	NA	38	0	38	66.526	7.392	0	0	0	38	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:24583307	G	NA	42	0	42	65.262	8.187	0	0	0	42	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:24583307	G	NA	38	0	38	66.053	5.437	0	0	0	38	0	SUSD2	exonic	nonsynonymous_SNV
RCC_T3--1	chr22:26829596	C	NA	25	0	25	68.160	3.037	0	0	0	25	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--2	chr22:26829596	C	NA	29	0	29	67.310	4.457	0	0	0	29	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--3	chr22:26829596	C	NA	30	0	30	64.800	5.863	0	0	0	30	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--4	chr22:26829596	C	NA	29	0	29	67.655	3.578	0	0	0	29	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--5	chr22:26829596	C	NA	25	0	25	65.400	5.354	0	0	0	25	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--6	chr22:26829596	C	NA	24	0	24	65.792	5.381	0	0	0	24	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--7	chr22:26829596	C	A	16	0.188	13	66.462	4.034	3	71.667	0.577	13	3	ASPHD2	exonic	synonymous_SNV
RCC_T3--8	chr22:26829596	C	NA	24	0	24	68.167	3.830	0	0	0	24	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--GL	chr22:26829596	C	NA	33	0	33	65.909	5.570	0	0	0	33	0	ASPHD2	exonic	synonymous_SNV
RCC_T3--1	chr22:26830012	G	A	33	0.121	28	68.071	4.268	4	58.000	13.367	28	4	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:26830012	G	NA	36	0	36	63.917	9.238	0	0	0	36	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:26830012	G	NA	33	0	33	64.121	9.229	0	0	0	33	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:26830012	G	NA	42	0	42	63.190	9.495	0	0	0	42	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:26830012	G	NA	41	0	41	62.634	10.968	0	0	0	41	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:26830012	G	NA	39	0	39	65.513	6.924	0	0	0	39	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:26830012	G	NA	47	0	47	64.787	7.437	0	0	0	47	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:26830012	G	NA	42	0	42	60.571	10.170	0	0	0	42	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:26830012	G	NA	51	0	50	63.020	8.185	0	0	0	50	0	ASPHD2	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:228153846	T	C	35	0.200	28	67.857	4.592	7	68.571	3.645	28	7	AC097662.2	ncRNA_intronic	NA
RCC_T3--2	chr2:228153846	T	C	38	0.237	29	68.759	3.542	9	68.444	5.769	29	9	AC097662.2	ncRNA_intronic	NA
RCC_T3--3	chr2:228153846	T	C	34	0.206	27	67.222	5.323	7	69.857	2.734	27	7	AC097662.2	ncRNA_intronic	NA
RCC_T3--4	chr2:228153846	T	C	46	0.152	38	68.132	3.892	7	66.714	2.690	38	7	AC097662.2	ncRNA_intronic	NA
RCC_T3--5	chr2:228153846	T	C	50	0.020	49	66.612	5.982	1	71.000	0.000	49	1	AC097662.2	ncRNA_intronic	NA
RCC_T3--6	chr2:228153846	T	C	34	0.029	33	67.212	4.695	1	67.000	0.000	33	1	AC097662.2	ncRNA_intronic	NA
RCC_T3--7	chr2:228153846	T	C	37	0.351	24	68.375	2.826	13	68.154	3.870	24	13	AC097662.2	ncRNA_intronic	NA
RCC_T3--8	chr2:228153846	T	C	55	0.218	43	68.395	3.941	12	66.083	3.655	43	12	AC097662.2	ncRNA_intronic	NA
RCC_T3--GL	chr2:228153846	T	NA	37	0	37	65.946	6.359	0	0	0	37	0	AC097662.2	ncRNA_intronic	NA
RCC_T3--1	chr22:30184901	T	G	33	0.061	31	58.613	13.068	2	34.500	2.121	31	2	ASCC2	UTR3	NA
RCC_T3--2	chr22:30184901	T	G	33	0.182	27	60.333	8.138	6	35.167	4.021	27	6	ASCC2	UTR3	NA
RCC_T3--3	chr22:30184901	T	G	35	0.057	32	58.781	8.427	2	36.000	4.243	32	2	ASCC2	UTR3	NA
RCC_T3--4	chr22:30184901	T	G	41	0.024	40	57.425	10.777	1	37.000	0.000	40	1	ASCC2	UTR3	NA
RCC_T3--5	chr22:30184901	T	NA	18	0	18	60.611	6.946	0	0	0	18	0	ASCC2	UTR3	NA
RCC_T3--6	chr22:30184901	T	G	35	0.057	33	59.000	9.317	2	35.500	3.536	33	2	ASCC2	UTR3	NA
RCC_T3--7	chr22:30184901	T	G	32	0.031	31	61.258	6.976	1	37.000	0.000	31	1	ASCC2	UTR3	NA
RCC_T3--8	chr22:30184901	T	G	38	0.053	36	58.389	10.330	2	35.500	3.536	36	2	ASCC2	UTR3	NA
RCC_T3--GL	chr22:30184901	T	NA	53	0	53	57.623	9.877	0	0	0	53	0	ASCC2	UTR3	NA
RCC_T3--1	chr22:31487444	C	NA	26	0	26	64.154	5.128	0	0	0	26	0	SMTN	exonic	synonymous_SNV
RCC_T3--2	chr22:31487444	C	NA	37	0	37	64.162	4.997	0	0	0	37	0	SMTN	exonic	synonymous_SNV
RCC_T3--3	chr22:31487444	C	NA	31	0	31	65.097	7.825	0	0	0	31	0	SMTN	exonic	synonymous_SNV
RCC_T3--4	chr22:31487444	C	T	37	0.108	33	63.273	10.079	4	66.250	4.500	33	4	SMTN	exonic	synonymous_SNV
RCC_T3--5	chr22:31487444	C	NA	32	0	32	62.594	9.373	0	0	0	32	0	SMTN	exonic	synonymous_SNV
RCC_T3--6	chr22:31487444	C	NA	37	0	37	63.135	8.686	0	0	0	37	0	SMTN	exonic	synonymous_SNV
RCC_T3--7	chr22:31487444	C	NA	37	0	37	64.432	7.399	0	0	0	37	0	SMTN	exonic	synonymous_SNV
RCC_T3--8	chr22:31487444	C	T	32	0.031	31	63.645	6.641	1	67.000	0.000	31	1	SMTN	exonic	synonymous_SNV
RCC_T3--GL	chr22:31487444	C	NA	43	0	43	60.698	11.294	0	0	0	43	0	SMTN	exonic	synonymous_SNV
RCC_T3--1	chr22:31740843	G	NA	34	0	34	65.971	4.239	0	0	0	34	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:31740843	G	NA	29	0	29	65.621	7.360	0	0	0	29	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:31740843	G	NA	23	0	23	67.609	4.109	0	0	0	23	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:31740843	G	NA	24	0	24	68.208	2.843	0	0	0	24	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:31740843	G	T	20	0.150	17	66.706	4.012	3	61.667	0.577	17	3	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:31740843	G	NA	25	0	24	66.750	5.651	0	0	0	24	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:31740843	G	NA	27	0	27	67.259	4.329	0	0	0	27	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:31740843	G	NA	36	0	36	64.417	5.867	0	0	0	36	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:31740843	G	NA	34	0	33	66.061	4.520	0	0	0	33	0	PATZ1	exonic	nonsynonymous_SNV
RCC_T3--1	chr22:32937690	C	NA	47	0	47	64.553	8.871	0	0	0	47	0	SYN3	exonic	stopgain_SNV
RCC_T3--2	chr22:32937690	C	NA	42	0	42	68.048	2.987	0	0	0	42	0	SYN3	exonic	stopgain_SNV
RCC_T3--3	chr22:32937690	C	A	37	0.108	33	64.121	9.845	4	65.000	4.690	33	4	SYN3	exonic	stopgain_SNV
RCC_T3--4	chr22:32937690	C	NA	42	0	41	66.171	5.594	0	0	0	41	0	SYN3	exonic	stopgain_SNV
RCC_T3--5	chr22:32937690	C	NA	42	0	42	67.476	3.285	0	0	0	42	0	SYN3	exonic	stopgain_SNV
RCC_T3--6	chr22:32937690	C	NA	39	0	39	64.282	7.595	0	0	0	39	0	SYN3	exonic	stopgain_SNV
RCC_T3--7	chr22:32937690	C	NA	38	0	38	65.447	4.032	0	0	0	38	0	SYN3	exonic	stopgain_SNV
RCC_T3--8	chr22:32937690	C	NA	39	0	39	66.154	6.107	0	0	0	39	0	SYN3	exonic	stopgain_SNV
RCC_T3--GL	chr22:32937690	C	NA	53	0	53	64.151	6.389	0	0	0	53	0	SYN3	exonic	stopgain_SNV
RCC_T3--1	chr22:38212706	T	A	29	0.138	25	64.600	10.058	4	69.000	3.464	25	4	GCAT	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:38212706	T	NA	75	0	75	65.520	6.925	0	0	0	75	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:38212706	T	NA	59	0	59	62.576	9.052	0	0	0	59	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:38212706	T	NA	45	0	45	62.689	9.366	0	0	0	45	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:38212706	T	NA	39	0	39	63.385	10.174	0	0	0	39	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:38212706	T	NA	45	0	45	64.356	6.961	0	0	0	45	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:38212706	T	NA	57	0	57	63.439	8.683	0	0	0	57	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:38212706	T	NA	45	0	45	63.422	9.500	0	0	0	45	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:38212706	T	NA	58	0	58	62.897	9.124	0	0	0	58	0	GCAT	exonic	nonsynonymous_SNV
RCC_T3--1	chr22:38219639	G	NA	31	0	31	66.548	4.625	0	0	0	31	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:38219639	G	NA	41	0	41	64.195	6.585	0	0	0	41	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:38219639	G	NA	38	0	38	66.263	5.490	0	0	0	38	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:38219639	G	NA	31	0	31	66.484	4.661	0	0	0	31	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:38219639	G	A	24	0.167	20	67.500	5.443	4	63.750	10.243	20	4	GALR3	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:38219639	G	NA	52	0	52	64.615	7.922	0	0	0	52	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:38219639	G	NA	47	0	47	65.787	7.879	0	0	0	47	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:38219639	G	NA	50	0	50	62.920	9.670	0	0	0	50	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:38219639	G	NA	55	0	55	63.236	9.236	0	0	0	55	0	GALR3	exonic	nonsynonymous_SNV
RCC_T3--1	chr22:38266413	C	NA	26	0	26	66.192	7.510	0	0	0	26	0	EIF3L	intronic	NA
RCC_T3--2	chr22:38266413	C	NA	21	0	21	68.857	3.525	0	0	0	21	0	EIF3L	intronic	NA
RCC_T3--3	chr22:38266413	C	NA	30	0	30	67.500	5.237	0	0	0	30	0	EIF3L	intronic	NA
RCC_T3--4	chr22:38266413	C	NA	29	0	29	68.621	4.212	0	0	0	29	0	EIF3L	intronic	NA
RCC_T3--5	chr22:38266413	C	NA	29	0	29	68.897	3.519	0	0	0	29	0	EIF3L	intronic	NA
RCC_T3--6	chr22:38266413	C	NA	24	0	24	68.167	5.079	0	0	0	24	0	EIF3L	intronic	NA
RCC_T3--7	chr22:38266413	C	NA	29	0	29	67.586	5.186	0	0	0	29	0	EIF3L	intronic	NA
RCC_T3--8	chr22:38266413	C	A	34	0.147	29	66.621	8.178	5	66.600	4.037	29	5	EIF3L	intronic	NA
RCC_T3--GL	chr22:38266413	C	NA	38	0	38	67.526	4.920	0	0	0	38	0	EIF3L	intronic	NA
RCC_T3--1	chr2:238449450	C	NA	20	0	19	67.263	4.942	0	0	0	19	0	MLPH	exonic	synonymous_SNV
RCC_T3--2	chr2:238449450	C	NA	52	0	52	64.846	8.562	0	0	0	52	0	MLPH	exonic	synonymous_SNV
RCC_T3--3	chr2:238449450	C	NA	31	0	31	63.968	9.874	0	0	0	31	0	MLPH	exonic	synonymous_SNV
RCC_T3--4	chr2:238449450	C	NA	42	0	42	64.452	7.487	0	0	0	42	0	MLPH	exonic	synonymous_SNV
RCC_T3--5	chr2:238449450	C	A	34	0.118	30	64.433	8.728	4	60.750	6.292	30	4	MLPH	exonic	synonymous_SNV
RCC_T3--6	chr2:238449450	C	NA	46	0	46	61.087	11.979	0	0	0	46	0	MLPH	exonic	synonymous_SNV
RCC_T3--7	chr2:238449450	C	NA	46	0	45	66.022	4.793	0	0	0	45	0	MLPH	exonic	synonymous_SNV
RCC_T3--8	chr2:238449450	C	NA	30	0	30	66.667	5.358	0	0	0	30	0	MLPH	exonic	synonymous_SNV
RCC_T3--GL	chr2:238449450	C	NA	39	0	39	64.231	6.823	0	0	0	39	0	MLPH	exonic	synonymous_SNV
RCC_T3--1	chr22:38490037	C	A	38	0.132	33	65.848	10.826	5	61.000	12.826	33	5	BAIAP2L2	intronic	NA
RCC_T3--2	chr22:38490037	C	NA	65	0	65	66.877	5.878	0	0	0	65	0	BAIAP2L2	intronic	NA
RCC_T3--3	chr22:38490037	C	NA	41	0	41	68.195	3.393	0	0	0	41	0	BAIAP2L2	intronic	NA
RCC_T3--4	chr22:38490037	C	NA	55	0	55	67.745	4.042	0	0	0	55	0	BAIAP2L2	intronic	NA
RCC_T3--5	chr22:38490037	C	NA	31	0	30	65.500	6.761	0	0	0	30	0	BAIAP2L2	intronic	NA
RCC_T3--6	chr22:38490037	C	NA	31	0	31	65.935	7.958	0	0	0	31	0	BAIAP2L2	intronic	NA
RCC_T3--7	chr22:38490037	C	NA	51	0	51	67.020	6.668	0	0	0	51	0	BAIAP2L2	intronic	NA
RCC_T3--8	chr22:38490037	C	A	36	0.028	35	65.743	6.955	1	63.000	0.000	35	1	BAIAP2L2	intronic	NA
RCC_T3--GL	chr22:38490037	C	NA	54	0	54	64.704	7.470	0	0	0	54	0	BAIAP2L2	intronic	NA
RCC_T3--1	chr2:239162263	G	NA	27	0	27	64.148	9.566	0	0	0	27	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:239162263	G	NA	44	0	44	65.977	7.125	0	0	0	44	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:239162263	G	NA	37	0	37	64.541	9.278	0	0	0	37	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:239162263	G	NA	25	0	25	67.160	3.859	0	0	0	25	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:239162263	G	A	22	0.182	18	64.944	7.944	4	67.250	6.946	18	4	PER2	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:239162263	G	NA	28	0	28	65.500	7.011	0	0	0	28	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:239162263	G	NA	36	0	36	64.361	8.177	0	0	0	36	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:239162263	G	NA	36	0	36	65.222	6.248	0	0	0	36	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:239162263	G	NA	34	0	34	60.765	10.228	0	0	0	34	0	PER2	exonic	nonsynonymous_SNV
RCC_T3--1	chr22:39499811	C	G	48	0.250	36	67.083	7.443	12	67.500	2.970	36	12	APOBEC3H	UTR3	NA
RCC_T3--2	chr22:39499811	C	G	47	0.234	36	68.056	4.491	11	70.455	2.067	36	11	APOBEC3H	UTR3	NA
RCC_T3--3	chr22:39499811	C	G	54	0.222	42	65.762	8.539	12	64.417	9.830	42	12	APOBEC3H	UTR3	NA
RCC_T3--4	chr22:39499811	C	G	45	0.289	32	68.000	3.793	13	64.462	8.006	32	13	APOBEC3H	UTR3	NA
RCC_T3--5	chr22:39499811	C	NA	37	0	37	66.919	4.639	0	0	0	37	0	APOBEC3H	UTR3	NA
RCC_T3--6	chr22:39499811	C	G	31	0.097	28	63.214	9.635	3	69.000	4.359	28	3	APOBEC3H	UTR3	NA
RCC_T3--7	chr22:39499811	C	G	56	0.268	41	66.098	7.200	15	66.400	4.763	41	15	APOBEC3H	UTR3	NA
RCC_T3--8	chr22:39499811	C	G	49	0.224	38	66.763	6.728	11	68.545	4.634	38	11	APOBEC3H	UTR3	NA
RCC_T3--GL	chr22:39499811	C	NA	57	0	57	65.702	5.519	0	0	0	57	0	APOBEC3H	UTR3	NA
RCC_T3--1	chr22:41980335	C	A	31	0.161	26	67.385	4.167	5	66.600	3.362	26	5	PMM1	exonic	nonsynonymous_SNV
RCC_T3--2	chr22:41980335	C	NA	33	0	33	66.818	5.120	0	0	0	33	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--3	chr22:41980335	C	NA	31	0	31	67.097	3.468	0	0	0	31	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--4	chr22:41980335	C	NA	46	0	46	67.261	3.630	0	0	0	46	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--5	chr22:41980335	C	NA	36	0	36	63.806	9.597	0	0	0	36	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--6	chr22:41980335	C	NA	32	0	32	65.719	4.252	0	0	0	32	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--7	chr22:41980335	C	NA	35	0	35	65.057	8.196	0	0	0	35	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--8	chr22:41980335	C	NA	34	0	34	67.294	4.232	0	0	0	34	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr22:41980335	C	NA	33	0	33	65.909	3.868	0	0	0	33	0	PMM1	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:242099869	A	NA	102	0	102	67.020	6.246	0	0	0	102	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:242099869	A	NA	104	0	104	67.692	3.674	0	0	0	104	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:242099869	A	NA	95	0	95	66.989	5.037	0	0	0	95	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:242099869	A	NA	104	0	104	67.202	4.902	0	0	0	104	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:242099869	A	NA	81	0	81	66.370	6.763	0	0	0	81	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:242099869	A	NA	107	0	107	66.523	6.384	0	0	0	107	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:242099869	A	G	92	0.250	69	66.464	6.550	23	67.435	6.345	69	23	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:242099869	A	NA	101	0	101	66.772	5.820	0	0	0	101	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:242099869	A	NA	92	0	92	68.239	3.242	0	0	0	92	0	PPP1R7	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:242381018	T	NA	45	0	45	65.844	4.977	0	0	0	45	0	FARP2	intronic	NA
RCC_T3--2	chr2:242381018	T	C	37	0.108	33	65.909	9.194	4	67.000	3.742	33	4	FARP2	intronic	NA
RCC_T3--3	chr2:242381018	T	NA	46	0	46	66.587	3.310	0	0	0	46	0	FARP2	intronic	NA
RCC_T3--4	chr2:242381018	T	NA	51	0	51	65.255	8.736	0	0	0	51	0	FARP2	intronic	NA
RCC_T3--5	chr2:242381018	T	C	52	0.019	51	66.765	3.525	1	39.000	0.000	51	1	FARP2	intronic	NA
RCC_T3--6	chr2:242381018	T	NA	65	0	65	66.508	5.582	0	0	0	65	0	FARP2	intronic	NA
RCC_T3--7	chr2:242381018	T	NA	54	0	54	65.722	5.097	0	0	0	54	0	FARP2	intronic	NA
RCC_T3--8	chr2:242381018	T	NA	54	0	54	65.852	7.293	0	0	0	54	0	FARP2	intronic	NA
RCC_T3--GL	chr2:242381018	T	NA	53	0	53	64.604	9.222	0	0	0	53	0	FARP2	intronic	NA
RCC_T3--1	chr22:42780417	G	A	25	0.160	21	64.190	5.862	4	69.750	2.062	21	4	NFAM1	UTR3	NA
RCC_T3--2	chr22:42780417	G	A	23	0.043	21	66.333	6.036	1	69.000	0.000	21	1	NFAM1	UTR3	NA
RCC_T3--3	chr22:42780417	G	NA	40	0	40	63.575	7.775	0	0	0	40	0	NFAM1	UTR3	NA
RCC_T3--4	chr22:42780417	G	A	42	0.024	41	63.317	9.294	1	72.000	0.000	41	1	NFAM1	UTR3	NA
RCC_T3--5	chr22:42780417	G	NA	34	0	33	64.394	5.402	0	0	0	33	0	NFAM1	UTR3	NA
RCC_T3--6	chr22:42780417	G	NA	34	0	34	63.382	7.381	0	0	0	34	0	NFAM1	UTR3	NA
RCC_T3--7	chr22:42780417	G	NA	25	0	25	66.200	6.096	0	0	0	25	0	NFAM1	UTR3	NA
RCC_T3--8	chr22:42780417	G	NA	47	0	47	64.426	7.165	0	0	0	47	0	NFAM1	UTR3	NA
RCC_T3--GL	chr22:42780417	G	NA	37	0	37	65.486	6.967	0	0	0	37	0	NFAM1	UTR3	NA
RCC_T3--1	chr2:24427353	C	A	32	0.188	26	66.154	3.885	6	64.000	4.940	26	6	ITSN2	intronic	NA
RCC_T3--2	chr2:24427353	C	NA	29	0	29	66.586	9.466	0	0	0	29	0	ITSN2	intronic	NA
RCC_T3--3	chr2:24427353	C	NA	33	0	33	66.091	6.085	0	0	0	33	0	ITSN2	intronic	NA
RCC_T3--4	chr2:24427353	C	NA	39	0	39	66.641	5.963	0	0	0	39	0	ITSN2	intronic	NA
RCC_T3--5	chr2:24427353	C	A	41	0.024	40	64.375	9.228	1	65.000	0.000	40	1	ITSN2	intronic	NA
RCC_T3--6	chr2:24427353	C	NA	23	0	23	66.304	4.856	0	0	0	23	0	ITSN2	intronic	NA
RCC_T3--7	chr2:24427353	C	NA	27	0	27	67.259	6.904	0	0	0	27	0	ITSN2	intronic	NA
RCC_T3--8	chr2:24427353	C	NA	30	0	30	67.033	7.223	0	0	0	30	0	ITSN2	intronic	NA
RCC_T3--GL	chr2:24427353	C	NA	39	0	39	68.154	3.910	0	0	0	39	0	ITSN2	intronic	NA
RCC_T3--1	chr2:25042829	A	NA	41	0	41	64.293	6.936	0	0	0	41	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:25042829	A	NA	37	0	37	63.865	8.230	0	0	0	37	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:25042829	A	NA	38	0	38	56.947	13.815	0	0	0	38	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:25042829	A	G	29	0.138	25	59.920	12.179	4	54.500	14.708	25	4	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:25042829	A	NA	34	0	34	62.853	10.061	0	0	0	34	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:25042829	A	NA	17	0	16	63.500	7.780	0	0	0	16	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:25042829	A	NA	37	0	37	62.351	9.123	0	0	0	37	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:25042829	A	NA	55	0	54	61.556	10.662	0	0	0	54	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:25042829	A	NA	41	0	40	60.375	11.477	0	0	0	40	0	ADCY3	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:25100787	T	NA	18	0	18	66.611	3.013	0	0	0	18	0	ADCY3	intronic	NA
RCC_T3--2	chr2:25100787	T	NA	24	0	24	64.167	8.509	0	0	0	24	0	ADCY3	intronic	NA
RCC_T3--3	chr2:25100787	T	NA	28	0	28	65.071	9.764	0	0	0	28	0	ADCY3	intronic	NA
RCC_T3--4	chr2:25100787	T	NA	34	0	34	65.765	8.610	0	0	0	34	0	ADCY3	intronic	NA
RCC_T3--5	chr2:25100787	T	C	33	0.121	29	64.552	8.078	4	72.000	0.000	29	4	ADCY3	intronic	NA
RCC_T3--6	chr2:25100787	T	NA	19	0	19	64.684	5.963	0	0	0	19	0	ADCY3	intronic	NA
RCC_T3--7	chr2:25100787	T	NA	24	0	24	64.333	7.949	0	0	0	24	0	ADCY3	intronic	NA
RCC_T3--8	chr2:25100787	T	NA	33	0	33	66.818	4.164	0	0	0	33	0	ADCY3	intronic	NA
RCC_T3--GL	chr2:25100787	T	NA	34	0	34	66.176	4.562	0	0	0	34	0	ADCY3	intronic	NA
RCC_T3--1	chr2:26502887	T	A	127	0.228	98	67.908	5.979	29	68.000	2.803	98	29	HADHB	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:26502887	T	A	164	0.274	119	66.866	6.219	45	67.733	3.387	119	45	HADHB	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:26502887	T	A	201	0.264	148	66.642	6.305	53	68.358	4.043	148	53	HADHB	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:26502887	T	A	157	0.191	127	67.331	4.857	30	68.500	3.794	127	30	HADHB	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:26502887	T	A	153	0.007	152	66.868	5.661	1	70.000	0.000	152	1	HADHB	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:26502887	T	A	138	0.181	113	66.858	6.659	25	67.280	5.358	113	25	HADHB	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:26502887	T	A	193	0.130	168	67.048	4.752	25	69.320	2.594	168	25	HADHB	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:26502887	T	A	155	0.271	113	66.442	7.334	42	67.714	4.479	113	42	HADHB	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:26502887	T	NA	195	0	195	66.656	5.461	0	0	0	195	0	HADHB	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:26589898	G	T	20	0.150	17	69.000	3.410	3	61.333	16.773	17	3	EPT1	intronic	NA
RCC_T3--2	chr2:26589898	G	NA	29	0	29	67.586	7.253	0	0	0	29	0	EPT1	intronic	NA
RCC_T3--3	chr2:26589898	G	NA	21	0	21	67.905	3.434	0	0	0	21	0	EPT1	intronic	NA
RCC_T3--4	chr2:26589898	G	NA	20	0	20	68.750	2.826	0	0	0	20	0	EPT1	intronic	NA
RCC_T3--5	chr2:26589898	G	NA	15	0	15	69.533	3.642	0	0	0	15	0	EPT1	intronic	NA
RCC_T3--6	chr2:26589898	G	NA	25	0	25	67.240	5.600	0	0	0	25	0	EPT1	intronic	NA
RCC_T3--7	chr2:26589898	G	NA	21	0	21	68.000	5.060	0	0	0	21	0	EPT1	intronic	NA
RCC_T3--8	chr2:26589898	G	NA	30	0	30	67.800	4.046	0	0	0	30	0	EPT1	intronic	NA
RCC_T3--GL	chr2:26589898	G	NA	40	0	40	68.475	3.728	0	0	0	40	0	EPT1	intronic	NA
RCC_T3--1	chr2:27306745	G	NA	22	0	22	67.182	3.911	0	0	0	22	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:27306745	G	NA	19	0	19	61.895	12.265	0	0	0	19	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:27306745	G	NA	24	0	24	66.625	3.954	0	0	0	24	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:27306745	G	NA	33	0	33	65.091	7.476	0	0	0	33	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:27306745	G	NA	12	0	12	65.250	4.808	0	0	0	12	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:27306745	G	A	20	0.150	17	65.118	4.649	3	62.667	8.083	17	3	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:27306745	G	NA	18	0	18	66.833	3.258	0	0	0	18	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:27306745	G	NA	26	0	26	64.808	8.736	0	0	0	26	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:27306745	G	NA	33	0	33	65.818	3.996	0	0	0	33	0	EMILIN1	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:27534964	G	NA	28	0	28	67.714	6.503	0	0	0	28	0	MPV17	intronic	NA
RCC_T3--2	chr2:27534964	G	NA	38	0	38	67.789	5.729	0	0	0	38	0	MPV17	intronic	NA
RCC_T3--3	chr2:27534964	G	NA	44	0	44	66.545	8.137	0	0	0	44	0	MPV17	intronic	NA
RCC_T3--4	chr2:27534964	G	NA	32	0	32	68.750	3.538	0	0	0	32	0	MPV17	intronic	NA
RCC_T3--5	chr2:27534964	G	T	36	0.111	32	68.375	3.250	4	68.500	3.109	32	4	MPV17	intronic	NA
RCC_T3--6	chr2:27534964	G	NA	38	0	38	68.184	3.384	0	0	0	38	0	MPV17	intronic	NA
RCC_T3--7	chr2:27534964	G	NA	42	0	42	67.690	4.381	0	0	0	42	0	MPV17	intronic	NA
RCC_T3--8	chr2:27534964	G	NA	30	0	30	67.967	3.567	0	0	0	30	0	MPV17	intronic	NA
RCC_T3--GL	chr2:27534964	G	NA	40	0	40	68.400	3.740	0	0	0	40	0	MPV17	intronic	NA
RCC_T3--1	chr2:29449663	T	G	21	0.048	20	59.000	8.944	1	39.000	0.000	20	1	ALK	intronic	NA
RCC_T3--2	chr2:29449663	T	G	30	0.033	29	58.759	10.689	1	39.000	0.000	29	1	ALK	intronic	NA
RCC_T3--3	chr2:29449663	T	NA	38	0	37	55.297	10.611	0	0	0	37	0	ALK	intronic	NA
RCC_T3--4	chr2:29449663	T	G	34	0.029	32	56.438	11.427	1	38.000	0.000	32	1	ALK	intronic	NA
RCC_T3--5	chr2:29449663	T	G	29	0.207	22	56.409	11.240	6	39.167	5.154	22	6	ALK	intronic	NA
RCC_T3--6	chr2:29449663	T	G	25	0.080	23	57.304	9.805	2	35.000	2.828	23	2	ALK	intronic	NA
RCC_T3--7	chr2:29449663	T	G	23	0.043	21	56.762	11.238	1	39.000	0.000	21	1	ALK	intronic	NA
RCC_T3--8	chr2:29449663	T	G	28	0.071	26	56.269	11.660	2	35.000	2.828	26	2	ALK	intronic	NA
RCC_T3--GL	chr2:29449663	T	NA	37	0	37	56.243	10.797	0	0	0	37	0	ALK	intronic	NA
RCC_T3--1	chr2:31571116	C	NA	45	0	45	67.533	5.500	0	0	0	45	0	XDH	intronic	NA
RCC_T3--2	chr2:31571116	C	NA	37	0	37	67.757	5.299	0	0	0	37	0	XDH	intronic	NA
RCC_T3--3	chr2:31571116	C	NA	49	0	49	67.490	5.447	0	0	0	49	0	XDH	intronic	NA
RCC_T3--4	chr2:31571116	C	NA	43	0	43	66.814	6.994	0	0	0	43	0	XDH	intronic	NA
RCC_T3--5	chr2:31571116	C	NA	28	0	28	66.607	6.590	0	0	0	28	0	XDH	intronic	NA
RCC_T3--6	chr2:31571116	C	NA	32	0	32	66.812	4.728	0	0	0	32	0	XDH	intronic	NA
RCC_T3--7	chr2:31571116	C	T	36	0.111	32	67.344	5.790	4	67.250	2.217	32	4	XDH	intronic	NA
RCC_T3--8	chr2:31571116	C	NA	20	0	20	66.550	3.410	0	0	0	20	0	XDH	intronic	NA
RCC_T3--GL	chr2:31571116	C	NA	38	0	38	67.447	3.689	0	0	0	38	0	XDH	intronic	NA
RCC_T3--1	chr2:3469523	G	NA	20	0	20	68.600	3.136	0	0	0	20	0	TRAPPC12	intronic	NA
RCC_T3--2	chr2:3469523	G	NA	30	0	30	68.033	7.379	0	0	0	30	0	TRAPPC12	intronic	NA
RCC_T3--3	chr2:3469523	G	NA	42	0	42	69.881	2.769	0	0	0	42	0	TRAPPC12	intronic	NA
RCC_T3--4	chr2:3469523	G	NA	34	0	34	68.971	4.160	0	0	0	34	0	TRAPPC12	intronic	NA
RCC_T3--5	chr2:3469523	G	T	29	0.138	25	66.120	9.913	4	71.750	0.500	25	4	TRAPPC12	intronic	NA
RCC_T3--6	chr2:3469523	G	NA	33	0	33	66.939	7.331	0	0	0	33	0	TRAPPC12	intronic	NA
RCC_T3--7	chr2:3469523	G	NA	33	0	33	68.212	5.378	0	0	0	33	0	TRAPPC12	intronic	NA
RCC_T3--8	chr2:3469523	G	NA	38	0	38	68.342	5.116	0	0	0	38	0	TRAPPC12	intronic	NA
RCC_T3--GL	chr2:3469523	G	NA	56	0	56	67.036	6.208	0	0	0	56	0	TRAPPC12	intronic	NA
RCC_T3--1	chr2:44078759	G	NA	39	0	39	66.897	3.575	0	0	0	39	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:44078759	G	NA	52	0	52	66.981	5.070	0	0	0	52	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:44078759	G	NA	64	0	64	66.609	6.490	0	0	0	64	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:44078759	G	A	58	0.103	52	66.154	5.717	6	66.333	4.457	52	6	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:44078759	G	NA	50	0	50	66.020	5.737	0	0	0	50	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:44078759	G	NA	51	0	51	67.078	4.381	0	0	0	51	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:44078759	G	NA	62	0	62	66.952	3.961	0	0	0	62	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:44078759	G	NA	40	0	40	65.400	7.615	0	0	0	40	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:44078759	G	NA	64	0	64	65.438	6.599	0	0	0	64	0	ABCG8	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:4562204	A	G	84	0.036	47	66.340	7.724	3	60.000	3.464	47	3	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--2	chr2:4562204	A	G	117	0.077	60	65.967	6.737	9	64.111	1.900	60	9	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--3	chr2:4562204	A	G	89	0.011	46	66.761	6.129	1	65.000	0.000	46	1	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--4	chr2:4562204	A	G	83	0.012	54	65.741	7.248	1	66.000	0.000	54	1	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--5	chr2:4562204	A	G	92	0.076	39	66.667	5.343	7	63.429	3.505	39	7	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--6	chr2:4562204	A	G	88	0.011	53	64.151	9.763	1	66.000	0.000	53	1	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--7	chr2:4562204	A	G	117	0.026	66	65.333	8.502	3	65.000	0.000	66	3	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--8	chr2:4562204	A	G	88	0.023	55	67.945	6.136	2	60.500	6.364	55	2	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--GL	chr2:4562204	A	NA	73	0	40	67.700	4.090	0	0	0	40	0	AC107070.1(dist=540582),AC022311.1(dist=113604)	intergenic	NA
RCC_T3--1	chr2:55185097	G	NA	41	0	41	66.610	5.504	0	0	0	41	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:55185097	G	NA	32	0	32	66.844	4.104	0	0	0	32	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:55185097	G	A	45	0.022	44	65.659	7.489	1	69.000	0.000	44	1	EML6	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:55185097	G	NA	49	0	49	66.939	4.155	0	0	0	49	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:55185097	G	NA	31	0	31	65.161	7.599	0	0	0	31	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:55185097	G	NA	32	0	32	63.812	9.191	0	0	0	32	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:55185097	G	A	28	0.143	24	65.125	9.683	4	67.500	2.887	24	4	EML6	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:55185097	G	NA	30	0	30	66.067	4.616	0	0	0	30	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:55185097	G	NA	36	0	36	64.694	9.001	0	0	0	36	0	EML6	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:55476476	G	NA	46	0	46	69.130	2.663	0	0	0	46	0	MTIF2	intronic	NA
RCC_T3--2	chr2:55476476	G	NA	63	0	63	67.905	3.472	0	0	0	63	0	MTIF2	intronic	NA
RCC_T3--3	chr2:55476476	G	NA	82	0	82	68.110	4.505	0	0	0	82	0	MTIF2	intronic	NA
RCC_T3--4	chr2:55476476	G	NA	63	0	63	67.492	5.474	0	0	0	63	0	MTIF2	intronic	NA
RCC_T3--5	chr2:55476476	G	A	56	0.107	50	66.520	6.683	6	67.500	2.168	50	6	MTIF2	intronic	NA
RCC_T3--6	chr2:55476476	G	NA	52	0	52	67.173	4.391	0	0	0	52	0	MTIF2	intronic	NA
RCC_T3--7	chr2:55476476	G	NA	51	0	51	67.784	4.636	0	0	0	51	0	MTIF2	intronic	NA
RCC_T3--8	chr2:55476476	G	NA	74	0	74	67.392	6.004	0	0	0	74	0	MTIF2	intronic	NA
RCC_T3--GL	chr2:55476476	G	NA	78	0	78	66.385	5.607	0	0	0	78	0	MTIF2	intronic	NA
RCC_T3--1	chr2:65604736	C	NA	30	0	30	66.000	3.742	0	0	0	30	0	SPRED2	intronic	NA
RCC_T3--2	chr2:65604736	C	NA	31	0	31	66.323	5.588	0	0	0	31	0	SPRED2	intronic	NA
RCC_T3--3	chr2:65604736	C	T	43	0.047	41	66.854	3.805	2	64.000	4.243	41	2	SPRED2	intronic	NA
RCC_T3--4	chr2:65604736	C	NA	56	0	56	67.179	4.294	0	0	0	56	0	SPRED2	intronic	NA
RCC_T3--5	chr2:65604736	C	T	33	0.121	29	66.103	4.995	4	64.750	3.594	29	4	SPRED2	intronic	NA
RCC_T3--6	chr2:65604736	C	NA	75	0	75	65.373	5.164	0	0	0	75	0	SPRED2	intronic	NA
RCC_T3--7	chr2:65604736	C	NA	36	0	36	67.333	3.928	0	0	0	36	0	SPRED2	intronic	NA
RCC_T3--8	chr2:65604736	C	NA	39	0	39	67.538	3.831	0	0	0	39	0	SPRED2	intronic	NA
RCC_T3--GL	chr2:65604736	C	NA	36	0	36	64.139	8.725	0	0	0	36	0	SPRED2	intronic	NA
RCC_T3--1	chr2:73943980	G	NA	28	0	28	67.786	4.864	0	0	0	28	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--2	chr2:73943980	G	NA	25	0	25	70.320	2.495	0	0	0	25	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--3	chr2:73943980	G	NA	25	0	25	69.360	2.691	0	0	0	25	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--4	chr2:73943980	G	NA	22	0	22	67.091	8.303	0	0	0	22	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--5	chr2:73943980	G	A	25	0.240	19	66.421	6.397	6	71.833	0.408	19	6	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--6	chr2:73943980	G	NA	24	0	24	62.750	8.099	0	0	0	24	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--7	chr2:73943980	G	NA	31	0	31	66.968	7.144	0	0	0	31	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--8	chr2:73943980	G	NA	23	0	23	68.739	3.828	0	0	0	23	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--GL	chr2:73943980	G	NA	36	0	36	66.639	6.284	0	0	0	36	0	NAT8B(dist=15513),TPRKB(dist=12977)	intergenic	NA
RCC_T3--1	chr2:80773036	T	NA	57	0	57	67.421	5.513	0	0	0	57	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:80773036	T	NA	77	0	77	67.649	4.148	0	0	0	77	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:80773036	T	NA	71	0	71	66.493	6.577	0	0	0	71	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:80773036	T	NA	62	0	62	66.661	6.148	0	0	0	62	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:80773036	T	A	59	0.102	53	64.245	6.997	6	65.000	6.812	53	6	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:80773036	T	NA	69	0	69	67.043	4.157	0	0	0	69	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:80773036	T	NA	82	0	82	65.915	6.512	0	0	0	82	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:80773036	T	NA	49	0	49	66.082	7.311	0	0	0	49	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:80773036	T	NA	65	0	65	66.800	3.788	0	0	0	65	0	CTNNA2	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:85536608	T	NA	15	0	15	65.733	8.075	0	0	0	15	0	TCF7L1	UTR3	NA
RCC_T3--2	chr2:85536608	T	NA	40	0	40	66.675	7.339	0	0	0	40	0	TCF7L1	UTR3	NA
RCC_T3--3	chr2:85536608	T	NA	30	0	30	66.333	5.326	0	0	0	30	0	TCF7L1	UTR3	NA
RCC_T3--4	chr2:85536608	T	C	38	0.026	37	67.432	3.884	1	71.000	0.000	37	1	TCF7L1	UTR3	NA
RCC_T3--5	chr2:85536608	T	NA	19	0	19	67.158	4.500	0	0	0	19	0	TCF7L1	UTR3	NA
RCC_T3--6	chr2:85536608	T	NA	23	0	23	67.652	3.996	0	0	0	23	0	TCF7L1	UTR3	NA
RCC_T3--7	chr2:85536608	T	C	33	0.121	29	67.793	3.609	4	68.750	3.202	29	4	TCF7L1	UTR3	NA
RCC_T3--8	chr2:85536608	T	NA	27	0	27	67.889	3.577	0	0	0	27	0	TCF7L1	UTR3	NA
RCC_T3--GL	chr2:85536608	T	NA	35	0	35	66.400	4.876	0	0	0	35	0	TCF7L1	UTR3	NA
RCC_T3--1	chr2:85923032	G	NA	44	0	44	65.682	6.954	0	0	0	44	0	GNLY	intronic	NA
RCC_T3--2	chr2:85923032	G	A	66	0.182	54	67.463	4.290	12	63.667	8.239	54	12	GNLY	intronic	NA
RCC_T3--3	chr2:85923032	G	NA	47	0	47	66.723	4.302	0	0	0	47	0	GNLY	intronic	NA
RCC_T3--4	chr2:85923032	G	NA	46	0	46	65.152	7.551	0	0	0	46	0	GNLY	intronic	NA
RCC_T3--5	chr2:85923032	G	NA	50	0	50	64.500	8.372	0	0	0	50	0	GNLY	intronic	NA
RCC_T3--6	chr2:85923032	G	NA	44	0	44	65.659	5.640	0	0	0	44	0	GNLY	intronic	NA
RCC_T3--7	chr2:85923032	G	NA	40	0	40	67.200	5.120	0	0	0	40	0	GNLY	intronic	NA
RCC_T3--8	chr2:85923032	G	NA	54	0	54	66.333	5.620	0	0	0	54	0	GNLY	intronic	NA
RCC_T3--GL	chr2:85923032	G	NA	57	0	57	62.825	9.732	0	0	0	57	0	GNLY	intronic	NA
RCC_T3--1	chr2:86348641	A	G	266	0.207	210	68.014	4.591	55	67.036	7.074	210	55	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--2	chr2:86348641	A	G	288	0.188	234	67.628	4.497	54	69.056	7.459	234	54	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--3	chr2:86348641	A	G	374	0.201	299	66.589	6.847	75	67.253	6.376	299	75	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--4	chr2:86348641	A	G	315	0.213	248	66.915	6.068	67	69.164	3.151	248	67	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--5	chr2:86348641	A	G	277	0.022	271	66.458	6.275	6	68.167	3.920	271	6	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--6	chr2:86348641	A	G	360	0.108	319	66.461	7.032	39	68.308	6.736	319	39	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--7	chr2:86348641	A	G	370	0.238	281	66.406	6.443	88	68.159	5.781	281	88	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--8	chr2:86348641	A	G	308	0.227	238	67.685	4.553	70	68.257	4.827	238	70	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr2:86348641	A	NA	363	0	363	66.196	5.616	0	0	0	363	0	PTCD3	exonic	nonsynonymous_SNV
RCC_T3--1	chr2:99181281	T	NA	33	0	33	67.697	6.935	0	0	0	33	0	INPP4A	intronic	NA
RCC_T3--2	chr2:99181281	T	NA	31	0	31	67.355	4.572	0	0	0	31	0	INPP4A	intronic	NA
RCC_T3--3	chr2:99181281	T	NA	47	0	47	68.000	5.782	0	0	0	47	0	INPP4A	intronic	NA
RCC_T3--4	chr2:99181281	T	NA	34	0	34	68.765	3.660	0	0	0	34	0	INPP4A	intronic	NA
RCC_T3--5	chr2:99181281	T	A	20	0.150	17	67.765	5.391	3	62.000	0.000	17	3	INPP4A	intronic	NA
RCC_T3--6	chr2:99181281	T	NA	28	0	28	67.464	5.770	0	0	0	28	0	INPP4A	intronic	NA
RCC_T3--7	chr2:99181281	T	NA	35	0	35	68.429	3.137	0	0	0	35	0	INPP4A	intronic	NA
RCC_T3--8	chr2:99181281	T	NA	35	0	35	68.800	3.685	0	0	0	35	0	INPP4A	intronic	NA
RCC_T3--GL	chr2:99181281	T	NA	44	0	44	68.795	4.386	0	0	0	44	0	INPP4A	intronic	NA
RCC_T3--1	chr3:108094487	C	A	30	0.133	26	67.731	6.010	4	66.250	3.096	26	4	HHLA2	intronic	NA
RCC_T3--2	chr3:108094487	C	NA	32	0	31	69.677	2.651	0	0	0	31	0	HHLA2	intronic	NA
RCC_T3--3	chr3:108094487	C	NA	28	0	28	66.000	7.165	0	0	0	28	0	HHLA2	intronic	NA
RCC_T3--4	chr3:108094487	C	NA	24	0	24	68.625	3.716	0	0	0	24	0	HHLA2	intronic	NA
RCC_T3--5	chr3:108094487	C	NA	22	0	22	69.000	4.117	0	0	0	22	0	HHLA2	intronic	NA
RCC_T3--6	chr3:108094487	C	NA	27	0	27	65.593	9.609	0	0	0	27	0	HHLA2	intronic	NA
RCC_T3--7	chr3:108094487	C	NA	38	0	38	68.895	3.882	0	0	0	38	0	HHLA2	intronic	NA
RCC_T3--8	chr3:108094487	C	NA	31	0	31	69.581	2.592	0	0	0	31	0	HHLA2	intronic	NA
RCC_T3--GL	chr3:108094487	C	NA	45	0	45	66.600	6.415	0	0	0	45	0	HHLA2	intronic	NA
RCC_T3--1	chr3:111888255	C	NA	36	0	36	69.250	5.838	0	0	0	36	0	SLC9C1	intronic	NA
RCC_T3--2	chr3:111888255	C	NA	38	0	38	67.658	6.771	0	0	0	38	0	SLC9C1	intronic	NA
RCC_T3--3	chr3:111888255	C	NA	35	0	35	69.629	4.023	0	0	0	35	0	SLC9C1	intronic	NA
RCC_T3--4	chr3:111888255	C	NA	45	0	45	67.578	6.713	0	0	0	45	0	SLC9C1	intronic	NA
RCC_T3--5	chr3:111888255	C	A	41	0.146	35	68.200	7.356	6	66.833	1.329	35	6	SLC9C1	intronic	NA
RCC_T3--6	chr3:111888255	C	NA	49	0	49	67.000	6.831	0	0	0	49	0	SLC9C1	intronic	NA
RCC_T3--7	chr3:111888255	C	NA	59	0	59	69.102	3.809	0	0	0	59	0	SLC9C1	intronic	NA
RCC_T3--8	chr3:111888255	C	NA	41	0	41	70.268	2.811	0	0	0	41	0	SLC9C1	intronic	NA
RCC_T3--GL	chr3:111888255	C	NA	50	0	50	67.400	5.566	0	0	0	50	0	SLC9C1	intronic	NA
RCC_T3--1	chr3:11915251	G	A	16	0.125	13	50.231	14.995	2	35.500	3.536	13	2	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--2	chr3:11915251	G	A	25	0.160	20	53.250	13.649	4	35.500	2.887	20	4	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--3	chr3:11915251	G	A	26	0.077	21	58.524	12.956	2	33.000	0.000	21	2	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--4	chr3:11915251	G	A	22	0.045	20	58.300	12.218	1	50.000	0.000	20	1	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--5	chr3:11915251	G	A	30	0.200	23	59.739	12.473	6	35.000	3.162	23	6	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--6	chr3:11915251	G	A	21	0.143	18	58.722	11.999	3	34.667	2.887	18	3	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--7	chr3:11915251	G	A	31	0.226	22	61.273	9.187	7	37.714	6.047	22	7	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--8	chr3:11915251	G	A	35	0.057	32	57.125	12.913	2	35.500	3.536	32	2	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--GL	chr3:11915251	G	NA	45	0	44	62.159	8.866	0	0	0	44	0	TAMM41(dist=26858),SYN2(dist=130611)	intergenic	NA
RCC_T3--1	chr3:11922356	C	NA	35	0	35	69.343	3.217	0	0	0	35	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--2	chr3:11922356	C	NA	33	0	33	68.788	4.174	0	0	0	33	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--3	chr3:11922356	C	NA	39	0	39	67.590	3.851	0	0	0	39	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--4	chr3:11922356	C	NA	43	0	43	69.279	6.170	0	0	0	43	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--5	chr3:11922356	C	NA	29	0	29	69.448	2.720	0	0	0	29	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--6	chr3:11922356	C	NA	28	0	28	68.536	4.811	0	0	0	28	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--7	chr3:11922356	C	NA	30	0	30	69.567	2.254	0	0	0	30	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--8	chr3:11922356	C	A	28	0.143	24	67.833	4.958	4	70.500	1.291	24	4	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--GL	chr3:11922356	C	NA	37	0	37	68.405	7.327	0	0	0	37	0	TAMM41(dist=33963),SYN2(dist=123506)	intergenic	NA
RCC_T3--1	chr3:124393398	C	NA	27	0	27	64.926	10.042	0	0	0	27	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:124393398	C	NA	30	0	30	63.333	7.945	0	0	0	30	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:124393398	C	NA	38	0	38	66.763	4.103	0	0	0	38	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:124393398	C	NA	27	0	27	67.111	3.534	0	0	0	27	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:124393398	C	NA	22	0	22	62.682	10.385	0	0	0	22	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:124393398	C	NA	29	0	29	66.759	3.481	0	0	0	29	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:124393398	C	A	22	0.182	18	66.278	3.786	4	65.750	0.500	18	4	KALRN	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:124393398	C	NA	43	0	43	66.372	3.430	0	0	0	43	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:124393398	C	NA	36	0	36	63.472	9.626	0	0	0	36	0	KALRN	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:124483324	C	NA	31	0	31	65.839	6.817	0	0	0	31	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:124483324	C	NA	36	0	36	66.278	5.589	0	0	0	36	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:124483324	C	NA	45	0	45	66.244	7.652	0	0	0	45	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:124483324	C	NA	42	0	42	66.905	5.834	0	0	0	42	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:124483324	C	A	36	0.139	31	63.806	8.931	5	54.800	10.232	31	5	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:124483324	C	NA	41	0	41	64.293	9.217	0	0	0	41	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:124483324	C	NA	36	0	36	65.889	3.725	0	0	0	36	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:124483324	C	NA	49	0	49	65.184	6.717	0	0	0	49	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:124483324	C	NA	39	0	39	63.462	7.026	0	0	0	39	0	ITGB5	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:124696813	A	G	19	0.211	15	69.600	3.582	4	63.750	2.062	15	4	HEG1	intronic	NA
RCC_T3--2	chr3:124696813	A	NA	24	0	23	66.652	5.466	0	0	0	23	0	HEG1	intronic	NA
RCC_T3--3	chr3:124696813	A	G	28	0.071	26	68.462	3.797	2	62.000	2.828	26	2	HEG1	intronic	NA
RCC_T3--4	chr3:124696813	A	G	18	0.056	17	66.059	6.768	1	57.000	0.000	17	1	HEG1	intronic	NA
RCC_T3--5	chr3:124696813	A	G	30	0.067	28	67.429	4.985	2	65.500	0.707	28	2	HEG1	intronic	NA
RCC_T3--6	chr3:124696813	A	NA	25	0	25	66.760	4.539	0	0	0	25	0	HEG1	intronic	NA
RCC_T3--7	chr3:124696813	A	NA	24	0	24	68.625	4.084	0	0	0	24	0	HEG1	intronic	NA
RCC_T3--8	chr3:124696813	A	G	27	0.037	26	68.962	3.268	1	62.000	0.000	26	1	HEG1	intronic	NA
RCC_T3--GL	chr3:124696813	A	NA	39	0	39	65.974	5.998	0	0	0	39	0	HEG1	intronic	NA
RCC_T3--1	chr3:12777161	C	NA	33	0	33	67.848	5.100	0	0	0	33	0	TMEM40	intronic	NA
RCC_T3--2	chr3:12777161	C	A	44	0.136	38	67.368	3.948	6	69.333	1.751	38	6	TMEM40	intronic	NA
RCC_T3--3	chr3:12777161	C	NA	32	0	32	68.062	4.464	0	0	0	32	0	TMEM40	intronic	NA
RCC_T3--4	chr3:12777161	C	NA	36	0	36	67.833	5.542	0	0	0	36	0	TMEM40	intronic	NA
RCC_T3--5	chr3:12777161	C	NA	36	0	36	67.917	6.258	0	0	0	36	0	TMEM40	intronic	NA
RCC_T3--6	chr3:12777161	C	NA	38	0	38	66.158	7.431	0	0	0	38	0	TMEM40	intronic	NA
RCC_T3--7	chr3:12777161	C	NA	24	0	24	67.083	5.785	0	0	0	24	0	TMEM40	intronic	NA
RCC_T3--8	chr3:12777161	C	NA	36	0	36	68.250	5.084	0	0	0	36	0	TMEM40	intronic	NA
RCC_T3--GL	chr3:12777161	C	NA	63	0	63	66.698	6.637	0	0	0	63	0	TMEM40	intronic	NA
RCC_T3--1	chr3:128982716	C	NA	24	0	24	65.875	8.609	0	0	0	24	0	COPG1	intronic	NA
RCC_T3--2	chr3:128982716	C	NA	35	0	35	67.429	4.960	0	0	0	35	0	COPG1	intronic	NA
RCC_T3--3	chr3:128982716	C	A	40	0.025	39	64.179	8.491	1	71.000	0.000	39	1	COPG1	intronic	NA
RCC_T3--4	chr3:128982716	C	NA	27	0	27	66.407	4.909	0	0	0	27	0	COPG1	intronic	NA
RCC_T3--5	chr3:128982716	C	A	30	0.167	24	64.625	8.757	5	59.200	12.558	24	5	COPG1	intronic	NA
RCC_T3--6	chr3:128982716	C	NA	24	0	24	66.042	7.099	0	0	0	24	0	COPG1	intronic	NA
RCC_T3--7	chr3:128982716	C	NA	29	0	29	64.241	7.777	0	0	0	29	0	COPG1	intronic	NA
RCC_T3--8	chr3:128982716	C	NA	32	0	32	60.938	12.163	0	0	0	32	0	COPG1	intronic	NA
RCC_T3--GL	chr3:128982716	C	NA	45	0	45	63.044	8.549	0	0	0	45	0	COPG1	intronic	NA
RCC_T3--1	chr3:12963808	C	NA	32	0	32	66.281	5.018	0	0	0	32	0	IQSEC1	intronic	NA
RCC_T3--2	chr3:12963808	C	NA	18	0	18	67.778	4.479	0	0	0	18	0	IQSEC1	intronic	NA
RCC_T3--3	chr3:12963808	C	T	32	0.125	28	64.500	9.590	4	65.750	0.500	28	4	IQSEC1	intronic	NA
RCC_T3--4	chr3:12963808	C	NA	16	0	16	60.500	11.742	0	0	0	16	0	IQSEC1	intronic	NA
RCC_T3--5	chr3:12963808	C	NA	28	0	28	67.357	3.188	0	0	0	28	0	IQSEC1	intronic	NA
RCC_T3--6	chr3:12963808	C	NA	28	0	28	64.429	6.591	0	0	0	28	0	IQSEC1	intronic	NA
RCC_T3--7	chr3:12963808	C	NA	26	0	26	66.577	5.700	0	0	0	26	0	IQSEC1	intronic	NA
RCC_T3--8	chr3:12963808	C	NA	20	0	20	65.500	5.634	0	0	0	20	0	IQSEC1	intronic	NA
RCC_T3--GL	chr3:12963808	C	NA	44	0	44	63.068	10.806	0	0	0	44	0	IQSEC1	intronic	NA
RCC_T3--1	chr3:130743322	G	A	144	0.236	110	68.573	3.638	34	67.676	3.944	110	34	ASTE1	exonic	synonymous_SNV
RCC_T3--2	chr3:130743322	G	A	119	0.218	93	68.022	5.261	26	67.808	6.651	93	26	ASTE1	exonic	synonymous_SNV
RCC_T3--3	chr3:130743322	G	A	147	0.245	111	67.360	6.293	36	66.167	7.145	111	36	ASTE1	exonic	synonymous_SNV
RCC_T3--4	chr3:130743322	G	A	156	0.173	129	68.597	3.628	27	67.630	3.982	129	27	ASTE1	exonic	synonymous_SNV
RCC_T3--5	chr3:130743322	G	A	126	0.063	118	67.042	6.512	8	67.125	3.044	118	8	ASTE1	exonic	synonymous_SNV
RCC_T3--6	chr3:130743322	G	A	137	0.175	112	66.527	6.175	24	68.292	3.329	112	24	ASTE1	exonic	synonymous_SNV
RCC_T3--7	chr3:130743322	G	A	175	0.229	135	67.104	7.836	40	65.975	7.368	135	40	ASTE1	exonic	synonymous_SNV
RCC_T3--8	chr3:130743322	G	A	160	0.231	123	67.959	5.511	37	68.459	3.633	123	37	ASTE1	exonic	synonymous_SNV
RCC_T3--GL	chr3:130743322	G	NA	178	0	178	66.865	6.421	0	0	0	178	0	ASTE1	exonic	synonymous_SNV
RCC_T3--1	chr3:132220389	G	NA	24	0	24	65.833	9.563	0	0	0	24	0	DNAJC13	intronic	NA
RCC_T3--2	chr3:132220389	G	NA	30	0	29	63.862	12.091	0	0	0	29	0	DNAJC13	intronic	NA
RCC_T3--3	chr3:132220389	G	NA	22	0	22	67.318	9.157	0	0	0	22	0	DNAJC13	intronic	NA
RCC_T3--4	chr3:132220389	G	NA	35	0	35	67.400	3.574	0	0	0	35	0	DNAJC13	intronic	NA
RCC_T3--5	chr3:132220389	G	NA	19	0	19	61.000	13.581	0	0	0	19	0	DNAJC13	intronic	NA
RCC_T3--6	chr3:132220389	G	NA	33	0	33	67.030	4.714	0	0	0	33	0	DNAJC13	intronic	NA
RCC_T3--7	chr3:132220389	G	A	41	0.171	34	64.529	10.085	7	66.286	4.716	34	7	DNAJC13	intronic	NA
RCC_T3--8	chr3:132220389	G	NA	30	0	30	61.433	14.677	0	0	0	30	0	DNAJC13	intronic	NA
RCC_T3--GL	chr3:132220389	G	NA	35	0	35	65.257	10.961	0	0	0	35	0	DNAJC13	intronic	NA
RCC_T3--1	chr3:136617978	C	NA	22	0	21	68.190	8.559	0	0	0	21	0	NCK1	intronic	NA
RCC_T3--2	chr3:136617978	C	NA	22	0	22	68.045	4.146	0	0	0	22	0	NCK1	intronic	NA
RCC_T3--3	chr3:136617978	C	NA	24	0	24	65.833	5.677	0	0	0	24	0	NCK1	intronic	NA
RCC_T3--4	chr3:136617978	C	NA	19	0	19	65.789	7.793	0	0	0	19	0	NCK1	intronic	NA
RCC_T3--5	chr3:136617978	C	NA	19	0	19	66.842	8.840	0	0	0	19	0	NCK1	intronic	NA
RCC_T3--6	chr3:136617978	C	T	16	0.188	13	64.231	9.968	3	71.333	1.155	13	3	NCK1	intronic	NA
RCC_T3--7	chr3:136617978	C	NA	24	0	24	64.583	12.423	0	0	0	24	0	NCK1	intronic	NA
RCC_T3--8	chr3:136617978	C	NA	16	0	16	64.562	12.532	0	0	0	16	0	NCK1	intronic	NA
RCC_T3--GL	chr3:136617978	C	NA	38	0	38	67.816	6.669	0	0	0	38	0	NCK1	intronic	NA
RCC_T3--1	chr3:142261635	A	NA	25	0	25	69.360	2.580	0	0	0	25	0	ATR	intronic	NA
RCC_T3--2	chr3:142261635	A	NA	48	0	48	69.354	3.014	0	0	0	48	0	ATR	intronic	NA
RCC_T3--3	chr3:142261635	A	G	33	0.121	29	66.138	8.547	4	68.750	3.775	29	4	ATR	intronic	NA
RCC_T3--4	chr3:142261635	A	NA	49	0	49	66.327	7.224	0	0	0	49	0	ATR	intronic	NA
RCC_T3--5	chr3:142261635	A	NA	28	0	28	66.393	7.325	0	0	0	28	0	ATR	intronic	NA
RCC_T3--6	chr3:142261635	A	NA	47	0	47	67.766	5.362	0	0	0	47	0	ATR	intronic	NA
RCC_T3--7	chr3:142261635	A	NA	52	0	52	67.308	4.759	0	0	0	52	0	ATR	intronic	NA
RCC_T3--8	chr3:142261635	A	NA	35	0	35	67.600	4.723	0	0	0	35	0	ATR	intronic	NA
RCC_T3--GL	chr3:142261635	A	NA	64	0	64	67.172	4.597	0	0	0	64	0	ATR	intronic	NA
RCC_T3--1	chr3:14862732	C	NA	161	0	161	64.739	7.861	0	0	0	161	0	FGD5	exonic	synonymous_SNV
RCC_T3--2	chr3:14862732	C	NA	248	0	248	65.258	7.592	0	0	0	248	0	FGD5	exonic	synonymous_SNV
RCC_T3--3	chr3:14862732	C	NA	234	0	233	65.425	7.281	0	0	0	233	0	FGD5	exonic	synonymous_SNV
RCC_T3--4	chr3:14862732	C	T	183	0.011	180	66.011	7.651	2	36.000	4.243	180	2	FGD5	exonic	synonymous_SNV
RCC_T3--5	chr3:14862732	C	NA	274	0	273	65.656	6.532	0	0	0	273	0	FGD5	exonic	synonymous_SNV
RCC_T3--6	chr3:14862732	C	NA	246	0	246	64.358	8.927	0	0	0	246	0	FGD5	exonic	synonymous_SNV
RCC_T3--7	chr3:14862732	C	T	243	0.333	161	65.006	7.804	81	64.988	7.373	161	81	FGD5	exonic	synonymous_SNV
RCC_T3--8	chr3:14862732	C	NA	235	0	235	66.081	7.114	0	0	0	235	0	FGD5	exonic	synonymous_SNV
RCC_T3--GL	chr3:14862732	C	NA	288	0	288	65.295	6.778	0	0	0	288	0	FGD5	exonic	synonymous_SNV
RCC_T3--1	chr3:158384864	C	T	95	0.168	78	69.167	3.462	16	67.562	9.640	78	16	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--2	chr3:158384864	C	T	108	0.102	97	67.814	7.154	11	68.727	2.901	97	11	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--3	chr3:158384864	C	T	123	0.325	83	69.145	4.481	40	67.525	5.711	83	40	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--4	chr3:158384864	C	T	104	0.240	79	68.405	5.601	25	67.720	4.440	79	25	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--5	chr3:158384864	C	T	97	0.021	95	68.895	3.447	2	68.500	4.950	95	2	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--6	chr3:158384864	C	T	124	0.097	112	67.545	6.374	12	65.750	9.077	112	12	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--7	chr3:158384864	C	T	99	0.273	72	69.444	3.202	27	68.815	4.095	72	27	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--8	chr3:158384864	C	T	61	0.180	50	69.180	6.130	11	68.818	3.545	50	11	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--GL	chr3:158384864	C	NA	101	0	101	69.535	2.890	0	0	0	101	0	LXN(NM_020169:exon6:c.508-1G>A)	splicing	NA
RCC_T3--1	chr3:160149968	C	NA	16	0	16	67.938	3.021	0	0	0	16	0	SMC4	intronic	NA
RCC_T3--2	chr3:160149968	C	NA	26	0	26	68.385	5.068	0	0	0	26	0	SMC4	intronic	NA
RCC_T3--3	chr3:160149968	C	NA	32	0	32	66.719	7.252	0	0	0	32	0	SMC4	intronic	NA
RCC_T3--4	chr3:160149968	C	NA	26	0	26	67.308	4.781	0	0	0	26	0	SMC4	intronic	NA
RCC_T3--5	chr3:160149968	C	NA	29	0	29	65.379	7.632	0	0	0	29	0	SMC4	intronic	NA
RCC_T3--6	chr3:160149968	C	NA	24	0	24	66.208	5.429	0	0	0	24	0	SMC4	intronic	NA
RCC_T3--7	chr3:160149968	C	NA	26	0	25	64.600	9.042	0	0	0	25	0	SMC4	intronic	NA
RCC_T3--8	chr3:160149968	C	T	27	0.148	23	68.870	3.167	4	58.750	8.617	23	4	SMC4	intronic	NA
RCC_T3--GL	chr3:160149968	C	NA	38	0	38	64.921	6.482	0	0	0	38	0	SMC4	intronic	NA
RCC_T3--1	chr3:164748674	A	T	41	0.146	35	63.543	6.326	6	58.833	11.427	35	6	SI	intronic	NA
RCC_T3--2	chr3:164748674	A	T	33	0.030	32	65.125	7.029	1	65.000	0.000	32	1	SI	intronic	NA
RCC_T3--3	chr3:164748674	A	T	63	0.016	61	66.705	3.451	1	63.000	0.000	61	1	SI	intronic	NA
RCC_T3--4	chr3:164748674	A	NA	53	0	53	66.717	3.978	0	0	0	53	0	SI	intronic	NA
RCC_T3--5	chr3:164748674	A	NA	30	0	30	66.033	3.855	0	0	0	30	0	SI	intronic	NA
RCC_T3--6	chr3:164748674	A	T	46	0.065	43	65.326	5.204	3	50.333	15.308	43	3	SI	intronic	NA
RCC_T3--7	chr3:164748674	A	T	54	0.056	51	66.020	5.353	3	52.000	12.490	51	3	SI	intronic	NA
RCC_T3--8	chr3:164748674	A	T	46	0.043	44	64.636	7.234	2	65.500	0.707	44	2	SI	intronic	NA
RCC_T3--GL	chr3:164748674	A	NA	37	0	37	66.108	4.624	0	0	0	37	0	SI	intronic	NA
RCC_T3--1	chr3:164748675	A	T	41	0.098	37	64.189	7.979	4	63.500	2.380	37	4	SI	intronic	NA
RCC_T3--2	chr3:164748675	A	T	33	0.061	31	65.484	7.075	2	62.000	0.000	31	2	SI	intronic	NA
RCC_T3--3	chr3:164748675	A	T	63	0.111	56	67.679	3.298	7	63.000	4.282	56	7	SI	intronic	NA
RCC_T3--4	chr3:164748675	A	T	53	0.170	44	67.091	3.298	9	65.556	3.245	44	9	SI	intronic	NA
RCC_T3--5	chr3:164748675	A	NA	30	0	30	66.133	3.875	0	0	0	30	0	SI	intronic	NA
RCC_T3--6	chr3:164748675	A	T	46	0.087	42	65.810	3.821	4	66.750	1.500	42	4	SI	intronic	NA
RCC_T3--7	chr3:164748675	A	T	56	0.143	48	67.229	2.628	8	65.375	4.438	48	8	SI	intronic	NA
RCC_T3--8	chr3:164748675	A	T	46	0.152	39	65.641	6.804	7	63.286	6.800	39	7	SI	intronic	NA
RCC_T3--GL	chr3:164748675	A	NA	37	0	37	66.297	3.117	0	0	0	37	0	SI	intronic	NA
RCC_T3--1	chr3:168833286	G	T	87	0.195	70	66.857	7.104	17	69.294	2.229	70	17	MECOM	exonic	synonymous_SNV
RCC_T3--2	chr3:168833286	G	T	74	0.176	60	66.167	6.730	13	69.462	2.634	60	13	MECOM	exonic	synonymous_SNV
RCC_T3--3	chr3:168833286	G	T	81	0.185	66	66.818	6.961	15	67.000	4.736	66	15	MECOM	exonic	synonymous_SNV
RCC_T3--4	chr3:168833286	G	T	72	0.319	49	66.551	6.269	23	67.435	8.371	49	23	MECOM	exonic	synonymous_SNV
RCC_T3--5	chr3:168833286	G	T	71	0.042	68	67.279	6.331	3	68.333	0.577	68	3	MECOM	exonic	synonymous_SNV
RCC_T3--6	chr3:168833286	G	T	94	0.128	81	66.432	6.317	12	66.750	10.914	81	12	MECOM	exonic	synonymous_SNV
RCC_T3--7	chr3:168833286	G	T	80	0.188	65	67.985	4.277	15	67.667	2.968	65	15	MECOM	exonic	synonymous_SNV
RCC_T3--8	chr3:168833286	G	T	102	0.167	85	66.576	5.749	17	68.118	3.276	85	17	MECOM	exonic	synonymous_SNV
RCC_T3--GL	chr3:168833286	G	NA	87	0	87	64.724	8.935	0	0	0	87	0	MECOM	exonic	synonymous_SNV
RCC_T3--1	chr3:180369066	T	NA	34	0	33	68.727	3.115	0	0	0	33	0	CCDC39	intronic	NA
RCC_T3--2	chr3:180369066	T	NA	18	0	18	69.500	3.240	0	0	0	18	0	CCDC39	intronic	NA
RCC_T3--3	chr3:180369066	T	NA	29	0	29	68.897	3.783	0	0	0	29	0	CCDC39	intronic	NA
RCC_T3--4	chr3:180369066	T	NA	19	0	19	64.105	8.333	0	0	0	19	0	CCDC39	intronic	NA
RCC_T3--5	chr3:180369066	T	NA	21	0	21	66.762	3.793	0	0	0	21	0	CCDC39	intronic	NA
RCC_T3--6	chr3:180369066	T	NA	30	0	30	69.567	2.712	0	0	0	30	0	CCDC39	intronic	NA
RCC_T3--7	chr3:180369066	T	NA	32	0	32	68.812	3.797	0	0	0	32	0	CCDC39	intronic	NA
RCC_T3--8	chr3:180369066	T	A	26	0.154	22	68.182	3.347	4	61.500	5.196	22	4	CCDC39	intronic	NA
RCC_T3--GL	chr3:180369066	T	NA	38	0	38	68.368	4.863	0	0	0	38	0	CCDC39	intronic	NA
RCC_T3--1	chr3:183772404	G	NA	13	0	13	68.615	2.434	0	0	0	13	0	HTR3C	intronic	NA
RCC_T3--2	chr3:183772404	G	NA	22	0	22	66.000	6.510	0	0	0	22	0	HTR3C	intronic	NA
RCC_T3--3	chr3:183772404	G	NA	23	0	23	65.478	7.982	0	0	0	23	0	HTR3C	intronic	NA
RCC_T3--4	chr3:183772404	G	NA	28	0	28	63.179	8.538	0	0	0	28	0	HTR3C	intronic	NA
RCC_T3--5	chr3:183772404	G	NA	19	0	19	66.947	4.766	0	0	0	19	0	HTR3C	intronic	NA
RCC_T3--6	chr3:183772404	G	A	11	0.273	8	67.250	4.652	3	64.000	1.732	8	3	HTR3C	intronic	NA
RCC_T3--7	chr3:183772404	G	NA	24	0	24	67.792	4.242	0	0	0	24	0	HTR3C	intronic	NA
RCC_T3--8	chr3:183772404	G	NA	23	0	23	66.348	8.773	0	0	0	23	0	HTR3C	intronic	NA
RCC_T3--GL	chr3:183772404	G	NA	34	0	34	68.176	4.576	0	0	0	34	0	HTR3C	intronic	NA
RCC_T3--1	chr3:183905235	A	NA	58	0	58	66.103	5.678	0	0	0	58	0	ABCF3	intronic	NA
RCC_T3--2	chr3:183905235	A	NA	63	0	63	67.333	4.912	0	0	0	63	0	ABCF3	intronic	NA
RCC_T3--3	chr3:183905235	A	NA	72	0	72	66.069	5.550	0	0	0	72	0	ABCF3	intronic	NA
RCC_T3--4	chr3:183905235	A	NA	68	0	68	67.074	5.760	0	0	0	68	0	ABCF3	intronic	NA
RCC_T3--5	chr3:183905235	A	NA	62	0	62	66.484	7.091	0	0	0	62	0	ABCF3	intronic	NA
RCC_T3--6	chr3:183905235	A	NA	87	0	85	65.412	6.351	0	0	0	85	0	ABCF3	intronic	NA
RCC_T3--7	chr3:183905235	A	NA	76	0	76	66.026	7.818	0	0	0	76	0	ABCF3	intronic	NA
RCC_T3--8	chr3:183905235	A	G	57	0.105	50	65.720	6.158	6	67.333	4.131	50	6	ABCF3	intronic	NA
RCC_T3--GL	chr3:183905235	A	NA	69	0	69	66.145	4.921	0	0	0	69	0	ABCF3	intronic	NA
RCC_T3--1	chr3:185318410	C	NA	19	0	19	68.211	5.721	0	0	0	19	0	SENP2	intronic	NA
RCC_T3--2	chr3:185318410	C	NA	34	0	34	67.353	6.198	0	0	0	34	0	SENP2	intronic	NA
RCC_T3--3	chr3:185318410	C	NA	30	0	29	67.655	6.201	0	0	0	29	0	SENP2	intronic	NA
RCC_T3--4	chr3:185318410	C	NA	30	0	30	69.033	4.165	0	0	0	30	0	SENP2	intronic	NA
RCC_T3--5	chr3:185318410	C	T	27	0.148	23	66.261	5.454	4	62.500	2.646	23	4	SENP2	intronic	NA
RCC_T3--6	chr3:185318410	C	NA	33	0	33	67.394	4.582	0	0	0	33	0	SENP2	intronic	NA
RCC_T3--7	chr3:185318410	C	NA	29	0	29	67.207	3.764	0	0	0	29	0	SENP2	intronic	NA
RCC_T3--8	chr3:185318410	C	T	35	0.029	34	66.794	7.014	1	39.000	0.000	34	1	SENP2	intronic	NA
RCC_T3--GL	chr3:185318410	C	NA	40	0	40	64.450	9.719	0	0	0	40	0	SENP2	intronic	NA
RCC_T3--1	chr3:193855889	C	A	29	0.138	25	62.920	8.794	4	54.750	7.676	25	4	HES1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:193855889	C	NA	25	0	25	62.360	10.519	0	0	0	25	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:193855889	C	NA	44	0	44	62.114	9.869	0	0	0	44	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:193855889	C	NA	30	0	30	62.433	8.016	0	0	0	30	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:193855889	C	NA	35	0	35	62.400	9.098	0	0	0	35	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:193855889	C	NA	32	0	31	63.710	6.315	0	0	0	31	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:193855889	C	NA	32	0	32	62.125	8.175	0	0	0	32	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:193855889	C	NA	14	0	14	59.143	10.939	0	0	0	14	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:193855889	C	NA	42	0	40	59.700	11.494	0	0	0	40	0	HES1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:194477028	G	NA	21	0	21	66.238	3.404	0	0	0	21	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--2	chr3:194477028	G	NA	26	0	26	64.423	5.053	0	0	0	26	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--3	chr3:194477028	G	NA	35	0	35	64.371	8.603	0	0	0	35	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--4	chr3:194477028	G	NA	29	0	29	66.276	7.176	0	0	0	29	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--5	chr3:194477028	G	T	19	0.053	18	58.778	11.983	1	69.000	0.000	18	1	AC090505.6	ncRNA_intronic	NA
RCC_T3--6	chr3:194477028	G	NA	21	0	21	62.190	8.880	0	0	0	21	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--7	chr3:194477028	G	T	25	0.160	21	63.714	11.028	4	64.750	1.258	21	4	AC090505.6	ncRNA_intronic	NA
RCC_T3--8	chr3:194477028	G	NA	28	0	28	63.714	7.272	0	0	0	28	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--GL	chr3:194477028	G	NA	35	0	34	62.882	8.766	0	0	0	34	0	AC090505.6	ncRNA_intronic	NA
RCC_T3--1	chr3:196733481	G	NA	20	0	20	64.450	7.870	0	0	0	20	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:196733481	G	NA	35	0	35	65.029	9.031	0	0	0	35	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:196733481	G	A	37	0.108	33	65.333	7.461	4	60.000	2.582	33	4	MFI2	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:196733481	G	NA	49	0	49	66.469	4.556	0	0	0	49	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:196733481	G	NA	43	0	43	64.581	7.563	0	0	0	43	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:196733481	G	NA	35	0	35	63.200	10.412	0	0	0	35	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:196733481	G	NA	22	0	22	61.591	11.987	0	0	0	22	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:196733481	G	NA	37	0	37	65.919	7.049	0	0	0	37	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:196733481	G	NA	38	0	38	63.632	9.791	0	0	0	38	0	MFI2	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:197403960	C	NA	38	0	38	67.711	4.223	0	0	0	38	0	KIAA0226	intronic	NA
RCC_T3--2	chr3:197403960	C	NA	46	0	46	66.913	6.383	0	0	0	46	0	KIAA0226	intronic	NA
RCC_T3--3	chr3:197403960	C	A	61	0.131	53	67.000	5.711	8	66.125	6.490	53	8	KIAA0226	intronic	NA
RCC_T3--4	chr3:197403960	C	NA	50	0	50	66.900	6.099	0	0	0	50	0	KIAA0226	intronic	NA
RCC_T3--5	chr3:197403960	C	NA	48	0	48	65.521	8.445	0	0	0	48	0	KIAA0226	intronic	NA
RCC_T3--6	chr3:197403960	C	NA	40	0	40	66.425	7.236	0	0	0	40	0	KIAA0226	intronic	NA
RCC_T3--7	chr3:197403960	C	A	40	0.025	39	67.487	4.192	1	65.000	0.000	39	1	KIAA0226	intronic	NA
RCC_T3--8	chr3:197403960	C	NA	65	0	65	67.000	7.372	0	0	0	65	0	KIAA0226	intronic	NA
RCC_T3--GL	chr3:197403960	C	NA	34	0	34	66.765	6.818	0	0	0	34	0	KIAA0226	intronic	NA
RCC_T3--1	chr3:197408806	C	NA	28	0	28	68.357	3.592	0	0	0	28	0	KIAA0226	intronic	NA
RCC_T3--2	chr3:197408806	C	NA	27	0	27	68.185	3.732	0	0	0	27	0	KIAA0226	intronic	NA
RCC_T3--3	chr3:197408806	C	NA	37	0	37	67.514	4.253	0	0	0	37	0	KIAA0226	intronic	NA
RCC_T3--4	chr3:197408806	C	NA	33	0	33	66.455	6.124	0	0	0	33	0	KIAA0226	intronic	NA
RCC_T3--5	chr3:197408806	C	NA	22	0	22	67.227	6.369	0	0	0	22	0	KIAA0226	intronic	NA
RCC_T3--6	chr3:197408806	C	NA	27	0	27	67.037	4.468	0	0	0	27	0	KIAA0226	intronic	NA
RCC_T3--7	chr3:197408806	C	T	26	0.154	22	65.682	8.593	4	66.000	5.888	22	4	KIAA0226	intronic	NA
RCC_T3--8	chr3:197408806	C	NA	31	0	31	67.226	7.654	0	0	0	31	0	KIAA0226	intronic	NA
RCC_T3--GL	chr3:197408806	C	NA	35	0	35	67.286	6.871	0	0	0	35	0	KIAA0226	intronic	NA
RCC_T3--1	chr3:27046821	T	NA	36	0	36	68.667	5.099	0	0	0	36	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--2	chr3:27046821	T	NA	37	0	37	68.459	4.735	0	0	0	37	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--3	chr3:27046821	T	C	29	0.138	25	65.640	4.672	4	66.750	5.500	25	4	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--4	chr3:27046821	T	NA	19	0	19	68.684	3.902	0	0	0	19	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--5	chr3:27046821	T	NA	49	0	49	68.245	3.761	0	0	0	49	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--6	chr3:27046821	T	NA	48	0	48	66.167	8.112	0	0	0	48	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--7	chr3:27046821	T	NA	34	0	34	67.882	6.019	0	0	0	34	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--8	chr3:27046821	T	NA	31	0	31	69.065	2.670	0	0	0	31	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--GL	chr3:27046821	T	NA	41	0	41	68.098	3.353	0	0	0	41	0	LRRC3B(dist=294556),NEK10(dist=210276)	intergenic	NA
RCC_T3--1	chr3:27332418	T	NA	16	0	16	67.812	8.376	0	0	0	16	0	NEK10	intronic	NA
RCC_T3--2	chr3:27332418	T	C	17	0.118	15	68.467	2.973	2	65.000	0.000	15	2	NEK10	intronic	NA
RCC_T3--3	chr3:27332418	T	NA	17	0	15	68.733	2.314	0	0	0	15	0	NEK10	intronic	NA
RCC_T3--4	chr3:27332418	T	C	17	0.176	13	66.462	6.565	3	62.000	0.000	13	3	NEK10	intronic	NA
RCC_T3--5	chr3:27332418	T	C	13	0.077	12	63.083	11.658	1	65.000	0.000	12	1	NEK10	intronic	NA
RCC_T3--6	chr3:27332418	T	C	19	0.053	18	66.778	7.796	1	62.000	0.000	18	1	NEK10	intronic	NA
RCC_T3--7	chr3:27332418	T	C	20	0.100	18	66.000	7.814	2	60.000	2.828	18	2	NEK10	intronic	NA
RCC_T3--8	chr3:27332418	T	C	21	0.095	18	63.556	11.991	2	65.000	0.000	18	2	NEK10	intronic	NA
RCC_T3--GL	chr3:27332418	T	NA	35	0	35	66.314	7.907	0	0	0	35	0	NEK10	intronic	NA
RCC_T3--1	chr3:33419519	A	NA	24	0	24	67.875	8.056	0	0	0	24	0	FBXL2	intronic	NA
RCC_T3--2	chr3:33419519	A	NA	19	0	19	65.632	8.858	0	0	0	19	0	FBXL2	intronic	NA
RCC_T3--3	chr3:33419519	A	NA	25	0	25	68.160	3.613	0	0	0	25	0	FBXL2	intronic	NA
RCC_T3--4	chr3:33419519	A	NA	24	0	24	67.958	3.483	0	0	0	24	0	FBXL2	intronic	NA
RCC_T3--5	chr3:33419519	A	NA	34	0	34	65.588	7.955	0	0	0	34	0	FBXL2	intronic	NA
RCC_T3--6	chr3:33419519	A	NA	23	0	23	63.739	10.310	0	0	0	23	0	FBXL2	intronic	NA
RCC_T3--7	chr3:33419519	A	NA	28	0	28	69.321	3.580	0	0	0	28	0	FBXL2	intronic	NA
RCC_T3--8	chr3:33419519	A	G	31	0.129	27	68.630	3.078	4	67.000	5.354	27	4	FBXL2	intronic	NA
RCC_T3--GL	chr3:33419519	A	NA	39	0	39	67.795	3.764	0	0	0	39	0	FBXL2	intronic	NA
RCC_T3--1	chr3:38052831	C	T	34	0.118	30	65.333	5.744	4	60.250	5.679	30	4	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:38052831	C	NA	51	0	51	66.608	6.191	0	0	0	51	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:38052831	C	NA	50	0	49	62.082	10.785	0	0	0	49	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:38052831	C	NA	40	0	40	62.800	10.503	0	0	0	40	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:38052831	C	NA	50	0	50	64.040	8.588	0	0	0	50	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:38052831	C	NA	49	0	49	63.469	8.641	0	0	0	49	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:38052831	C	NA	53	0	53	65.019	7.334	0	0	0	53	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:38052831	C	NA	38	0	38	63.342	10.092	0	0	0	38	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:38052831	C	NA	42	0	42	64.048	5.414	0	0	0	42	0	PLCD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:38622766	C	T	29	0.138	24	64.417	5.429	4	66.500	4.359	24	4	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:38622766	C	NA	31	0	31	65.419	5.932	0	0	0	31	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:38622766	C	NA	34	0	34	63.529	9.888	0	0	0	34	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:38622766	C	NA	29	0	29	65.862	4.823	0	0	0	29	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:38622766	C	NA	52	0	52	63.577	9.967	0	0	0	52	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:38622766	C	NA	40	0	40	65.150	5.122	0	0	0	40	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:38622766	C	T	38	0.026	36	65.917	3.358	1	63.000	0.000	36	1	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:38622766	C	NA	37	0	37	63.324	9.419	0	0	0	37	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:38622766	C	NA	59	0	59	65.847	4.338	0	0	0	59	0	SCN5A	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:38793988	C	T	33	0.121	29	66.966	4.953	4	58.250	13.500	29	4	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:38793988	C	NA	39	0	39	66.872	6.250	0	0	0	39	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:38793988	C	NA	40	0	40	64.850	9.396	0	0	0	40	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:38793988	C	NA	34	0	34	66.618	4.314	0	0	0	34	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:38793988	C	NA	59	0	59	66.458	7.709	0	0	0	59	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:38793988	C	NA	53	0	53	66.604	4.439	0	0	0	53	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:38793988	C	NA	60	0	60	64.667	7.697	0	0	0	60	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:38793988	C	NA	48	0	48	66.562	7.032	0	0	0	48	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:38793988	C	NA	45	0	44	66.818	4.627	0	0	0	44	0	SCN10A	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:39118668	T	A	118	0.280	85	68.035	6.056	33	68.121	7.861	85	33	WDR48	exonic	synonymous_SNV
RCC_T3--2	chr3:39118668	T	A	124	0.242	94	69.064	5.050	30	68.667	3.284	94	30	WDR48	exonic	synonymous_SNV
RCC_T3--3	chr3:39118668	T	A	179	0.318	122	68.115	5.881	57	67.772	5.568	122	57	WDR48	exonic	synonymous_SNV
RCC_T3--4	chr3:39118668	T	A	104	0.202	83	69.108	4.170	21	69.667	2.671	83	21	WDR48	exonic	synonymous_SNV
RCC_T3--5	chr3:39118668	T	A	132	0.038	127	68.882	3.777	5	69.600	2.881	127	5	WDR48	exonic	synonymous_SNV
RCC_T3--6	chr3:39118668	T	A	177	0.141	152	67.954	5.690	25	67.920	5.204	152	25	WDR48	exonic	synonymous_SNV
RCC_T3--7	chr3:39118668	T	A	132	0.212	104	68.779	5.839	28	68.786	3.500	104	28	WDR48	exonic	synonymous_SNV
RCC_T3--8	chr3:39118668	T	A	112	0.277	81	68.259	4.798	31	68.258	3.715	81	31	WDR48	exonic	synonymous_SNV
RCC_T3--GL	chr3:39118668	T	NA	194	0	194	66.500	7.086	0	0	0	194	0	WDR48	exonic	synonymous_SNV
RCC_T3--1	chr3:40503207	A	NA	27	0	27	69.259	2.795	0	0	0	27	0	RPL14	intronic	NA
RCC_T3--2	chr3:40503207	A	G	42	0.190	34	68.824	2.801	8	64.375	8.684	34	8	RPL14	intronic	NA
RCC_T3--3	chr3:40503207	A	NA	37	0	37	67.324	8.400	0	0	0	37	0	RPL14	intronic	NA
RCC_T3--4	chr3:40503207	A	NA	41	0	41	68.293	4.966	0	0	0	41	0	RPL14	intronic	NA
RCC_T3--5	chr3:40503207	A	NA	46	0	46	66.630	6.888	0	0	0	46	0	RPL14	intronic	NA
RCC_T3--6	chr3:40503207	A	NA	37	0	37	68.297	3.836	0	0	0	37	0	RPL14	intronic	NA
RCC_T3--7	chr3:40503207	A	NA	50	0	50	67.460	4.862	0	0	0	50	0	RPL14	intronic	NA
RCC_T3--8	chr3:40503207	A	NA	29	0	29	68.103	3.735	0	0	0	29	0	RPL14	intronic	NA
RCC_T3--GL	chr3:40503207	A	NA	41	0	41	67.024	6.471	0	0	0	41	0	RPL14	intronic	NA
RCC_T3--1	chr3:42226326	G	NA	34	0	34	55.412	12.987	0	0	0	34	0	TRAK1	intronic	NA
RCC_T3--2	chr3:42226326	G	C	41	0.049	37	54.405	12.077	2	40.500	10.607	37	2	TRAK1	intronic	NA
RCC_T3--3	chr3:42226326	G	C	37	0.108	32	52.531	13.075	4	33.750	1.500	32	4	TRAK1	intronic	NA
RCC_T3--4	chr3:42226326	G	C	44	0.045	41	55.293	12.697	2	38.000	7.071	41	2	TRAK1	intronic	NA
RCC_T3--5	chr3:42226326	G	C	38	0.105	33	54.333	11.542	4	37.000	5.657	33	4	TRAK1	intronic	NA
RCC_T3--6	chr3:42226326	G	C	48	0.125	42	54.048	13.798	6	41.333	9.352	42	6	TRAK1	intronic	NA
RCC_T3--7	chr3:42226326	G	C	44	0.136	38	52.368	11.407	6	33.500	1.225	38	6	TRAK1	intronic	NA
RCC_T3--8	chr3:42226326	G	C	38	0.184	31	52.129	14.676	7	36.714	4.716	31	7	TRAK1	intronic	NA
RCC_T3--GL	chr3:42226326	G	NA	61	0	61	53.311	12.821	0	0	0	61	0	TRAK1	intronic	NA
RCC_T3--1	chr3:43121626	C	NA	23	0	23	66.043	4.172	0	0	0	23	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:43121626	C	NA	43	0	43	67.814	4.425	0	0	0	43	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:43121626	C	T	31	0.032	30	66.667	4.634	1	70.000	0.000	30	1	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:43121626	C	NA	32	0	32	66.594	3.714	0	0	0	32	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:43121626	C	NA	50	0	50	64.920	8.710	0	0	0	50	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:43121626	C	NA	38	0	38	65.553	7.543	0	0	0	38	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:43121626	C	T	23	0.174	19	67.316	3.250	4	62.750	4.573	19	4	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:43121626	C	NA	45	0	45	64.867	8.887	0	0	0	45	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:43121626	C	NA	46	0	46	65.196	5.958	0	0	0	46	0	POMGNT2	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:44955355	C	NA	36	0	36	68.944	2.937	0	0	0	36	0	TGM4	UTR3	NA
RCC_T3--2	chr3:44955355	C	NA	47	0	47	66.851	6.531	0	0	0	47	0	TGM4	UTR3	NA
RCC_T3--3	chr3:44955355	C	NA	28	0	28	64.429	10.454	0	0	0	28	0	TGM4	UTR3	NA
RCC_T3--4	chr3:44955355	C	NA	45	0	45	66.800	6.051	0	0	0	45	0	TGM4	UTR3	NA
RCC_T3--5	chr3:44955355	C	G	42	0.024	41	66.537	5.745	1	65.000	0.000	41	1	TGM4	UTR3	NA
RCC_T3--6	chr3:44955355	C	G	43	0.256	31	63.548	9.814	11	66.455	3.725	31	11	TGM4	UTR3	NA
RCC_T3--7	chr3:44955355	C	NA	37	0	37	66.622	7.037	0	0	0	37	0	TGM4	UTR3	NA
RCC_T3--8	chr3:44955355	C	G	37	0.378	23	67.696	3.698	14	64.500	12.196	23	14	TGM4	UTR3	NA
RCC_T3--GL	chr3:44955355	C	NA	37	0	37	67.703	3.703	0	0	0	37	0	TGM4	UTR3	NA
RCC_T3--1	chr3:46000838	T	NA	45	0	44	67.023	5.773	0	0	0	44	0	FYCO1	intronic	NA
RCC_T3--2	chr3:46000838	T	C	53	0.113	47	65.404	8.118	6	64.833	3.061	47	6	FYCO1	intronic	NA
RCC_T3--3	chr3:46000838	T	NA	62	0	62	66.194	5.566	0	0	0	62	0	FYCO1	intronic	NA
RCC_T3--4	chr3:46000838	T	NA	42	0	42	67.429	3.781	0	0	0	42	0	FYCO1	intronic	NA
RCC_T3--5	chr3:46000838	T	NA	66	0	66	66.227	4.205	0	0	0	66	0	FYCO1	intronic	NA
RCC_T3--6	chr3:46000838	T	NA	57	0	57	64.526	9.042	0	0	0	57	0	FYCO1	intronic	NA
RCC_T3--7	chr3:46000838	T	NA	68	0	68	66.426	5.890	0	0	0	68	0	FYCO1	intronic	NA
RCC_T3--8	chr3:46000838	T	NA	48	0	48	66.333	6.802	0	0	0	48	0	FYCO1	intronic	NA
RCC_T3--GL	chr3:46000838	T	NA	89	0	88	64.580	7.368	0	0	0	88	0	FYCO1	intronic	NA
RCC_T3--1	chr3:46753977	G	NA	22	0	22	66.182	5.457	0	0	0	22	0	PRSS50	intronic	NA
RCC_T3--2	chr3:46753977	G	NA	23	0	23	68.043	3.925	0	0	0	23	0	PRSS50	intronic	NA
RCC_T3--3	chr3:46753977	G	NA	27	0	27	67.000	4.234	0	0	0	27	0	PRSS50	intronic	NA
RCC_T3--4	chr3:46753977	G	T	22	0.182	17	67.235	3.700	4	67.500	0.577	17	4	PRSS50	intronic	NA
RCC_T3--5	chr3:46753977	G	NA	42	0	42	62.905	11.556	0	0	0	42	0	PRSS50	intronic	NA
RCC_T3--6	chr3:46753977	G	NA	37	0	37	66.568	4.936	0	0	0	37	0	PRSS50	intronic	NA
RCC_T3--7	chr3:46753977	G	NA	24	0	24	66.875	3.675	0	0	0	24	0	PRSS50	intronic	NA
RCC_T3--8	chr3:46753977	G	NA	31	0	31	65.774	7.615	0	0	0	31	0	PRSS50	intronic	NA
RCC_T3--GL	chr3:46753977	G	NA	34	0	34	63.471	11.930	0	0	0	34	0	PRSS50	intronic	NA
RCC_T3--1	chr3:46939756	C	NA	42	0	42	66.429	8.497	0	0	0	42	0	PTH1R	intronic	NA
RCC_T3--2	chr3:46939756	C	NA	48	0	48	66.667	6.403	0	0	0	48	0	PTH1R	intronic	NA
RCC_T3--3	chr3:46939756	C	A	37	0.108	33	65.788	8.373	4	66.750	2.872	33	4	PTH1R	intronic	NA
RCC_T3--4	chr3:46939756	C	NA	42	0	42	66.905	4.658	0	0	0	42	0	PTH1R	intronic	NA
RCC_T3--5	chr3:46939756	C	NA	53	0	53	66.566	6.256	0	0	0	53	0	PTH1R	intronic	NA
RCC_T3--6	chr3:46939756	C	NA	38	0	38	65.658	6.082	0	0	0	38	0	PTH1R	intronic	NA
RCC_T3--7	chr3:46939756	C	NA	46	0	46	64.891	9.233	0	0	0	46	0	PTH1R	intronic	NA
RCC_T3--8	chr3:46939756	C	A	49	0.020	48	67.333	6.008	1	62.000	0.000	48	1	PTH1R	intronic	NA
RCC_T3--GL	chr3:46939756	C	NA	76	0	76	65.855	6.829	0	0	0	76	0	PTH1R	intronic	NA
RCC_T3--1	chr3:47453084	C	NA	33	0	33	66.909	4.376	0	0	0	33	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:47453084	C	NA	39	0	39	67.923	5.070	0	0	0	39	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:47453084	C	A	42	0.143	36	66.361	7.472	6	59.500	5.089	36	6	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:47453084	C	NA	33	0	33	66.727	3.939	0	0	0	33	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:47453084	C	NA	53	0	53	67.038	5.880	0	0	0	53	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:47453084	C	NA	57	0	57	66.842	4.847	0	0	0	57	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:47453084	C	NA	58	0	58	67.155	6.672	0	0	0	58	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:47453084	C	NA	56	0	56	66.286	8.013	0	0	0	56	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:47453084	C	NA	65	0	65	64.508	9.093	0	0	0	65	0	PTPN23	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:47467512	C	NA	42	0	42	67.595	6.533	0	0	0	42	0	SCAP	exonic	synonymous_SNV
RCC_T3--2	chr3:47467512	C	NA	55	0	55	68.127	4.037	0	0	0	55	0	SCAP	exonic	synonymous_SNV
RCC_T3--3	chr3:47467512	C	NA	46	0	46	66.370	5.631	0	0	0	46	0	SCAP	exonic	synonymous_SNV
RCC_T3--4	chr3:47467512	C	NA	37	0	37	66.784	4.263	0	0	0	37	0	SCAP	exonic	synonymous_SNV
RCC_T3--5	chr3:47467512	C	NA	39	0	39	65.846	7.088	0	0	0	39	0	SCAP	exonic	synonymous_SNV
RCC_T3--6	chr3:47467512	C	T	50	0.120	44	67.114	6.366	6	67.667	1.633	44	6	SCAP	exonic	synonymous_SNV
RCC_T3--7	chr3:47467512	C	NA	46	0	46	65.826	8.064	0	0	0	46	0	SCAP	exonic	synonymous_SNV
RCC_T3--8	chr3:47467512	C	NA	57	0	57	68.053	3.856	0	0	0	57	0	SCAP	exonic	synonymous_SNV
RCC_T3--GL	chr3:47467512	C	NA	45	0	45	67.911	3.059	0	0	0	45	0	SCAP	exonic	synonymous_SNV
RCC_T3--1	chr3:48622475	G	NA	22	0	22	65.364	4.796	0	0	0	22	0	COL7A1	exonic	synonymous_SNV
RCC_T3--2	chr3:48622475	G	NA	28	0	28	64.750	10.058	0	0	0	28	0	COL7A1	exonic	synonymous_SNV
RCC_T3--3	chr3:48622475	G	NA	34	0	34	64.206	9.220	0	0	0	34	0	COL7A1	exonic	synonymous_SNV
RCC_T3--4	chr3:48622475	G	A	22	0.182	17	66.000	4.664	4	62.500	4.509	17	4	COL7A1	exonic	synonymous_SNV
RCC_T3--5	chr3:48622475	G	NA	27	0	26	64.808	7.222	0	0	0	26	0	COL7A1	exonic	synonymous_SNV
RCC_T3--6	chr3:48622475	G	NA	29	0	29	64.621	5.192	0	0	0	29	0	COL7A1	exonic	synonymous_SNV
RCC_T3--7	chr3:48622475	G	NA	25	0	25	64.200	9.704	0	0	0	25	0	COL7A1	exonic	synonymous_SNV
RCC_T3--8	chr3:48622475	G	NA	19	0	19	65.895	5.010	0	0	0	19	0	COL7A1	exonic	synonymous_SNV
RCC_T3--GL	chr3:48622475	G	NA	37	0	37	63.946	7.608	0	0	0	37	0	COL7A1	exonic	synonymous_SNV
RCC_T3--1	chr3:48624645	C	A	23	0.174	19	65.474	8.847	4	63.000	5.944	19	4	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:48624645	C	NA	34	0	34	62.500	10.861	0	0	0	34	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:48624645	C	NA	23	0	23	65.348	7.088	0	0	0	23	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:48624645	C	NA	32	0	32	66.094	4.761	0	0	0	32	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:48624645	C	NA	25	0	25	65.160	5.169	0	0	0	25	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:48624645	C	NA	39	0	39	64.923	5.719	0	0	0	39	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:48624645	C	NA	30	0	30	63.967	7.117	0	0	0	30	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:48624645	C	NA	14	0	14	68.929	2.615	0	0	0	14	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:48624645	C	NA	36	0	36	65.500	7.201	0	0	0	36	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:48662866	C	NA	43	0	43	66.419	8.718	0	0	0	43	0	SLC26A6	downstream	NA
RCC_T3--2	chr3:48662866	C	NA	37	0	37	67.027	7.271	0	0	0	37	0	SLC26A6	downstream	NA
RCC_T3--3	chr3:48662866	C	NA	32	0	32	64.906	7.793	0	0	0	32	0	SLC26A6	downstream	NA
RCC_T3--4	chr3:48662866	C	T	34	0.176	28	65.071	5.564	6	68.000	2.898	28	6	SLC26A6	downstream	NA
RCC_T3--5	chr3:48662866	C	NA	54	0	54	65.241	7.258	0	0	0	54	0	SLC26A6	downstream	NA
RCC_T3--6	chr3:48662866	C	NA	36	0	36	66.528	6.291	0	0	0	36	0	SLC26A6	downstream	NA
RCC_T3--7	chr3:48662866	C	NA	22	0	22	64.909	8.569	0	0	0	22	0	SLC26A6	downstream	NA
RCC_T3--8	chr3:48662866	C	NA	43	0	43	65.279	6.974	0	0	0	43	0	SLC26A6	downstream	NA
RCC_T3--GL	chr3:48662866	C	NA	43	0	43	66.047	7.158	0	0	0	43	0	SLC26A6	downstream	NA
RCC_T3--1	chr3:49201620	C	NA	41	0	41	67.098	4.312	0	0	0	41	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:49201620	C	NA	48	0	48	67.917	4.196	0	0	0	48	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:49201620	C	NA	47	0	47	66.021	7.651	0	0	0	47	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:49201620	C	A	37	0.108	33	67.848	3.906	4	62.500	7.594	33	4	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:49201620	C	NA	46	0	46	66.717	4.257	0	0	0	46	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:49201620	C	NA	54	0	54	66.907	6.211	0	0	0	54	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:49201620	C	NA	44	0	44	67.477	3.054	0	0	0	44	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:49201620	C	NA	47	0	47	67.553	4.558	0	0	0	47	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:49201620	C	NA	51	0	51	66.373	5.329	0	0	0	51	0	CCDC71	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:49354642	G	NA	33	0	32	67.031	5.127	0	0	0	32	0	USP4	intronic	NA
RCC_T3--2	chr3:49354642	G	T	25	0.160	21	67.238	3.390	4	55.250	16.641	21	4	USP4	intronic	NA
RCC_T3--3	chr3:49354642	G	NA	32	0	32	65.719	7.127	0	0	0	32	0	USP4	intronic	NA
RCC_T3--4	chr3:49354642	G	NA	35	0	35	66.057	4.412	0	0	0	35	0	USP4	intronic	NA
RCC_T3--5	chr3:49354642	G	NA	61	0	61	66.393	5.880	0	0	0	61	0	USP4	intronic	NA
RCC_T3--6	chr3:49354642	G	NA	24	0	24	64.208	8.387	0	0	0	24	0	USP4	intronic	NA
RCC_T3--7	chr3:49354642	G	NA	21	0	21	64.952	9.405	0	0	0	21	0	USP4	intronic	NA
RCC_T3--8	chr3:49354642	G	NA	51	0	51	66.667	5.722	0	0	0	51	0	USP4	intronic	NA
RCC_T3--GL	chr3:49354642	G	NA	39	0	39	66.000	6.444	0	0	0	39	0	USP4	intronic	NA
RCC_T3--1	chr3:49463895	A	NA	33	0	33	64.212	6.358	0	0	0	33	0	NICN1	intronic	NA
RCC_T3--2	chr3:49463895	A	NA	33	0	33	66.485	5.333	0	0	0	33	0	NICN1	intronic	NA
RCC_T3--3	chr3:49463895	A	NA	32	0	32	65.844	3.323	0	0	0	32	0	NICN1	intronic	NA
RCC_T3--4	chr3:49463895	A	G	25	0.160	21	63.238	7.556	4	54.500	15.067	21	4	NICN1	intronic	NA
RCC_T3--5	chr3:49463895	A	NA	39	0	39	64.231	6.368	0	0	0	39	0	NICN1	intronic	NA
RCC_T3--6	chr3:49463895	A	NA	43	0	40	63.550	6.481	0	0	0	40	0	NICN1	intronic	NA
RCC_T3--7	chr3:49463895	A	NA	33	0	33	59.182	12.529	0	0	0	33	0	NICN1	intronic	NA
RCC_T3--8	chr3:49463895	A	NA	31	0	31	61.516	8.706	0	0	0	31	0	NICN1	intronic	NA
RCC_T3--GL	chr3:49463895	A	NA	61	0	61	62.164	8.122	0	0	0	61	0	NICN1	intronic	NA
RCC_T3--1	chr3:49569870	T	NA	52	0	52	65.192	7.523	0	0	0	52	0	DAG1	exonic	synonymous_SNV
RCC_T3--2	chr3:49569870	T	NA	60	0	60	67.433	5.534	0	0	0	60	0	DAG1	exonic	synonymous_SNV
RCC_T3--3	chr3:49569870	T	NA	46	0	46	66.304	7.777	0	0	0	46	0	DAG1	exonic	synonymous_SNV
RCC_T3--4	chr3:49569870	T	NA	43	0	43	66.163	4.741	0	0	0	43	0	DAG1	exonic	synonymous_SNV
RCC_T3--5	chr3:49569870	T	C	54	0.130	46	64.543	7.247	7	66.286	3.200	46	7	DAG1	exonic	synonymous_SNV
RCC_T3--6	chr3:49569870	T	NA	48	0	48	66.542	6.182	0	0	0	48	0	DAG1	exonic	synonymous_SNV
RCC_T3--7	chr3:49569870	T	NA	47	0	46	64.652	6.654	0	0	0	46	0	DAG1	exonic	synonymous_SNV
RCC_T3--8	chr3:49569870	T	NA	48	0	48	67.938	3.784	0	0	0	48	0	DAG1	exonic	synonymous_SNV
RCC_T3--GL	chr3:49569870	T	NA	76	0	76	66.447	5.265	0	0	0	76	0	DAG1	exonic	synonymous_SNV
RCC_T3--1	chr3:5021701	G	NA	57	0	57	66.404	4.832	0	0	0	57	0	BHLHE40	exonic	synonymous_SNV
RCC_T3--2	chr3:5021701	G	A	81	0.037	78	67.295	5.420	3	70.000	0.000	78	3	BHLHE40	exonic	synonymous_SNV
RCC_T3--3	chr3:5021701	G	NA	88	0	88	65.239	7.703	0	0	0	88	0	BHLHE40	exonic	synonymous_SNV
RCC_T3--4	chr3:5021701	G	NA	64	0	64	67.922	3.993	0	0	0	64	0	BHLHE40	exonic	synonymous_SNV
RCC_T3--5	chr3:5021701	G	A	73	0.082	67	65.657	10.070	6	67.333	4.590	67	6	BHLHE40	exonic	synonymous_SNV
RCC_T3--6	chr3:5021701	G	A	77	0.117	68	67.324	4.474	9	66.444	3.844	68	9	BHLHE40	exonic	synonymous_SNV
RCC_T3--7	chr3:5021701	G	NA	73	0	73	64.836	8.270	0	0	0	73	0	BHLHE40	exonic	synonymous_SNV
RCC_T3--8	chr3:5021701	G	A	69	0.188	56	66.804	5.681	13	67.923	2.929	56	13	BHLHE40	exonic	synonymous_SNV
RCC_T3--GL	chr3:5021701	G	NA	115	0	115	64.513	9.886	0	0	0	115	0	BHLHE40	exonic	synonymous_SNV
RCC_T3--1	chr3:5021703	G	NA	56	0	56	66.089	5.881	0	0	0	56	0	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:5021703	G	A	82	0.037	79	66.696	5.525	3	69.000	1.732	79	3	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:5021703	G	NA	91	0	91	64.615	7.516	0	0	0	91	0	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:5021703	G	NA	65	0	65	67.092	4.729	0	0	0	65	0	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:5021703	G	A	74	0.081	68	64.029	10.567	6	65.833	2.714	68	6	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:5021703	G	A	77	0.117	68	66.779	4.819	9	63.000	7.746	68	9	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:5021703	G	NA	73	0	73	65.233	6.840	0	0	0	73	0	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:5021703	G	A	69	0.188	56	66.661	5.912	13	66.692	3.545	56	13	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:5021703	G	NA	116	0	116	64.534	8.911	0	0	0	116	0	BHLHE40	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50330865	A	NA	22	0	22	66.318	4.099	0	0	0	22	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50330865	A	NA	25	0	25	67.480	6.488	0	0	0	25	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50330865	A	NA	30	0	30	68.367	3.102	0	0	0	30	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50330865	A	NA	23	0	23	67.870	3.167	0	0	0	23	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50330865	A	G	25	0.160	21	62.571	11.796	4	65.500	1.000	21	4	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50330865	A	NA	41	0	41	65.732	7.304	0	0	0	41	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50330865	A	NA	21	0	21	63.810	7.501	0	0	0	21	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50330865	A	NA	33	0	33	66.727	4.605	0	0	0	33	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50330865	A	NA	36	0	36	66.639	4.330	0	0	0	36	0	HYAL3	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50338182	A	NA	11	0	11	64.273	9.737	0	0	0	11	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50338182	A	NA	32	0	32	67.625	4.456	0	0	0	32	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50338182	A	NA	24	0	24	66.208	5.548	0	0	0	24	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50338182	A	NA	18	0	18	66.944	5.139	0	0	0	18	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50338182	A	G	26	0.154	22	66.773	4.937	4	67.500	1.732	22	4	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50338182	A	NA	16	0	16	65.375	4.334	0	0	0	16	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50338182	A	NA	14	0	14	67.786	5.964	0	0	0	14	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50338182	A	NA	16	0	16	68.500	6.356	0	0	0	16	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50338182	A	NA	33	0	33	67.182	3.566	0	0	0	33	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50340299	C	NA	24	0	24	66.875	5.359	0	0	0	24	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50340299	C	NA	62	0	62	63.145	8.691	0	0	0	62	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50340299	C	A	32	0.031	31	62.097	11.502	1	68.000	0.000	31	1	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50340299	C	NA	33	0	33	66.606	4.828	0	0	0	33	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50340299	C	A	71	0.113	63	63.270	9.919	8	67.125	2.900	63	8	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50340299	C	NA	45	0	45	66.978	6.144	0	0	0	45	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50340299	C	NA	45	0	45	64.444	8.802	0	0	0	45	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50340299	C	NA	59	0	59	65.966	6.754	0	0	0	59	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50340299	C	NA	59	0	58	64.552	7.500	0	0	0	58	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50357134	G	A	41	0.146	34	66.294	4.064	6	61.500	4.637	34	6	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50357134	G	NA	51	0	51	68.118	4.241	0	0	0	51	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50357134	G	NA	51	0	51	65.863	6.829	0	0	0	51	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50357134	G	NA	50	0	49	64.531	9.154	0	0	0	49	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50357134	G	NA	39	0	39	66.051	8.721	0	0	0	39	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50357134	G	NA	51	0	51	64.706	8.028	0	0	0	51	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50357134	G	NA	42	0	42	66.857	6.311	0	0	0	42	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50357134	G	NA	47	0	47	65.362	7.789	0	0	0	47	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50357134	G	NA	43	0	43	64.907	8.260	0	0	0	43	0	HYAL2	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50380355	C	NA	17	0	17	66.529	3.204	0	0	0	17	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50380355	C	NA	19	0	19	64.842	8.160	0	0	0	19	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50380355	C	NA	25	0	25	63.040	10.060	0	0	0	25	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50380355	C	T	25	0.160	21	65.190	8.072	4	62.500	3.317	21	4	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50380355	C	NA	25	0	24	62.042	11.863	0	0	0	24	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50380355	C	NA	19	0	19	64.632	8.295	0	0	0	19	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50380355	C	NA	24	0	24	65.833	7.591	0	0	0	24	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50380355	C	NA	27	0	27	66.222	4.742	0	0	0	27	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50380355	C	NA	35	0	35	65.686	5.960	0	0	0	35	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:50380553	C	NA	31	0	31	64.935	7.271	0	0	0	31	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:50380553	C	NA	42	0	42	68.000	3.845	0	0	0	42	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:50380553	C	NA	43	0	43	65.860	7.599	0	0	0	43	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:50380553	C	NA	65	0	65	66.923	5.599	0	0	0	65	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:50380553	C	A	36	0.111	32	66.594	5.701	4	70.500	1.291	32	4	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:50380553	C	NA	36	0	36	66.222	7.411	0	0	0	36	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:50380553	C	NA	41	0	41	65.488	8.183	0	0	0	41	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:50380553	C	NA	42	0	42	67.476	4.238	0	0	0	42	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:50380553	C	NA	42	0	42	62.786	9.348	0	0	0	42	0	ZMYND10	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:51680360	T	NA	24	0	24	67.375	4.499	0	0	0	24	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--2	chr3:51680360	T	NA	39	0	39	68.256	3.314	0	0	0	39	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--3	chr3:51680360	T	NA	24	0	24	67.208	3.587	0	0	0	24	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--4	chr3:51680360	T	NA	37	0	37	68.865	2.689	0	0	0	37	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--5	chr3:51680360	T	C	37	0.108	33	67.485	3.914	4	68.000	2.449	33	4	RAD54L2	exonic	synonymous_SNV
RCC_T3--6	chr3:51680360	T	NA	43	0	43	65.628	4.995	0	0	0	43	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--7	chr3:51680360	T	NA	50	0	49	68.061	2.947	0	0	0	49	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--8	chr3:51680360	T	NA	48	0	48	68.292	3.914	0	0	0	48	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--GL	chr3:51680360	T	NA	48	0	48	66.208	5.856	0	0	0	48	0	RAD54L2	exonic	synonymous_SNV
RCC_T3--1	chr3:51993892	C	NA	40	0	40	67.150	3.416	0	0	0	40	0	PCBP4	intronic	NA
RCC_T3--2	chr3:51993892	C	NA	60	0	60	66.300	5.849	0	0	0	60	0	PCBP4	intronic	NA
RCC_T3--3	chr3:51993892	C	NA	59	0	59	65.542	6.542	0	0	0	59	0	PCBP4	intronic	NA
RCC_T3--4	chr3:51993892	C	NA	64	0	64	67.172	3.714	0	0	0	64	0	PCBP4	intronic	NA
RCC_T3--5	chr3:51993892	C	NA	62	0	62	66.677	6.029	0	0	0	62	0	PCBP4	intronic	NA
RCC_T3--6	chr3:51993892	C	NA	65	0	65	65.692	5.517	0	0	0	65	0	PCBP4	intronic	NA
RCC_T3--7	chr3:51993892	C	NA	65	0	65	66.108	4.302	0	0	0	65	0	PCBP4	intronic	NA
RCC_T3--8	chr3:51993892	C	T	53	0.113	47	66.213	4.814	6	62.667	3.670	47	6	PCBP4	intronic	NA
RCC_T3--GL	chr3:51993892	C	NA	87	0	87	65.724	5.986	0	0	0	87	0	PCBP4	intronic	NA
RCC_T3--1	chr3:52543206	G	NA	29	0	29	67.138	7.539	0	0	0	29	0	STAB1	intronic	NA
RCC_T3--2	chr3:52543206	G	NA	28	0	28	66.143	4.979	0	0	0	28	0	STAB1	intronic	NA
RCC_T3--3	chr3:52543206	G	A	27	0.148	23	67.391	4.164	4	65.250	8.995	23	4	STAB1	intronic	NA
RCC_T3--4	chr3:52543206	G	NA	22	0	22	66.045	10.059	0	0	0	22	0	STAB1	intronic	NA
RCC_T3--5	chr3:52543206	G	NA	30	0	30	64.533	8.897	0	0	0	30	0	STAB1	intronic	NA
RCC_T3--6	chr3:52543206	G	A	45	0.022	44	65.841	5.468	1	42.000	0.000	44	1	STAB1	intronic	NA
RCC_T3--7	chr3:52543206	G	NA	27	0	27	64.259	9.259	0	0	0	27	0	STAB1	intronic	NA
RCC_T3--8	chr3:52543206	G	NA	19	0	19	66.895	5.744	0	0	0	19	0	STAB1	intronic	NA
RCC_T3--GL	chr3:52543206	G	NA	36	0	36	62.972	9.333	0	0	0	36	0	STAB1	intronic	NA
RCC_T3--1	chr3:52543876	C	NA	35	0	35	67.029	6.586	0	0	0	35	0	STAB1	intronic	NA
RCC_T3--2	chr3:52543876	C	NA	29	0	29	65.034	9.660	0	0	0	29	0	STAB1	intronic	NA
RCC_T3--3	chr3:52543876	C	NA	41	0	41	66.171	5.648	0	0	0	41	0	STAB1	intronic	NA
RCC_T3--4	chr3:52543876	C	NA	26	0	26	67.154	5.190	0	0	0	26	0	STAB1	intronic	NA
RCC_T3--5	chr3:52543876	C	NA	55	0	55	64.109	10.498	0	0	0	55	0	STAB1	intronic	NA
RCC_T3--6	chr3:52543876	C	NA	40	0	40	65.425	7.662	0	0	0	40	0	STAB1	intronic	NA
RCC_T3--7	chr3:52543876	C	NA	17	0	17	66.529	7.930	0	0	0	17	0	STAB1	intronic	NA
RCC_T3--8	chr3:52543876	C	A	47	0.128	41	66.634	4.705	6	64.667	2.805	41	6	STAB1	intronic	NA
RCC_T3--GL	chr3:52543876	C	NA	64	0	64	64.219	8.720	0	0	0	64	0	STAB1	intronic	NA
RCC_T3--1	chr3:52549462	C	NA	36	0	36	66.306	7.471	0	0	0	36	0	STAB1	exonic	synonymous_SNV
RCC_T3--2	chr3:52549462	C	NA	60	0	60	66.467	6.334	0	0	0	60	0	STAB1	exonic	synonymous_SNV
RCC_T3--3	chr3:52549462	C	NA	29	0	29	65.000	8.142	0	0	0	29	0	STAB1	exonic	synonymous_SNV
RCC_T3--4	chr3:52549462	C	NA	48	0	48	67.104	5.292	0	0	0	48	0	STAB1	exonic	synonymous_SNV
RCC_T3--5	chr3:52549462	C	NA	62	0	61	66.393	5.097	0	0	0	61	0	STAB1	exonic	synonymous_SNV
RCC_T3--6	chr3:52549462	C	NA	65	0	65	64.938	6.543	0	0	0	65	0	STAB1	exonic	synonymous_SNV
RCC_T3--7	chr3:52549462	C	NA	65	0	65	64.492	6.312	0	0	0	65	0	STAB1	exonic	synonymous_SNV
RCC_T3--8	chr3:52549462	C	A	35	0.114	31	67.323	3.581	4	63.750	4.500	31	4	STAB1	exonic	synonymous_SNV
RCC_T3--GL	chr3:52549462	C	NA	36	0	36	66.972	4.151	0	0	0	36	0	STAB1	exonic	synonymous_SNV
RCC_T3--1	chr3:52643360	C	A	84	0.226	65	66.385	5.960	19	67.421	7.500	65	19	PBRM1	exonic	stopgain_SNV
RCC_T3--2	chr3:52643360	C	A	106	0.208	84	67.155	5.817	22	67.682	4.122	84	22	PBRM1	exonic	stopgain_SNV
RCC_T3--3	chr3:52643360	C	A	85	0.365	54	66.037	7.748	31	65.710	10.338	54	31	PBRM1	exonic	stopgain_SNV
RCC_T3--4	chr3:52643360	C	A	119	0.303	83	68.253	4.251	36	68.472	4.171	83	36	PBRM1	exonic	stopgain_SNV
RCC_T3--5	chr3:52643360	C	A	138	0.051	131	66.748	6.026	7	69.571	2.573	131	7	PBRM1	exonic	stopgain_SNV
RCC_T3--6	chr3:52643360	C	A	126	0.111	112	65.955	8.981	14	67.929	3.407	112	14	PBRM1	exonic	stopgain_SNV
RCC_T3--7	chr3:52643360	C	A	106	0.236	81	68.840	3.426	25	66.120	8.418	81	25	PBRM1	exonic	stopgain_SNV
RCC_T3--8	chr3:52643360	C	A	96	0.260	71	68.085	4.126	25	70.240	3.004	71	25	PBRM1	exonic	stopgain_SNV
RCC_T3--GL	chr3:52643360	C	NA	162	0	162	65.735	6.597	0	0	0	162	0	PBRM1	exonic	stopgain_SNV
RCC_T3--1	chr3:52837905	A	NA	30	0	30	65.867	7.691	0	0	0	30	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:52837905	A	NA	59	0	59	64.441	8.230	0	0	0	59	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:52837905	A	NA	47	0	47	63.021	7.663	0	0	0	47	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:52837905	A	NA	30	0	30	65.833	6.023	0	0	0	30	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:52837905	A	NA	54	0	54	58.611	11.107	0	0	0	54	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:52837905	A	NA	58	0	57	60.895	8.871	0	0	0	57	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:52837905	A	G	34	0.118	30	62.433	6.867	4	63.500	5.686	30	4	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:52837905	A	NA	29	0	29	64.793	5.354	0	0	0	29	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:52837905	A	NA	35	0	35	63.743	7.213	0	0	0	35	0	ITIH3	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:53124301	C	NA	21	0	20	67.850	4.891	0	0	0	20	0	RFT1	UTR3	NA
RCC_T3--2	chr3:53124301	C	NA	34	0	34	68.294	3.090	0	0	0	34	0	RFT1	UTR3	NA
RCC_T3--3	chr3:53124301	C	NA	45	0	45	66.867	4.832	0	0	0	45	0	RFT1	UTR3	NA
RCC_T3--4	chr3:53124301	C	A	53	0.113	47	65.681	8.937	6	68.500	2.510	47	6	RFT1	UTR3	NA
RCC_T3--5	chr3:53124301	C	NA	41	0	41	67.171	4.330	0	0	0	41	0	RFT1	UTR3	NA
RCC_T3--6	chr3:53124301	C	NA	39	0	39	67.051	7.233	0	0	0	39	0	RFT1	UTR3	NA
RCC_T3--7	chr3:53124301	C	NA	30	0	30	68.100	2.670	0	0	0	30	0	RFT1	UTR3	NA
RCC_T3--8	chr3:53124301	C	NA	49	0	49	65.204	9.594	0	0	0	49	0	RFT1	UTR3	NA
RCC_T3--GL	chr3:53124301	C	NA	63	0	63	65.063	7.485	0	0	0	63	0	RFT1	UTR3	NA
RCC_T3--1	chr3:53855879	G	NA	22	0	22	68.227	4.975	0	0	0	22	0	CHDH	intronic	NA
RCC_T3--2	chr3:53855879	G	NA	15	0	15	67.667	3.773	0	0	0	15	0	CHDH	intronic	NA
RCC_T3--3	chr3:53855879	G	NA	25	0	25	67.760	3.908	0	0	0	25	0	CHDH	intronic	NA
RCC_T3--4	chr3:53855879	G	NA	29	0	29	68.621	3.343	0	0	0	29	0	CHDH	intronic	NA
RCC_T3--5	chr3:53855879	G	NA	39	0	39	66.000	6.928	0	0	0	39	0	CHDH	intronic	NA
RCC_T3--6	chr3:53855879	G	NA	27	0	27	67.333	3.453	0	0	0	27	0	CHDH	intronic	NA
RCC_T3--7	chr3:53855879	G	NA	29	0	29	65.552	9.668	0	0	0	29	0	CHDH	intronic	NA
RCC_T3--8	chr3:53855879	G	A	34	0.176	28	66.571	7.657	6	63.667	3.445	28	6	CHDH	intronic	NA
RCC_T3--GL	chr3:53855879	G	NA	50	0	50	66.860	6.194	0	0	0	50	0	CHDH	intronic	NA
RCC_T3--1	chr3:55038991	A	NA	22	0	22	53.727	11.732	0	0	0	22	0	CACNA2D3	intronic	NA
RCC_T3--2	chr3:55038991	A	T	31	0.065	28	53.107	13.331	2	38.500	0.707	28	2	CACNA2D3	intronic	NA
RCC_T3--3	chr3:55038991	A	T	31	0.065	28	60.964	10.254	2	38.000	0.000	28	2	CACNA2D3	intronic	NA
RCC_T3--4	chr3:55038991	A	T	35	0.057	31	50.935	12.741	2	35.000	2.828	31	2	CACNA2D3	intronic	NA
RCC_T3--5	chr3:55038991	A	T	29	0.207	21	56.286	11.850	6	37.333	2.251	21	6	CACNA2D3	intronic	NA
RCC_T3--6	chr3:55038991	A	T	20	0.050	19	56.158	10.787	1	37.000	0.000	19	1	CACNA2D3	intronic	NA
RCC_T3--7	chr3:55038991	A	T	33	0.152	27	55.778	12.992	5	38.400	0.894	27	5	CACNA2D3	intronic	NA
RCC_T3--8	chr3:55038991	A	T	21	0.048	19	51.421	13.259	1	33.000	0.000	19	1	CACNA2D3	intronic	NA
RCC_T3--GL	chr3:55038991	A	NA	40	0	40	54.675	12.950	0	0	0	40	0	CACNA2D3	intronic	NA
RCC_T3--1	chr3:72933400	G	NA	40	0	40	68.775	4.276	0	0	0	40	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--2	chr3:72933400	G	A	51	0.118	45	69.400	4.196	6	71.000	1.265	45	6	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--3	chr3:72933400	G	NA	63	0	63	68.825	4.831	0	0	0	63	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--4	chr3:72933400	G	NA	55	0	55	66.945	7.568	0	0	0	55	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--5	chr3:72933400	G	NA	44	0	44	68.091	4.983	0	0	0	44	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--6	chr3:72933400	G	NA	37	0	37	68.189	4.115	0	0	0	37	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--7	chr3:72933400	G	NA	54	0	54	69.722	2.624	0	0	0	54	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--8	chr3:72933400	G	NA	57	0	57	67.368	6.526	0	0	0	57	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--GL	chr3:72933400	G	NA	46	0	46	67.717	6.901	0	0	0	46	0	SHQ1(dist=35802),GXYLT2(dist=3985)	intergenic	NA
RCC_T3--1	chr3:79633582	A	NA	32	0	31	66.581	8.609	0	0	0	31	0	ROBO1	intronic	NA
RCC_T3--2	chr3:79633582	A	NA	31	0	31	69.290	3.100	0	0	0	31	0	ROBO1	intronic	NA
RCC_T3--3	chr3:79633582	A	NA	41	0	41	67.927	6.043	0	0	0	41	0	ROBO1	intronic	NA
RCC_T3--4	chr3:79633582	A	NA	39	0	39	68.846	4.030	0	0	0	39	0	ROBO1	intronic	NA
RCC_T3--5	chr3:79633582	A	T	28	0.143	24	69.125	3.518	4	63.500	1.732	24	4	ROBO1	intronic	NA
RCC_T3--6	chr3:79633582	A	NA	25	0	25	66.880	4.994	0	0	0	25	0	ROBO1	intronic	NA
RCC_T3--7	chr3:79633582	A	NA	36	0	36	68.056	3.824	0	0	0	36	0	ROBO1	intronic	NA
RCC_T3--8	chr3:79633582	A	NA	33	0	33	67.485	7.107	0	0	0	33	0	ROBO1	intronic	NA
RCC_T3--GL	chr3:79633582	A	NA	39	0	39	68.256	4.197	0	0	0	39	0	ROBO1	intronic	NA
RCC_T3--1	chr3:9799415	C	A	33	0.121	28	63.179	9.903	4	64.000	2.449	28	4	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:9799415	C	NA	32	0	32	66.062	8.104	0	0	0	32	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:9799415	C	NA	27	0	27	64.519	9.581	0	0	0	27	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:9799415	C	NA	28	0	28	66.643	4.976	0	0	0	28	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:9799415	C	NA	35	0	35	66.114	7.235	0	0	0	35	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:9799415	C	NA	40	0	40	67.150	4.918	0	0	0	40	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:9799415	C	NA	36	0	36	64.528	6.687	0	0	0	36	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:9799415	C	NA	38	0	38	67.263	6.892	0	0	0	38	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:9799415	C	NA	42	0	42	64.452	10.136	0	0	0	42	0	CAMK1	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:9804616	A	NA	46	0	46	66.022	5.725	0	0	0	46	0	CAMK1	exonic	synonymous_SNV
RCC_T3--2	chr3:9804616	A	NA	57	0	57	66.228	6.497	0	0	0	57	0	CAMK1	exonic	synonymous_SNV
RCC_T3--3	chr3:9804616	A	NA	52	0	51	65.294	7.925	0	0	0	51	0	CAMK1	exonic	synonymous_SNV
RCC_T3--4	chr3:9804616	A	T	59	0.102	53	66.925	6.330	6	64.667	1.751	53	6	CAMK1	exonic	synonymous_SNV
RCC_T3--5	chr3:9804616	A	NA	44	0	44	67.977	4.146	0	0	0	44	0	CAMK1	exonic	synonymous_SNV
RCC_T3--6	chr3:9804616	A	NA	57	0	57	64.895	10.138	0	0	0	57	0	CAMK1	exonic	synonymous_SNV
RCC_T3--7	chr3:9804616	A	NA	47	0	47	67.468	3.838	0	0	0	47	0	CAMK1	exonic	synonymous_SNV
RCC_T3--8	chr3:9804616	A	NA	48	0	48	67.562	3.695	0	0	0	48	0	CAMK1	exonic	synonymous_SNV
RCC_T3--GL	chr3:9804616	A	NA	75	0	75	63.547	8.411	0	0	0	75	0	CAMK1	exonic	synonymous_SNV
RCC_T3--1	chr3:9833139	C	NA	20	0	20	68.250	3.093	0	0	0	20	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:9833139	C	A	33	0.121	29	66.103	8.143	4	64.500	6.608	29	4	TADA3	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:9833139	C	NA	47	0	47	65.660	6.885	0	0	0	47	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:9833139	C	NA	49	0	49	68.306	4.037	0	0	0	49	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:9833139	C	NA	38	0	38	65.895	6.225	0	0	0	38	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:9833139	C	NA	38	0	38	66.421	5.310	0	0	0	38	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:9833139	C	A	37	0.027	36	65.444	8.859	1	40.000	0.000	36	1	TADA3	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:9833139	C	NA	32	0	32	67.188	3.578	0	0	0	32	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:9833139	C	NA	52	0	52	64.962	7.564	0	0	0	52	0	TADA3	exonic	nonsynonymous_SNV
RCC_T3--1	chr3:9952559	C	NA	23	0	23	65.522	7.976	0	0	0	23	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--2	chr3:9952559	C	NA	26	0	26	64.077	9.842	0	0	0	26	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--3	chr3:9952559	C	NA	37	0	37	66.486	5.383	0	0	0	37	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--4	chr3:9952559	C	NA	35	0	35	66.543	5.204	0	0	0	35	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--5	chr3:9952559	C	A	41	0.122	36	62.028	11.226	5	59.600	15.915	36	5	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--6	chr3:9952559	C	NA	28	0	28	64.786	8.517	0	0	0	28	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--7	chr3:9952559	C	NA	42	0	42	65.810	6.157	0	0	0	42	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--8	chr3:9952559	C	NA	27	0	27	65.630	9.373	0	0	0	27	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--GL	chr3:9952559	C	NA	35	0	35	63.600	7.589	0	0	0	35	0	IL17RE	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:123351012	A	NA	30	0	30	69.433	2.909	0	0	0	30	0	ADAD1	downstream	NA
RCC_T3--2	chr4:123351012	A	NA	31	0	31	67.903	4.556	0	0	0	31	0	ADAD1	downstream	NA
RCC_T3--3	chr4:123351012	A	NA	29	0	29	68.517	3.776	0	0	0	29	0	ADAD1	downstream	NA
RCC_T3--4	chr4:123351012	A	NA	37	0	37	68.459	4.531	0	0	0	37	0	ADAD1	downstream	NA
RCC_T3--5	chr4:123351012	A	G	19	0.158	16	70.438	2.065	3	62.000	2.000	16	3	ADAD1	downstream	NA
RCC_T3--6	chr4:123351012	A	NA	34	0	34	68.588	3.386	0	0	0	34	0	ADAD1	downstream	NA
RCC_T3--7	chr4:123351012	A	NA	42	0	42	69.357	2.827	0	0	0	42	0	ADAD1	downstream	NA
RCC_T3--8	chr4:123351012	A	NA	47	0	47	69.383	3.145	0	0	0	47	0	ADAD1	downstream	NA
RCC_T3--GL	chr4:123351012	A	NA	42	0	42	68.238	4.189	0	0	0	42	0	ADAD1	downstream	NA
RCC_T3--1	chr4:13610054	C	NA	51	0	51	69.784	3.579	0	0	0	51	0	BOD1L1	intronic	NA
RCC_T3--2	chr4:13610054	C	NA	83	0	83	69.398	3.481	0	0	0	83	0	BOD1L1	intronic	NA
RCC_T3--3	chr4:13610054	C	NA	81	0	81	70.074	2.583	0	0	0	81	0	BOD1L1	intronic	NA
RCC_T3--4	chr4:13610054	C	NA	89	0	89	69.629	3.728	0	0	0	89	0	BOD1L1	intronic	NA
RCC_T3--5	chr4:13610054	C	NA	57	0	57	68.263	3.843	0	0	0	57	0	BOD1L1	intronic	NA
RCC_T3--6	chr4:13610054	C	NA	89	0	89	69.034	3.315	0	0	0	89	0	BOD1L1	intronic	NA
RCC_T3--7	chr4:13610054	C	G	91	0.297	64	69.500	2.655	27	69.704	2.509	64	27	BOD1L1	intronic	NA
RCC_T3--8	chr4:13610054	C	NA	68	0	68	67.559	6.391	0	0	0	68	0	BOD1L1	intronic	NA
RCC_T3--GL	chr4:13610054	C	NA	68	0	68	69.662	2.905	0	0	0	68	0	BOD1L1	intronic	NA
RCC_T3--1	chr4:13634095	C	NA	50	0	50	66.880	4.918	0	0	0	50	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--2	chr4:13634095	C	NA	41	0	41	66.512	6.253	0	0	0	41	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--3	chr4:13634095	C	NA	51	0	51	65.314	6.677	0	0	0	51	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--4	chr4:13634095	C	NA	55	0	54	66.370	6.113	0	0	0	54	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--5	chr4:13634095	C	T	54	0.111	48	64.083	8.989	6	57.833	13.167	48	6	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--6	chr4:13634095	C	NA	49	0	49	64.857	6.840	0	0	0	49	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--7	chr4:13634095	C	NA	59	0	59	63.797	9.312	0	0	0	59	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--8	chr4:13634095	C	NA	57	0	57	67.456	5.432	0	0	0	57	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--GL	chr4:13634095	C	NA	78	0	77	64.221	8.402	0	0	0	77	0	MIR5091(dist=4514),LINC01085(dist=479497)	intergenic	NA
RCC_T3--1	chr4:146575374	G	NA	55	0	54	68.481	4.069	0	0	0	54	0	MMAA	intronic	NA
RCC_T3--2	chr4:146575374	G	T	97	0.031	94	68.574	4.089	3	69.667	3.215	94	3	MMAA	intronic	NA
RCC_T3--3	chr4:146575374	G	NA	77	0	77	68.286	5.436	0	0	0	77	0	MMAA	intronic	NA
RCC_T3--4	chr4:146575374	G	NA	82	0	82	68.378	3.974	0	0	0	82	0	MMAA	intronic	NA
RCC_T3--5	chr4:146575374	G	T	85	0.047	81	68.642	3.998	4	70.750	0.957	81	4	MMAA	intronic	NA
RCC_T3--6	chr4:146575374	G	T	78	0.051	74	67.568	4.503	4	68.000	2.944	74	4	MMAA	intronic	NA
RCC_T3--7	chr4:146575374	G	NA	107	0	107	68.075	6.216	0	0	0	107	0	MMAA	intronic	NA
RCC_T3--8	chr4:146575374	G	T	83	0.181	68	68.176	4.354	15	69.667	1.915	68	15	MMAA	intronic	NA
RCC_T3--GL	chr4:146575374	G	NA	101	0	101	67.772	4.494	0	0	0	101	0	MMAA	intronic	NA
RCC_T3--1	chr4:15706979	T	NA	24	0	24	66.500	8.768	0	0	0	24	0	BST1	intronic	NA
RCC_T3--2	chr4:15706979	T	NA	42	0	42	68.429	3.762	0	0	0	42	0	BST1	intronic	NA
RCC_T3--3	chr4:15706979	T	NA	28	0	28	67.571	5.460	0	0	0	28	0	BST1	intronic	NA
RCC_T3--4	chr4:15706979	T	NA	43	0	43	70.930	1.502	0	0	0	43	0	BST1	intronic	NA
RCC_T3--5	chr4:15706979	T	NA	35	0	35	67.314	6.953	0	0	0	35	0	BST1	intronic	NA
RCC_T3--6	chr4:15706979	T	NA	24	0	24	68.708	3.223	0	0	0	24	0	BST1	intronic	NA
RCC_T3--7	chr4:15706979	T	C	29	0.138	25	68.240	5.495	4	69.000	5.354	25	4	BST1	intronic	NA
RCC_T3--8	chr4:15706979	T	NA	29	0	29	65.034	9.089	0	0	0	29	0	BST1	intronic	NA
RCC_T3--GL	chr4:15706979	T	NA	33	0	33	67.606	4.663	0	0	0	33	0	BST1	intronic	NA
RCC_T3--1	chr4:166987125	A	G	26	0.192	21	70.048	2.765	5	67.000	3.464	21	5	TLL1	intronic	NA
RCC_T3--2	chr4:166987125	A	G	27	0.185	22	70.273	1.830	5	67.400	1.342	22	5	TLL1	intronic	NA
RCC_T3--3	chr4:166987125	A	G	19	0.158	16	68.875	3.862	3	68.667	1.155	16	3	TLL1	intronic	NA
RCC_T3--4	chr4:166987125	A	G	23	0.043	22	70.227	2.487	1	69.000	0.000	22	1	TLL1	intronic	NA
RCC_T3--5	chr4:166987125	A	G	22	0.273	16	69.312	2.272	6	65.833	2.994	16	6	TLL1	intronic	NA
RCC_T3--6	chr4:166987125	A	G	33	0.182	27	68.778	6.606	6	66.667	2.944	27	6	TLL1	intronic	NA
RCC_T3--7	chr4:166987125	A	G	28	0.143	24	70.000	2.414	4	67.500	2.887	24	4	TLL1	intronic	NA
RCC_T3--8	chr4:166987125	A	G	26	0.231	20	70.300	2.029	6	65.167	5.456	20	6	TLL1	intronic	NA
RCC_T3--GL	chr4:166987125	A	NA	34	0	34	69.794	2.333	0	0	0	34	0	TLL1	intronic	NA
RCC_T3--1	chr4:1987522	G	NA	21	0	21	62.667	10.892	0	0	0	21	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:1987522	G	NA	13	0	13	65.231	4.658	0	0	0	13	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:1987522	G	NA	41	0	41	60.439	10.731	0	0	0	41	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:1987522	G	NA	30	0	30	66.400	3.663	0	0	0	30	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:1987522	G	NA	27	0	27	65.370	6.973	0	0	0	27	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:1987522	G	A	18	0.222	14	63.929	7.322	4	52.250	14.886	14	4	NELFA	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:1987522	G	NA	24	0	24	63.542	6.580	0	0	0	24	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:1987522	G	NA	30	0	30	66.333	4.929	0	0	0	30	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:1987522	G	NA	34	0	34	60.706	11.112	0	0	0	34	0	NELFA	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:2272513	A	G	23	0.043	22	63.727	5.684	1	33.000	0.000	22	1	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:2272513	A	NA	28	0	27	62.222	6.880	0	0	0	27	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:2272513	A	NA	29	0	28	60.286	9.120	0	0	0	28	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:2272513	A	G	35	0.057	33	62.970	8.981	2	37.500	2.121	33	2	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:2272513	A	NA	30	0	29	58.931	11.042	0	0	0	29	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:2272513	A	G	20	0.200	16	61.750	9.370	4	56.750	17.289	16	4	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:2272513	A	NA	29	0	28	60.893	7.192	0	0	0	28	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:2272513	A	NA	31	0	31	61.419	7.961	0	0	0	31	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:2272513	A	NA	34	0	33	58.152	10.613	0	0	0	33	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:2343287	C	NA	51	0	51	64.235	10.487	0	0	0	51	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:2343287	C	NA	52	0	52	65.519	8.033	0	0	0	52	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:2343287	C	NA	67	0	67	65.284	7.446	0	0	0	67	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:2343287	C	T	70	0.014	69	65.246	8.001	1	64.000	0.000	69	1	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:2343287	C	NA	64	0	64	66.516	6.066	0	0	0	64	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:2343287	C	NA	74	0	74	64.649	7.873	0	0	0	74	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:2343287	C	T	61	0.148	51	66.118	4.668	9	61.444	10.138	51	9	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:2343287	C	NA	54	0	54	66.000	7.310	0	0	0	54	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:2343287	C	NA	80	0	80	63.413	8.449	0	0	0	80	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:3225355	G	NA	12	0	12	64.250	6.552	0	0	0	12	0	HTT	intronic	NA
RCC_T3--2	chr4:3225355	G	NA	18	0	18	65.944	8.908	0	0	0	18	0	HTT	intronic	NA
RCC_T3--3	chr4:3225355	G	NA	36	0	36	65.528	8.700	0	0	0	36	0	HTT	intronic	NA
RCC_T3--4	chr4:3225355	G	NA	35	0	35	65.714	7.065	0	0	0	35	0	HTT	intronic	NA
RCC_T3--5	chr4:3225355	G	NA	33	0	33	65.606	6.010	0	0	0	33	0	HTT	intronic	NA
RCC_T3--6	chr4:3225355	G	A	24	0.167	20	67.750	3.259	4	62.500	5.447	20	4	HTT	intronic	NA
RCC_T3--7	chr4:3225355	G	NA	35	0	35	66.514	4.572	0	0	0	35	0	HTT	intronic	NA
RCC_T3--8	chr4:3225355	G	A	35	0.114	31	65.323	7.436	4	67.500	2.380	31	4	HTT	intronic	NA
RCC_T3--GL	chr4:3225355	G	NA	35	0	35	65.771	6.306	0	0	0	35	0	HTT	intronic	NA
RCC_T3--1	chr4:38916813	T	NA	22	0	22	66.273	7.567	0	0	0	22	0	FAM114A1	intronic	NA
RCC_T3--2	chr4:38916813	T	NA	16	0	16	67.250	4.754	0	0	0	16	0	FAM114A1	intronic	NA
RCC_T3--3	chr4:38916813	T	NA	29	0	29	66.276	5.351	0	0	0	29	0	FAM114A1	intronic	NA
RCC_T3--4	chr4:38916813	T	A	20	0.150	17	70.353	2.668	3	65.000	0.000	17	3	FAM114A1	intronic	NA
RCC_T3--5	chr4:38916813	T	NA	23	0	23	68.174	5.202	0	0	0	23	0	FAM114A1	intronic	NA
RCC_T3--6	chr4:38916813	T	NA	21	0	21	68.381	3.248	0	0	0	21	0	FAM114A1	intronic	NA
RCC_T3--7	chr4:38916813	T	NA	35	0	35	67.429	6.199	0	0	0	35	0	FAM114A1	intronic	NA
RCC_T3--8	chr4:38916813	T	A	29	0.034	28	67.929	4.259	1	71.000	0.000	28	1	FAM114A1	intronic	NA
RCC_T3--GL	chr4:38916813	T	NA	36	0	36	67.694	4.288	0	0	0	36	0	FAM114A1	intronic	NA
RCC_T3--1	chr4:39269737	C	NA	30	0	30	67.100	3.575	0	0	0	30	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--2	chr4:39269737	C	NA	46	0	46	64.978	8.629	0	0	0	46	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--3	chr4:39269737	C	NA	54	0	54	65.537	8.028	0	0	0	54	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--4	chr4:39269737	C	NA	38	0	38	67.263	6.542	0	0	0	38	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--5	chr4:39269737	C	NA	37	0	37	63.351	10.605	0	0	0	37	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--6	chr4:39269737	C	A	34	0.118	29	65.690	7.286	4	65.750	1.258	29	4	MIR1273H	ncRNA_intronic	NA
RCC_T3--7	chr4:39269737	C	NA	50	0	49	64.490	8.940	0	0	0	49	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--8	chr4:39269737	C	NA	50	0	49	65.755	6.050	0	0	0	49	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--GL	chr4:39269737	C	NA	47	0	47	65.447	6.642	0	0	0	47	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--1	chr4:39306685	T	C	79	0.253	59	68.847	3.745	20	67.850	3.801	59	20	MIR1273H	ncRNA_intronic	NA
RCC_T3--2	chr4:39306685	T	C	94	0.266	69	68.536	6.168	25	69.800	2.614	69	25	MIR1273H	ncRNA_intronic	NA
RCC_T3--3	chr4:39306685	T	C	99	0.303	69	69.188	3.392	30	68.133	4.869	69	30	MIR1273H	ncRNA_intronic	NA
RCC_T3--4	chr4:39306685	T	C	97	0.278	70	68.471	5.447	27	67.593	4.651	70	27	MIR1273H	ncRNA_intronic	NA
RCC_T3--5	chr4:39306685	T	C	64	0.062	60	67.317	5.953	4	69.250	0.957	60	4	MIR1273H	ncRNA_intronic	NA
RCC_T3--6	chr4:39306685	T	C	79	0.165	66	68.667	3.403	13	67.308	8.645	66	13	MIR1273H	ncRNA_intronic	NA
RCC_T3--7	chr4:39306685	T	C	81	0.136	70	68.500	3.488	11	69.364	2.335	70	11	MIR1273H	ncRNA_intronic	NA
RCC_T3--8	chr4:39306685	T	C	93	0.204	74	69.095	4.068	19	69.368	3.353	74	19	MIR1273H	ncRNA_intronic	NA
RCC_T3--GL	chr4:39306685	T	NA	101	0	101	67.881	5.487	0	0	0	101	0	MIR1273H	ncRNA_intronic	NA
RCC_T3--1	chr4:49000402	T	NA	39	0	39	59.205	8.511	0	0	0	39	0	CWH43	intronic	NA
RCC_T3--2	chr4:49000402	T	G	48	0.042	46	57.935	8.486	2	41.500	6.364	46	2	CWH43	intronic	NA
RCC_T3--3	chr4:49000402	T	G	48	0.021	47	59.213	8.981	1	37.000	0.000	47	1	CWH43	intronic	NA
RCC_T3--4	chr4:49000402	T	G	31	0.065	29	60.172	7.383	2	37.500	2.121	29	2	CWH43	intronic	NA
RCC_T3--5	chr4:49000402	T	G	47	0.021	45	61.289	6.130	1	39.000	0.000	45	1	CWH43	intronic	NA
RCC_T3--6	chr4:49000402	T	G	29	0.034	27	58.852	9.063	1	45.000	0.000	27	1	CWH43	intronic	NA
RCC_T3--7	chr4:49000402	T	G	42	0.024	40	60.800	6.884	1	43.000	0.000	40	1	CWH43	intronic	NA
RCC_T3--8	chr4:49000402	T	G	36	0.167	30	59.567	8.029	6	44.500	8.019	30	6	CWH43	intronic	NA
RCC_T3--GL	chr4:49000402	T	NA	55	0	53	58.038	8.877	0	0	0	53	0	CWH43	intronic	NA
RCC_T3--1	chr4:56835369	A	NA	39	0	38	59.632	10.270	0	0	0	38	0	CEP135	intronic	NA
RCC_T3--2	chr4:56835369	A	C	36	0.167	30	57.700	8.695	6	39.333	0.816	30	6	CEP135	intronic	NA
RCC_T3--3	chr4:56835369	A	C	62	0.016	61	59.000	8.767	1	38.000	0.000	61	1	CEP135	intronic	NA
RCC_T3--4	chr4:56835369	A	C	61	0.016	60	58.433	9.432	1	38.000	0.000	60	1	CEP135	intronic	NA
RCC_T3--5	chr4:56835369	A	C	40	0.025	39	56.923	9.192	1	33.000	0.000	39	1	CEP135	intronic	NA
RCC_T3--6	chr4:56835369	A	C	44	0.023	41	54.707	11.673	1	38.000	0.000	41	1	CEP135	intronic	NA
RCC_T3--7	chr4:56835369	A	C	65	0.046	61	57.672	10.403	3	42.667	4.726	61	3	CEP135	intronic	NA
RCC_T3--8	chr4:56835369	A	C	45	0.022	43	55.186	10.992	1	33.000	0.000	43	1	CEP135	intronic	NA
RCC_T3--GL	chr4:56835369	A	NA	62	0	61	56.852	9.450	0	0	0	61	0	CEP135	intronic	NA
RCC_T3--1	chr4:57785826	C	T	17	0.059	16	67.938	4.611	1	65.000	0.000	16	1	REST	intronic	NA
RCC_T3--2	chr4:57785826	C	NA	28	0	28	67.214	9.251	0	0	0	28	0	REST	intronic	NA
RCC_T3--3	chr4:57785826	C	NA	35	0	35	68.686	3.376	0	0	0	35	0	REST	intronic	NA
RCC_T3--4	chr4:57785826	C	NA	27	0	27	67.741	5.230	0	0	0	27	0	REST	intronic	NA
RCC_T3--5	chr4:57785826	C	NA	12	0	12	68.583	3.315	0	0	0	12	0	REST	intronic	NA
RCC_T3--6	chr4:57785826	C	NA	17	0	17	67.353	4.595	0	0	0	17	0	REST	intronic	NA
RCC_T3--7	chr4:57785826	C	NA	17	0	17	67.118	9.545	0	0	0	17	0	REST	intronic	NA
RCC_T3--8	chr4:57785826	C	T	19	0.158	16	69.375	4.603	3	71.333	0.577	16	3	REST	intronic	NA
RCC_T3--GL	chr4:57785826	C	NA	44	0	44	68.659	4.861	0	0	0	44	0	REST	intronic	NA
RCC_T3--1	chr4:6615943	A	NA	25	0	25	66.520	5.471	0	0	0	25	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--2	chr4:6615943	A	NA	30	0	30	65.867	4.981	0	0	0	30	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--3	chr4:6615943	A	G	35	0.114	31	66.613	4.248	4	64.500	3.000	31	4	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--4	chr4:6615943	A	NA	34	0	34	67.118	4.066	0	0	0	34	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--5	chr4:6615943	A	NA	41	0	41	66.610	6.935	0	0	0	41	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--6	chr4:6615943	A	NA	41	0	41	66.098	6.659	0	0	0	41	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--7	chr4:6615943	A	NA	55	0	55	67.782	3.537	0	0	0	55	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--8	chr4:6615943	A	NA	41	0	41	67.415	5.775	0	0	0	41	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--GL	chr4:6615943	A	NA	47	0	47	66.766	5.861	0	0	0	47	0	MAN2B2(NM_015274:exon16:c.2564-2A>G)	splicing	NA
RCC_T3--1	chr4:6616108	G	T	24	0.167	20	65.850	5.214	4	63.750	3.304	20	4	MAN2B2	intronic	NA
RCC_T3--2	chr4:6616108	G	NA	30	0	30	60.067	11.160	0	0	0	30	0	MAN2B2	intronic	NA
RCC_T3--3	chr4:6616108	G	NA	52	0	52	63.962	7.806	0	0	0	52	0	MAN2B2	intronic	NA
RCC_T3--4	chr4:6616108	G	NA	31	0	31	63.194	7.441	0	0	0	31	0	MAN2B2	intronic	NA
RCC_T3--5	chr4:6616108	G	NA	31	0	31	61.935	11.431	0	0	0	31	0	MAN2B2	intronic	NA
RCC_T3--6	chr4:6616108	G	NA	28	0	28	60.321	9.802	0	0	0	28	0	MAN2B2	intronic	NA
RCC_T3--7	chr4:6616108	G	NA	42	0	42	62.976	9.304	0	0	0	42	0	MAN2B2	intronic	NA
RCC_T3--8	chr4:6616108	G	NA	46	0	46	63.978	6.252	0	0	0	46	0	MAN2B2	intronic	NA
RCC_T3--GL	chr4:6616108	G	NA	42	0	42	60.714	9.454	0	0	0	42	0	MAN2B2	intronic	NA
RCC_T3--1	chr4:70455148	C	T	223	0.269	163	67.859	5.073	60	68.417	4.350	163	60	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:70455148	C	T	240	0.171	199	68.090	4.792	41	68.659	3.103	199	41	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:70455148	C	T	281	0.203	223	68.036	5.032	57	68.088	4.676	223	57	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:70455148	C	T	223	0.175	184	67.837	4.148	39	67.667	5.352	184	39	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:70455148	C	T	208	0.038	200	67.705	4.808	8	69.125	3.441	200	8	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:70455148	C	T	236	0.089	215	66.874	5.093	21	66.143	8.581	215	21	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:70455148	C	T	243	0.272	177	67.723	4.961	66	67.652	5.249	177	66	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:70455148	C	T	252	0.198	202	68.218	5.015	50	68.380	4.025	202	50	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:70455148	C	NA	243	0	241	67.154	5.296	0	0	0	241	0	UGT2A1,UGT2A2	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:70462217	T	NA	18	0	18	68.722	3.340	0	0	0	18	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--2	chr4:70462217	T	NA	33	0	33	69.091	3.728	0	0	0	33	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--3	chr4:70462217	T	NA	33	0	33	68.333	4.518	0	0	0	33	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--4	chr4:70462217	T	NA	24	0	24	66.000	8.000	0	0	0	24	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--5	chr4:70462217	T	A	24	0.167	20	68.600	4.751	4	59.000	5.477	20	4	UGT2A1,UGT2A2	intronic	NA
RCC_T3--6	chr4:70462217	T	NA	21	0	21	67.905	4.073	0	0	0	21	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--7	chr4:70462217	T	NA	40	0	40	68.725	5.679	0	0	0	40	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--8	chr4:70462217	T	NA	28	0	28	70.393	2.283	0	0	0	28	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--GL	chr4:70462217	T	NA	33	0	33	67.818	3.395	0	0	0	33	0	UGT2A1,UGT2A2	intronic	NA
RCC_T3--1	chr4:74284020	G	T	85	0.200	68	68.750	4.918	17	69.706	2.365	68	17	ALB	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:74284020	G	T	102	0.147	87	69.460	2.937	15	69.467	2.031	87	15	ALB	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:74284020	G	T	130	0.223	101	69.297	3.145	29	67.690	4.019	101	29	ALB	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:74284020	G	T	120	0.158	101	68.960	3.909	19	67.579	6.458	101	19	ALB	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:74284020	G	T	109	0.046	104	68.625	3.242	5	70.000	2.121	104	5	ALB	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:74284020	G	T	113	0.124	99	68.303	5.625	14	66.429	7.910	99	14	ALB	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:74284020	G	T	94	0.309	65	68.831	3.080	29	68.034	6.967	65	29	ALB	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:74284020	G	T	74	0.257	55	67.473	5.287	19	67.053	5.441	55	19	ALB	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:74284020	G	NA	109	0	109	68.220	4.097	0	0	0	109	0	ALB	exonic	nonsynonymous_SNV
RCC_T3--1	chr4:74713669	G	NA	31	0	31	67.613	4.688	0	0	0	31	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--2	chr4:74713669	G	NA	34	0	34	67.559	4.405	0	0	0	34	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--3	chr4:74713669	G	NA	47	0	47	68.064	4.193	0	0	0	47	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--4	chr4:74713669	G	T	40	0.150	34	67.882	3.641	6	66.167	2.317	34	6	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--5	chr4:74713669	G	NA	40	0	40	67.400	4.425	0	0	0	40	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--6	chr4:74713669	G	NA	52	0	52	65.519	6.790	0	0	0	52	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--7	chr4:74713669	G	NA	50	0	50	65.920	7.392	0	0	0	50	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--8	chr4:74713669	G	NA	36	0	36	68.639	3.382	0	0	0	36	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--GL	chr4:74713669	G	NA	41	0	41	65.585	7.493	0	0	0	41	0	CXCL6(dist=9192),PF4V1(dist=5344)	intergenic	NA
RCC_T3--1	chr4:74853527	G	NA	34	0	34	68.029	3.416	0	0	0	34	0	PPBP	intronic	NA
RCC_T3--2	chr4:74853527	G	NA	51	0	51	68.098	4.797	0	0	0	51	0	PPBP	intronic	NA
RCC_T3--3	chr4:74853527	G	NA	50	0	50	68.320	4.971	0	0	0	50	0	PPBP	intronic	NA
RCC_T3--4	chr4:74853527	G	NA	47	0	47	68.106	4.093	0	0	0	47	0	PPBP	intronic	NA
RCC_T3--5	chr4:74853527	G	T	36	0.111	32	66.406	6.540	4	59.250	8.846	32	4	PPBP	intronic	NA
RCC_T3--6	chr4:74853527	G	NA	34	0	34	67.118	6.309	0	0	0	34	0	PPBP	intronic	NA
RCC_T3--7	chr4:74853527	G	NA	36	0	36	66.611	6.754	0	0	0	36	0	PPBP	intronic	NA
RCC_T3--8	chr4:74853527	G	NA	46	0	46	67.783	4.779	0	0	0	46	0	PPBP	intronic	NA
RCC_T3--GL	chr4:74853527	G	NA	47	0	47	66.979	5.265	0	0	0	47	0	PPBP	intronic	NA
RCC_T3--1	chr4:7795282	T	NA	32	0	32	67.688	4.052	0	0	0	32	0	AFAP1	intronic	NA
RCC_T3--2	chr4:7795282	T	NA	33	0	33	68.061	5.963	0	0	0	33	0	AFAP1	intronic	NA
RCC_T3--3	chr4:7795282	T	NA	27	0	27	68.481	4.318	0	0	0	27	0	AFAP1	intronic	NA
RCC_T3--4	chr4:7795282	T	A	39	0.154	33	68.273	3.582	6	67.333	4.885	33	6	AFAP1	intronic	NA
RCC_T3--5	chr4:7795282	T	NA	14	0	14	68.786	4.300	0	0	0	14	0	AFAP1	intronic	NA
RCC_T3--6	chr4:7795282	T	NA	25	0	25	67.320	4.240	0	0	0	25	0	AFAP1	intronic	NA
RCC_T3--7	chr4:7795282	T	NA	39	0	39	67.974	4.562	0	0	0	39	0	AFAP1	intronic	NA
RCC_T3--8	chr4:7795282	T	NA	33	0	33	68.121	6.813	0	0	0	33	0	AFAP1	intronic	NA
RCC_T3--GL	chr4:7795282	T	NA	38	0	38	68.368	3.955	0	0	0	38	0	AFAP1	intronic	NA
RCC_T3--1	chr4:8479857	G	NA	31	0	31	64.226	6.571	0	0	0	31	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--2	chr4:8479857	G	NA	30	0	30	66.367	7.228	0	0	0	30	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--3	chr4:8479857	G	NA	29	0	29	63.138	9.474	0	0	0	29	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--4	chr4:8479857	G	NA	44	0	43	65.860	6.346	0	0	0	43	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--5	chr4:8479857	G	NA	44	0	44	66.114	6.391	0	0	0	44	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--6	chr4:8479857	G	NA	32	0	32	66.281	4.979	0	0	0	32	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--7	chr4:8479857	G	NA	30	0	30	64.700	8.313	0	0	0	30	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--8	chr4:8479857	G	A	32	0.125	28	65.429	4.255	4	66.000	2.708	28	4	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--GL	chr4:8479857	G	NA	35	0	35	65.114	7.165	0	0	0	35	0	TRMT44(dist=1575),GPR78(dist=102360)	intergenic	NA
RCC_T3--1	chr4:87024230	G	C	36	0.028	27	65.444	9.827	1	61.000	0.000	27	1	MAPK10	intronic	NA
RCC_T3--2	chr4:87024230	G	C	43	0.023	35	69.171	3.063	1	66.000	0.000	35	1	MAPK10	intronic	NA
RCC_T3--3	chr4:87024230	G	C	54	0.037	44	68.000	4.477	2	50.500	24.749	44	2	MAPK10	intronic	NA
RCC_T3--4	chr4:87024230	G	C	39	0.128	23	67.435	8.908	5	57.000	13.454	23	5	MAPK10	intronic	NA
RCC_T3--5	chr4:87024230	G	C	38	0.079	27	67.222	7.767	3	64.667	1.155	27	3	MAPK10	intronic	NA
RCC_T3--6	chr4:87024230	G	NA	41	0	36	68.139	4.505	0	0	0	36	0	MAPK10	intronic	NA
RCC_T3--7	chr4:87024230	G	C	67	0.075	50	67.380	4.584	5	65.400	2.608	50	5	MAPK10	intronic	NA
RCC_T3--8	chr4:87024230	G	C	50	0.020	42	67.452	5.114	1	33.000	0.000	42	1	MAPK10	intronic	NA
RCC_T3--GL	chr4:87024230	G	NA	42	0	37	68.514	4.121	0	0	0	37	0	MAPK10	intronic	NA
RCC_T3--1	chr4:89571158	G	A	103	0.214	81	67.938	6.464	22	68.409	4.136	81	22	HERC3	intronic	NA
RCC_T3--2	chr4:89571158	G	A	117	0.111	104	68.212	4.812	13	66.923	6.238	104	13	HERC3	intronic	NA
RCC_T3--3	chr4:89571158	G	A	134	0.269	97	68.052	5.833	36	69.083	3.660	97	36	HERC3	intronic	NA
RCC_T3--4	chr4:89571158	G	A	95	0.379	59	67.593	6.137	36	67.667	4.209	59	36	HERC3	intronic	NA
RCC_T3--5	chr4:89571158	G	A	111	0.018	109	67.881	4.476	2	68.500	4.950	109	2	HERC3	intronic	NA
RCC_T3--6	chr4:89571158	G	A	130	0.085	119	66.958	6.281	11	67.273	4.101	119	11	HERC3	intronic	NA
RCC_T3--7	chr4:89571158	G	A	116	0.155	98	67.949	4.394	18	65.333	10.922	98	18	HERC3	intronic	NA
RCC_T3--8	chr4:89571158	G	A	98	0.163	82	69.049	3.115	16	67.875	3.704	82	16	HERC3	intronic	NA
RCC_T3--GL	chr4:89571158	G	NA	135	0	135	66.126	7.084	0	0	0	135	0	HERC3	intronic	NA
RCC_T3--1	chr4:954788	G	NA	21	0	21	63.048	9.754	0	0	0	21	0	DGKQ	intronic	NA
RCC_T3--2	chr4:954788	G	NA	31	0	31	66.000	5.404	0	0	0	31	0	DGKQ	intronic	NA
RCC_T3--3	chr4:954788	G	A	33	0.121	29	63.172	9.536	4	61.250	3.403	29	4	DGKQ	intronic	NA
RCC_T3--4	chr4:954788	G	A	20	0.050	19	64.158	8.983	1	40.000	0.000	19	1	DGKQ	intronic	NA
RCC_T3--5	chr4:954788	G	NA	25	0	25	63.240	10.465	0	0	0	25	0	DGKQ	intronic	NA
RCC_T3--6	chr4:954788	G	NA	20	0	20	62.200	8.594	0	0	0	20	0	DGKQ	intronic	NA
RCC_T3--7	chr4:954788	G	NA	20	0	20	62.350	7.782	0	0	0	20	0	DGKQ	intronic	NA
RCC_T3--8	chr4:954788	G	NA	28	0	28	58.893	13.758	0	0	0	28	0	DGKQ	intronic	NA
RCC_T3--GL	chr4:954788	G	NA	35	0	35	60.286	12.138	0	0	0	35	0	DGKQ	intronic	NA
RCC_T3--1	chr4:985299	G	NA	47	0	47	65.319	9.089	0	0	0	47	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--2	chr4:985299	G	NA	38	0	38	65.684	6.572	0	0	0	38	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--3	chr4:985299	G	NA	68	0	68	64.985	7.189	0	0	0	68	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--4	chr4:985299	G	NA	43	0	43	65.837	7.111	0	0	0	43	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--5	chr4:985299	G	NA	42	0	42	65.857	5.192	0	0	0	42	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--6	chr4:985299	G	A	49	0.122	43	63.907	7.270	6	64.500	7.287	43	6	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--7	chr4:985299	G	NA	60	0	60	66.283	5.943	0	0	0	60	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--8	chr4:985299	G	NA	59	0	59	65.271	7.611	0	0	0	59	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr4:985299	G	NA	62	0	62	65.871	7.640	0	0	0	62	0	SLC26A1	exonic	nonsynonymous_SNV
RCC_T3--1	chr5:102523204	T	NA	25	0	25	68.440	3.641	0	0	0	25	0	PPIP5K2	intronic	NA
RCC_T3--2	chr5:102523204	T	NA	24	0	24	69.083	2.603	0	0	0	24	0	PPIP5K2	intronic	NA
RCC_T3--3	chr5:102523204	T	NA	35	0	35	68.171	4.436	0	0	0	35	0	PPIP5K2	intronic	NA
RCC_T3--4	chr5:102523204	T	NA	36	0	36	68.778	2.642	0	0	0	36	0	PPIP5K2	intronic	NA
RCC_T3--5	chr5:102523204	T	NA	37	0	37	68.243	4.506	0	0	0	37	0	PPIP5K2	intronic	NA
RCC_T3--6	chr5:102523204	T	NA	21	0	21	67.524	4.445	0	0	0	21	0	PPIP5K2	intronic	NA
RCC_T3--7	chr5:102523204	T	NA	44	0	44	67.932	4.943	0	0	0	44	0	PPIP5K2	intronic	NA
RCC_T3--8	chr5:102523204	T	A	23	0.174	19	67.316	3.301	4	60.500	3.697	19	4	PPIP5K2	intronic	NA
RCC_T3--GL	chr5:102523204	T	NA	45	0	45	68.444	3.853	0	0	0	45	0	PPIP5K2	intronic	NA
RCC_T3--1	chr5:10391879	T	NA	29	0	29	66.138	8.323	0	0	0	29	0	MARCH6	intronic	NA
RCC_T3--2	chr5:10391879	T	NA	38	0	38	66.342	5.781	0	0	0	38	0	MARCH6	intronic	NA
RCC_T3--3	chr5:10391879	T	NA	41	0	41	66.585	6.730	0	0	0	41	0	MARCH6	intronic	NA
RCC_T3--4	chr5:10391879	T	NA	31	0	31	66.968	7.670	0	0	0	31	0	MARCH6	intronic	NA
RCC_T3--5	chr5:10391879	T	NA	19	0	19	65.947	5.317	0	0	0	19	0	MARCH6	intronic	NA
RCC_T3--6	chr5:10391879	T	NA	29	0	29	66.069	5.682	0	0	0	29	0	MARCH6	intronic	NA
RCC_T3--7	chr5:10391879	T	C	34	0.118	30	67.467	3.919	4	66.500	2.517	30	4	MARCH6	intronic	NA
RCC_T3--8	chr5:10391879	T	NA	42	0	42	66.762	5.847	0	0	0	42	0	MARCH6	intronic	NA
RCC_T3--GL	chr5:10391879	T	NA	33	0	33	67.515	4.338	0	0	0	33	0	MARCH6	intronic	NA
RCC_T3--1	chr5:126507748	G	T	29	0.138	25	68.200	5.515	4	63.250	2.363	25	4	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--2	chr5:126507748	G	NA	44	0	44	67.841	4.570	0	0	0	44	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--3	chr5:126507748	G	NA	62	0	62	67.823	5.452	0	0	0	62	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--4	chr5:126507748	G	NA	49	0	49	68.980	3.295	0	0	0	49	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--5	chr5:126507748	G	NA	33	0	33	66.030	7.368	0	0	0	33	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--6	chr5:126507748	G	NA	47	0	47	67.702	4.185	0	0	0	47	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--7	chr5:126507748	G	NA	48	0	48	68.500	5.161	0	0	0	48	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--8	chr5:126507748	G	NA	44	0	44	68.523	3.738	0	0	0	44	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--GL	chr5:126507748	G	NA	64	0	64	67.469	5.915	0	0	0	64	0	C5orf63(dist=98564),MEGF10(dist=118708)	intergenic	NA
RCC_T3--1	chr5:137754996	C	NA	25	0	25	68.680	5.513	0	0	0	25	0	KDM3B	intronic	NA
RCC_T3--2	chr5:137754996	C	NA	28	0	28	68.500	3.133	0	0	0	28	0	KDM3B	intronic	NA
RCC_T3--3	chr5:137754996	C	NA	29	0	29	63.862	10.733	0	0	0	29	0	KDM3B	intronic	NA
RCC_T3--4	chr5:137754996	C	NA	22	0	22	66.591	6.801	0	0	0	22	0	KDM3B	intronic	NA
RCC_T3--5	chr5:137754996	C	A	28	0.143	24	65.167	6.598	4	57.500	12.923	24	4	KDM3B	intronic	NA
RCC_T3--6	chr5:137754996	C	NA	19	0	19	66.105	7.600	0	0	0	19	0	KDM3B	intronic	NA
RCC_T3--7	chr5:137754996	C	NA	26	0	26	67.269	4.133	0	0	0	26	0	KDM3B	intronic	NA
RCC_T3--8	chr5:137754996	C	NA	31	0	31	68.645	2.995	0	0	0	31	0	KDM3B	intronic	NA
RCC_T3--GL	chr5:137754996	C	NA	36	0	36	65.194	6.436	0	0	0	36	0	KDM3B	intronic	NA
RCC_T3--1	chr5:140026832	C	NA	35	0	35	65.371	7.558	0	0	0	35	0	NDUFA2	intronic	NA
RCC_T3--2	chr5:140026832	C	NA	50	0	50	65.520	7.833	0	0	0	50	0	NDUFA2	intronic	NA
RCC_T3--3	chr5:140026832	C	NA	47	0	47	64.277	6.419	0	0	0	47	0	NDUFA2	intronic	NA
RCC_T3--4	chr5:140026832	C	NA	55	0	55	66.855	5.823	0	0	0	55	0	NDUFA2	intronic	NA
RCC_T3--5	chr5:140026832	C	T	48	0.125	42	65.571	8.127	6	57.167	11.974	42	6	NDUFA2	intronic	NA
RCC_T3--6	chr5:140026832	C	NA	38	0	37	63.189	9.646	0	0	0	37	0	NDUFA2	intronic	NA
RCC_T3--7	chr5:140026832	C	NA	53	0	53	65.962	8.346	0	0	0	53	0	NDUFA2	intronic	NA
RCC_T3--8	chr5:140026832	C	NA	55	0	55	65.255	7.785	0	0	0	55	0	NDUFA2	intronic	NA
RCC_T3--GL	chr5:140026832	C	NA	49	0	49	65.184	7.936	0	0	0	49	0	NDUFA2	intronic	NA
RCC_T3--1	chr5:140605144	C	T	174	0.080	160	66.312	4.828	14	63.429	9.605	160	14	PCDHB14	exonic	synonymous_SNV
RCC_T3--2	chr5:140605144	C	T	233	0.021	228	65.092	7.459	5	65.400	3.715	228	5	PCDHB14	exonic	synonymous_SNV
RCC_T3--3	chr5:140605144	C	T	232	0.147	198	65.697	5.376	34	64.029	9.030	198	34	PCDHB14	exonic	synonymous_SNV
RCC_T3--4	chr5:140605144	C	T	176	0.165	147	65.952	6.503	29	68.069	4.928	147	29	PCDHB14	exonic	synonymous_SNV
RCC_T3--5	chr5:140605144	C	NA	174	0	174	64.845	7.377	0	0	0	174	0	PCDHB14	exonic	synonymous_SNV
RCC_T3--6	chr5:140605144	C	NA	214	0	213	64.756	6.156	0	0	0	213	0	PCDHB14	exonic	synonymous_SNV
RCC_T3--7	chr5:140605144	C	T	263	0.175	217	65.415	6.006	46	64.109	7.454	217	46	PCDHB14	exonic	synonymous_SNV
RCC_T3--8	chr5:140605144	C	T	189	0.079	174	65.477	6.950	15	62.933	8.908	174	15	PCDHB14	exonic	synonymous_SNV
RCC_T3--GL	chr5:140605144	C	NA	164	0	164	64.317	8.848	0	0	0	164	0	PCDHB14	exonic	synonymous_SNV
RCC_T3--1	chr5:140729764	G	NA	33	0	33	66.212	9.357	0	0	0	33	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--2	chr5:140729764	G	NA	35	0	35	68.114	3.056	0	0	0	35	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--3	chr5:140729764	G	A	30	0.133	26	68.500	3.712	4	64.000	6.733	26	4	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--4	chr5:140729764	G	NA	35	0	35	67.514	6.060	0	0	0	35	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--5	chr5:140729764	G	NA	32	0	32	65.344	9.607	0	0	0	32	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--6	chr5:140729764	G	NA	25	0	25	64.720	8.517	0	0	0	25	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--7	chr5:140729764	G	NA	38	0	38	66.053	8.649	0	0	0	38	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--8	chr5:140729764	G	NA	33	0	33	68.273	3.685	0	0	0	33	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--GL	chr5:140729764	G	NA	35	0	35	67.286	4.509	0	0	0	35	0	PCDHGA1,PCDHGA2,PCDHGA3	intronic	NA
RCC_T3--1	chr5:147491546	C	NA	49	0	49	68.265	3.931	0	0	0	49	0	SPINK5	intronic	NA
RCC_T3--2	chr5:147491546	C	NA	40	0	40	68.175	4.814	0	0	0	40	0	SPINK5	intronic	NA
RCC_T3--3	chr5:147491546	C	NA	77	0	77	66.909	6.642	0	0	0	77	0	SPINK5	intronic	NA
RCC_T3--4	chr5:147491546	C	NA	62	0	62	69.371	2.943	0	0	0	62	0	SPINK5	intronic	NA
RCC_T3--5	chr5:147491546	C	A	31	0.129	27	67.741	3.569	4	68.250	4.500	27	4	SPINK5	intronic	NA
RCC_T3--6	chr5:147491546	C	NA	49	0	49	67.265	6.160	0	0	0	49	0	SPINK5	intronic	NA
RCC_T3--7	chr5:147491546	C	NA	60	0	60	67.367	6.628	0	0	0	60	0	SPINK5	intronic	NA
RCC_T3--8	chr5:147491546	C	NA	38	0	38	67.974	4.600	0	0	0	38	0	SPINK5	intronic	NA
RCC_T3--GL	chr5:147491546	C	NA	61	0	61	68.131	4.006	0	0	0	61	0	SPINK5	intronic	NA
RCC_T3--1	chr5:150928912	C	NA	48	0	48	64.583	9.276	0	0	0	48	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--2	chr5:150928912	C	NA	78	0	78	66.333	6.534	0	0	0	78	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--3	chr5:150928912	C	NA	92	0	92	65.576	6.952	0	0	0	92	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--4	chr5:150928912	C	NA	45	0	45	67.800	4.246	0	0	0	45	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--5	chr5:150928912	C	NA	27	0	27	61.667	11.368	0	0	0	27	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--6	chr5:150928912	C	A	53	0.113	47	65.319	6.786	6	64.500	4.087	47	6	FAT2	exonic	nonsynonymous_SNV
RCC_T3--7	chr5:150928912	C	NA	55	0	54	66.056	6.643	0	0	0	54	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--8	chr5:150928912	C	NA	51	0	51	66.098	8.362	0	0	0	51	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr5:150928912	C	NA	66	0	66	66.242	3.871	0	0	0	66	0	FAT2	exonic	nonsynonymous_SNV
RCC_T3--1	chr5:153143989	T	NA	62	0	62	66.774	5.562	0	0	0	62	0	GRIA1	intronic	NA
RCC_T3--2	chr5:153143989	T	NA	60	0	60	67.400	4.669	0	0	0	60	0	GRIA1	intronic	NA
RCC_T3--3	chr5:153143989	T	NA	60	0	60	66.317	7.574	0	0	0	60	0	GRIA1	intronic	NA
RCC_T3--4	chr5:153143989	T	NA	51	0	51	67.922	6.315	0	0	0	51	0	GRIA1	intronic	NA
RCC_T3--5	chr5:153143989	T	NA	61	0	61	67.557	4.493	0	0	0	61	0	GRIA1	intronic	NA
RCC_T3--6	chr5:153143989	T	C	58	0.103	52	65.135	6.478	6	67.833	3.920	52	6	GRIA1	intronic	NA
RCC_T3--7	chr5:153143989	T	NA	66	0	66	66.909	5.590	0	0	0	66	0	GRIA1	intronic	NA
RCC_T3--8	chr5:153143989	T	NA	64	0	63	66.968	5.682	0	0	0	63	0	GRIA1	intronic	NA
RCC_T3--GL	chr5:153143989	T	NA	58	0	58	65.690	8.148	0	0	0	58	0	GRIA1	intronic	NA
RCC_T3--1	chr5:156738614	T	NA	50	0	50	65.140	8.942	0	0	0	50	0	CYFIP2	intronic	NA
RCC_T3--2	chr5:156738614	T	NA	57	0	57	66.316	6.027	0	0	0	57	0	CYFIP2	intronic	NA
RCC_T3--3	chr5:156738614	T	NA	55	0	54	66.241	7.663	0	0	0	54	0	CYFIP2	intronic	NA
RCC_T3--4	chr5:156738614	T	NA	55	0	55	67.582	3.819	0	0	0	55	0	CYFIP2	intronic	NA
RCC_T3--5	chr5:156738614	T	NA	41	0	41	66.512	5.784	0	0	0	41	0	CYFIP2	intronic	NA
RCC_T3--6	chr5:156738614	T	NA	49	0	49	65.061	6.391	0	0	0	49	0	CYFIP2	intronic	NA
RCC_T3--7	chr5:156738614	T	NA	50	0	50	66.760	5.347	0	0	0	50	0	CYFIP2	intronic	NA
RCC_T3--8	chr5:156738614	T	G	54	0.148	46	67.109	3.315	8	64.000	2.828	46	8	CYFIP2	intronic	NA
RCC_T3--GL	chr5:156738614	T	NA	47	0	47	62.787	8.127	0	0	0	47	0	CYFIP2	intronic	NA
RCC_T3--1	chr5:158524056	C	NA	31	0	31	65.097	7.985	0	0	0	31	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--2	chr5:158524056	C	NA	46	0	46	63.957	10.991	0	0	0	46	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--3	chr5:158524056	C	T	55	0.018	54	62.370	10.955	1	71.000	0.000	54	1	EBF1	exonic	nonsynonymous_SNV
RCC_T3--4	chr5:158524056	C	NA	28	0	28	63.679	10.111	0	0	0	28	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--5	chr5:158524056	C	T	33	0.121	29	60.069	12.366	4	55.750	12.553	29	4	EBF1	exonic	nonsynonymous_SNV
RCC_T3--6	chr5:158524056	C	NA	38	0	38	64.553	8.372	0	0	0	38	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--7	chr5:158524056	C	NA	49	0	49	64.224	9.301	0	0	0	49	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--8	chr5:158524056	C	NA	49	0	49	64.061	9.534	0	0	0	49	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr5:158524056	C	NA	62	0	62	62.387	10.532	0	0	0	62	0	EBF1	exonic	nonsynonymous_SNV
RCC_T3--1	chr5:167920022	T	A	18	0.167	15	69.600	2.414	3	63.000	1.732	15	3	RARS	intronic	NA
RCC_T3--2	chr5:167920022	T	A	20	0.150	17	69.824	2.531	3	60.000	11.358	17	3	RARS	intronic	NA
RCC_T3--3	chr5:167920022	T	NA	22	0	22	68.182	3.487	0	0	0	22	0	RARS	intronic	NA
RCC_T3--4	chr5:167920022	T	A	23	0.043	22	68.773	5.580	1	68.000	0.000	22	1	RARS	intronic	NA
RCC_T3--5	chr5:167920022	T	NA	11	0	11	67.364	5.591	0	0	0	11	0	RARS	intronic	NA
RCC_T3--6	chr5:167920022	T	NA	13	0	13	70.538	1.664	0	0	0	13	0	RARS	intronic	NA
RCC_T3--7	chr5:167920022	T	NA	23	0	23	69.043	3.879	0	0	0	23	0	RARS	intronic	NA
RCC_T3--8	chr5:167920022	T	NA	23	0	23	69.391	3.285	0	0	0	23	0	RARS	intronic	NA
RCC_T3--GL	chr5:167920022	T	NA	33	0	33	69.545	2.599	0	0	0	33	0	RARS	intronic	NA
RCC_T3--1	chr5:168175203	G	A	66	0.318	44	66.977	6.835	21	65.619	9.308	44	21	SLIT3	intronic	NA
RCC_T3--2	chr5:168175203	G	A	88	0.307	61	65.016	7.884	27	65.111	7.089	61	27	SLIT3	intronic	NA
RCC_T3--3	chr5:168175203	G	A	116	0.353	75	64.493	8.752	41	66.488	6.079	75	41	SLIT3	intronic	NA
RCC_T3--4	chr5:168175203	G	A	80	0.375	50	64.940	9.137	30	67.167	4.161	50	30	SLIT3	intronic	NA
RCC_T3--5	chr5:168175203	G	NA	65	0	65	64.892	7.437	0	0	0	65	0	SLIT3	intronic	NA
RCC_T3--6	chr5:168175203	G	A	66	0.091	60	64.983	6.342	6	68.000	4.427	60	6	SLIT3	intronic	NA
RCC_T3--7	chr5:168175203	G	A	87	0.448	48	65.396	6.101	39	65.026	8.074	48	39	SLIT3	intronic	NA
RCC_T3--8	chr5:168175203	G	A	73	0.301	51	65.784	5.330	22	66.773	3.558	51	22	SLIT3	intronic	NA
RCC_T3--GL	chr5:168175203	G	NA	93	0	93	65.828	5.390	0	0	0	93	0	SLIT3	intronic	NA
RCC_T3--1	chr5:177593301	A	NA	53	0	53	66.075	6.348	0	0	0	53	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--2	chr5:177593301	A	NA	54	0	54	65.870	7.519	0	0	0	54	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--3	chr5:177593301	A	NA	57	0	57	65.842	6.062	0	0	0	57	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--4	chr5:177593301	A	NA	71	0	71	64.577	9.455	0	0	0	71	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--5	chr5:177593301	A	NA	40	0	40	65.875	5.958	0	0	0	40	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--6	chr5:177593301	A	NA	40	0	40	67.175	3.381	0	0	0	40	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--7	chr5:177593301	A	G	46	0.130	40	66.800	6.537	6	64.000	3.033	40	6	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--8	chr5:177593301	A	NA	41	0	41	66.415	5.495	0	0	0	41	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--GL	chr5:177593301	A	NA	57	0	57	64.737	8.055	0	0	0	57	0	NHP2(dist=12340),GMCL1P1(dist=18210)	intergenic	NA
RCC_T3--1	chr5:177649383	T	C	42	0.143	36	66.667	4.928	6	66.833	4.916	36	6	PHYKPL	exonic	synonymous_SNV
RCC_T3--2	chr5:177649383	T	NA	63	0	63	67.524	4.024	0	0	0	63	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--3	chr5:177649383	T	NA	71	0	71	65.535	7.133	0	0	0	71	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--4	chr5:177649383	T	NA	59	0	59	66.339	6.955	0	0	0	59	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--5	chr5:177649383	T	NA	45	0	45	67.733	3.313	0	0	0	45	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--6	chr5:177649383	T	NA	64	0	64	65.984	6.936	0	0	0	64	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--7	chr5:177649383	T	NA	66	0	65	66.338	5.707	0	0	0	65	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--8	chr5:177649383	T	NA	60	0	60	67.833	4.350	0	0	0	60	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--GL	chr5:177649383	T	NA	56	0	56	66.036	4.694	0	0	0	56	0	PHYKPL	exonic	synonymous_SNV
RCC_T3--1	chr5:178418301	G	T	24	0.208	19	62.474	11.379	5	61.000	2.121	19	5	GRM6	intronic	NA
RCC_T3--2	chr5:178418301	G	T	58	0.086	53	65.623	9.105	5	63.000	1.414	53	5	GRM6	intronic	NA
RCC_T3--3	chr5:178418301	G	T	47	0.064	44	63.636	9.086	3	63.667	0.577	44	3	GRM6	intronic	NA
RCC_T3--4	chr5:178418301	G	T	55	0.073	51	63.314	10.175	4	62.500	1.915	51	4	GRM6	intronic	NA
RCC_T3--5	chr5:178418301	G	T	38	0.026	37	64.622	8.408	1	64.000	0.000	37	1	GRM6	intronic	NA
RCC_T3--6	chr5:178418301	G	T	45	0.089	41	64.537	10.526	4	61.250	2.986	41	4	GRM6	intronic	NA
RCC_T3--7	chr5:178418301	G	T	45	0.022	44	65.477	8.382	1	64.000	0.000	44	1	GRM6	intronic	NA
RCC_T3--8	chr5:178418301	G	T	53	0.057	50	66.000	7.890	3	62.667	1.155	50	3	GRM6	intronic	NA
RCC_T3--GL	chr5:178418301	G	NA	40	0	40	60.875	13.100	0	0	0	40	0	GRM6	intronic	NA
RCC_T3--1	chr5:179228385	C	NA	24	0	24	67.083	4.323	0	0	0	24	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--2	chr5:179228385	C	NA	28	0	28	66.536	4.342	0	0	0	28	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--3	chr5:179228385	C	A	32	0.125	28	66.679	4.217	4	67.750	2.630	28	4	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--4	chr5:179228385	C	NA	37	0	37	67.027	3.955	0	0	0	37	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--5	chr5:179228385	C	NA	24	0	24	67.000	5.004	0	0	0	24	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--6	chr5:179228385	C	NA	29	0	29	65.172	5.813	0	0	0	29	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--7	chr5:179228385	C	NA	27	0	27	66.111	3.662	0	0	0	27	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--8	chr5:179228385	C	NA	36	0	36	65.167	9.334	0	0	0	36	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr5:179228385	C	NA	37	0	37	64.324	8.007	0	0	0	37	0	MGAT4B	exonic	nonsynonymous_SNV
RCC_T3--1	chr5:179541432	C	NA	27	0	27	64.185	8.801	0	0	0	27	0	RASGEF1C	intronic	NA
RCC_T3--2	chr5:179541432	C	NA	32	0	32	68.062	3.131	0	0	0	32	0	RASGEF1C	intronic	NA
RCC_T3--3	chr5:179541432	C	NA	26	0	26	64.423	8.719	0	0	0	26	0	RASGEF1C	intronic	NA
RCC_T3--4	chr5:179541432	C	A	32	0.156	27	68.444	3.332	5	59.000	14.543	27	5	RASGEF1C	intronic	NA
RCC_T3--5	chr5:179541432	C	NA	23	0	23	65.304	6.241	0	0	0	23	0	RASGEF1C	intronic	NA
RCC_T3--6	chr5:179541432	C	NA	12	0	12	58.917	13.153	0	0	0	12	0	RASGEF1C	intronic	NA
RCC_T3--7	chr5:179541432	C	NA	41	0	41	66.024	6.578	0	0	0	41	0	RASGEF1C	intronic	NA
RCC_T3--8	chr5:179541432	C	NA	27	0	27	65.556	4.526	0	0	0	27	0	RASGEF1C	intronic	NA
RCC_T3--GL	chr5:179541432	C	NA	41	0	41	64.000	8.815	0	0	0	41	0	RASGEF1C	intronic	NA
RCC_T3--1	chr5:36958126	T	G	33	0.030	32	60.406	10.874	1	33.000	0.000	32	1	NIPBL	intronic	NA
RCC_T3--2	chr5:36958126	T	G	32	0.062	30	61.200	11.028	2	35.500	3.536	30	2	NIPBL	intronic	NA
RCC_T3--3	chr5:36958126	T	NA	37	0	37	59.108	11.389	0	0	0	37	0	NIPBL	intronic	NA
RCC_T3--4	chr5:36958126	T	NA	46	0	46	61.348	10.680	0	0	0	46	0	NIPBL	intronic	NA
RCC_T3--5	chr5:36958126	T	G	38	0.184	31	59.677	11.059	7	38.857	1.464	31	7	NIPBL	intronic	NA
RCC_T3--6	chr5:36958126	T	G	36	0.083	32	61.188	9.637	3	35.667	2.517	32	3	NIPBL	intronic	NA
RCC_T3--7	chr5:36958126	T	G	43	0.093	39	57.872	12.478	4	35.500	2.887	39	4	NIPBL	intronic	NA
RCC_T3--8	chr5:36958126	T	G	40	0.050	38	61.842	9.791	2	42.500	6.364	38	2	NIPBL	intronic	NA
RCC_T3--GL	chr5:36958126	T	NA	40	0	40	60.500	10.127	0	0	0	40	0	NIPBL	intronic	NA
RCC_T3--1	chr5:44114174	T	NA	27	0	27	68.333	3.475	0	0	0	27	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--2	chr5:44114174	T	NA	31	0	31	64.677	8.553	0	0	0	31	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--3	chr5:44114174	T	NA	40	0	40	64.850	8.353	0	0	0	40	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--4	chr5:44114174	T	A	46	0.130	40	68.725	4.591	6	68.167	2.563	40	6	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--5	chr5:44114174	T	NA	33	0	33	64.879	7.206	0	0	0	33	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--6	chr5:44114174	T	NA	33	0	33	64.788	7.932	0	0	0	33	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--7	chr5:44114174	T	NA	20	0	20	65.450	7.207	0	0	0	20	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--8	chr5:44114174	T	NA	40	0	40	68.325	3.206	0	0	0	40	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--GL	chr5:44114174	T	NA	40	0	40	65.550	7.352	0	0	0	40	0	NNT(dist=408506),FGF10(dist=190923)	intergenic	NA
RCC_T3--1	chr5:54403523	C	NA	29	0	29	65.931	7.445	0	0	0	29	0	GZMA	intronic	NA
RCC_T3--2	chr5:54403523	C	NA	30	0	30	68.267	3.930	0	0	0	30	0	GZMA	intronic	NA
RCC_T3--3	chr5:54403523	C	NA	29	0	29	67.552	6.063	0	0	0	29	0	GZMA	intronic	NA
RCC_T3--4	chr5:54403523	C	NA	39	0	38	66.421	8.648	0	0	0	38	0	GZMA	intronic	NA
RCC_T3--5	chr5:54403523	C	T	18	0.167	15	67.667	5.205	3	63.667	1.528	15	3	GZMA	intronic	NA
RCC_T3--6	chr5:54403523	C	NA	24	0	24	66.083	5.563	0	0	0	24	0	GZMA	intronic	NA
RCC_T3--7	chr5:54403523	C	NA	38	0	38	68.000	6.613	0	0	0	38	0	GZMA	intronic	NA
RCC_T3--8	chr5:54403523	C	NA	40	0	40	68.200	5.307	0	0	0	40	0	GZMA	intronic	NA
RCC_T3--GL	chr5:54403523	C	NA	34	0	33	67.515	6.221	0	0	0	33	0	GZMA	intronic	NA
RCC_T3--1	chr5:72798607	C	NA	34	0	34	68.971	5.108	0	0	0	34	0	BTF3	intronic	NA
RCC_T3--2	chr5:72798607	C	T	27	0.148	23	68.696	3.686	4	64.250	1.500	23	4	BTF3	intronic	NA
RCC_T3--3	chr5:72798607	C	NA	37	0	37	68.919	3.419	0	0	0	37	0	BTF3	intronic	NA
RCC_T3--4	chr5:72798607	C	NA	42	0	42	69.881	2.255	0	0	0	42	0	BTF3	intronic	NA
RCC_T3--5	chr5:72798607	C	NA	19	0	19	67.579	7.229	0	0	0	19	0	BTF3	intronic	NA
RCC_T3--6	chr5:72798607	C	NA	25	0	25	68.280	3.846	0	0	0	25	0	BTF3	intronic	NA
RCC_T3--7	chr5:72798607	C	NA	26	0	26	69.654	2.416	0	0	0	26	0	BTF3	intronic	NA
RCC_T3--8	chr5:72798607	C	NA	23	0	23	69.261	4.298	0	0	0	23	0	BTF3	intronic	NA
RCC_T3--GL	chr5:72798607	C	NA	34	0	34	68.529	4.092	0	0	0	34	0	BTF3	intronic	NA
RCC_T3--1	chr5:75049188	T	NA	31	0	31	68.097	4.166	0	0	0	31	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--2	chr5:75049188	T	NA	46	0	46	67.000	7.177	0	0	0	46	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--3	chr5:75049188	T	NA	38	0	38	69.474	3.108	0	0	0	38	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--4	chr5:75049188	T	NA	51	0	51	67.569	5.080	0	0	0	51	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--5	chr5:75049188	T	C	32	0.156	27	66.741	5.208	5	68.200	2.490	27	5	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--6	chr5:75049188	T	NA	50	0	50	65.960	4.562	0	0	0	50	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--7	chr5:75049188	T	NA	61	0	61	67.066	5.253	0	0	0	61	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--8	chr5:75049188	T	NA	46	0	46	68.217	3.546	0	0	0	46	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--GL	chr5:75049188	T	NA	57	0	57	66.982	3.971	0	0	0	57	0	POC5(dist=35875),SV2C(dist=330117)	intergenic	NA
RCC_T3--1	chr5:79584572	C	T	32	0.125	28	63.357	9.397	4	55.000	13.241	28	4	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--2	chr5:79584572	C	NA	41	0	41	64.561	9.116	0	0	0	41	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--3	chr5:79584572	C	NA	29	0	29	62.724	9.591	0	0	0	29	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--4	chr5:79584572	C	NA	40	0	39	63.641	9.577	0	0	0	39	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--5	chr5:79584572	C	NA	24	0	24	63.917	9.762	0	0	0	24	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--6	chr5:79584572	C	NA	33	0	33	65.242	7.190	0	0	0	33	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--7	chr5:79584572	C	NA	42	0	42	64.167	8.213	0	0	0	42	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--8	chr5:79584572	C	NA	42	0	42	66.310	6.346	0	0	0	42	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--GL	chr5:79584572	C	NA	47	0	47	63.213	9.174	0	0	0	47	0	SERINC5(dist=32674),LOC644936(dist=10345)	intergenic	NA
RCC_T3--1	chr5:83042315	G	NA	118	0	118	66.602	7.463	0	0	0	118	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--2	chr5:83042315	G	T	120	0.125	105	67.229	6.496	15	65.000	4.472	105	15	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--3	chr5:83042315	G	NA	117	0	117	65.521	7.768	0	0	0	117	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--4	chr5:83042315	G	T	105	0.019	103	66.709	6.355	2	60.500	6.364	103	2	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--5	chr5:83042315	G	NA	153	0	153	66.458	6.373	0	0	0	153	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--6	chr5:83042315	G	T	157	0.006	156	66.885	5.148	1	33.000	0.000	156	1	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--7	chr5:83042315	G	NA	141	0	141	66.085	6.882	0	0	0	141	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--8	chr5:83042315	G	NA	115	0	114	66.439	6.970	0	0	0	114	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--GL	chr5:83042315	G	NA	128	0	128	65.648	6.845	0	0	0	128	0	HAPLN1(dist=25419),EDIL3(dist=194099)	intergenic	NA
RCC_T3--1	chr5:86669967	T	A	27	0.148	22	69.773	2.224	4	69.750	2.630	22	4	RASA1	intronic	NA
RCC_T3--2	chr5:86669967	T	NA	30	0	30	69.300	3.131	0	0	0	30	0	RASA1	intronic	NA
RCC_T3--3	chr5:86669967	T	NA	25	0	25	68.240	3.244	0	0	0	25	0	RASA1	intronic	NA
RCC_T3--4	chr5:86669967	T	NA	28	0	28	69.857	2.677	0	0	0	28	0	RASA1	intronic	NA
RCC_T3--5	chr5:86669967	T	NA	21	0	21	69.429	2.638	0	0	0	21	0	RASA1	intronic	NA
RCC_T3--6	chr5:86669967	T	A	25	0.040	24	70.250	2.048	1	71.000	0.000	24	1	RASA1	intronic	NA
RCC_T3--7	chr5:86669967	T	A	20	0.050	19	69.895	2.378	1	71.000	0.000	19	1	RASA1	intronic	NA
RCC_T3--8	chr5:86669967	T	A	17	0.118	15	70.067	1.668	2	62.000	7.071	15	2	RASA1	intronic	NA
RCC_T3--GL	chr5:86669967	T	NA	33	0	33	68.515	3.898	0	0	0	33	0	RASA1	intronic	NA
RCC_T3--1	chr5:94938881	A	NA	37	0	37	68.865	3.845	0	0	0	37	0	ARSK	intronic	NA
RCC_T3--2	chr5:94938881	A	NA	48	0	48	68.042	5.231	0	0	0	48	0	ARSK	intronic	NA
RCC_T3--3	chr5:94938881	A	NA	50	0	50	67.140	6.934	0	0	0	50	0	ARSK	intronic	NA
RCC_T3--4	chr5:94938881	A	NA	32	0	32	66.938	5.685	0	0	0	32	0	ARSK	intronic	NA
RCC_T3--5	chr5:94938881	A	C	26	0.154	22	66.682	3.981	4	63.750	1.893	22	4	ARSK	intronic	NA
RCC_T3--6	chr5:94938881	A	NA	42	0	42	65.595	6.379	0	0	0	42	0	ARSK	intronic	NA
RCC_T3--7	chr5:94938881	A	NA	45	0	45	69.400	2.717	0	0	0	45	0	ARSK	intronic	NA
RCC_T3--8	chr5:94938881	A	NA	30	0	30	67.367	4.165	0	0	0	30	0	ARSK	intronic	NA
RCC_T3--GL	chr5:94938881	A	NA	43	0	43	67.070	6.189	0	0	0	43	0	ARSK	intronic	NA
RCC_T3--1	chr5:97361953	C	A	17	0.176	14	69.286	2.644	3	62.667	1.155	14	3	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--2	chr5:97361953	C	NA	35	0	35	68.914	3.501	0	0	0	35	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--3	chr5:97361953	C	NA	31	0	31	67.355	5.426	0	0	0	31	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--4	chr5:97361953	C	NA	46	0	46	67.652	5.425	0	0	0	46	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--5	chr5:97361953	C	NA	14	0	14	69.714	3.049	0	0	0	14	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--6	chr5:97361953	C	NA	23	0	23	68.870	2.616	0	0	0	23	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--7	chr5:97361953	C	NA	43	0	43	67.860	4.161	0	0	0	43	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--8	chr5:97361953	C	NA	41	0	41	68.171	3.626	0	0	0	41	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--GL	chr5:97361953	C	NA	36	0	36	68.139	3.712	0	0	0	36	0	LOC102546227(dist=355198),RGMB(dist=743046)	intergenic	NA
RCC_T3--1	chr5:97912755	C	NA	29	0	29	67.276	3.358	0	0	0	29	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--2	chr5:97912755	C	NA	32	0	32	66.438	6.370	0	0	0	32	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--3	chr5:97912755	C	NA	36	0	36	67.389	5.783	0	0	0	36	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--4	chr5:97912755	C	NA	37	0	37	68.811	3.748	0	0	0	37	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--5	chr5:97912755	C	NA	35	0	35	68.171	4.301	0	0	0	35	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--6	chr5:97912755	C	T	36	0.111	32	66.438	6.127	4	67.000	5.228	32	4	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--7	chr5:97912755	C	NA	23	0	23	68.304	3.573	0	0	0	23	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--8	chr5:97912755	C	NA	23	0	23	67.391	3.500	0	0	0	23	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--GL	chr5:97912755	C	NA	33	0	33	67.182	4.953	0	0	0	33	0	LOC102546227(dist=906000),RGMB(dist=192244)	intergenic	NA
RCC_T3--1	chr6:100024004	G	A	39	0.128	34	68.647	6.884	5	69.800	4.382	34	5	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--2	chr6:100024004	G	NA	36	0	36	66.611	8.083	0	0	0	36	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--3	chr6:100024004	G	NA	38	0	38	68.026	6.688	0	0	0	38	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--4	chr6:100024004	G	NA	35	0	35	67.257	5.282	0	0	0	35	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--5	chr6:100024004	G	NA	28	0	28	68.179	3.926	0	0	0	28	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--6	chr6:100024004	G	NA	34	0	34	67.471	4.869	0	0	0	34	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--7	chr6:100024004	G	NA	51	0	51	67.098	6.233	0	0	0	51	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--8	chr6:100024004	G	NA	37	0	37	68.270	4.188	0	0	0	37	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--GL	chr6:100024004	G	NA	46	0	46	67.217	6.222	0	0	0	46	0	CCNC(dist=7314),PRDM13(dist=30646)	intergenic	NA
RCC_T3--1	chr6:116892779	C	NA	38	0	38	65.553	6.892	0	0	0	38	0	RWDD1	exonic	synonymous_SNV
RCC_T3--2	chr6:116892779	C	T	43	0.140	37	63.054	7.601	6	66.167	7.055	37	6	RWDD1	exonic	synonymous_SNV
RCC_T3--3	chr6:116892779	C	NA	38	0	38	64.053	7.993	0	0	0	38	0	RWDD1	exonic	synonymous_SNV
RCC_T3--4	chr6:116892779	C	NA	59	0	59	61.814	10.126	0	0	0	59	0	RWDD1	exonic	synonymous_SNV
RCC_T3--5	chr6:116892779	C	NA	62	0	61	63.508	7.957	0	0	0	61	0	RWDD1	exonic	synonymous_SNV
RCC_T3--6	chr6:116892779	C	NA	50	0	49	61.408	10.604	0	0	0	49	0	RWDD1	exonic	synonymous_SNV
RCC_T3--7	chr6:116892779	C	NA	65	0	65	63.200	7.787	0	0	0	65	0	RWDD1	exonic	synonymous_SNV
RCC_T3--8	chr6:116892779	C	NA	45	0	45	65.311	6.752	0	0	0	45	0	RWDD1	exonic	synonymous_SNV
RCC_T3--GL	chr6:116892779	C	NA	56	0	56	63.179	7.955	0	0	0	56	0	RWDD1	exonic	synonymous_SNV
RCC_T3--1	chr6:131917911	C	NA	20	0	20	69.650	1.981	0	0	0	20	0	MED23	intronic	NA
RCC_T3--2	chr6:131917911	C	A	29	0.138	25	69.320	3.625	4	65.750	0.500	25	4	MED23	intronic	NA
RCC_T3--3	chr6:131917911	C	NA	30	0	30	68.667	3.977	0	0	0	30	0	MED23	intronic	NA
RCC_T3--4	chr6:131917911	C	NA	30	0	30	70.333	2.233	0	0	0	30	0	MED23	intronic	NA
RCC_T3--5	chr6:131917911	C	NA	23	0	23	68.348	4.063	0	0	0	23	0	MED23	intronic	NA
RCC_T3--6	chr6:131917911	C	NA	21	0	21	69.143	2.496	0	0	0	21	0	MED23	intronic	NA
RCC_T3--7	chr6:131917911	C	NA	44	0	44	68.500	3.739	0	0	0	44	0	MED23	intronic	NA
RCC_T3--8	chr6:131917911	C	NA	25	0	25	68.520	4.350	0	0	0	25	0	MED23	intronic	NA
RCC_T3--GL	chr6:131917911	C	NA	43	0	43	68.116	4.573	0	0	0	43	0	MED23	intronic	NA
RCC_T3--1	chr6:153292179	T	NA	16	0	16	65.188	5.443	0	0	0	16	0	FBXO5	UTR3	NA
RCC_T3--2	chr6:153292179	T	NA	18	0	18	65.333	4.678	0	0	0	18	0	FBXO5	UTR3	NA
RCC_T3--3	chr6:153292179	T	NA	32	0	32	64.219	4.506	0	0	0	32	0	FBXO5	UTR3	NA
RCC_T3--4	chr6:153292179	T	G	15	0.200	12	65.167	3.738	3	67.333	1.155	12	3	FBXO5	UTR3	NA
RCC_T3--5	chr6:153292179	T	NA	29	0	29	63.897	5.052	0	0	0	29	0	FBXO5	UTR3	NA
RCC_T3--6	chr6:153292179	T	NA	18	0	18	65.611	2.993	0	0	0	18	0	FBXO5	UTR3	NA
RCC_T3--7	chr6:153292179	T	NA	19	0	19	65.632	2.833	0	0	0	19	0	FBXO5	UTR3	NA
RCC_T3--8	chr6:153292179	T	NA	19	0	19	65.895	1.629	0	0	0	19	0	FBXO5	UTR3	NA
RCC_T3--GL	chr6:153292179	T	NA	34	0	34	64.706	3.834	0	0	0	34	0	FBXO5	UTR3	NA
RCC_T3--1	chr6:159657443	T	NA	125	0	125	68.776	4.513	0	0	0	125	0	FNDC1	intronic	NA
RCC_T3--2	chr6:159657443	T	G	162	0.019	159	68.962	3.397	3	59.000	22.517	159	3	FNDC1	intronic	NA
RCC_T3--3	chr6:159657443	T	NA	165	0	165	68.939	4.493	0	0	0	165	0	FNDC1	intronic	NA
RCC_T3--4	chr6:159657443	T	NA	168	0	167	68.671	4.974	0	0	0	167	0	FNDC1	intronic	NA
RCC_T3--5	chr6:159657443	T	G	151	0.020	148	68.635	4.292	3	68.667	3.512	148	3	FNDC1	intronic	NA
RCC_T3--6	chr6:159657443	T	G	143	0.091	130	68.331	5.781	13	67.615	5.124	130	13	FNDC1	intronic	NA
RCC_T3--7	chr6:159657443	T	NA	200	0	200	68.670	4.461	0	0	0	200	0	FNDC1	intronic	NA
RCC_T3--8	chr6:159657443	T	G	135	0.163	113	68.991	5.523	22	69.500	2.891	113	22	FNDC1	intronic	NA
RCC_T3--GL	chr6:159657443	T	NA	140	0	140	69.007	4.457	0	0	0	140	0	FNDC1	intronic	NA
RCC_T3--1	chr6:27418954	C	A	42	0.143	36	68.278	6.372	6	70.667	2.805	36	6	ZNF184	UTR3	NA
RCC_T3--2	chr6:27418954	C	A	40	0.275	29	69.828	2.713	11	69.182	2.960	29	11	ZNF184	UTR3	NA
RCC_T3--3	chr6:27418954	C	A	60	0.300	42	67.381	7.054	18	69.889	2.826	42	18	ZNF184	UTR3	NA
RCC_T3--4	chr6:27418954	C	A	47	0.170	39	69.513	2.771	8	66.500	10.142	39	8	ZNF184	UTR3	NA
RCC_T3--5	chr6:27418954	C	A	31	0.097	28	69.071	3.569	3	70.000	0.000	28	3	ZNF184	UTR3	NA
RCC_T3--6	chr6:27418954	C	A	47	0.064	44	67.500	5.187	3	71.333	1.155	44	3	ZNF184	UTR3	NA
RCC_T3--7	chr6:27418954	C	A	62	0.226	48	68.812	4.792	14	67.357	4.877	48	14	ZNF184	UTR3	NA
RCC_T3--8	chr6:27418954	C	A	48	0.188	39	69.179	3.612	9	65.778	9.985	39	9	ZNF184	UTR3	NA
RCC_T3--GL	chr6:27418954	C	NA	55	0	55	67.982	5.489	0	0	0	55	0	ZNF184	UTR3	NA
RCC_T3--1	chr6:33636937	C	NA	47	0	47	65.234	3.191	0	0	0	47	0	ITPR3	intronic	NA
RCC_T3--2	chr6:33636937	C	NA	54	0	54	64.889	3.975	0	0	0	54	0	ITPR3	intronic	NA
RCC_T3--3	chr6:33636937	C	NA	35	0	35	64.114	6.365	0	0	0	35	0	ITPR3	intronic	NA
RCC_T3--4	chr6:33636937	C	NA	36	0	36	63.556	6.153	0	0	0	36	0	ITPR3	intronic	NA
RCC_T3--5	chr6:33636937	C	T	35	0.114	31	62.000	6.522	4	63.000	1.155	31	4	ITPR3	intronic	NA
RCC_T3--6	chr6:33636937	C	NA	30	0	30	62.833	8.141	0	0	0	30	0	ITPR3	intronic	NA
RCC_T3--7	chr6:33636937	C	NA	34	0	34	62.882	8.355	0	0	0	34	0	ITPR3	intronic	NA
RCC_T3--8	chr6:33636937	C	NA	44	0	44	62.045	9.371	0	0	0	44	0	ITPR3	intronic	NA
RCC_T3--GL	chr6:33636937	C	NA	57	0	57	61.351	9.473	0	0	0	57	0	ITPR3	intronic	NA
RCC_T3--1	chr6:33643465	C	A	41	0.024	40	65.500	6.051	1	33.000	0.000	40	1	ITPR3	intronic	NA
RCC_T3--2	chr6:33643465	C	NA	41	0	41	66.317	7.066	0	0	0	41	0	ITPR3	intronic	NA
RCC_T3--3	chr6:33643465	C	NA	31	0	31	65.387	6.647	0	0	0	31	0	ITPR3	intronic	NA
RCC_T3--4	chr6:33643465	C	NA	38	0	36	65.806	4.967	0	0	0	36	0	ITPR3	intronic	NA
RCC_T3--5	chr6:33643465	C	NA	38	0	38	66.158	6.475	0	0	0	38	0	ITPR3	intronic	NA
RCC_T3--6	chr6:33643465	C	A	54	0.111	48	66.104	6.224	6	68.500	2.811	48	6	ITPR3	intronic	NA
RCC_T3--7	chr6:33643465	C	NA	40	0	40	66.175	6.004	0	0	0	40	0	ITPR3	intronic	NA
RCC_T3--8	chr6:33643465	C	NA	40	0	40	66.500	5.575	0	0	0	40	0	ITPR3	intronic	NA
RCC_T3--GL	chr6:33643465	C	NA	46	0	46	65.043	7.843	0	0	0	46	0	ITPR3	intronic	NA
RCC_T3--1	chr6:37442191	C	NA	25	0	25	68.160	3.749	0	0	0	25	0	CMTR1	intronic	NA
RCC_T3--2	chr6:37442191	C	NA	50	0	50	69.180	3.256	0	0	0	50	0	CMTR1	intronic	NA
RCC_T3--3	chr6:37442191	C	NA	41	0	41	68.488	5.450	0	0	0	41	0	CMTR1	intronic	NA
RCC_T3--4	chr6:37442191	C	NA	56	0	56	69.571	2.935	0	0	0	56	0	CMTR1	intronic	NA
RCC_T3--5	chr6:37442191	C	NA	39	0	39	67.821	4.507	0	0	0	39	0	CMTR1	intronic	NA
RCC_T3--6	chr6:37442191	C	NA	37	0	37	68.108	3.680	0	0	0	37	0	CMTR1	intronic	NA
RCC_T3--7	chr6:37442191	C	A	50	0.120	44	68.818	3.466	6	66.000	4.099	44	6	CMTR1	intronic	NA
RCC_T3--8	chr6:37442191	C	NA	51	0	51	69.667	2.422	0	0	0	51	0	CMTR1	intronic	NA
RCC_T3--GL	chr6:37442191	C	NA	56	0	56	68.357	3.376	0	0	0	56	0	CMTR1	intronic	NA
RCC_T3--1	chr6:37606321	G	A	39	0.128	34	63.824	7.669	5	57.200	14.043	34	5	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--2	chr6:37606321	G	NA	64	0	64	62.875	9.501	0	0	0	64	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--3	chr6:37606321	G	NA	79	0	79	64.000	7.179	0	0	0	79	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--4	chr6:37606321	G	A	34	0.029	33	63.212	8.536	1	72.000	0.000	33	1	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--5	chr6:37606321	G	A	64	0.031	62	61.371	9.466	2	39.000	8.485	62	2	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--6	chr6:37606321	G	NA	41	0	40	62.875	9.163	0	0	0	40	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--7	chr6:37606321	G	NA	78	0	78	62.026	9.503	0	0	0	78	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--8	chr6:37606321	G	NA	39	0	39	65.462	7.553	0	0	0	39	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr6:37606321	G	NA	52	0	52	63.654	6.453	0	0	0	52	0	MDGA1	exonic	nonsynonymous_SNV
RCC_T3--1	chr6:39290263	C	NA	18	0	18	65.889	5.109	0	0	0	18	0	KCNK16	exonic	synonymous_SNV
RCC_T3--2	chr6:39290263	C	NA	16	0	16	68.625	2.729	0	0	0	16	0	KCNK16	exonic	synonymous_SNV
RCC_T3--3	chr6:39290263	C	NA	17	0	17	67.294	4.356	0	0	0	17	0	KCNK16	exonic	synonymous_SNV
RCC_T3--4	chr6:39290263	C	NA	24	0	24	68.417	3.348	0	0	0	24	0	KCNK16	exonic	synonymous_SNV
RCC_T3--5	chr6:39290263	C	NA	17	0	17	66.353	5.111	0	0	0	17	0	KCNK16	exonic	synonymous_SNV
RCC_T3--6	chr6:39290263	C	A	31	0.194	25	64.920	7.905	6	57.333	5.989	25	6	KCNK16	exonic	synonymous_SNV
RCC_T3--7	chr6:39290263	C	NA	21	0	21	65.381	6.257	0	0	0	21	0	KCNK16	exonic	synonymous_SNV
RCC_T3--8	chr6:39290263	C	NA	22	0	22	66.864	3.720	0	0	0	22	0	KCNK16	exonic	synonymous_SNV
RCC_T3--GL	chr6:39290263	C	NA	35	0	35	62.200	10.355	0	0	0	35	0	KCNK16	exonic	synonymous_SNV
RCC_T3--1	chr6:39864594	T	NA	52	0	52	64.885	7.987	0	0	0	52	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--2	chr6:39864594	T	NA	52	0	52	66.846	4.465	0	0	0	52	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--3	chr6:39864594	T	NA	62	0	62	65.565	8.137	0	0	0	62	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--4	chr6:39864594	T	C	58	0.103	51	68.686	2.867	6	64.167	2.229	51	6	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--5	chr6:39864594	T	NA	53	0	53	63.755	9.944	0	0	0	53	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--6	chr6:39864594	T	NA	55	0	55	65.764	7.569	0	0	0	55	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--7	chr6:39864594	T	NA	63	0	63	66.127	7.081	0	0	0	63	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--8	chr6:39864594	T	NA	63	0	63	66.238	5.838	0	0	0	63	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr6:39864594	T	NA	46	0	46	64.674	8.499	0	0	0	46	0	DAAM2	exonic	nonsynonymous_SNV
RCC_T3--1	chr6:43164306	G	A	52	0.115	46	67.652	3.814	6	65.167	6.306	46	6	CUL9	intronic	NA
RCC_T3--2	chr6:43164306	G	NA	76	0	76	66.539	6.736	0	0	0	76	0	CUL9	intronic	NA
RCC_T3--3	chr6:43164306	G	NA	66	0	66	66.045	6.453	0	0	0	66	0	CUL9	intronic	NA
RCC_T3--4	chr6:43164306	G	NA	70	0	70	66.400	7.008	0	0	0	70	0	CUL9	intronic	NA
RCC_T3--5	chr6:43164306	G	NA	59	0	59	67.034	5.176	0	0	0	59	0	CUL9	intronic	NA
RCC_T3--6	chr6:43164306	G	NA	50	0	50	65.160	7.308	0	0	0	50	0	CUL9	intronic	NA
RCC_T3--7	chr6:43164306	G	NA	60	0	60	65.533	7.098	0	0	0	60	0	CUL9	intronic	NA
RCC_T3--8	chr6:43164306	G	NA	50	0	50	66.340	7.842	0	0	0	50	0	CUL9	intronic	NA
RCC_T3--GL	chr6:43164306	G	NA	81	0	81	64.358	8.598	0	0	0	81	0	CUL9	intronic	NA
RCC_T3--1	chr6:43266633	G	NA	23	0	23	68.174	4.849	0	0	0	23	0	SLC22A7	intronic	NA
RCC_T3--2	chr6:43266633	G	NA	32	0	32	68.031	4.131	0	0	0	32	0	SLC22A7	intronic	NA
RCC_T3--3	chr6:43266633	G	NA	26	0	26	67.423	4.518	0	0	0	26	0	SLC22A7	intronic	NA
RCC_T3--4	chr6:43266633	G	NA	35	0	35	68.486	3.212	0	0	0	35	0	SLC22A7	intronic	NA
RCC_T3--5	chr6:43266633	G	A	20	0.150	17	68.176	4.419	3	62.667	2.082	17	3	SLC22A7	intronic	NA
RCC_T3--6	chr6:43266633	G	NA	24	0	24	67.458	5.453	0	0	0	24	0	SLC22A7	intronic	NA
RCC_T3--7	chr6:43266633	G	NA	37	0	37	67.946	4.533	0	0	0	37	0	SLC22A7	intronic	NA
RCC_T3--8	chr6:43266633	G	NA	50	0	50	68.020	7.153	0	0	0	50	0	SLC22A7	intronic	NA
RCC_T3--GL	chr6:43266633	G	NA	35	0	35	67.971	3.577	0	0	0	35	0	SLC22A7	intronic	NA
RCC_T3--1	chr6:43299588	C	NA	30	0	29	67.655	7.128	0	0	0	29	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--2	chr6:43299588	C	NA	24	0	24	68.917	3.741	0	0	0	24	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--3	chr6:43299588	C	NA	26	0	26	68.077	4.987	0	0	0	26	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--4	chr6:43299588	C	NA	24	0	24	67.167	6.964	0	0	0	24	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--5	chr6:43299588	C	NA	35	0	35	67.943	4.862	0	0	0	35	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--6	chr6:43299588	C	NA	40	0	40	67.475	6.485	0	0	0	40	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--7	chr6:43299588	C	A	32	0.031	31	66.839	6.341	1	55.000	0.000	31	1	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--8	chr6:43299588	C	A	27	0.148	23	66.652	7.649	4	64.250	10.626	23	4	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--GL	chr6:43299588	C	NA	37	0	37	65.297	8.178	0	0	0	37	0	CRIP3(dist=23058),ZNF318(dist=4220)	intergenic	NA
RCC_T3--1	chr6:44227821	G	A	49	0.020	48	67.479	4.681	1	67.000	0.000	48	1	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--2	chr6:44227821	G	NA	79	0	79	66.759	6.877	0	0	0	79	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--3	chr6:44227821	G	A	60	0.017	59	65.814	6.572	1	60.000	0.000	59	1	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--4	chr6:44227821	G	NA	59	0	58	66.431	6.286	0	0	0	58	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--5	chr6:44227821	G	NA	54	0	54	66.648	4.112	0	0	0	54	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--6	chr6:44227821	G	A	53	0.113	47	66.723	3.966	6	65.833	3.312	47	6	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--7	chr6:44227821	G	NA	78	0	78	65.641	7.561	0	0	0	78	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--8	chr6:44227821	G	NA	63	0	63	67.175	3.863	0	0	0	63	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--GL	chr6:44227821	G	NA	70	0	70	66.557	6.940	0	0	0	70	0	NFKBIE	exonic	nonsynonymous_SNV
RCC_T3--1	chr6:53378863	G	T	42	0.024	41	69.341	3.127	1	68.000	0.000	41	1	GCLC	intronic	NA
RCC_T3--2	chr6:53378863	G	T	39	0.154	33	69.030	3.845	6	68.667	1.033	33	6	GCLC	intronic	NA
RCC_T3--3	chr6:53378863	G	T	45	0.022	44	68.250	4.601	1	62.000	0.000	44	1	GCLC	intronic	NA
RCC_T3--4	chr6:53378863	G	T	44	0.045	42	69.143	2.927	2	50.000	24.042	42	2	GCLC	intronic	NA
RCC_T3--5	chr6:53378863	G	T	37	0.027	36	68.861	3.681	1	61.000	0.000	36	1	GCLC	intronic	NA
RCC_T3--6	chr6:53378863	G	T	31	0.032	30	68.967	2.918	1	70.000	0.000	30	1	GCLC	intronic	NA
RCC_T3--7	chr6:53378863	G	T	57	0.035	55	69.109	3.494	2	61.500	6.364	55	2	GCLC	intronic	NA
RCC_T3--8	chr6:53378863	G	T	35	0.029	34	69.706	3.139	1	71.000	0.000	34	1	GCLC	intronic	NA
RCC_T3--GL	chr6:53378863	G	NA	46	0	46	68.783	3.444	0	0	0	46	0	GCLC	intronic	NA
RCC_T3--1	chr6:55923836	T	NA	38	0	38	66.395	4.665	0	0	0	38	0	COL21A1	intronic	NA
RCC_T3--2	chr6:55923836	T	NA	22	0	22	65.636	4.914	0	0	0	22	0	COL21A1	intronic	NA
RCC_T3--3	chr6:55923836	T	NA	31	0	31	62.839	6.325	0	0	0	31	0	COL21A1	intronic	NA
RCC_T3--4	chr6:55923836	T	C	52	0.019	51	65.314	7.229	1	41.000	0.000	51	1	COL21A1	intronic	NA
RCC_T3--5	chr6:55923836	T	C	28	0.143	24	66.500	3.036	4	70.000	0.000	24	4	COL21A1	intronic	NA
RCC_T3--6	chr6:55923836	T	NA	47	0	47	64.681	6.026	0	0	0	47	0	COL21A1	intronic	NA
RCC_T3--7	chr6:55923836	T	NA	36	0	36	62.889	9.199	0	0	0	36	0	COL21A1	intronic	NA
RCC_T3--8	chr6:55923836	T	NA	26	0	26	65.846	4.602	0	0	0	26	0	COL21A1	intronic	NA
RCC_T3--GL	chr6:55923836	T	NA	40	0	40	65.175	6.920	0	0	0	40	0	COL21A1	intronic	NA
RCC_T3--1	chr6:7342644	G	NA	26	0	26	67.769	4.013	0	0	0	26	0	CAGE1	intronic	NA
RCC_T3--2	chr6:7342644	G	NA	24	0	24	67.750	5.101	0	0	0	24	0	CAGE1	intronic	NA
RCC_T3--3	chr6:7342644	G	NA	32	0	32	67.875	3.396	0	0	0	32	0	CAGE1	intronic	NA
RCC_T3--4	chr6:7342644	G	NA	32	0	32	67.062	6.143	0	0	0	32	0	CAGE1	intronic	NA
RCC_T3--5	chr6:7342644	G	T	20	0.150	17	67.882	4.846	3	65.000	1.732	17	3	CAGE1	intronic	NA
RCC_T3--6	chr6:7342644	G	NA	21	0	21	68.381	3.598	0	0	0	21	0	CAGE1	intronic	NA
RCC_T3--7	chr6:7342644	G	NA	21	0	21	65.857	8.338	0	0	0	21	0	CAGE1	intronic	NA
RCC_T3--8	chr6:7342644	G	NA	21	0	21	67.000	8.706	0	0	0	21	0	CAGE1	intronic	NA
RCC_T3--GL	chr6:7342644	G	NA	35	0	35	66.543	7.277	0	0	0	35	0	CAGE1	intronic	NA
RCC_T3--1	chr6:90467988	T	NA	23	0	23	69.652	3.419	0	0	0	23	0	MDN1	exonic	synonymous_SNV
RCC_T3--2	chr6:90467988	T	NA	51	0	51	67.961	6.277	0	0	0	51	0	MDN1	exonic	synonymous_SNV
RCC_T3--3	chr6:90467988	T	NA	35	0	35	67.457	5.431	0	0	0	35	0	MDN1	exonic	synonymous_SNV
RCC_T3--4	chr6:90467988	T	NA	50	0	50	67.740	3.789	0	0	0	50	0	MDN1	exonic	synonymous_SNV
RCC_T3--5	chr6:90467988	T	C	30	0.133	26	65.692	8.029	4	68.250	0.957	26	4	MDN1	exonic	synonymous_SNV
RCC_T3--6	chr6:90467988	T	NA	33	0	33	67.727	3.947	0	0	0	33	0	MDN1	exonic	synonymous_SNV
RCC_T3--7	chr6:90467988	T	NA	44	0	44	68.136	3.670	0	0	0	44	0	MDN1	exonic	synonymous_SNV
RCC_T3--8	chr6:90467988	T	NA	42	0	42	65.381	7.248	0	0	0	42	0	MDN1	exonic	synonymous_SNV
RCC_T3--GL	chr6:90467988	T	NA	39	0	39	67.974	6.385	0	0	0	39	0	MDN1	exonic	synonymous_SNV
RCC_T3--1	chr7:100244456	T	NA	11	0	11	65.727	3.133	0	0	0	11	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--2	chr7:100244456	T	NA	43	0	43	64.279	8.564	0	0	0	43	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--3	chr7:100244456	T	NA	29	0	29	66.414	4.548	0	0	0	29	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--4	chr7:100244456	T	NA	30	0	30	65.367	4.944	0	0	0	30	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--5	chr7:100244456	T	C	36	0.111	32	66.312	4.875	4	65.500	1.000	32	4	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--6	chr7:100244456	T	NA	42	0	42	64.976	7.475	0	0	0	42	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--7	chr7:100244456	T	NA	32	0	32	67.031	3.277	0	0	0	32	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--8	chr7:100244456	T	NA	49	0	49	66.673	3.152	0	0	0	49	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--GL	chr7:100244456	T	NA	35	0	35	64.886	5.161	0	0	0	35	0	ACTL6B(NM_016188:exon12:c.937-2A>G)	splicing	NA
RCC_T3--1	chr7:100392945	T	C	14	0.214	11	64.182	6.765	3	54.667	18.771	11	3	ZAN	exonic	unknown
RCC_T3--2	chr7:100392945	T	NA	18	0	18	64.889	4.651	0	0	0	18	0	ZAN	exonic	unknown
RCC_T3--3	chr7:100392945	T	NA	37	0	37	65.919	5.913	0	0	0	37	0	ZAN	exonic	unknown
RCC_T3--4	chr7:100392945	T	NA	28	0	28	65.179	4.699	0	0	0	28	0	ZAN	exonic	unknown
RCC_T3--5	chr7:100392945	T	NA	35	0	35	61.000	9.994	0	0	0	35	0	ZAN	exonic	unknown
RCC_T3--6	chr7:100392945	T	NA	19	0	19	61.000	9.911	0	0	0	19	0	ZAN	exonic	unknown
RCC_T3--7	chr7:100392945	T	NA	29	0	29	62.103	8.768	0	0	0	29	0	ZAN	exonic	unknown
RCC_T3--8	chr7:100392945	T	NA	44	0	44	63.159	8.482	0	0	0	44	0	ZAN	exonic	unknown
RCC_T3--GL	chr7:100392945	T	NA	52	0	52	63.288	6.396	0	0	0	52	0	ZAN	exonic	unknown
RCC_T3--1	chr7:1024625	G	NA	31	0	30	63.867	6.663	0	0	0	30	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:1024625	G	NA	41	0	40	62.225	9.060	0	0	0	40	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:1024625	G	NA	27	0	27	63.815	7.830	0	0	0	27	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:1024625	G	NA	28	0	28	63.179	7.665	0	0	0	28	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:1024625	G	A	23	0.174	19	63.158	8.119	4	58.250	11.843	19	4	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:1024625	G	NA	42	0	42	59.786	10.050	0	0	0	42	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:1024625	G	NA	40	0	39	62.615	8.028	0	0	0	39	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:1024625	G	NA	48	0	48	63.833	8.418	0	0	0	48	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:1024625	G	NA	37	0	37	62.081	7.410	0	0	0	37	0	CYP2W1	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:103014827	C	NA	40	0	40	67.675	6.646	0	0	0	40	0	SLC26A5	UTR3	NA
RCC_T3--2	chr7:103014827	C	NA	27	0	27	69.000	4.549	0	0	0	27	0	SLC26A5	UTR3	NA
RCC_T3--3	chr7:103014827	C	A	31	0.032	30	66.900	5.403	1	33.000	0.000	30	1	SLC26A5	UTR3	NA
RCC_T3--4	chr7:103014827	C	NA	56	0	56	68.036	4.260	0	0	0	56	0	SLC26A5	UTR3	NA
RCC_T3--5	chr7:103014827	C	NA	26	0	26	65.731	7.805	0	0	0	26	0	SLC26A5	UTR3	NA
RCC_T3--6	chr7:103014827	C	A	37	0.108	33	64.939	9.196	4	69.250	2.217	33	4	SLC26A5	UTR3	NA
RCC_T3--7	chr7:103014827	C	NA	42	0	42	67.738	5.751	0	0	0	42	0	SLC26A5	UTR3	NA
RCC_T3--8	chr7:103014827	C	NA	29	0	29	68.207	3.986	0	0	0	29	0	SLC26A5	UTR3	NA
RCC_T3--GL	chr7:103014827	C	NA	36	0	36	64.250	7.897	0	0	0	36	0	SLC26A5	UTR3	NA
RCC_T3--1	chr7:104753826	G	NA	42	0	42	69.286	3.744	0	0	0	42	0	KMT2E	UTR3	NA
RCC_T3--2	chr7:104753826	G	NA	41	0	41	69.732	2.655	0	0	0	41	0	KMT2E	UTR3	NA
RCC_T3--3	chr7:104753826	G	NA	49	0	49	69.286	3.541	0	0	0	49	0	KMT2E	UTR3	NA
RCC_T3--4	chr7:104753826	G	A	30	0.133	26	68.731	3.054	4	68.500	2.887	26	4	KMT2E	UTR3	NA
RCC_T3--5	chr7:104753826	G	NA	42	0	42	68.714	3.563	0	0	0	42	0	KMT2E	UTR3	NA
RCC_T3--6	chr7:104753826	G	NA	39	0	39	69.103	3.202	0	0	0	39	0	KMT2E	UTR3	NA
RCC_T3--7	chr7:104753826	G	NA	37	0	37	69.162	4.246	0	0	0	37	0	KMT2E	UTR3	NA
RCC_T3--8	chr7:104753826	G	NA	48	0	48	69.021	2.779	0	0	0	48	0	KMT2E	UTR3	NA
RCC_T3--GL	chr7:104753826	G	NA	40	0	40	67.900	7.023	0	0	0	40	0	KMT2E	UTR3	NA
RCC_T3--1	chr7:107684126	G	C	30	0.167	24	67.375	5.072	5	62.600	3.912	24	5	LAMB4	intronic	NA
RCC_T3--2	chr7:107684126	G	NA	49	0	48	65.271	8.264	0	0	0	48	0	LAMB4	intronic	NA
RCC_T3--3	chr7:107684126	G	C	31	0.065	28	62.536	11.283	2	63.000	2.828	28	2	LAMB4	intronic	NA
RCC_T3--4	chr7:107684126	G	C	35	0.057	32	67.656	2.958	2	63.500	2.121	32	2	LAMB4	intronic	NA
RCC_T3--5	chr7:107684126	G	C	27	0.037	26	68.038	3.985	1	62.000	0.000	26	1	LAMB4	intronic	NA
RCC_T3--6	chr7:107684126	G	C	36	0.028	35	64.629	8.701	1	64.000	0.000	35	1	LAMB4	intronic	NA
RCC_T3--7	chr7:107684126	G	C	52	0.077	47	62.830	11.404	4	65.250	0.500	47	4	LAMB4	intronic	NA
RCC_T3--8	chr7:107684126	G	C	41	0.171	33	66.636	7.656	7	64.714	1.380	33	7	LAMB4	intronic	NA
RCC_T3--GL	chr7:107684126	G	NA	40	0	37	64.541	8.767	0	0	0	37	0	LAMB4	intronic	NA
RCC_T3--1	chr7:127222277	C	NA	105	0	105	66.505	6.839	0	0	0	105	0	GCC1	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:127222277	C	T	136	0.022	133	65.677	7.352	3	68.667	5.774	133	3	GCC1	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:127222277	C	NA	135	0	135	64.504	8.616	0	0	0	135	0	GCC1	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:127222277	C	NA	124	0	124	65.919	7.339	0	0	0	124	0	GCC1	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:127222277	C	T	130	0.038	125	65.016	8.378	5	55.000	17.479	125	5	GCC1	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:127222277	C	T	131	0.092	119	63.824	8.681	12	64.083	11.293	119	12	GCC1	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:127222277	C	NA	122	0	122	65.426	6.842	0	0	0	122	0	GCC1	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:127222277	C	T	128	0.156	108	64.352	8.778	20	66.000	3.598	108	20	GCC1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:127222277	C	NA	125	0	125	65.056	7.438	0	0	0	125	0	GCC1	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:128096573	C	NA	30	0	30	67.333	4.852	0	0	0	30	0	HILPDA	intronic	NA
RCC_T3--2	chr7:128096573	C	NA	31	0	31	69.000	3.120	0	0	0	31	0	HILPDA	intronic	NA
RCC_T3--3	chr7:128096573	C	A	37	0.027	35	67.857	4.493	1	39.000	0.000	35	1	HILPDA	intronic	NA
RCC_T3--4	chr7:128096573	C	NA	41	0	41	67.585	4.147	0	0	0	41	0	HILPDA	intronic	NA
RCC_T3--5	chr7:128096573	C	A	32	0.125	28	64.036	9.705	4	68.250	3.202	28	4	HILPDA	intronic	NA
RCC_T3--6	chr7:128096573	C	NA	37	0	37	66.324	7.067	0	0	0	37	0	HILPDA	intronic	NA
RCC_T3--7	chr7:128096573	C	NA	34	0	34	67.765	3.163	0	0	0	34	0	HILPDA	intronic	NA
RCC_T3--8	chr7:128096573	C	NA	32	0	32	68.875	2.756	0	0	0	32	0	HILPDA	intronic	NA
RCC_T3--GL	chr7:128096573	C	NA	37	0	37	66.189	7.961	0	0	0	37	0	HILPDA	intronic	NA
RCC_T3--1	chr7:134814482	C	NA	42	0	42	69.810	3.187	0	0	0	42	0	AGBL3	intronic	NA
RCC_T3--2	chr7:134814482	C	NA	53	0	53	67.113	4.964	0	0	0	53	0	AGBL3	intronic	NA
RCC_T3--3	chr7:134814482	C	NA	69	0	69	68.725	3.412	0	0	0	69	0	AGBL3	intronic	NA
RCC_T3--4	chr7:134814482	C	NA	53	0	53	68.717	4.148	0	0	0	53	0	AGBL3	intronic	NA
RCC_T3--5	chr7:134814482	C	A	26	0.154	22	68.909	3.951	4	69.250	2.500	22	4	AGBL3	intronic	NA
RCC_T3--6	chr7:134814482	C	NA	59	0	59	66.169	7.548	0	0	0	59	0	AGBL3	intronic	NA
RCC_T3--7	chr7:134814482	C	NA	55	0	55	68.109	5.083	0	0	0	55	0	AGBL3	intronic	NA
RCC_T3--8	chr7:134814482	C	NA	80	0	80	68.000	5.301	0	0	0	80	0	AGBL3	intronic	NA
RCC_T3--GL	chr7:134814482	C	NA	42	0	42	67.595	4.701	0	0	0	42	0	AGBL3	intronic	NA
RCC_T3--1	chr7:150209833	C	T	86	0.128	75	67.893	4.772	11	61.636	11.165	75	11	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--2	chr7:150209833	C	T	127	0.181	104	67.058	6.761	23	66.870	3.865	104	23	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--3	chr7:150209833	C	T	180	0.239	137	66.818	6.431	43	62.116	12.162	137	43	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--4	chr7:150209833	C	T	118	0.220	92	67.293	6.888	26	67.692	5.904	92	26	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--5	chr7:150209833	C	T	135	0.037	130	65.685	7.282	5	67.000	1.871	130	5	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--6	chr7:150209833	C	T	119	0.101	107	66.364	6.654	12	69.417	3.147	107	12	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--7	chr7:150209833	C	T	167	0.210	130	66.692	5.704	35	67.543	5.878	130	35	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--8	chr7:150209833	C	T	109	0.165	91	66.967	5.508	18	65.056	9.162	91	18	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--GL	chr7:150209833	C	NA	117	0	117	66.940	5.066	0	0	0	117	0	GIMAP8(dist=33350),GIMAP7(dist=2112)	intergenic	NA
RCC_T3--1	chr7:150554525	A	G	20	0.150	17	61.294	11.878	3	33.000	0.000	17	3	AOC1	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:150554525	A	G	27	0.222	21	62.333	9.404	6	38.167	12.656	21	6	AOC1	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:150554525	A	G	33	0.061	31	57.516	12.562	2	35.500	3.536	31	2	AOC1	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:150554525	A	G	32	0.062	30	54.767	13.500	2	33.000	0.000	30	2	AOC1	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:150554525	A	G	15	0.067	14	55.571	14.939	1	33.000	0.000	14	1	AOC1	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:150554525	A	G	21	0.143	18	54.611	11.459	3	33.000	0.000	18	3	AOC1	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:150554525	A	G	47	0.106	42	55.548	12.500	5	33.000	0.000	42	5	AOC1	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:150554525	A	G	32	0.125	28	58.607	11.657	4	34.250	2.500	28	4	AOC1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:150554525	A	NA	33	0	33	56.636	12.579	0	0	0	33	0	AOC1	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:150720562	C	NA	14	0	14	66.071	3.931	0	0	0	14	0	ATG9B	exonic	unknown
RCC_T3--2	chr7:150720562	C	NA	24	0	24	67.292	8.217	0	0	0	24	0	ATG9B	exonic	unknown
RCC_T3--3	chr7:150720562	C	NA	45	0	45	63.978	8.612	0	0	0	45	0	ATG9B	exonic	unknown
RCC_T3--4	chr7:150720562	C	NA	18	0	18	66.722	2.445	0	0	0	18	0	ATG9B	exonic	unknown
RCC_T3--5	chr7:150720562	C	NA	10	0	10	65.200	11.840	0	0	0	10	0	ATG9B	exonic	unknown
RCC_T3--6	chr7:150720562	C	NA	22	0	22	66.545	3.776	0	0	0	22	0	ATG9B	exonic	unknown
RCC_T3--7	chr7:150720562	C	A	27	0.148	23	65.348	6.235	4	62.750	4.272	23	4	ATG9B	exonic	unknown
RCC_T3--8	chr7:150720562	C	NA	30	0	30	67.300	3.525	0	0	0	30	0	ATG9B	exonic	unknown
RCC_T3--GL	chr7:150720562	C	NA	35	0	35	65.029	4.967	0	0	0	35	0	ATG9B	exonic	unknown
RCC_T3--1	chr7:150774868	C	A	31	0.129	27	60.852	11.611	4	66.000	4.546	27	4	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--2	chr7:150774868	C	NA	28	0	28	64.071	5.517	0	0	0	28	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--3	chr7:150774868	C	NA	23	0	23	64.348	7.929	0	0	0	23	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--4	chr7:150774868	C	NA	27	0	27	65.667	4.804	0	0	0	27	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--5	chr7:150774868	C	NA	33	0	33	62.303	10.079	0	0	0	33	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--6	chr7:150774868	C	NA	27	0	27	63.185	9.560	0	0	0	27	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--7	chr7:150774868	C	NA	40	0	40	63.450	9.578	0	0	0	40	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--8	chr7:150774868	C	NA	27	0	27	64.333	7.421	0	0	0	27	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--GL	chr7:150774868	C	NA	37	0	37	61.973	9.926	0	0	0	37	0	FASTK(NM_033015:exon6:c.617-1G>T,NM_006712:exon7:c.1040-1G>T,NM_001258461:exon7:c.959-1G>T)	splicing	NA
RCC_T3--1	chr7:151791265	T	C	253	0.209	200	69.125	3.438	53	68.981	3.603	200	53	GALNT11	intronic	NA
RCC_T3--2	chr7:151791265	T	C	300	0.297	210	69.062	3.325	89	67.955	5.145	210	89	GALNT11	intronic	NA
RCC_T3--3	chr7:151791265	T	C	346	0.234	265	68.747	4.589	81	69.259	3.924	265	81	GALNT11	intronic	NA
RCC_T3--4	chr7:151791265	T	C	325	0.209	257	69.265	4.068	68	69.103	4.838	257	68	GALNT11	intronic	NA
RCC_T3--5	chr7:151791265	T	C	230	0.039	221	68.516	4.210	9	69.000	2.345	221	9	GALNT11	intronic	NA
RCC_T3--6	chr7:151791265	T	C	294	0.105	263	68.650	3.664	31	66.903	5.671	263	31	GALNT11	intronic	NA
RCC_T3--7	chr7:151791265	T	C	322	0.252	241	68.838	4.583	81	68.395	3.885	241	81	GALNT11	intronic	NA
RCC_T3--8	chr7:151791265	T	C	323	0.232	248	68.649	3.864	75	69.067	3.334	248	75	GALNT11	intronic	NA
RCC_T3--GL	chr7:151791265	T	NA	320	0	320	68.384	4.759	0	0	0	320	0	GALNT11	intronic	NA
RCC_T3--1	chr7:154860818	G	A	34	0.176	28	69.286	2.507	6	67.833	2.483	28	6	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--2	chr7:154860818	G	NA	43	0	43	69.558	3.018	0	0	0	43	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--3	chr7:154860818	G	NA	38	0	38	67.895	5.540	0	0	0	38	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--4	chr7:154860818	G	NA	37	0	37	67.405	6.853	0	0	0	37	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--5	chr7:154860818	G	NA	26	0	26	66.769	7.533	0	0	0	26	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--6	chr7:154860818	G	NA	30	0	30	68.033	3.700	0	0	0	30	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--7	chr7:154860818	G	NA	49	0	49	69.224	3.543	0	0	0	49	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--8	chr7:154860818	G	NA	39	0	39	66.282	9.835	0	0	0	39	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--GL	chr7:154860818	G	NA	37	0	37	68.459	3.437	0	0	0	37	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T3--1	chr7:30472780	T	NA	86	0	85	67.200	5.968	0	0	0	85	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:30472780	T	G	139	0.022	136	67.324	5.165	3	64.000	8.185	136	3	NOD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:30472780	T	NA	144	0	144	67.292	6.374	0	0	0	144	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:30472780	T	NA	146	0	146	67.370	5.125	0	0	0	146	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:30472780	T	G	116	0.034	112	66.491	5.650	4	69.250	2.500	112	4	NOD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:30472780	T	G	131	0.076	121	64.983	7.209	10	61.900	13.017	121	10	NOD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:30472780	T	G	133	0.008	132	66.303	7.628	1	39.000	0.000	132	1	NOD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:30472780	T	G	146	0.151	124	65.944	6.452	22	68.545	5.152	124	22	NOD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:30472780	T	NA	119	0	119	66.277	7.070	0	0	0	119	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:30472782	C	NA	83	0	83	68.386	5.101	0	0	0	83	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:30472782	C	T	139	0.022	136	68.029	4.823	3	60.667	8.505	136	3	NOD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:30472782	C	NA	143	0	143	67.706	5.214	0	0	0	143	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:30472782	C	NA	145	0	145	68.000	4.535	0	0	0	145	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:30472782	C	T	114	0.035	110	66.636	5.406	4	68.500	3.697	110	4	NOD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:30472782	C	T	129	0.070	120	66.183	6.509	9	67.444	4.333	120	9	NOD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:30472782	C	NA	134	0	134	66.918	6.441	0	0	0	134	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:30472782	C	T	143	0.154	121	66.702	6.080	22	67.909	2.877	121	22	NOD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:30472782	C	NA	118	0	118	67.102	6.328	0	0	0	118	0	NOD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:32663064	C	NA	34	0	34	68.088	4.309	0	0	0	34	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--2	chr7:32663064	C	A	42	0.119	37	68.216	3.917	5	60.200	15.482	37	5	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--3	chr7:32663064	C	NA	70	0	70	68.529	4.103	0	0	0	70	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--4	chr7:32663064	C	NA	48	0	48	67.833	5.544	0	0	0	48	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--5	chr7:32663064	C	NA	33	0	33	68.273	3.085	0	0	0	33	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--6	chr7:32663064	C	NA	36	0	36	67.917	3.442	0	0	0	36	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--7	chr7:32663064	C	NA	39	0	39	67.564	6.793	0	0	0	39	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--8	chr7:32663064	C	NA	43	0	43	65.140	7.788	0	0	0	43	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--GL	chr7:32663064	C	NA	62	0	62	66.774	3.961	0	0	0	62	0	DPY19L1P1	ncRNA_intronic	NA
RCC_T3--1	chr7:43959251	C	NA	38	0	38	63.500	8.532	0	0	0	38	0	URGCP	intronic	NA
RCC_T3--2	chr7:43959251	C	NA	46	0	46	65.522	4.642	0	0	0	46	0	URGCP	intronic	NA
RCC_T3--3	chr7:43959251	C	T	45	0.156	38	61.895	10.224	7	59.857	11.978	38	7	URGCP	intronic	NA
RCC_T3--4	chr7:43959251	C	NA	59	0	59	64.559	8.031	0	0	0	59	0	URGCP	intronic	NA
RCC_T3--5	chr7:43959251	C	NA	34	0	34	63.235	8.825	0	0	0	34	0	URGCP	intronic	NA
RCC_T3--6	chr7:43959251	C	NA	36	0	36	61.861	6.397	0	0	0	36	0	URGCP	intronic	NA
RCC_T3--7	chr7:43959251	C	NA	45	0	45	63.733	7.303	0	0	0	45	0	URGCP	intronic	NA
RCC_T3--8	chr7:43959251	C	NA	48	0	48	64.667	7.566	0	0	0	48	0	URGCP	intronic	NA
RCC_T3--GL	chr7:43959251	C	NA	43	0	43	62.488	9.417	0	0	0	43	0	URGCP	intronic	NA
RCC_T3--1	chr7:43982728	G	NA	28	0	28	67.536	6.658	0	0	0	28	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--2	chr7:43982728	G	NA	29	0	29	66.828	7.271	0	0	0	29	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--3	chr7:43982728	G	NA	19	0	19	67.842	3.905	0	0	0	19	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--4	chr7:43982728	G	NA	39	0	39	67.949	4.947	0	0	0	39	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--5	chr7:43982728	G	T	33	0.121	29	66.621	5.949	4	68.000	3.464	29	4	POLR2J4	ncRNA_exonic	NA
RCC_T3--6	chr7:43982728	G	NA	32	0	32	65.844	5.484	0	0	0	32	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--7	chr7:43982728	G	NA	37	0	37	67.108	6.181	0	0	0	37	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--8	chr7:43982728	G	NA	40	0	40	67.300	4.052	0	0	0	40	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--GL	chr7:43982728	G	NA	41	0	41	66.366	6.061	0	0	0	41	0	POLR2J4	ncRNA_exonic	NA
RCC_T3--1	chr7:44621311	G	NA	30	0	30	66.667	3.689	0	0	0	30	0	TMED4	intronic	NA
RCC_T3--2	chr7:44621311	G	NA	42	0	42	63.524	6.922	0	0	0	42	0	TMED4	intronic	NA
RCC_T3--3	chr7:44621311	G	NA	47	0	47	64.064	7.391	0	0	0	47	0	TMED4	intronic	NA
RCC_T3--4	chr7:44621311	G	NA	42	0	42	65.833	4.184	0	0	0	42	0	TMED4	intronic	NA
RCC_T3--5	chr7:44621311	G	NA	33	0	33	63.152	10.305	0	0	0	33	0	TMED4	intronic	NA
RCC_T3--6	chr7:44621311	G	NA	54	0	54	65.815	4.430	0	0	0	54	0	TMED4	intronic	NA
RCC_T3--7	chr7:44621311	G	A	46	0.109	40	63.675	8.511	5	55.600	11.845	40	5	TMED4	intronic	NA
RCC_T3--8	chr7:44621311	G	NA	45	0	45	62.800	8.797	0	0	0	45	0	TMED4	intronic	NA
RCC_T3--GL	chr7:44621311	G	NA	58	0	58	64.379	6.026	0	0	0	58	0	TMED4	intronic	NA
RCC_T3--1	chr7:44804634	T	NA	35	0	35	65.857	8.034	0	0	0	35	0	ZMIZ2	intronic	NA
RCC_T3--2	chr7:44804634	T	NA	54	0	54	65.574	6.392	0	0	0	54	0	ZMIZ2	intronic	NA
RCC_T3--3	chr7:44804634	T	NA	36	0	36	65.722	7.497	0	0	0	36	0	ZMIZ2	intronic	NA
RCC_T3--4	chr7:44804634	T	NA	29	0	29	65.828	8.005	0	0	0	29	0	ZMIZ2	intronic	NA
RCC_T3--5	chr7:44804634	T	NA	44	0	44	66.182	6.979	0	0	0	44	0	ZMIZ2	intronic	NA
RCC_T3--6	chr7:44804634	T	A	33	0.121	29	67.483	7.689	4	68.500	2.646	29	4	ZMIZ2	intronic	NA
RCC_T3--7	chr7:44804634	T	NA	42	0	42	65.595	6.375	0	0	0	42	0	ZMIZ2	intronic	NA
RCC_T3--8	chr7:44804634	T	NA	34	0	34	66.706	5.397	0	0	0	34	0	ZMIZ2	intronic	NA
RCC_T3--GL	chr7:44804634	T	NA	54	0	54	63.241	8.782	0	0	0	54	0	ZMIZ2	intronic	NA
RCC_T3--1	chr7:45009522	A	NA	31	0	31	60.032	11.698	0	0	0	31	0	MYO1G	intronic	NA
RCC_T3--2	chr7:45009522	A	NA	37	0	37	62.676	9.437	0	0	0	37	0	MYO1G	intronic	NA
RCC_T3--3	chr7:45009522	A	C	36	0.139	31	59.387	10.766	5	37.600	3.050	31	5	MYO1G	intronic	NA
RCC_T3--4	chr7:45009522	A	C	46	0.087	42	60.405	11.419	4	39.250	8.016	42	4	MYO1G	intronic	NA
RCC_T3--5	chr7:45009522	A	C	30	0.067	28	57.250	10.323	2	44.000	9.899	28	2	MYO1G	intronic	NA
RCC_T3--6	chr7:45009522	A	C	33	0.061	30	60.733	9.847	2	33.000	0.000	30	2	MYO1G	intronic	NA
RCC_T3--7	chr7:45009522	A	C	42	0.024	41	55.732	11.149	1	36.000	0.000	41	1	MYO1G	intronic	NA
RCC_T3--8	chr7:45009522	A	C	18	0.222	14	60.071	10.637	4	35.500	1.732	14	4	MYO1G	intronic	NA
RCC_T3--GL	chr7:45009522	A	NA	33	0	33	62.030	10.913	0	0	0	33	0	MYO1G	intronic	NA
RCC_T3--1	chr7:64166294	C	NA	36	0	36	66.833	6.939	0	0	0	36	0	ZNF107	intronic	NA
RCC_T3--2	chr7:64166294	C	NA	38	0	38	67.553	5.972	0	0	0	38	0	ZNF107	intronic	NA
RCC_T3--3	chr7:64166294	C	NA	46	0	46	66.652	7.537	0	0	0	46	0	ZNF107	intronic	NA
RCC_T3--4	chr7:64166294	C	A	31	0.032	30	67.033	7.337	1	33.000	0.000	30	1	ZNF107	intronic	NA
RCC_T3--5	chr7:64166294	C	NA	29	0	29	65.069	9.621	0	0	0	29	0	ZNF107	intronic	NA
RCC_T3--6	chr7:64166294	C	NA	32	0	32	64.906	10.795	0	0	0	32	0	ZNF107	intronic	NA
RCC_T3--7	chr7:64166294	C	A	32	0.125	28	69.071	3.185	4	65.000	2.582	28	4	ZNF107	intronic	NA
RCC_T3--8	chr7:64166294	C	NA	37	0	37	67.243	6.529	0	0	0	37	0	ZNF107	intronic	NA
RCC_T3--GL	chr7:64166294	C	NA	36	0	36	63.639	8.553	0	0	0	36	0	ZNF107	intronic	NA
RCC_T3--1	chr7:65439209	C	NA	24	0	24	65.833	4.459	0	0	0	24	0	GUSB	intronic	NA
RCC_T3--2	chr7:65439209	C	NA	44	0	44	63.932	10.473	0	0	0	44	0	GUSB	intronic	NA
RCC_T3--3	chr7:65439209	C	NA	35	0	35	65.000	6.752	0	0	0	35	0	GUSB	intronic	NA
RCC_T3--4	chr7:65439209	C	NA	30	0	30	66.533	4.083	0	0	0	30	0	GUSB	intronic	NA
RCC_T3--5	chr7:65439209	C	NA	29	0	29	65.655	5.094	0	0	0	29	0	GUSB	intronic	NA
RCC_T3--6	chr7:65439209	C	NA	29	0	29	64.621	9.799	0	0	0	29	0	GUSB	intronic	NA
RCC_T3--7	chr7:65439209	C	NA	39	0	39	65.513	4.801	0	0	0	39	0	GUSB	intronic	NA
RCC_T3--8	chr7:65439209	C	A	48	0.167	40	65.200	8.600	8	62.875	3.482	40	8	GUSB	intronic	NA
RCC_T3--GL	chr7:65439209	C	NA	42	0	42	64.952	6.750	0	0	0	42	0	GUSB	intronic	NA
RCC_T3--1	chr7:72988696	C	NA	29	0	29	68.138	5.623	0	0	0	29	0	TBL2	intronic	NA
RCC_T3--2	chr7:72988696	C	NA	50	0	50	66.340	5.282	0	0	0	50	0	TBL2	intronic	NA
RCC_T3--3	chr7:72988696	C	NA	45	0	45	65.400	8.640	0	0	0	45	0	TBL2	intronic	NA
RCC_T3--4	chr7:72988696	C	NA	28	0	28	66.179	7.513	0	0	0	28	0	TBL2	intronic	NA
RCC_T3--5	chr7:72988696	C	A	26	0.154	22	68.091	5.070	4	61.750	3.948	22	4	TBL2	intronic	NA
RCC_T3--6	chr7:72988696	C	NA	27	0	27	65.704	7.941	0	0	0	27	0	TBL2	intronic	NA
RCC_T3--7	chr7:72988696	C	NA	30	0	29	66.966	7.331	0	0	0	29	0	TBL2	intronic	NA
RCC_T3--8	chr7:72988696	C	NA	38	0	37	67.162	4.233	0	0	0	37	0	TBL2	intronic	NA
RCC_T3--GL	chr7:72988696	C	NA	60	0	60	66.700	5.846	0	0	0	60	0	TBL2	intronic	NA
RCC_T3--1	chr7:73459672	C	NA	21	0	21	67.429	3.655	0	0	0	21	0	ELN	intronic	NA
RCC_T3--2	chr7:73459672	C	NA	23	0	23	67.043	3.496	0	0	0	23	0	ELN	intronic	NA
RCC_T3--3	chr7:73459672	C	NA	25	0	25	67.840	3.532	0	0	0	25	0	ELN	intronic	NA
RCC_T3--4	chr7:73459672	C	NA	21	0	21	66.857	3.838	0	0	0	21	0	ELN	intronic	NA
RCC_T3--5	chr7:73459672	C	A	17	0.235	13	63.615	10.813	4	65.000	1.155	13	4	ELN	intronic	NA
RCC_T3--6	chr7:73459672	C	NA	17	0	17	65.588	5.421	0	0	0	17	0	ELN	intronic	NA
RCC_T3--7	chr7:73459672	C	NA	21	0	21	64.238	11.108	0	0	0	21	0	ELN	intronic	NA
RCC_T3--8	chr7:73459672	C	NA	19	0	19	67.105	4.446	0	0	0	19	0	ELN	intronic	NA
RCC_T3--GL	chr7:73459672	C	NA	36	0	36	65.361	5.929	0	0	0	36	0	ELN	intronic	NA
RCC_T3--1	chr7:73634486	G	NA	19	0	19	61.895	8.041	0	0	0	19	0	LAT2	intronic	NA
RCC_T3--2	chr7:73634486	G	NA	21	0	21	61.286	10.105	0	0	0	21	0	LAT2	intronic	NA
RCC_T3--3	chr7:73634486	G	NA	25	0	25	61.800	7.483	0	0	0	25	0	LAT2	intronic	NA
RCC_T3--4	chr7:73634486	G	T	17	0.176	14	62.357	4.955	3	63.333	2.082	14	3	LAT2	intronic	NA
RCC_T3--5	chr7:73634486	G	NA	21	0	21	64.667	3.215	0	0	0	21	0	LAT2	intronic	NA
RCC_T3--6	chr7:73634486	G	NA	16	0	16	64.875	1.708	0	0	0	16	0	LAT2	intronic	NA
RCC_T3--7	chr7:73634486	G	NA	22	0	22	62.227	9.018	0	0	0	22	0	LAT2	intronic	NA
RCC_T3--8	chr7:73634486	G	NA	38	0	38	64.105	4.596	0	0	0	38	0	LAT2	intronic	NA
RCC_T3--GL	chr7:73634486	G	NA	43	0	43	62.209	6.603	0	0	0	43	0	LAT2	intronic	NA
RCC_T3--1	chr7:75183723	C	NA	35	0	35	66.286	5.665	0	0	0	35	0	HIP1	intronic	NA
RCC_T3--2	chr7:75183723	C	NA	42	0	42	67.381	6.168	0	0	0	42	0	HIP1	intronic	NA
RCC_T3--3	chr7:75183723	C	A	45	0.022	44	65.977	7.581	1	38.000	0.000	44	1	HIP1	intronic	NA
RCC_T3--4	chr7:75183723	C	NA	29	0	29	67.793	4.539	0	0	0	29	0	HIP1	intronic	NA
RCC_T3--5	chr7:75183723	C	A	39	0.128	34	66.647	7.223	5	55.000	9.695	34	5	HIP1	intronic	NA
RCC_T3--6	chr7:75183723	C	NA	49	0	49	63.163	8.586	0	0	0	49	0	HIP1	intronic	NA
RCC_T3--7	chr7:75183723	C	NA	24	0	24	68.000	2.588	0	0	0	24	0	HIP1	intronic	NA
RCC_T3--8	chr7:75183723	C	NA	37	0	37	66.541	4.604	0	0	0	37	0	HIP1	intronic	NA
RCC_T3--GL	chr7:75183723	C	NA	39	0	39	66.205	3.915	0	0	0	39	0	HIP1	intronic	NA
RCC_T3--1	chr7:75191586	A	NA	26	0	26	64.308	5.432	0	0	0	26	0	HIP1	intronic	NA
RCC_T3--2	chr7:75191586	A	NA	29	0	29	64.172	6.176	0	0	0	29	0	HIP1	intronic	NA
RCC_T3--3	chr7:75191586	A	NA	36	0	35	63.143	5.937	0	0	0	35	0	HIP1	intronic	NA
RCC_T3--4	chr7:75191586	A	NA	29	0	28	64.321	5.410	0	0	0	28	0	HIP1	intronic	NA
RCC_T3--5	chr7:75191586	A	NA	19	0	19	62.000	8.246	0	0	0	19	0	HIP1	intronic	NA
RCC_T3--6	chr7:75191586	A	T	13	0.231	10	64.700	3.653	3	40.000	1.732	10	3	HIP1	intronic	NA
RCC_T3--7	chr7:75191586	A	NA	31	0	31	62.839	7.198	0	0	0	31	0	HIP1	intronic	NA
RCC_T3--8	chr7:75191586	A	NA	24	0	24	62.333	4.584	0	0	0	24	0	HIP1	intronic	NA
RCC_T3--GL	chr7:75191586	A	NA	52	0	51	61.588	8.305	0	0	0	51	0	HIP1	intronic	NA
RCC_T3--1	chr7:76610370	C	NA	36	0	36	63.139	9.040	0	0	0	36	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--2	chr7:76610370	C	NA	39	0	39	62.231	12.629	0	0	0	39	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--3	chr7:76610370	C	NA	62	0	62	65.145	6.753	0	0	0	62	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--4	chr7:76610370	C	NA	63	0	63	63.476	10.209	0	0	0	63	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--5	chr7:76610370	C	NA	39	0	39	63.333	8.818	0	0	0	39	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--6	chr7:76610370	C	NA	43	0	43	61.884	10.550	0	0	0	43	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--7	chr7:76610370	C	NA	47	0	47	62.043	9.406	0	0	0	47	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--8	chr7:76610370	C	A	56	0.125	49	65.755	6.921	7	62.286	13.326	49	7	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--GL	chr7:76610370	C	NA	64	0	64	62.562	11.098	0	0	0	64	0	DTX2P1-UPK3BP1-PMS2P11	ncRNA_exonic	NA
RCC_T3--1	chr7:78116220	G	NA	62	0	62	66.065	7.794	0	0	0	62	0	MAGI2	intronic	NA
RCC_T3--2	chr7:78116220	G	NA	68	0	68	67.235	6.008	0	0	0	68	0	MAGI2	intronic	NA
RCC_T3--3	chr7:78116220	G	A	70	0.014	69	66.043	7.591	1	42.000	0.000	69	1	MAGI2	intronic	NA
RCC_T3--4	chr7:78116220	G	NA	57	0	57	66.965	4.667	0	0	0	57	0	MAGI2	intronic	NA
RCC_T3--5	chr7:78116220	G	NA	70	0	70	65.857	7.507	0	0	0	70	0	MAGI2	intronic	NA
RCC_T3--6	chr7:78116220	G	NA	58	0	58	66.379	5.706	0	0	0	58	0	MAGI2	intronic	NA
RCC_T3--7	chr7:78116220	G	NA	58	0	58	65.845	8.280	0	0	0	58	0	MAGI2	intronic	NA
RCC_T3--8	chr7:78116220	G	A	61	0.115	53	67.566	5.672	7	65.000	4.123	53	7	MAGI2	intronic	NA
RCC_T3--GL	chr7:78116220	G	NA	55	0	54	64.815	7.323	0	0	0	54	0	MAGI2	intronic	NA
RCC_T3--1	chr7:92764111	C	NA	329	0	329	68.261	5.545	0	0	0	329	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:92764111	C	T	420	0.152	356	68.857	3.725	64	68.672	3.353	356	64	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:92764111	C	NA	482	0	481	68.189	5.242	0	0	0	481	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:92764111	C	T	383	0.003	382	68.814	4.142	1	65.000	0.000	382	1	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:92764111	C	NA	350	0	350	67.820	5.401	0	0	0	350	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:92764111	C	NA	381	0	381	67.677	6.316	0	0	0	381	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:92764111	C	NA	490	0	490	68.796	5.117	0	0	0	490	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:92764111	C	NA	397	0	397	68.327	5.901	0	0	0	397	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:92764111	C	NA	431	0	431	67.691	5.782	0	0	0	431	0	SAMD9L	exonic	nonsynonymous_SNV
RCC_T3--1	chr7:97872797	A	NA	30	0	30	67.233	5.083	0	0	0	30	0	TECPR1	exonic	synonymous_SNV
RCC_T3--2	chr7:97872797	A	NA	57	0	57	65.088	7.381	0	0	0	57	0	TECPR1	exonic	synonymous_SNV
RCC_T3--3	chr7:97872797	A	NA	43	0	43	65.512	6.555	0	0	0	43	0	TECPR1	exonic	synonymous_SNV
RCC_T3--4	chr7:97872797	A	NA	33	0	33	67.091	3.521	0	0	0	33	0	TECPR1	exonic	synonymous_SNV
RCC_T3--5	chr7:97872797	A	NA	43	0	43	65.558	4.920	0	0	0	43	0	TECPR1	exonic	synonymous_SNV
RCC_T3--6	chr7:97872797	A	NA	38	0	38	63.421	9.322	0	0	0	38	0	TECPR1	exonic	synonymous_SNV
RCC_T3--7	chr7:97872797	A	NA	53	0	53	66.547	3.915	0	0	0	53	0	TECPR1	exonic	synonymous_SNV
RCC_T3--8	chr7:97872797	A	G	50	0.120	44	66.818	3.961	6	63.833	3.488	44	6	TECPR1	exonic	synonymous_SNV
RCC_T3--GL	chr7:97872797	A	NA	58	0	58	63.724	9.936	0	0	0	58	0	TECPR1	exonic	synonymous_SNV
RCC_T3--1	chr7:98985800	G	NA	30	0	30	65.467	4.666	0	0	0	30	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--2	chr7:98985800	G	NA	45	0	45	66.044	5.958	0	0	0	45	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--3	chr7:98985800	G	NA	64	0	64	61.812	10.400	0	0	0	64	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--4	chr7:98985800	G	NA	44	0	44	64.341	6.299	0	0	0	44	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--5	chr7:98985800	G	NA	29	0	29	64.414	7.114	0	0	0	29	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--6	chr7:98985800	G	NA	36	0	36	65.028	5.380	0	0	0	36	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--7	chr7:98985800	G	A	59	0.119	52	64.250	7.393	7	55.571	13.722	52	7	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--8	chr7:98985800	G	NA	49	0	49	63.776	8.081	0	0	0	49	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr7:98985800	G	NA	63	0	63	63.492	9.339	0	0	0	63	0	ARPC1B	exonic	nonsynonymous_SNV
RCC_T3--1	chr8:10480644	C	NA	39	0	38	59.395	10.047	0	0	0	38	0	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--2	chr8:10480644	C	NA	51	0	48	55.354	12.172	0	0	0	48	0	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--3	chr8:10480644	C	NA	46	0	45	56.200	10.494	0	0	0	45	0	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--4	chr8:10480644	C	T	31	0.032	30	59.567	10.305	1	65.000	0.000	30	1	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--5	chr8:10480644	C	NA	45	0	45	55.200	11.923	0	0	0	45	0	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--6	chr8:10480644	C	T	44	0.023	42	57.976	11.206	1	62.000	0.000	42	1	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--7	chr8:10480644	C	T	48	0.021	46	54.587	13.450	1	42.000	0.000	46	1	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--8	chr8:10480644	C	T	32	0.125	28	55.607	10.454	4	57.000	10.033	28	4	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr8:10480644	C	NA	34	0	33	57.333	11.084	0	0	0	33	0	RP1L1	exonic	nonsynonymous_SNV
RCC_T3--1	chr8:120844845	G	A	44	0.318	30	66.233	5.679	14	68.000	3.922	30	14	TAF2	UTR5	NA
RCC_T3--2	chr8:120844845	G	A	38	0.316	26	68.385	3.545	12	63.917	10.917	26	12	TAF2	UTR5	NA
RCC_T3--3	chr8:120844845	G	A	52	0.269	38	65.053	9.224	14	69.786	2.007	38	14	TAF2	UTR5	NA
RCC_T3--4	chr8:120844845	G	A	47	0.362	30	68.333	4.574	17	66.412	3.501	30	17	TAF2	UTR5	NA
RCC_T3--5	chr8:120844845	G	NA	33	0	33	66.152	5.896	0	0	0	33	0	TAF2	UTR5	NA
RCC_T3--6	chr8:120844845	G	A	59	0.034	56	66.554	6.766	2	68.500	4.950	56	2	TAF2	UTR5	NA
RCC_T3--7	chr8:120844845	G	A	49	0.388	30	68.167	5.004	19	66.684	5.239	30	19	TAF2	UTR5	NA
RCC_T3--8	chr8:120844845	G	A	66	0.091	60	65.783	6.965	6	68.333	2.422	60	6	TAF2	UTR5	NA
RCC_T3--GL	chr8:120844845	G	NA	65	0	65	64.692	7.487	0	0	0	65	0	TAF2	UTR5	NA
RCC_T3--1	chr8:121328264	A	NA	31	0	31	67.774	3.095	0	0	0	31	0	COL14A1	intronic	NA
RCC_T3--2	chr8:121328264	A	NA	45	0	45	67.333	4.028	0	0	0	45	0	COL14A1	intronic	NA
RCC_T3--3	chr8:121328264	A	NA	38	0	38	67.342	4.082	0	0	0	38	0	COL14A1	intronic	NA
RCC_T3--4	chr8:121328264	A	NA	32	0	32	67.844	2.749	0	0	0	32	0	COL14A1	intronic	NA
RCC_T3--5	chr8:121328264	A	G	36	0.111	32	66.938	7.492	4	65.750	7.544	32	4	COL14A1	intronic	NA
RCC_T3--6	chr8:121328264	A	NA	30	0	30	68.300	3.282	0	0	0	30	0	COL14A1	intronic	NA
RCC_T3--7	chr8:121328264	A	NA	42	0	42	68.333	4.269	0	0	0	42	0	COL14A1	intronic	NA
RCC_T3--8	chr8:121328264	A	NA	40	0	40	68.425	3.644	0	0	0	40	0	COL14A1	intronic	NA
RCC_T3--GL	chr8:121328264	A	NA	36	0	36	67.056	6.383	0	0	0	36	0	COL14A1	intronic	NA
RCC_T3--1	chr8:127086323	G	NA	21	0	21	62.429	12.311	0	0	0	21	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--2	chr8:127086323	G	NA	34	0	34	60.824	13.037	0	0	0	34	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--3	chr8:127086323	G	T	27	0.037	26	63.500	12.225	1	72.000	0.000	26	1	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--4	chr8:127086323	G	T	36	0.111	32	60.031	13.202	4	59.000	8.287	32	4	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--5	chr8:127086323	G	NA	37	0	37	64.324	7.352	0	0	0	37	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--6	chr8:127086323	G	NA	35	0	35	60.800	13.051	0	0	0	35	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--7	chr8:127086323	G	NA	24	0	24	66.917	5.405	0	0	0	24	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--8	chr8:127086323	G	NA	37	0	37	62.649	10.237	0	0	0	37	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--GL	chr8:127086323	G	NA	34	0	34	61.735	11.543	0	0	0	34	0	LINC00861(dist=122882),FAM84B(dist=478360)	intergenic	NA
RCC_T3--1	chr8:143866850	C	NA	17	0	17	65.706	4.239	0	0	0	17	0	LY6D	exonic	synonymous_SNV
RCC_T3--2	chr8:143866850	C	NA	35	0	35	66.771	4.023	0	0	0	35	0	LY6D	exonic	synonymous_SNV
RCC_T3--3	chr8:143866850	C	NA	37	0	37	67.351	3.490	0	0	0	37	0	LY6D	exonic	synonymous_SNV
RCC_T3--4	chr8:143866850	C	NA	16	0	16	68.875	4.145	0	0	0	16	0	LY6D	exonic	synonymous_SNV
RCC_T3--5	chr8:143866850	C	NA	22	0	22	67.409	8.227	0	0	0	22	0	LY6D	exonic	synonymous_SNV
RCC_T3--6	chr8:143866850	C	A	20	0.200	16	66.500	4.066	4	66.500	6.557	16	4	LY6D	exonic	synonymous_SNV
RCC_T3--7	chr8:143866850	C	NA	25	0	25	64.200	9.570	0	0	0	25	0	LY6D	exonic	synonymous_SNV
RCC_T3--8	chr8:143866850	C	NA	30	0	30	67.633	5.163	0	0	0	30	0	LY6D	exonic	synonymous_SNV
RCC_T3--GL	chr8:143866850	C	NA	33	0	33	64.606	8.467	0	0	0	33	0	LY6D	exonic	synonymous_SNV
RCC_T3--1	chr8:144139221	C	NA	34	0	34	67.618	4.207	0	0	0	34	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--2	chr8:144139221	C	NA	34	0	34	67.765	3.075	0	0	0	34	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--3	chr8:144139221	C	NA	31	0	31	66.710	4.907	0	0	0	31	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--4	chr8:144139221	C	NA	33	0	33	67.667	2.746	0	0	0	33	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--5	chr8:144139221	C	NA	55	0	55	66.145	7.202	0	0	0	55	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--6	chr8:144139221	C	NA	42	0	42	67.000	6.462	0	0	0	42	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--7	chr8:144139221	C	A	52	0.115	46	65.674	5.978	6	68.167	7.111	46	6	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--8	chr8:144139221	C	NA	43	0	43	66.163	6.597	0	0	0	43	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--GL	chr8:144139221	C	NA	36	0	36	67.083	3.798	0	0	0	36	0	C8orf31(dist=3501),LY6H(dist=100110)	intergenic	NA
RCC_T3--1	chr8:145616018	C	A	33	0.121	29	64.690	8.320	4	66.000	5.888	29	4	ADCK5	intronic	NA
RCC_T3--2	chr8:145616018	C	NA	38	0	38	63.579	7.934	0	0	0	38	0	ADCK5	intronic	NA
RCC_T3--3	chr8:145616018	C	NA	40	0	40	62.350	8.804	0	0	0	40	0	ADCK5	intronic	NA
RCC_T3--4	chr8:145616018	C	NA	37	0	37	66.622	5.794	0	0	0	37	0	ADCK5	intronic	NA
RCC_T3--5	chr8:145616018	C	NA	27	0	27	62.222	10.032	0	0	0	27	0	ADCK5	intronic	NA
RCC_T3--6	chr8:145616018	C	NA	32	0	32	66.188	4.012	0	0	0	32	0	ADCK5	intronic	NA
RCC_T3--7	chr8:145616018	C	NA	42	0	42	65.548	4.810	0	0	0	42	0	ADCK5	intronic	NA
RCC_T3--8	chr8:145616018	C	NA	37	0	37	64.162	6.509	0	0	0	37	0	ADCK5	intronic	NA
RCC_T3--GL	chr8:145616018	C	NA	53	0	53	59.151	10.735	0	0	0	53	0	ADCK5	intronic	NA
RCC_T3--1	chr8:145665451	G	NA	23	0	23	65.087	8.964	0	0	0	23	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--2	chr8:145665451	G	NA	40	0	40	64.650	9.598	0	0	0	40	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--3	chr8:145665451	G	NA	31	0	31	62.806	9.404	0	0	0	31	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--4	chr8:145665451	G	NA	36	0	35	66.257	6.679	0	0	0	35	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--5	chr8:145665451	G	NA	36	0	36	63.722	10.713	0	0	0	36	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--6	chr8:145665451	G	A	48	0.125	42	64.690	6.806	6	62.500	5.683	42	6	TONSL	exonic	nonsynonymous_SNV
RCC_T3--7	chr8:145665451	G	NA	43	0	43	64.000	8.124	0	0	0	43	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--8	chr8:145665451	G	NA	40	0	40	65.750	8.323	0	0	0	40	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--GL	chr8:145665451	G	NA	39	0	39	60.564	10.427	0	0	0	39	0	TONSL	exonic	nonsynonymous_SNV
RCC_T3--1	chr8:17891395	G	NA	22	0	22	67.591	5.779	0	0	0	22	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--2	chr8:17891395	G	NA	32	0	32	67.938	5.913	0	0	0	32	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--3	chr8:17891395	G	NA	33	0	33	69.848	3.104	0	0	0	33	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--4	chr8:17891395	G	NA	27	0	27	69.333	3.648	0	0	0	27	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--5	chr8:17891395	G	A	20	0.200	16	67.938	4.479	4	65.250	5.500	16	4	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--6	chr8:17891395	G	NA	32	0	32	68.406	5.167	0	0	0	32	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--7	chr8:17891395	G	NA	29	0	29	67.103	9.194	0	0	0	29	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--8	chr8:17891395	G	NA	33	0	32	69.781	3.643	0	0	0	32	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--GL	chr8:17891395	G	NA	39	0	39	67.872	7.838	0	0	0	39	0	PCM1(dist=3938),ASAH1(dist=22530)	intergenic	NA
RCC_T3--1	chr8:22054670	C	NA	41	0	41	67.195	4.273	0	0	0	41	0	BMP1	intronic	NA
RCC_T3--2	chr8:22054670	C	NA	53	0	53	66.472	6.320	0	0	0	53	0	BMP1	intronic	NA
RCC_T3--3	chr8:22054670	C	NA	30	0	30	67.833	5.079	0	0	0	30	0	BMP1	intronic	NA
RCC_T3--4	chr8:22054670	C	NA	30	0	30	67.233	2.861	0	0	0	30	0	BMP1	intronic	NA
RCC_T3--5	chr8:22054670	C	T	28	0.143	24	66.792	5.073	4	62.500	1.000	24	4	BMP1	intronic	NA
RCC_T3--6	chr8:22054670	C	NA	34	0	33	66.939	4.603	0	0	0	33	0	BMP1	intronic	NA
RCC_T3--7	chr8:22054670	C	NA	36	0	36	66.972	6.889	0	0	0	36	0	BMP1	intronic	NA
RCC_T3--8	chr8:22054670	C	NA	39	0	39	66.154	6.850	0	0	0	39	0	BMP1	intronic	NA
RCC_T3--GL	chr8:22054670	C	NA	54	0	54	66.519	5.094	0	0	0	54	0	BMP1	intronic	NA
RCC_T3--1	chr8:23159679	G	NA	40	0	40	67.275	5.038	0	0	0	40	0	LOXL2	intronic	NA
RCC_T3--2	chr8:23159679	G	NA	52	0	52	67.058	4.304	0	0	0	52	0	LOXL2	intronic	NA
RCC_T3--3	chr8:23159679	G	A	35	0.114	31	67.677	4.339	4	64.000	4.967	31	4	LOXL2	intronic	NA
RCC_T3--4	chr8:23159679	G	NA	46	0	46	67.435	3.311	0	0	0	46	0	LOXL2	intronic	NA
RCC_T3--5	chr8:23159679	G	NA	36	0	36	65.944	6.392	0	0	0	36	0	LOXL2	intronic	NA
RCC_T3--6	chr8:23159679	G	NA	40	0	40	68.200	3.065	0	0	0	40	0	LOXL2	intronic	NA
RCC_T3--7	chr8:23159679	G	NA	35	0	35	67.914	3.119	0	0	0	35	0	LOXL2	intronic	NA
RCC_T3--8	chr8:23159679	G	NA	64	0	64	67.672	3.634	0	0	0	64	0	LOXL2	intronic	NA
RCC_T3--GL	chr8:23159679	G	NA	52	0	52	65.654	7.319	0	0	0	52	0	LOXL2	intronic	NA
RCC_T3--1	chr8:27147466	C	NA	21	0	21	67.571	3.487	0	0	0	21	0	TRIM35	intronic	NA
RCC_T3--2	chr8:27147466	C	NA	26	0	26	65.577	7.256	0	0	0	26	0	TRIM35	intronic	NA
RCC_T3--3	chr8:27147466	C	NA	40	0	40	64.050	8.305	0	0	0	40	0	TRIM35	intronic	NA
RCC_T3--4	chr8:27147466	C	T	33	0.030	32	65.531	7.787	1	67.000	0.000	32	1	TRIM35	intronic	NA
RCC_T3--5	chr8:27147466	C	NA	16	0	16	63.688	4.854	0	0	0	16	0	TRIM35	intronic	NA
RCC_T3--6	chr8:27147466	C	NA	16	0	16	62.750	11.469	0	0	0	16	0	TRIM35	intronic	NA
RCC_T3--7	chr8:27147466	C	NA	29	0	29	67.966	4.031	0	0	0	29	0	TRIM35	intronic	NA
RCC_T3--8	chr8:27147466	C	T	22	0.182	18	64.000	10.716	4	64.500	8.021	18	4	TRIM35	intronic	NA
RCC_T3--GL	chr8:27147466	C	NA	44	0	44	64.795	6.565	0	0	0	44	0	TRIM35	intronic	NA
RCC_T3--1	chr8:3063187	C	NA	56	0	54	67.093	7.858	0	0	0	54	0	CSMD1	intronic	NA
RCC_T3--2	chr8:3063187	C	NA	49	0	49	69.082	3.421	0	0	0	49	0	CSMD1	intronic	NA
RCC_T3--3	chr8:3063187	C	NA	47	0	47	67.511	6.724	0	0	0	47	0	CSMD1	intronic	NA
RCC_T3--4	chr8:3063187	C	NA	58	0	58	68.793	4.167	0	0	0	58	0	CSMD1	intronic	NA
RCC_T3--5	chr8:3063187	C	A	53	0.113	47	67.426	7.252	6	68.000	2.757	47	6	CSMD1	intronic	NA
RCC_T3--6	chr8:3063187	C	NA	51	0	51	67.510	6.522	0	0	0	51	0	CSMD1	intronic	NA
RCC_T3--7	chr8:3063187	C	NA	36	0	36	67.333	6.953	0	0	0	36	0	CSMD1	intronic	NA
RCC_T3--8	chr8:3063187	C	NA	69	0	69	67.377	6.294	0	0	0	69	0	CSMD1	intronic	NA
RCC_T3--GL	chr8:3063187	C	NA	55	0	55	68.309	3.458	0	0	0	55	0	CSMD1	intronic	NA
RCC_T3--1	chr8:33310701	C	NA	48	0	48	66.208	8.875	0	0	0	48	0	FUT10	intronic	NA
RCC_T3--2	chr8:33310701	C	NA	60	0	59	65.949	9.209	0	0	0	59	0	FUT10	intronic	NA
RCC_T3--3	chr8:33310701	C	NA	64	0	64	69.047	3.204	0	0	0	64	0	FUT10	intronic	NA
RCC_T3--4	chr8:33310701	C	NA	80	0	79	67.203	5.548	0	0	0	79	0	FUT10	intronic	NA
RCC_T3--5	chr8:33310701	C	NA	57	0	57	68.263	4.361	0	0	0	57	0	FUT10	intronic	NA
RCC_T3--6	chr8:33310701	C	A	54	0.111	48	67.583	4.793	6	67.167	4.167	48	6	FUT10	intronic	NA
RCC_T3--7	chr8:33310701	C	NA	60	0	60	68.183	5.000	0	0	0	60	0	FUT10	intronic	NA
RCC_T3--8	chr8:33310701	C	NA	71	0	71	65.014	9.909	0	0	0	71	0	FUT10	intronic	NA
RCC_T3--GL	chr8:33310701	C	NA	89	0	89	66.831	5.184	0	0	0	89	0	FUT10	intronic	NA
RCC_T3--1	chr8:37697631	C	NA	28	0	28	67.286	3.952	0	0	0	28	0	GPR124	intronic	NA
RCC_T3--2	chr8:37697631	C	NA	35	0	35	67.457	2.914	0	0	0	35	0	GPR124	intronic	NA
RCC_T3--3	chr8:37697631	C	NA	45	0	45	63.889	8.291	0	0	0	45	0	GPR124	intronic	NA
RCC_T3--4	chr8:37697631	C	NA	38	0	38	65.316	7.041	0	0	0	38	0	GPR124	intronic	NA
RCC_T3--5	chr8:37697631	C	G	33	0.121	29	67.034	4.280	4	58.250	15.152	29	4	GPR124	intronic	NA
RCC_T3--6	chr8:37697631	C	NA	29	0	29	62.931	9.381	0	0	0	29	0	GPR124	intronic	NA
RCC_T3--7	chr8:37697631	C	NA	26	0	26	67.192	4.596	0	0	0	26	0	GPR124	intronic	NA
RCC_T3--8	chr8:37697631	C	NA	40	0	40	68.600	3.754	0	0	0	40	0	GPR124	intronic	NA
RCC_T3--GL	chr8:37697631	C	NA	40	0	40	65.100	5.865	0	0	0	40	0	GPR124	intronic	NA
RCC_T3--1	chr8:38458552	G	T	41	0.049	39	64.077	8.132	2	61.500	4.950	39	2	RNF5P1	ncRNA_exonic	NA
RCC_T3--2	chr8:38458552	G	T	66	0.045	63	63.921	9.918	3	48.667	13.650	63	3	RNF5P1	ncRNA_exonic	NA
RCC_T3--3	chr8:38458552	G	T	45	0.178	37	67.514	7.482	8	54.000	11.110	37	8	RNF5P1	ncRNA_exonic	NA
RCC_T3--4	chr8:38458552	G	T	47	0.021	46	65.957	7.757	1	64.000	0.000	46	1	RNF5P1	ncRNA_exonic	NA
RCC_T3--5	chr8:38458552	G	NA	45	0	42	64.976	6.198	0	0	0	42	0	RNF5P1	ncRNA_exonic	NA
RCC_T3--6	chr8:38458552	G	T	39	0.026	38	63.342	9.691	1	62.000	0.000	38	1	RNF5P1	ncRNA_exonic	NA
RCC_T3--7	chr8:38458552	G	NA	41	0	40	65.875	7.356	0	0	0	40	0	RNF5P1	ncRNA_exonic	NA
RCC_T3--8	chr8:38458552	G	T	57	0.088	51	63.216	9.963	5	54.400	12.442	51	5	RNF5P1	ncRNA_exonic	NA
RCC_T3--GL	chr8:38458552	G	NA	50	0	49	65.102	7.349	0	0	0	49	0	RNF5P1	ncRNA_exonic	NA
RCC_T3--1	chr8:42174331	G	NA	40	0	40	66.200	5.730	0	0	0	40	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--2	chr8:42174331	G	NA	27	0	27	65.778	7.464	0	0	0	27	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--3	chr8:42174331	G	NA	39	0	39	64.256	7.748	0	0	0	39	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--4	chr8:42174331	G	NA	49	0	49	64.796	7.958	0	0	0	49	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--5	chr8:42174331	G	NA	35	0	34	65.794	7.942	0	0	0	34	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--6	chr8:42174331	G	NA	30	0	30	66.167	7.382	0	0	0	30	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--7	chr8:42174331	G	A	47	0.128	41	65.537	6.364	6	64.000	2.000	41	6	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--8	chr8:42174331	G	NA	43	0	43	66.837	7.145	0	0	0	43	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--GL	chr8:42174331	G	NA	35	0	35	64.286	5.944	0	0	0	35	0	IKBKB	exonic	nonsynonymous_SNV
RCC_T3--1	chr8:8234182	G	NA	27	0	27	63.148	9.754	0	0	0	27	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--2	chr8:8234182	G	T	35	0.029	34	63.471	7.794	1	33.000	0.000	34	1	SGK223	exonic	nonsynonymous_SNV
RCC_T3--3	chr8:8234182	G	T	34	0.118	30	64.433	7.055	4	62.750	1.500	30	4	SGK223	exonic	nonsynonymous_SNV
RCC_T3--4	chr8:8234182	G	NA	28	0	28	65.357	7.020	0	0	0	28	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--5	chr8:8234182	G	NA	29	0	29	62.241	9.062	0	0	0	29	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--6	chr8:8234182	G	NA	37	0	37	60.351	11.275	0	0	0	37	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--7	chr8:8234182	G	NA	38	0	38	61.816	10.062	0	0	0	38	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--8	chr8:8234182	G	NA	26	0	26	64.423	5.383	0	0	0	26	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--GL	chr8:8234182	G	NA	38	0	38	64.868	7.053	0	0	0	38	0	SGK223	exonic	nonsynonymous_SNV
RCC_T3--1	chr8:99917294	C	T	32	0.125	28	68.607	3.685	4	53.000	11.402	28	4	STK3	intronic	NA
RCC_T3--2	chr8:99917294	C	NA	36	0	36	68.361	4.022	0	0	0	36	0	STK3	intronic	NA
RCC_T3--3	chr8:99917294	C	NA	48	0	48	67.875	4.355	0	0	0	48	0	STK3	intronic	NA
RCC_T3--4	chr8:99917294	C	NA	34	0	34	67.912	6.067	0	0	0	34	0	STK3	intronic	NA
RCC_T3--5	chr8:99917294	C	NA	39	0	39	66.154	5.715	0	0	0	39	0	STK3	intronic	NA
RCC_T3--6	chr8:99917294	C	NA	39	0	38	66.842	5.626	0	0	0	38	0	STK3	intronic	NA
RCC_T3--7	chr8:99917294	C	NA	39	0	39	65.590	7.666	0	0	0	39	0	STK3	intronic	NA
RCC_T3--8	chr8:99917294	C	NA	36	0	36	64.778	8.086	0	0	0	36	0	STK3	intronic	NA
RCC_T3--GL	chr8:99917294	C	NA	40	0	40	67.225	4.682	0	0	0	40	0	STK3	intronic	NA
RCC_T3--1	chr9:100895278	T	NA	19	0	19	67.316	6.074	0	0	0	19	0	CORO2A	intronic	NA
RCC_T3--2	chr9:100895278	T	NA	32	0	32	66.969	8.585	0	0	0	32	0	CORO2A	intronic	NA
RCC_T3--3	chr9:100895278	T	NA	36	0	36	67.583	4.807	0	0	0	36	0	CORO2A	intronic	NA
RCC_T3--4	chr9:100895278	T	NA	25	0	25	69.400	3.149	0	0	0	25	0	CORO2A	intronic	NA
RCC_T3--5	chr9:100895278	T	NA	27	0	27	66.148	5.524	0	0	0	27	0	CORO2A	intronic	NA
RCC_T3--6	chr9:100895278	T	C	31	0.129	27	66.926	6.748	4	56.750	16.661	27	4	CORO2A	intronic	NA
RCC_T3--7	chr9:100895278	T	NA	39	0	39	66.077	5.927	0	0	0	39	0	CORO2A	intronic	NA
RCC_T3--8	chr9:100895278	T	NA	35	0	35	69.086	3.981	0	0	0	35	0	CORO2A	intronic	NA
RCC_T3--GL	chr9:100895278	T	NA	44	0	44	66.591	7.528	0	0	0	44	0	CORO2A	intronic	NA
RCC_T3--1	chr9:100900048	C	A	29	0.138	24	68.958	2.177	4	63.750	9.215	24	4	CORO2A	intronic	NA
RCC_T3--2	chr9:100900048	C	NA	45	0	45	69.044	3.089	0	0	0	45	0	CORO2A	intronic	NA
RCC_T3--3	chr9:100900048	C	NA	39	0	39	65.205	8.066	0	0	0	39	0	CORO2A	intronic	NA
RCC_T3--4	chr9:100900048	C	NA	38	0	38	68.026	3.908	0	0	0	38	0	CORO2A	intronic	NA
RCC_T3--5	chr9:100900048	C	NA	24	0	24	68.208	2.413	0	0	0	24	0	CORO2A	intronic	NA
RCC_T3--6	chr9:100900048	C	NA	36	0	36	66.583	4.024	0	0	0	36	0	CORO2A	intronic	NA
RCC_T3--7	chr9:100900048	C	NA	42	0	42	68.833	2.836	0	0	0	42	0	CORO2A	intronic	NA
RCC_T3--8	chr9:100900048	C	NA	24	0	24	64.375	9.333	0	0	0	24	0	CORO2A	intronic	NA
RCC_T3--GL	chr9:100900048	C	NA	35	0	35	67.657	4.051	0	0	0	35	0	CORO2A	intronic	NA
RCC_T3--1	chr9:101608513	G	T	34	0.118	30	68.000	4.218	4	69.500	3.000	30	4	GALNT12	intronic	NA
RCC_T3--2	chr9:101608513	G	NA	30	0	30	67.900	4.080	0	0	0	30	0	GALNT12	intronic	NA
RCC_T3--3	chr9:101608513	G	NA	34	0	34	69.118	3.170	0	0	0	34	0	GALNT12	intronic	NA
RCC_T3--4	chr9:101608513	G	NA	33	0	33	67.061	7.075	0	0	0	33	0	GALNT12	intronic	NA
RCC_T3--5	chr9:101608513	G	NA	26	0	26	67.385	4.281	0	0	0	26	0	GALNT12	intronic	NA
RCC_T3--6	chr9:101608513	G	NA	34	0	34	67.294	4.713	0	0	0	34	0	GALNT12	intronic	NA
RCC_T3--7	chr9:101608513	G	NA	32	0	32	67.812	3.979	0	0	0	32	0	GALNT12	intronic	NA
RCC_T3--8	chr9:101608513	G	NA	28	0	28	68.643	3.644	0	0	0	28	0	GALNT12	intronic	NA
RCC_T3--GL	chr9:101608513	G	NA	35	0	35	66.629	5.247	0	0	0	35	0	GALNT12	intronic	NA
RCC_T3--1	chr9:116181318	C	NA	32	0	32	69.000	5.565	0	0	0	32	0	C9orf43	intronic	NA
RCC_T3--2	chr9:116181318	C	NA	48	0	48	69.812	2.247	0	0	0	48	0	C9orf43	intronic	NA
RCC_T3--3	chr9:116181318	C	NA	62	0	62	68.710	5.606	0	0	0	62	0	C9orf43	intronic	NA
RCC_T3--4	chr9:116181318	C	NA	50	0	50	69.440	4.161	0	0	0	50	0	C9orf43	intronic	NA
RCC_T3--5	chr9:116181318	C	A	51	0.118	45	67.844	3.548	6	65.833	1.169	45	6	C9orf43	intronic	NA
RCC_T3--6	chr9:116181318	C	NA	47	0	47	69.596	2.826	0	0	0	47	0	C9orf43	intronic	NA
RCC_T3--7	chr9:116181318	C	NA	58	0	58	69.345	3.237	0	0	0	58	0	C9orf43	intronic	NA
RCC_T3--8	chr9:116181318	C	NA	37	0	37	68.081	6.986	0	0	0	37	0	C9orf43	intronic	NA
RCC_T3--GL	chr9:116181318	C	NA	52	0	52	68.923	4.930	0	0	0	52	0	C9orf43	intronic	NA
RCC_T3--1	chr9:123782175	A	NA	30	0	30	69.500	2.898	0	0	0	30	0	C5	intronic	NA
RCC_T3--2	chr9:123782175	A	NA	28	0	28	68.679	6.278	0	0	0	28	0	C5	intronic	NA
RCC_T3--3	chr9:123782175	A	NA	47	0	47	69.383	3.152	0	0	0	47	0	C5	intronic	NA
RCC_T3--4	chr9:123782175	A	G	28	0.143	24	70.167	2.745	4	68.000	1.826	24	4	C5	intronic	NA
RCC_T3--5	chr9:123782175	A	NA	37	0	37	68.297	5.547	0	0	0	37	0	C5	intronic	NA
RCC_T3--6	chr9:123782175	A	NA	36	0	36	67.917	4.699	0	0	0	36	0	C5	intronic	NA
RCC_T3--7	chr9:123782175	A	NA	47	0	47	69.234	2.752	0	0	0	47	0	C5	intronic	NA
RCC_T3--8	chr9:123782175	A	NA	40	0	40	68.100	3.855	0	0	0	40	0	C5	intronic	NA
RCC_T3--GL	chr9:123782175	A	NA	41	0	41	68.512	3.147	0	0	0	41	0	C5	intronic	NA
RCC_T3--1	chr9:131004501	C	NA	24	0	24	65.917	4.951	0	0	0	24	0	DNM1	intronic	NA
RCC_T3--2	chr9:131004501	C	A	27	0.148	23	63.565	10.778	4	68.250	1.500	23	4	DNM1	intronic	NA
RCC_T3--3	chr9:131004501	C	NA	50	0	50	64.360	5.753	0	0	0	50	0	DNM1	intronic	NA
RCC_T3--4	chr9:131004501	C	NA	43	0	43	66.209	5.285	0	0	0	43	0	DNM1	intronic	NA
RCC_T3--5	chr9:131004501	C	NA	39	0	39	66.564	4.728	0	0	0	39	0	DNM1	intronic	NA
RCC_T3--6	chr9:131004501	C	NA	34	0	34	63.912	8.618	0	0	0	34	0	DNM1	intronic	NA
RCC_T3--7	chr9:131004501	C	NA	35	0	34	64.559	7.794	0	0	0	34	0	DNM1	intronic	NA
RCC_T3--8	chr9:131004501	C	NA	46	0	46	64.696	5.537	0	0	0	46	0	DNM1	intronic	NA
RCC_T3--GL	chr9:131004501	C	NA	54	0	54	64.426	6.540	0	0	0	54	0	DNM1	intronic	NA
RCC_T3--1	chr9:131514971	C	NA	19	0	19	66.158	7.396	0	0	0	19	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:131514971	C	NA	29	0	29	66.724	6.425	0	0	0	29	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:131514971	C	NA	26	0	26	67.308	3.450	0	0	0	26	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:131514971	C	NA	35	0	35	67.971	6.649	0	0	0	35	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:131514971	C	NA	16	0	16	66.938	4.725	0	0	0	16	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:131514971	C	NA	23	0	23	68.522	2.391	0	0	0	23	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:131514971	C	T	29	0.138	25	64.920	9.473	4	61.750	2.872	25	4	ZER1	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:131514971	C	NA	20	0	20	65.550	8.211	0	0	0	20	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:131514971	C	NA	33	0	33	67.576	3.382	0	0	0	33	0	ZER1	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:131732986	A	G	23	0.043	22	61.409	9.096	1	33.000	0.000	22	1	NUP188	intronic	NA
RCC_T3--2	chr9:131732986	A	G	32	0.188	26	64.192	10.064	6	36.333	4.676	26	6	NUP188	intronic	NA
RCC_T3--3	chr9:131732986	A	G	30	0.033	29	62.828	8.945	1	33.000	0.000	29	1	NUP188	intronic	NA
RCC_T3--4	chr9:131732986	A	G	32	0.062	30	62.700	9.707	2	33.000	0.000	30	2	NUP188	intronic	NA
RCC_T3--5	chr9:131732986	A	G	26	0.115	23	65.478	6.940	3	34.333	2.309	23	3	NUP188	intronic	NA
RCC_T3--6	chr9:131732986	A	NA	22	0	22	60.591	11.484	0	0	0	22	0	NUP188	intronic	NA
RCC_T3--7	chr9:131732986	A	NA	38	0	38	58.342	12.195	0	0	0	38	0	NUP188	intronic	NA
RCC_T3--8	chr9:131732986	A	G	29	0.034	28	63.000	10.114	1	33.000	0.000	28	1	NUP188	intronic	NA
RCC_T3--GL	chr9:131732986	A	NA	36	0	36	59.306	10.754	0	0	0	36	0	NUP188	intronic	NA
RCC_T3--1	chr9:131757243	G	NA	54	0	54	66.130	8.930	0	0	0	54	0	NUP188	intronic	NA
RCC_T3--2	chr9:131757243	G	T	94	0.202	75	67.307	6.151	19	65.421	4.562	75	19	NUP188	intronic	NA
RCC_T3--3	chr9:131757243	G	NA	73	0	73	66.466	7.244	0	0	0	73	0	NUP188	intronic	NA
RCC_T3--4	chr9:131757243	G	NA	78	0	78	68.013	5.995	0	0	0	78	0	NUP188	intronic	NA
RCC_T3--5	chr9:131757243	G	NA	77	0	77	67.078	5.433	0	0	0	77	0	NUP188	intronic	NA
RCC_T3--6	chr9:131757243	G	NA	58	0	58	67.310	6.492	0	0	0	58	0	NUP188	intronic	NA
RCC_T3--7	chr9:131757243	G	NA	59	0	59	67.000	6.384	0	0	0	59	0	NUP188	intronic	NA
RCC_T3--8	chr9:131757243	G	NA	78	0	78	66.756	7.124	0	0	0	78	0	NUP188	intronic	NA
RCC_T3--GL	chr9:131757243	G	NA	92	0	92	67.511	6.510	0	0	0	92	0	NUP188	intronic	NA
RCC_T3--1	chr9:131847319	C	NA	36	0	36	66.306	4.683	0	0	0	36	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--2	chr9:131847319	C	NA	56	0	56	64.107	9.648	0	0	0	56	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--3	chr9:131847319	C	T	50	0.160	42	65.905	6.882	8	57.500	10.704	42	8	DOLPP1	exonic	synonymous_SNV
RCC_T3--4	chr9:131847319	C	NA	47	0	47	66.638	5.761	0	0	0	47	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--5	chr9:131847319	C	NA	33	0	33	65.939	5.043	0	0	0	33	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--6	chr9:131847319	C	NA	41	0	41	65.341	5.092	0	0	0	41	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--7	chr9:131847319	C	NA	62	0	62	65.274	8.011	0	0	0	62	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--8	chr9:131847319	C	NA	61	0	61	64.885	6.907	0	0	0	61	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--GL	chr9:131847319	C	NA	52	0	52	63.442	10.619	0	0	0	52	0	DOLPP1	exonic	synonymous_SNV
RCC_T3--1	chr9:132484601	G	A	31	0.129	27	65.185	6.546	4	57.500	13.102	27	4	PRRX2	exonic	synonymous_SNV
RCC_T3--2	chr9:132484601	G	NA	38	0	38	65.395	6.441	0	0	0	38	0	PRRX2	exonic	synonymous_SNV
RCC_T3--3	chr9:132484601	G	NA	34	0	34	67.618	3.601	0	0	0	34	0	PRRX2	exonic	synonymous_SNV
RCC_T3--4	chr9:132484601	G	NA	32	0	32	67.906	2.775	0	0	0	32	0	PRRX2	exonic	synonymous_SNV
RCC_T3--5	chr9:132484601	G	NA	61	0	61	64.148	5.899	0	0	0	61	0	PRRX2	exonic	synonymous_SNV
RCC_T3--6	chr9:132484601	G	NA	37	0	37	65.162	6.685	0	0	0	37	0	PRRX2	exonic	synonymous_SNV
RCC_T3--7	chr9:132484601	G	NA	45	0	45	65.689	6.934	0	0	0	45	0	PRRX2	exonic	synonymous_SNV
RCC_T3--8	chr9:132484601	G	NA	45	0	45	66.067	4.125	0	0	0	45	0	PRRX2	exonic	synonymous_SNV
RCC_T3--GL	chr9:132484601	G	NA	37	0	37	64.216	7.642	0	0	0	37	0	PRRX2	exonic	synonymous_SNV
RCC_T3--1	chr9:134340449	C	T	31	0.129	27	65.296	4.401	4	66.750	3.594	27	4	PRRC2B	exonic	synonymous_SNV
RCC_T3--2	chr9:134340449	C	NA	47	0	47	66.660	6.435	0	0	0	47	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--3	chr9:134340449	C	NA	48	0	48	64.646	7.445	0	0	0	48	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--4	chr9:134340449	C	NA	44	0	44	64.705	9.118	0	0	0	44	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--5	chr9:134340449	C	NA	59	0	59	66.678	7.551	0	0	0	59	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--6	chr9:134340449	C	NA	38	0	38	67.711	4.502	0	0	0	38	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--7	chr9:134340449	C	NA	66	0	66	64.288	8.324	0	0	0	66	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--8	chr9:134340449	C	NA	34	0	34	65.206	9.276	0	0	0	34	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--GL	chr9:134340449	C	NA	49	0	49	65.551	5.628	0	0	0	49	0	PRRC2B	exonic	synonymous_SNV
RCC_T3--1	chr9:134494391	G	A	24	0.167	20	66.350	4.591	4	55.000	11.944	20	4	RAPGEF1	intronic	NA
RCC_T3--2	chr9:134494391	G	NA	16	0	16	64.688	9.105	0	0	0	16	0	RAPGEF1	intronic	NA
RCC_T3--3	chr9:134494391	G	NA	39	0	39	64.615	8.012	0	0	0	39	0	RAPGEF1	intronic	NA
RCC_T3--4	chr9:134494391	G	NA	48	0	48	67.396	4.104	0	0	0	48	0	RAPGEF1	intronic	NA
RCC_T3--5	chr9:134494391	G	NA	46	0	46	62.130	10.436	0	0	0	46	0	RAPGEF1	intronic	NA
RCC_T3--6	chr9:134494391	G	NA	38	0	38	61.421	8.735	0	0	0	38	0	RAPGEF1	intronic	NA
RCC_T3--7	chr9:134494391	G	NA	27	0	27	60.778	11.494	0	0	0	27	0	RAPGEF1	intronic	NA
RCC_T3--8	chr9:134494391	G	NA	21	0	21	64.238	9.311	0	0	0	21	0	RAPGEF1	intronic	NA
RCC_T3--GL	chr9:134494391	G	NA	37	0	36	62.778	9.675	0	0	0	36	0	RAPGEF1	intronic	NA
RCC_T3--1	chr9:136199155	G	NA	39	0	39	66.103	8.357	0	0	0	39	0	SURF6	exonic	synonymous_SNV
RCC_T3--2	chr9:136199155	G	NA	53	0	53	66.019	6.200	0	0	0	53	0	SURF6	exonic	synonymous_SNV
RCC_T3--3	chr9:136199155	G	NA	59	0	59	65.932	5.641	0	0	0	59	0	SURF6	exonic	synonymous_SNV
RCC_T3--4	chr9:136199155	G	NA	62	0	62	65.903	8.333	0	0	0	62	0	SURF6	exonic	synonymous_SNV
RCC_T3--5	chr9:136199155	G	A	43	0.186	35	67.543	3.221	8	63.625	1.768	35	8	SURF6	exonic	synonymous_SNV
RCC_T3--6	chr9:136199155	G	NA	47	0	47	64.426	8.182	0	0	0	47	0	SURF6	exonic	synonymous_SNV
RCC_T3--7	chr9:136199155	G	NA	51	0	51	63.745	7.059	0	0	0	51	0	SURF6	exonic	synonymous_SNV
RCC_T3--8	chr9:136199155	G	NA	47	0	47	66.553	6.310	0	0	0	47	0	SURF6	exonic	synonymous_SNV
RCC_T3--GL	chr9:136199155	G	NA	62	0	62	66.016	6.083	0	0	0	62	0	SURF6	exonic	synonymous_SNV
RCC_T3--1	chr9:137004933	G	NA	22	0	22	67.091	4.710	0	0	0	22	0	WDR5	UTR5	NA
RCC_T3--2	chr9:137004933	G	NA	41	0	41	67.829	6.659	0	0	0	41	0	WDR5	UTR5	NA
RCC_T3--3	chr9:137004933	G	NA	45	0	45	68.178	4.769	0	0	0	45	0	WDR5	UTR5	NA
RCC_T3--4	chr9:137004933	G	NA	30	0	30	66.100	8.036	0	0	0	30	0	WDR5	UTR5	NA
RCC_T3--5	chr9:137004933	G	A	19	0.158	16	67.438	3.140	3	69.333	2.309	16	3	WDR5	UTR5	NA
RCC_T3--6	chr9:137004933	G	NA	23	0	23	66.957	3.902	0	0	0	23	0	WDR5	UTR5	NA
RCC_T3--7	chr9:137004933	G	NA	41	0	41	65.488	8.518	0	0	0	41	0	WDR5	UTR5	NA
RCC_T3--8	chr9:137004933	G	NA	21	0	21	64.667	9.896	0	0	0	21	0	WDR5	UTR5	NA
RCC_T3--GL	chr9:137004933	G	NA	36	0	36	67.306	5.980	0	0	0	36	0	WDR5	UTR5	NA
RCC_T3--1	chr9:139396338	G	NA	30	0	30	67.533	6.067	0	0	0	30	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--2	chr9:139396338	G	NA	37	0	37	67.324	5.912	0	0	0	37	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--3	chr9:139396338	G	NA	45	0	45	67.467	6.276	0	0	0	45	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--4	chr9:139396338	G	NA	36	0	36	68.056	3.869	0	0	0	36	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--5	chr9:139396338	G	A	33	0.121	29	66.655	7.733	4	66.000	2.582	29	4	NOTCH1	exonic	synonymous_SNV
RCC_T3--6	chr9:139396338	G	NA	26	0	26	64.577	9.313	0	0	0	26	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--7	chr9:139396338	G	NA	51	0	51	67.059	5.849	0	0	0	51	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--8	chr9:139396338	G	NA	29	0	29	66.828	5.008	0	0	0	29	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--GL	chr9:139396338	G	NA	48	0	48	66.479	6.474	0	0	0	48	0	NOTCH1	exonic	synonymous_SNV
RCC_T3--1	chr9:139906381	T	NA	21	0	21	60.952	10.380	0	0	0	21	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:139906381	T	NA	27	0	27	64.815	8.134	0	0	0	27	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:139906381	T	NA	41	0	41	67.780	4.120	0	0	0	41	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:139906381	T	NA	26	0	26	66.500	6.671	0	0	0	26	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:139906381	T	NA	28	0	28	65.929	7.458	0	0	0	28	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:139906381	T	NA	18	0	18	66.278	5.475	0	0	0	18	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:139906381	T	NA	27	0	27	64.111	8.201	0	0	0	27	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:139906381	T	C	31	0.129	27	65.704	7.086	4	69.000	3.464	27	4	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:139906381	T	NA	45	0	45	66.911	6.090	0	0	0	45	0	ABCA2	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:140435132	T	NA	19	0	19	63.737	4.134	0	0	0	19	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:140435132	T	NA	20	0	20	64.200	8.624	0	0	0	20	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:140435132	T	NA	24	0	24	65.542	4.191	0	0	0	24	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:140435132	T	NA	31	0	31	64.839	5.067	0	0	0	31	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:140435132	T	NA	25	0	25	58.600	12.281	0	0	0	25	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:140435132	T	C	19	0.211	14	59.214	9.366	4	54.250	14.751	14	4	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:140435132	T	NA	17	0	17	54.176	14.041	0	0	0	17	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:140435132	T	NA	23	0	23	59.478	9.963	0	0	0	23	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:140435132	T	NA	45	0	45	61.911	7.576	0	0	0	45	0	PNPLA7	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:140476917	A	NA	24	0	24	64.458	10.669	0	0	0	24	0	ZMYND19	UTR3	NA
RCC_T3--2	chr9:140476917	A	NA	27	0	27	68.259	4.110	0	0	0	27	0	ZMYND19	UTR3	NA
RCC_T3--3	chr9:140476917	A	NA	27	0	27	66.889	4.209	0	0	0	27	0	ZMYND19	UTR3	NA
RCC_T3--4	chr9:140476917	A	NA	22	0	22	66.636	6.587	0	0	0	22	0	ZMYND19	UTR3	NA
RCC_T3--5	chr9:140476917	A	G	22	0.182	18	64.222	7.042	4	70.500	1.291	18	4	ZMYND19	UTR3	NA
RCC_T3--6	chr9:140476917	A	NA	26	0	26	64.346	9.095	0	0	0	26	0	ZMYND19	UTR3	NA
RCC_T3--7	chr9:140476917	A	NA	34	0	34	66.735	6.345	0	0	0	34	0	ZMYND19	UTR3	NA
RCC_T3--8	chr9:140476917	A	NA	22	0	22	63.227	9.656	0	0	0	22	0	ZMYND19	UTR3	NA
RCC_T3--GL	chr9:140476917	A	NA	40	0	40	64.325	8.844	0	0	0	40	0	ZMYND19	UTR3	NA
RCC_T3--1	chr9:33442371	G	A	14	0.214	11	66.182	6.954	3	55.667	19.732	11	3	AQP3	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:33442371	G	NA	22	0	22	65.364	5.965	0	0	0	22	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:33442371	G	NA	23	0	23	63.957	7.607	0	0	0	23	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:33442371	G	A	18	0.111	16	66.062	4.781	2	62.500	2.121	16	2	AQP3	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:33442371	G	NA	14	0	13	63.000	10.599	0	0	0	13	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:33442371	G	NA	10	0	10	62.500	11.424	0	0	0	10	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:33442371	G	NA	21	0	21	60.000	12.198	0	0	0	21	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:33442371	G	NA	11	0	11	65.727	8.945	0	0	0	11	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:33442371	G	NA	33	0	33	65.667	6.465	0	0	0	33	0	AQP3	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:33922924	T	NA	65	0	65	67.200	5.842	0	0	0	65	0	UBAP2	intronic	NA
RCC_T3--2	chr9:33922924	T	NA	68	0	68	67.603	6.402	0	0	0	68	0	UBAP2	intronic	NA
RCC_T3--3	chr9:33922924	T	NA	77	0	77	66.714	6.215	0	0	0	77	0	UBAP2	intronic	NA
RCC_T3--4	chr9:33922924	T	C	58	0.017	57	66.596	7.056	1	33.000	0.000	57	1	UBAP2	intronic	NA
RCC_T3--5	chr9:33922924	T	NA	54	0	54	65.333	6.838	0	0	0	54	0	UBAP2	intronic	NA
RCC_T3--6	chr9:33922924	T	NA	78	0	78	67.269	5.273	0	0	0	78	0	UBAP2	intronic	NA
RCC_T3--7	chr9:33922924	T	NA	76	0	76	67.355	5.059	0	0	0	76	0	UBAP2	intronic	NA
RCC_T3--8	chr9:33922924	T	C	52	0.115	46	68.304	3.495	6	63.833	6.882	46	6	UBAP2	intronic	NA
RCC_T3--GL	chr9:33922924	T	NA	64	0	64	65.141	7.640	0	0	0	64	0	UBAP2	intronic	NA
RCC_T3--1	chr9:34615988	C	T	59	0.102	53	65.264	10.067	6	66.667	4.227	53	6	DCTN3	intronic	NA
RCC_T3--2	chr9:34615988	C	NA	58	0	58	67.552	4.928	0	0	0	58	0	DCTN3	intronic	NA
RCC_T3--3	chr9:34615988	C	NA	67	0	67	67.075	6.131	0	0	0	67	0	DCTN3	intronic	NA
RCC_T3--4	chr9:34615988	C	NA	74	0	74	67.243	5.802	0	0	0	74	0	DCTN3	intronic	NA
RCC_T3--5	chr9:34615988	C	NA	55	0	55	66.509	6.417	0	0	0	55	0	DCTN3	intronic	NA
RCC_T3--6	chr9:34615988	C	NA	71	0	71	66.915	5.328	0	0	0	71	0	DCTN3	intronic	NA
RCC_T3--7	chr9:34615988	C	NA	86	0	86	66.767	6.649	0	0	0	86	0	DCTN3	intronic	NA
RCC_T3--8	chr9:34615988	C	NA	59	0	59	66.373	8.576	0	0	0	59	0	DCTN3	intronic	NA
RCC_T3--GL	chr9:34615988	C	NA	82	0	81	65.938	7.175	0	0	0	81	0	DCTN3	intronic	NA
RCC_T3--1	chr9:34649655	C	A	20	0.150	17	65.412	5.535	3	63.000	1.732	17	3	GALT	intronic	NA
RCC_T3--2	chr9:34649655	C	A	27	0.037	26	68.885	2.160	1	58.000	0.000	26	1	GALT	intronic	NA
RCC_T3--3	chr9:34649655	C	NA	24	0	24	69.333	2.854	0	0	0	24	0	GALT	intronic	NA
RCC_T3--4	chr9:34649655	C	NA	27	0	27	68.407	3.366	0	0	0	27	0	GALT	intronic	NA
RCC_T3--5	chr9:34649655	C	NA	23	0	23	67.739	3.063	0	0	0	23	0	GALT	intronic	NA
RCC_T3--6	chr9:34649655	C	NA	28	0	28	66.536	5.541	0	0	0	28	0	GALT	intronic	NA
RCC_T3--7	chr9:34649655	C	NA	31	0	31	68.484	3.065	0	0	0	31	0	GALT	intronic	NA
RCC_T3--8	chr9:34649655	C	NA	32	0	32	66.406	6.026	0	0	0	32	0	GALT	intronic	NA
RCC_T3--GL	chr9:34649655	C	NA	36	0	36	66.472	6.213	0	0	0	36	0	GALT	intronic	NA
RCC_T3--1	chr9:35092979	C	NA	30	0	30	67.933	3.657	0	0	0	30	0	PIGO	intronic	NA
RCC_T3--2	chr9:35092979	C	NA	23	0	22	66.818	4.125	0	0	0	22	0	PIGO	intronic	NA
RCC_T3--3	chr9:35092979	C	NA	30	0	30	67.667	3.933	0	0	0	30	0	PIGO	intronic	NA
RCC_T3--4	chr9:35092979	C	NA	38	0	38	68.342	4.035	0	0	0	38	0	PIGO	intronic	NA
RCC_T3--5	chr9:35092979	C	A	29	0.138	25	69.040	4.363	4	66.750	1.500	25	4	PIGO	intronic	NA
RCC_T3--6	chr9:35092979	C	NA	36	0	36	67.750	3.581	0	0	0	36	0	PIGO	intronic	NA
RCC_T3--7	chr9:35092979	C	NA	28	0	28	67.464	7.326	0	0	0	28	0	PIGO	intronic	NA
RCC_T3--8	chr9:35092979	C	NA	20	0	20	68.600	4.684	0	0	0	20	0	PIGO	intronic	NA
RCC_T3--GL	chr9:35092979	C	NA	43	0	43	66.977	3.907	0	0	0	43	0	PIGO	intronic	NA
RCC_T3--1	chr9:35105698	A	NA	21	0	21	65.333	7.996	0	0	0	21	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:35105698	A	NA	44	0	44	66.318	5.352	0	0	0	44	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:35105698	A	NA	39	0	39	64.923	9.783	0	0	0	39	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:35105698	A	NA	45	0	45	66.133	5.798	0	0	0	45	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:35105698	A	NA	30	0	30	64.967	7.686	0	0	0	30	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:35105698	A	NA	33	0	33	67.545	4.644	0	0	0	33	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:35105698	A	NA	36	0	36	66.889	6.714	0	0	0	36	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:35105698	A	T	26	0.154	22	67.545	4.437	4	65.000	4.967	22	4	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:35105698	A	NA	37	0	37	66.189	7.321	0	0	0	37	0	FAM214B	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:37746361	C	NA	24	0	24	67.833	3.212	0	0	0	24	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:37746361	C	NA	32	0	32	66.656	2.659	0	0	0	32	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:37746361	C	NA	34	0	34	64.706	6.825	0	0	0	34	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:37746361	C	NA	26	0	26	66.769	3.398	0	0	0	26	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:37746361	C	NA	49	0	49	62.755	9.699	0	0	0	49	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:37746361	C	NA	45	0	45	64.089	8.056	0	0	0	45	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:37746361	C	A	35	0.114	31	65.484	6.961	4	65.750	0.500	31	4	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:37746361	C	NA	40	0	40	65.550	6.706	0	0	0	40	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:37746361	C	NA	38	0	38	64.263	5.741	0	0	0	38	0	FRMPD1	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:44174691	G	NA	25	0	25	64.320	8.385	0	0	0	25	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--2	chr9:44174691	G	NA	49	0	49	65.592	6.538	0	0	0	49	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--3	chr9:44174691	G	NA	50	0	50	64.360	9.147	0	0	0	50	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--4	chr9:44174691	G	NA	41	0	40	67.750	4.337	0	0	0	40	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--5	chr9:44174691	G	C	42	0.143	36	65.472	7.561	6	57.167	10.778	36	6	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--6	chr9:44174691	G	NA	43	0	43	64.535	7.001	0	0	0	43	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--7	chr9:44174691	G	NA	51	0	51	66.608	7.526	0	0	0	51	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--8	chr9:44174691	G	NA	52	0	52	66.212	7.637	0	0	0	52	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--GL	chr9:44174691	G	NA	52	0	52	65.577	6.578	0	0	0	52	0	CNTNAP3B(dist=252218),LINC01189(dist=212696)	intergenic	NA
RCC_T3--1	chr9:71144481	A	NA	13	0	13	66.692	7.146	0	0	0	13	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--2	chr9:71144481	A	NA	25	0	25	67.960	4.046	0	0	0	25	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--3	chr9:71144481	A	NA	24	0	24	69.000	3.563	0	0	0	24	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--4	chr9:71144481	A	NA	27	0	27	65.889	9.137	0	0	0	27	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--5	chr9:71144481	A	NA	15	0	15	66.667	5.839	0	0	0	15	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--6	chr9:71144481	A	NA	19	0	19	66.526	4.299	0	0	0	19	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--7	chr9:71144481	A	NA	16	0	16	69.625	3.074	0	0	0	16	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--8	chr9:71144481	A	G	32	0.125	28	68.286	2.813	4	67.250	5.852	28	4	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--GL	chr9:71144481	A	NA	39	0	39	67.667	3.436	0	0	0	39	0	PGM5(NM_021965:exon11:c.1615-2A>G)	splicing	NA
RCC_T3--1	chr9:74305208	C	NA	34	0	34	66.735	5.065	0	0	0	34	0	TMEM2	intronic	NA
RCC_T3--2	chr9:74305208	C	NA	42	0	42	68.095	3.384	0	0	0	42	0	TMEM2	intronic	NA
RCC_T3--3	chr9:74305208	C	NA	34	0	34	66.824	6.516	0	0	0	34	0	TMEM2	intronic	NA
RCC_T3--4	chr9:74305208	C	NA	38	0	38	68.684	3.706	0	0	0	38	0	TMEM2	intronic	NA
RCC_T3--5	chr9:74305208	C	G	37	0.108	33	66.455	8.012	4	67.500	3.697	33	4	TMEM2	intronic	NA
RCC_T3--6	chr9:74305208	C	NA	45	0	45	66.689	6.536	0	0	0	45	0	TMEM2	intronic	NA
RCC_T3--7	chr9:74305208	C	NA	35	0	35	66.857	5.652	0	0	0	35	0	TMEM2	intronic	NA
RCC_T3--8	chr9:74305208	C	NA	31	0	31	67.581	4.193	0	0	0	31	0	TMEM2	intronic	NA
RCC_T3--GL	chr9:74305208	C	NA	44	0	44	67.159	4.409	0	0	0	44	0	TMEM2	intronic	NA
RCC_T3--1	chr9:74974275	C	NA	35	0	35	68.457	3.657	0	0	0	35	0	ZFAND5	intronic	NA
RCC_T3--2	chr9:74974275	C	NA	38	0	38	67.079	5.085	0	0	0	38	0	ZFAND5	intronic	NA
RCC_T3--3	chr9:74974275	C	NA	50	0	50	66.620	7.933	0	0	0	50	0	ZFAND5	intronic	NA
RCC_T3--4	chr9:74974275	C	NA	35	0	35	68.000	3.581	0	0	0	35	0	ZFAND5	intronic	NA
RCC_T3--5	chr9:74974275	C	NA	29	0	29	65.552	9.508	0	0	0	29	0	ZFAND5	intronic	NA
RCC_T3--6	chr9:74974275	C	NA	33	0	33	66.515	4.691	0	0	0	33	0	ZFAND5	intronic	NA
RCC_T3--7	chr9:74974275	C	NA	43	0	43	67.721	3.819	0	0	0	43	0	ZFAND5	intronic	NA
RCC_T3--8	chr9:74974275	C	A	36	0.111	32	66.375	8.218	4	56.500	4.123	32	4	ZFAND5	intronic	NA
RCC_T3--GL	chr9:74974275	C	NA	34	0	34	65.471	6.210	0	0	0	34	0	ZFAND5	intronic	NA
RCC_T3--1	chr9:76264821	G	NA	31	0	31	66.903	5.022	0	0	0	31	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--2	chr9:76264821	G	NA	30	0	30	66.000	6.395	0	0	0	30	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--3	chr9:76264821	G	NA	22	0	22	66.091	8.017	0	0	0	22	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--4	chr9:76264821	G	NA	27	0	26	68.115	5.279	0	0	0	26	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--5	chr9:76264821	G	A	19	0.158	16	68.188	6.755	3	61.667	0.577	16	3	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--6	chr9:76264821	G	NA	19	0	19	66.842	7.748	0	0	0	19	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--7	chr9:76264821	G	NA	31	0	31	67.323	4.915	0	0	0	31	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--8	chr9:76264821	G	NA	25	0	25	67.600	8.180	0	0	0	25	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--GL	chr9:76264821	G	NA	38	0	38	66.974	6.676	0	0	0	38	0	ANXA1(dist=479514),MIR6130(dist=103219)	intergenic	NA
RCC_T3--1	chr9:90321340	T	NA	24	0	24	68.042	3.394	0	0	0	24	0	DAPK1	exonic	synonymous_SNV
RCC_T3--2	chr9:90321340	T	NA	28	0	28	65.821	7.201	0	0	0	28	0	DAPK1	exonic	synonymous_SNV
RCC_T3--3	chr9:90321340	T	NA	23	0	23	65.696	3.560	0	0	0	23	0	DAPK1	exonic	synonymous_SNV
RCC_T3--4	chr9:90321340	T	NA	29	0	28	66.857	3.941	0	0	0	28	0	DAPK1	exonic	synonymous_SNV
RCC_T3--5	chr9:90321340	T	NA	32	0	32	65.844	7.140	0	0	0	32	0	DAPK1	exonic	synonymous_SNV
RCC_T3--6	chr9:90321340	T	C	25	0.240	19	67.474	4.101	6	65.167	4.750	19	6	DAPK1	exonic	synonymous_SNV
RCC_T3--7	chr9:90321340	T	NA	30	0	30	66.433	7.682	0	0	0	30	0	DAPK1	exonic	synonymous_SNV
RCC_T3--8	chr9:90321340	T	NA	28	0	28	67.464	4.772	0	0	0	28	0	DAPK1	exonic	synonymous_SNV
RCC_T3--GL	chr9:90321340	T	NA	40	0	40	63.600	8.903	0	0	0	40	0	DAPK1	exonic	synonymous_SNV
RCC_T3--1	chr9:90501800	G	NA	126	0	125	66.056	6.280	0	0	0	125	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--2	chr9:90501800	G	C	113	0.142	97	65.031	8.451	16	68.312	4.110	97	16	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--3	chr9:90501800	G	NA	105	0	105	66.733	5.148	0	0	0	105	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--4	chr9:90501800	G	C	115	0.009	114	66.175	6.213	1	68.000	0.000	114	1	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--5	chr9:90501800	G	NA	116	0	116	65.319	6.981	0	0	0	116	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--6	chr9:90501800	G	NA	102	0	102	65.412	5.492	0	0	0	102	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--7	chr9:90501800	G	NA	143	0	143	65.559	7.439	0	0	0	143	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--8	chr9:90501800	G	NA	114	0	114	65.798	4.678	0	0	0	114	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--GL	chr9:90501800	G	NA	110	0	110	64.427	7.545	0	0	0	110	0	SPATA31E1	exonic	nonsynonymous_SNV
RCC_T3--1	chr9:93512978	C	NA	27	0	27	66.963	7.679	0	0	0	27	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--2	chr9:93512978	C	NA	44	0	44	68.500	4.718	0	0	0	44	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--3	chr9:93512978	C	NA	43	0	43	67.488	6.566	0	0	0	43	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--4	chr9:93512978	C	NA	28	0	28	68.607	4.058	0	0	0	28	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--5	chr9:93512978	C	A	36	0.139	31	66.806	7.373	5	63.800	2.588	31	5	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--6	chr9:93512978	C	NA	33	0	33	66.000	6.285	0	0	0	33	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--7	chr9:93512978	C	NA	57	0	57	68.982	2.663	0	0	0	57	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--8	chr9:93512978	C	NA	39	0	39	67.333	5.152	0	0	0	39	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--GL	chr9:93512978	C	NA	47	0	47	67.277	5.119	0	0	0	47	0	DIRAS2(dist=107870),SYK(dist=51034)	intergenic	NA
RCC_T3--1	chrX:100879873	C	A	26	0.192	20	64.550	7.817	5	59.000	9.110	20	5	ARMCX3	UTR5	NA
RCC_T3--2	chrX:100879873	C	NA	33	0	33	63.485	7.571	0	0	0	33	0	ARMCX3	UTR5	NA
RCC_T3--3	chrX:100879873	C	NA	41	0	41	62.610	10.077	0	0	0	41	0	ARMCX3	UTR5	NA
RCC_T3--4	chrX:100879873	C	NA	30	0	29	62.655	11.932	0	0	0	29	0	ARMCX3	UTR5	NA
RCC_T3--5	chrX:100879873	C	NA	26	0	26	64.962	8.302	0	0	0	26	0	ARMCX3	UTR5	NA
RCC_T3--6	chrX:100879873	C	NA	50	0	50	62.820	9.176	0	0	0	50	0	ARMCX3	UTR5	NA
RCC_T3--7	chrX:100879873	C	NA	39	0	39	63.923	10.761	0	0	0	39	0	ARMCX3	UTR5	NA
RCC_T3--8	chrX:100879873	C	NA	23	0	23	65.435	8.994	0	0	0	23	0	ARMCX3	UTR5	NA
RCC_T3--GL	chrX:100879873	C	NA	49	0	49	62.857	9.994	0	0	0	49	0	ARMCX3	UTR5	NA
RCC_T3--1	chrX:110925199	G	NA	39	0	39	63.436	8.146	0	0	0	39	0	ALG13	intronic	NA
RCC_T3--2	chrX:110925199	G	T	29	0.138	25	66.040	4.402	4	62.750	1.500	25	4	ALG13	intronic	NA
RCC_T3--3	chrX:110925199	G	NA	31	0	31	65.484	8.177	0	0	0	31	0	ALG13	intronic	NA
RCC_T3--4	chrX:110925199	G	NA	35	0	35	66.657	5.099	0	0	0	35	0	ALG13	intronic	NA
RCC_T3--5	chrX:110925199	G	NA	38	0	38	63.763	9.783	0	0	0	38	0	ALG13	intronic	NA
RCC_T3--6	chrX:110925199	G	NA	38	0	38	64.947	9.186	0	0	0	38	0	ALG13	intronic	NA
RCC_T3--7	chrX:110925199	G	NA	27	0	27	63.037	9.436	0	0	0	27	0	ALG13	intronic	NA
RCC_T3--8	chrX:110925199	G	NA	47	0	47	65.532	6.224	0	0	0	47	0	ALG13	intronic	NA
RCC_T3--GL	chrX:110925199	G	NA	40	0	40	64.225	7.661	0	0	0	40	0	ALG13	intronic	NA
RCC_T3--1	chrX:110925232	C	A	75	0.120	65	66.800	6.387	9	69.556	2.698	65	9	ALG13	intronic	NA
RCC_T3--2	chrX:110925232	C	NA	62	0	62	67.823	4.404	0	0	0	62	0	ALG13	intronic	NA
RCC_T3--3	chrX:110925232	C	A	79	0.013	78	67.154	5.978	1	69.000	0.000	78	1	ALG13	intronic	NA
RCC_T3--4	chrX:110925232	C	A	77	0.013	76	67.092	5.987	1	38.000	0.000	76	1	ALG13	intronic	NA
RCC_T3--5	chrX:110925232	C	NA	77	0	77	65.909	8.286	0	0	0	77	0	ALG13	intronic	NA
RCC_T3--6	chrX:110925232	C	NA	91	0	91	66.560	6.531	0	0	0	91	0	ALG13	intronic	NA
RCC_T3--7	chrX:110925232	C	A	64	0.156	54	65.278	8.349	10	69.200	2.530	54	10	ALG13	intronic	NA
RCC_T3--8	chrX:110925232	C	NA	65	0	65	68.046	6.058	0	0	0	65	0	ALG13	intronic	NA
RCC_T3--GL	chrX:110925232	C	NA	72	0	72	65.431	8.322	0	0	0	72	0	ALG13	intronic	NA
RCC_T3--1	chrX:129055631	A	T	31	0.161	26	67.115	3.525	5	63.600	1.817	26	5	UTP14A	intronic	NA
RCC_T3--2	chrX:129055631	A	T	39	0.051	37	67.432	3.701	2	63.000	2.828	37	2	UTP14A	intronic	NA
RCC_T3--3	chrX:129055631	A	T	26	0.038	25	67.960	3.195	1	62.000	0.000	25	1	UTP14A	intronic	NA
RCC_T3--4	chrX:129055631	A	T	27	0.074	25	66.640	7.527	2	63.500	2.121	25	2	UTP14A	intronic	NA
RCC_T3--5	chrX:129055631	A	T	25	0.040	24	66.208	6.547	1	65.000	0.000	24	1	UTP14A	intronic	NA
RCC_T3--6	chrX:129055631	A	T	39	0.051	37	66.324	6.338	2	63.500	2.121	37	2	UTP14A	intronic	NA
RCC_T3--7	chrX:129055631	A	T	32	0.094	29	66.310	5.399	3	64.667	0.577	29	3	UTP14A	intronic	NA
RCC_T3--8	chrX:129055631	A	T	28	0.036	27	67.481	4.070	1	65.000	0.000	27	1	UTP14A	intronic	NA
RCC_T3--GL	chrX:129055631	A	NA	35	0	33	66.758	3.500	0	0	0	33	0	UTP14A	intronic	NA
RCC_T3--1	chrX:139587131	G	NA	34	0	34	63.765	8.268	0	0	0	34	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:139587131	G	NA	32	0	32	65.938	3.926	0	0	0	32	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:139587131	G	NA	30	0	30	66.867	3.758	0	0	0	30	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:139587131	G	NA	29	0	29	65.828	7.097	0	0	0	29	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:139587131	G	NA	27	0	27	66.037	2.295	0	0	0	27	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:139587131	G	A	31	0.129	27	63.556	8.040	4	66.500	1.915	27	4	SOX3	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:139587131	G	NA	25	0	25	63.800	8.297	0	0	0	25	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:139587131	G	NA	30	0	30	64.267	7.611	0	0	0	30	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:139587131	G	NA	37	0	37	62.405	9.054	0	0	0	37	0	SOX3	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:153224234	C	NA	22	0	22	66.727	8.013	0	0	0	22	0	HCFC1	intronic	NA
RCC_T3--2	chrX:153224234	C	A	22	0.182	18	67.056	9.058	4	59.250	8.732	18	4	HCFC1	intronic	NA
RCC_T3--3	chrX:153224234	C	NA	30	0	30	65.800	6.738	0	0	0	30	0	HCFC1	intronic	NA
RCC_T3--4	chrX:153224234	C	NA	25	0	25	64.800	8.406	0	0	0	25	0	HCFC1	intronic	NA
RCC_T3--5	chrX:153224234	C	NA	21	0	21	66.238	4.449	0	0	0	21	0	HCFC1	intronic	NA
RCC_T3--6	chrX:153224234	C	NA	16	0	16	65.000	9.281	0	0	0	16	0	HCFC1	intronic	NA
RCC_T3--7	chrX:153224234	C	NA	28	0	28	66.536	5.521	0	0	0	28	0	HCFC1	intronic	NA
RCC_T3--8	chrX:153224234	C	NA	16	0	16	69.062	2.695	0	0	0	16	0	HCFC1	intronic	NA
RCC_T3--GL	chrX:153224234	C	NA	35	0	35	65.771	6.975	0	0	0	35	0	HCFC1	intronic	NA
RCC_T3--1	chrX:153688831	A	NA	21	0	21	64.190	9.827	0	0	0	21	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:153688831	A	NA	26	0	26	64.846	7.734	0	0	0	26	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:153688831	A	NA	28	0	28	65.500	8.217	0	0	0	28	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:153688831	A	NA	41	0	40	64.925	6.371	0	0	0	40	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:153688831	A	T	34	0.118	30	63.733	7.961	4	66.500	1.732	30	4	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:153688831	A	NA	32	0	31	64.129	8.969	0	0	0	31	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:153688831	A	NA	53	0	53	65.755	5.399	0	0	0	53	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:153688831	A	NA	28	0	28	65.857	4.904	0	0	0	28	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:153688831	A	NA	38	0	38	62.947	7.922	0	0	0	38	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:153690472	T	NA	69	0	69	64.739	8.653	0	0	0	69	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:153690472	T	NA	75	0	75	67.053	4.676	0	0	0	75	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:153690472	T	C	70	0.114	62	64.790	8.341	8	58.000	15.766	62	8	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:153690472	T	NA	78	0	78	64.769	9.118	0	0	0	78	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:153690472	T	NA	64	0	64	64.656	7.751	0	0	0	64	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:153690472	T	NA	80	0	80	65.900	6.492	0	0	0	80	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:153690472	T	NA	87	0	87	66.287	8.208	0	0	0	87	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:153690472	T	NA	68	0	68	66.765	6.119	0	0	0	68	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:153690472	T	NA	75	0	75	64.107	9.873	0	0	0	75	0	PLXNA3	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:2826764	T	NA	40	0	40	65.575	7.103	0	0	0	40	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:2826764	T	NA	30	0	30	66.433	8.764	0	0	0	30	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:2826764	T	NA	28	0	28	65.143	7.825	0	0	0	28	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:2826764	T	NA	25	0	25	65.640	8.514	0	0	0	25	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:2826764	T	NA	28	0	28	64.464	10.451	0	0	0	28	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:2826764	T	A	39	0.154	33	66.242	5.884	6	62.500	5.958	33	6	ARSD	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:2826764	T	NA	43	0	43	65.163	5.273	0	0	0	43	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:2826764	T	NA	38	0	38	65.053	7.608	0	0	0	38	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:2826764	T	NA	45	0	45	64.844	8.040	0	0	0	45	0	ARSD	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:30327059	C	NA	34	0	34	64.441	8.061	0	0	0	34	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:30327059	C	NA	42	0	42	66.762	8.201	0	0	0	42	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:30327059	C	NA	49	0	49	65.469	7.080	0	0	0	49	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:30327059	C	NA	31	0	31	64.710	6.857	0	0	0	31	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:30327059	C	T	50	0.120	44	64.659	8.069	6	66.667	3.327	44	6	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:30327059	C	NA	50	0	50	63.840	9.408	0	0	0	50	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:30327059	C	NA	36	0	36	67.611	5.857	0	0	0	36	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:30327059	C	T	37	0.027	36	65.833	6.822	1	33.000	0.000	36	1	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:30327059	C	NA	38	0	38	65.158	7.653	0	0	0	38	0	NR0B1	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:39931610	C	T	14	0.214	11	66.455	2.464	3	63.667	6.028	11	3	BCOR	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:39931610	C	NA	29	0	29	65.621	3.639	0	0	0	29	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:39931610	C	NA	26	0	26	63.115	9.408	0	0	0	26	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:39931610	C	NA	27	0	26	65.462	2.901	0	0	0	26	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:39931610	C	NA	22	0	22	63.500	7.282	0	0	0	22	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:39931610	C	NA	32	0	32	61.906	10.535	0	0	0	32	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:39931610	C	NA	33	0	33	64.182	7.230	0	0	0	33	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:39931610	C	NA	20	0	20	66.000	3.244	0	0	0	20	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:39931610	C	NA	34	0	34	63.647	6.376	0	0	0	34	0	BCOR	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:40618250	A	NA	30	0	30	68.133	3.776	0	0	0	30	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--2	chrX:40618250	A	NA	32	0	32	64.094	10.014	0	0	0	32	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--3	chrX:40618250	A	NA	37	0	37	66.324	8.397	0	0	0	37	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--4	chrX:40618250	A	NA	32	0	32	67.000	6.928	0	0	0	32	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--5	chrX:40618250	A	G	25	0.160	21	67.381	3.485	4	64.250	2.500	21	4	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--6	chrX:40618250	A	NA	26	0	26	66.769	5.826	0	0	0	26	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--7	chrX:40618250	A	NA	32	0	32	67.531	4.040	0	0	0	32	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--8	chrX:40618250	A	NA	25	0	25	67.640	4.348	0	0	0	25	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--GL	chrX:40618250	A	NA	45	0	45	63.578	10.437	0	0	0	45	0	MED14-AS1(dist=20297),LOC100132831(dist=72220)	intergenic	NA
RCC_T3--1	chrX:40618256	A	NA	28	0	28	68.429	3.532	0	0	0	28	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--2	chrX:40618256	A	NA	34	0	34	67.353	3.961	0	0	0	34	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--3	chrX:40618256	A	NA	37	0	37	65.730	10.077	0	0	0	37	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--4	chrX:40618256	A	NA	31	0	31	66.935	7.252	0	0	0	31	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--5	chrX:40618256	A	T	24	0.167	20	67.750	5.418	4	64.500	1.732	20	4	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--6	chrX:40618256	A	NA	27	0	27	66.741	3.448	0	0	0	27	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--7	chrX:40618256	A	NA	30	0	30	68.100	4.037	0	0	0	30	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--8	chrX:40618256	A	NA	26	0	26	69.000	2.713	0	0	0	26	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--GL	chrX:40618256	A	NA	42	0	42	65.524	6.568	0	0	0	42	0	MED14-AS1(dist=20303),LOC100132831(dist=72214)	intergenic	NA
RCC_T3--1	chrX:45013079	C	NA	33	0	33	66.848	6.496	0	0	0	33	0	CXorf36	intronic	NA
RCC_T3--2	chrX:45013079	C	A	34	0.206	27	66.593	7.510	7	61.143	13.765	27	7	CXorf36	intronic	NA
RCC_T3--3	chrX:45013079	C	NA	43	0	43	68.442	3.096	0	0	0	43	0	CXorf36	intronic	NA
RCC_T3--4	chrX:45013079	C	NA	29	0	29	69.517	3.078	0	0	0	29	0	CXorf36	intronic	NA
RCC_T3--5	chrX:45013079	C	NA	26	0	26	68.000	3.752	0	0	0	26	0	CXorf36	intronic	NA
RCC_T3--6	chrX:45013079	C	NA	34	0	34	66.647	7.002	0	0	0	34	0	CXorf36	intronic	NA
RCC_T3--7	chrX:45013079	C	NA	39	0	39	64.667	7.150	0	0	0	39	0	CXorf36	intronic	NA
RCC_T3--8	chrX:45013079	C	NA	31	0	31	62.065	12.019	0	0	0	31	0	CXorf36	intronic	NA
RCC_T3--GL	chrX:45013079	C	NA	50	0	50	65.620	7.250	0	0	0	50	0	CXorf36	intronic	NA
RCC_T3--1	chrX:47272702	A	NA	74	0	74	67.527	5.059	0	0	0	74	0	ZNF157	exonic	synonymous_SNV
RCC_T3--2	chrX:47272702	A	G	78	0.064	73	66.918	5.797	5	69.600	3.050	73	5	ZNF157	exonic	synonymous_SNV
RCC_T3--3	chrX:47272702	A	NA	97	0	97	66.856	4.356	0	0	0	97	0	ZNF157	exonic	synonymous_SNV
RCC_T3--4	chrX:47272702	A	NA	82	0	82	67.720	4.029	0	0	0	82	0	ZNF157	exonic	synonymous_SNV
RCC_T3--5	chrX:47272702	A	G	69	0.043	66	66.924	6.997	3	68.000	5.292	66	3	ZNF157	exonic	synonymous_SNV
RCC_T3--6	chrX:47272702	A	G	70	0.143	60	68.133	5.472	10	67.800	2.440	60	10	ZNF157	exonic	synonymous_SNV
RCC_T3--7	chrX:47272702	A	NA	77	0	77	67.831	3.080	0	0	0	77	0	ZNF157	exonic	synonymous_SNV
RCC_T3--8	chrX:47272702	A	G	81	0.062	76	66.553	7.389	5	68.200	3.271	76	5	ZNF157	exonic	synonymous_SNV
RCC_T3--GL	chrX:47272702	A	NA	85	0	84	66.440	7.398	0	0	0	84	0	ZNF157	exonic	synonymous_SNV
RCC_T3--1	chrX:48164370	G	T	111	0.198	89	67.910	4.891	22	67.000	3.677	89	22	SSX9	ncRNA_intronic	NA
RCC_T3--2	chrX:48164370	G	T	132	0.220	102	68.069	3.605	29	66.828	6.124	102	29	SSX9	ncRNA_intronic	NA
RCC_T3--3	chrX:48164370	G	T	156	0.256	116	66.440	5.966	40	66.000	6.702	116	40	SSX9	ncRNA_intronic	NA
RCC_T3--4	chrX:48164370	G	T	136	0.279	98	67.510	4.631	38	68.237	3.208	98	38	SSX9	ncRNA_intronic	NA
RCC_T3--5	chrX:48164370	G	T	121	0.041	116	66.543	4.951	5	69.200	3.033	116	5	SSX9	ncRNA_intronic	NA
RCC_T3--6	chrX:48164370	G	T	147	0.095	133	67.496	4.515	14	66.929	3.812	133	14	SSX9	ncRNA_intronic	NA
RCC_T3--7	chrX:48164370	G	T	154	0.266	112	67.339	5.582	41	67.390	5.272	112	41	SSX9	ncRNA_intronic	NA
RCC_T3--8	chrX:48164370	G	T	134	0.097	121	67.488	5.317	13	69.462	1.664	121	13	SSX9	ncRNA_intronic	NA
RCC_T3--GL	chrX:48164370	G	NA	156	0	156	66.910	5.708	0	0	0	156	0	SSX9	ncRNA_intronic	NA
RCC_T3--1	chrX:49033227	G	NA	24	0	24	66.083	4.323	0	0	0	24	0	PRICKLE3	intronic	NA
RCC_T3--2	chrX:49033227	G	NA	33	0	33	65.273	6.559	0	0	0	33	0	PRICKLE3	intronic	NA
RCC_T3--3	chrX:49033227	G	NA	28	0	28	64.750	7.947	0	0	0	28	0	PRICKLE3	intronic	NA
RCC_T3--4	chrX:49033227	G	NA	23	0	23	65.609	7.433	0	0	0	23	0	PRICKLE3	intronic	NA
RCC_T3--5	chrX:49033227	G	A	23	0.174	19	66.158	4.072	4	63.500	1.915	19	4	PRICKLE3	intronic	NA
RCC_T3--6	chrX:49033227	G	NA	24	0	24	66.375	8.053	0	0	0	24	0	PRICKLE3	intronic	NA
RCC_T3--7	chrX:49033227	G	NA	21	0	21	65.571	3.867	0	0	0	21	0	PRICKLE3	intronic	NA
RCC_T3--8	chrX:49033227	G	NA	16	0	16	68.625	3.575	0	0	0	16	0	PRICKLE3	intronic	NA
RCC_T3--GL	chrX:49033227	G	NA	35	0	35	63.886	8.210	0	0	0	35	0	PRICKLE3	intronic	NA
RCC_T3--1	chrX:54949116	G	NA	57	0	57	66.404	7.213	0	0	0	57	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--2	chrX:54949116	G	NA	57	0	57	67.614	6.264	0	0	0	57	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--3	chrX:54949116	G	NA	60	0	60	65.950	7.541	0	0	0	60	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--4	chrX:54949116	G	A	36	0.028	35	66.686	7.572	1	62.000	0.000	35	1	TRO	exonic	nonsynonymous_SNV
RCC_T3--5	chrX:54949116	G	A	32	0.125	28	66.107	6.540	4	64.500	3.697	28	4	TRO	exonic	nonsynonymous_SNV
RCC_T3--6	chrX:54949116	G	NA	55	0	55	66.673	6.357	0	0	0	55	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--7	chrX:54949116	G	NA	54	0	54	66.352	5.249	0	0	0	54	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--8	chrX:54949116	G	NA	59	0	59	65.458	7.057	0	0	0	59	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--GL	chrX:54949116	G	NA	43	0	42	64.310	7.633	0	0	0	42	0	TRO	exonic	nonsynonymous_SNV
RCC_T3--1	chrX:54953426	C	NA	32	0	32	69.375	3.348	0	0	0	32	0	TRO	intronic	NA
RCC_T3--2	chrX:54953426	C	A	55	0.109	49	68.612	5.805	6	68.500	1.643	49	6	TRO	intronic	NA
RCC_T3--3	chrX:54953426	C	NA	61	0	61	67.967	5.811	0	0	0	61	0	TRO	intronic	NA
RCC_T3--4	chrX:54953426	C	NA	66	0	66	68.273	6.186	0	0	0	66	0	TRO	intronic	NA
RCC_T3--5	chrX:54953426	C	NA	60	0	60	67.300	4.604	0	0	0	60	0	TRO	intronic	NA
RCC_T3--6	chrX:54953426	C	NA	57	0	57	67.737	4.117	0	0	0	57	0	TRO	intronic	NA
RCC_T3--7	chrX:54953426	C	NA	56	0	56	68.446	4.151	0	0	0	56	0	TRO	intronic	NA
RCC_T3--8	chrX:54953426	C	NA	42	0	42	68.690	3.653	0	0	0	42	0	TRO	intronic	NA
RCC_T3--GL	chrX:54953426	C	NA	67	0	67	66.388	6.135	0	0	0	67	0	TRO	intronic	NA
RCC_T3--1	chrX:69671946	C	T	19	0.158	16	65.625	8.747	3	64.333	2.887	16	3	DLG3	intronic	NA
RCC_T3--2	chrX:69671946	C	NA	33	0	33	66.364	6.397	0	0	0	33	0	DLG3	intronic	NA
RCC_T3--3	chrX:69671946	C	NA	27	0	27	63.000	10.940	0	0	0	27	0	DLG3	intronic	NA
RCC_T3--4	chrX:69671946	C	NA	39	0	39	66.000	4.205	0	0	0	39	0	DLG3	intronic	NA
RCC_T3--5	chrX:69671946	C	NA	26	0	26	63.346	11.139	0	0	0	26	0	DLG3	intronic	NA
RCC_T3--6	chrX:69671946	C	T	25	0.040	24	67.208	4.568	1	63.000	0.000	24	1	DLG3	intronic	NA
RCC_T3--7	chrX:69671946	C	NA	30	0	30	66.467	7.610	0	0	0	30	0	DLG3	intronic	NA
RCC_T3--8	chrX:69671946	C	NA	23	0	23	63.565	10.837	0	0	0	23	0	DLG3	intronic	NA
RCC_T3--GL	chrX:69671946	C	NA	38	0	38	63.105	10.588	0	0	0	38	0	DLG3	intronic	NA
RCC_T3--1	chrX:71088253	C	NA	25	0	25	67.080	5.267	0	0	0	25	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--2	chrX:71088253	C	NA	37	0	37	66.108	8.862	0	0	0	37	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--3	chrX:71088253	C	T	35	0.114	31	63.419	7.702	4	64.250	3.775	31	4	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--4	chrX:71088253	C	NA	45	0	45	65.844	6.230	0	0	0	45	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--5	chrX:71088253	C	NA	40	0	40	65.900	5.358	0	0	0	40	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--6	chrX:71088253	C	NA	38	0	38	66.632	5.329	0	0	0	38	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--7	chrX:71088253	C	NA	44	0	44	65.545	7.315	0	0	0	44	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--8	chrX:71088253	C	T	30	0.033	29	65.207	8.541	1	68.000	0.000	29	1	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--GL	chrX:71088253	C	NA	35	0	35	66.143	5.483	0	0	0	35	0	CXorf49B(dist=101202),NHSL2(dist=42685)	intergenic	NA
RCC_T3--1	chrX:85105006	G	A	54	0.185	43	68.256	5.465	10	67.800	3.048	43	10	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--2	chrX:85105006	G	A	69	0.159	58	68.948	3.541	11	69.273	3.165	58	11	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--3	chrX:85105006	G	A	78	0.244	59	66.034	9.303	19	68.737	4.420	59	19	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--4	chrX:85105006	G	A	78	0.192	63	68.429	5.656	15	67.667	5.984	63	15	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--5	chrX:85105006	G	A	75	0.027	73	69.671	2.688	2	69.500	2.121	73	2	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--6	chrX:85105006	G	A	87	0.080	80	68.737	3.434	7	68.143	3.237	80	7	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--7	chrX:85105006	G	A	59	0.136	51	68.843	4.465	8	67.250	5.007	51	8	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--8	chrX:85105006	G	A	57	0.193	46	69.174	3.485	11	68.000	4.604	46	11	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--GL	chrX:85105006	G	NA	78	0	78	67.833	5.767	0	0	0	78	0	POF1B(dist=470258),CHM(dist=11179)	intergenic	NA
RCC_T3--1	chrX:9786980	A	NA	32	0	32	66.125	4.824	0	0	0	32	0	SHROOM2	intronic	NA
RCC_T3--2	chrX:9786980	A	NA	41	0	41	68.244	3.015	0	0	0	41	0	SHROOM2	intronic	NA
RCC_T3--3	chrX:9786980	A	NA	32	0	32	64.469	8.108	0	0	0	32	0	SHROOM2	intronic	NA
RCC_T3--4	chrX:9786980	A	T	42	0.167	35	65.257	8.385	7	61.000	12.884	35	7	SHROOM2	intronic	NA
RCC_T3--5	chrX:9786980	A	NA	28	0	28	66.250	8.017	0	0	0	28	0	SHROOM2	intronic	NA
RCC_T3--6	chrX:9786980	A	T	49	0.020	48	66.917	4.262	1	40.000	0.000	48	1	SHROOM2	intronic	NA
RCC_T3--7	chrX:9786980	A	NA	36	0	36	68.278	3.266	0	0	0	36	0	SHROOM2	intronic	NA
RCC_T3--8	chrX:9786980	A	NA	47	0	47	63.787	10.533	0	0	0	47	0	SHROOM2	intronic	NA
RCC_T3--GL	chrX:9786980	A	NA	33	0	33	66.394	4.054	0	0	0	33	0	SHROOM2	intronic	NA
RCC_T4--1	chr10:101458548	A	G	94	0.011	93	63.925	9.237	1	33.000	0.000	93	1	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:101458548	A	NA	82	0	82	63.598	8.136	0	0	0	82	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:101458548	A	G	72	0.167	60	63.317	7.866	12	65.667	3.551	60	12	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:101458548	A	NA	61	0	61	64.279	7.699	0	0	0	61	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:101458548	A	NA	97	0	96	63.510	7.827	0	0	0	96	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:101458548	A	NA	59	0	59	63.847	8.822	0	0	0	59	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:101458548	A	NA	95	0	95	62.789	10.405	0	0	0	95	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:101458548	A	NA	61	0	61	64.344	7.705	0	0	0	61	0	ENTPD7	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:103907125	C	NA	90	0	90	64.278	8.315	0	0	0	90	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:103907125	C	NA	74	0	74	63.432	8.618	0	0	0	74	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:103907125	C	T	61	0.148	52	63.596	10.049	9	63.444	7.073	52	9	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:103907125	C	NA	79	0	79	64.696	8.222	0	0	0	79	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:103907125	C	NA	66	0	66	65.212	7.957	0	0	0	66	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:103907125	C	NA	77	0	77	64.623	6.745	0	0	0	77	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:103907125	C	NA	72	0	72	64.083	6.353	0	0	0	72	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:103907125	C	NA	54	0	54	65.426	6.960	0	0	0	54	0	PPRC1	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:105154067	C	T	151	0.225	116	62.388	12.264	34	64.529	8.012	116	34	MIR1307	ncRNA_exonic	NA
RCC_T4--2	chr10:105154067	C	T	103	0.146	88	62.307	11.939	15	63.267	9.308	88	15	MIR1307	ncRNA_exonic	NA
RCC_T4--3	chr10:105154067	C	T	81	0.235	62	65.016	7.515	19	62.895	9.079	62	19	MIR1307	ncRNA_exonic	NA
RCC_T4--4	chr10:105154067	C	T	105	0.190	84	64.131	10.159	20	64.250	9.324	84	20	MIR1307	ncRNA_exonic	NA
RCC_T4--5	chr10:105154067	C	T	129	0.310	87	62.333	10.900	40	63.975	9.973	87	40	MIR1307	ncRNA_exonic	NA
RCC_T4--6	chr10:105154067	C	T	104	0.413	59	64.068	10.867	43	62.907	10.328	59	43	MIR1307	ncRNA_exonic	NA
RCC_T4--7	chr10:105154067	C	T	78	0.397	47	62.106	12.866	31	64.419	10.417	47	31	MIR1307	ncRNA_exonic	NA
RCC_T4--GL	chr10:105154067	C	NA	114	0	114	64.386	10.001	0	0	0	114	0	MIR1307	ncRNA_exonic	NA
RCC_T4--1	chr10:105350089	G	NA	35	0	35	65.314	8.274	0	0	0	35	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:105350089	G	NA	23	0	23	67.565	4.251	0	0	0	23	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:105350089	G	NA	36	0	36	65.611	7.307	0	0	0	36	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:105350089	G	NA	38	0	38	64.553	9.750	0	0	0	38	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:105350089	G	NA	34	0	34	62.618	10.663	0	0	0	34	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:105350089	G	NA	48	0	48	63.271	9.640	0	0	0	48	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:105350089	G	A	38	0.158	32	64.406	6.430	6	62.000	7.746	32	6	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:105350089	G	NA	41	0	41	66.902	6.644	0	0	0	41	0	NEURL1	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:118628274	C	NA	33	0	33	67.091	5.399	0	0	0	33	0	ENO4	intronic	NA
RCC_T4--2	chr10:118628274	C	NA	39	0	39	67.333	4.820	0	0	0	39	0	ENO4	intronic	NA
RCC_T4--3	chr10:118628274	C	A	34	0.029	33	69.061	4.956	1	39.000	0.000	33	1	ENO4	intronic	NA
RCC_T4--4	chr10:118628274	C	NA	34	0	34	67.471	5.858	0	0	0	34	0	ENO4	intronic	NA
RCC_T4--5	chr10:118628274	C	A	42	0.143	36	67.472	7.618	6	65.333	3.559	36	6	ENO4	intronic	NA
RCC_T4--6	chr10:118628274	C	NA	41	0	41	67.878	4.434	0	0	0	41	0	ENO4	intronic	NA
RCC_T4--7	chr10:118628274	C	NA	52	0	52	68.269	4.326	0	0	0	52	0	ENO4	intronic	NA
RCC_T4--GL	chr10:118628274	C	NA	59	0	59	69.136	3.054	0	0	0	59	0	ENO4	intronic	NA
RCC_T4--1	chr10:120354426	T	NA	28	0	28	57.107	10.082	0	0	0	28	0	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:120354426	T	G	28	0.036	27	56.556	12.214	1	36.000	0.000	27	1	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:120354426	T	G	26	0.231	20	56.950	12.829	6	34.000	1.549	20	6	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:120354426	T	G	29	0.069	27	55.889	11.181	2	37.000	0.000	27	2	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:120354426	T	G	38	0.079	35	59.114	11.529	3	37.667	5.033	35	3	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:120354426	T	G	38	0.105	33	58.727	11.372	4	36.500	4.726	33	4	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:120354426	T	G	41	0.073	38	61.184	9.484	3	35.000	1.732	38	3	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:120354426	T	NA	36	0	36	62.000	8.194	0	0	0	36	0	PRLHR	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:123987270	T	NA	66	0	66	68.621	5.582	0	0	0	66	0	TACC2	intronic	NA
RCC_T4--2	chr10:123987270	T	NA	58	0	58	66.759	5.168	0	0	0	58	0	TACC2	intronic	NA
RCC_T4--3	chr10:123987270	T	NA	60	0	60	68.983	3.680	0	0	0	60	0	TACC2	intronic	NA
RCC_T4--4	chr10:123987270	T	NA	60	0	60	69.183	4.568	0	0	0	60	0	TACC2	intronic	NA
RCC_T4--5	chr10:123987270	T	NA	70	0	70	67.600	5.716	0	0	0	70	0	TACC2	intronic	NA
RCC_T4--6	chr10:123987270	T	C	54	0.111	48	67.250	7.408	6	66.500	2.345	48	6	TACC2	intronic	NA
RCC_T4--7	chr10:123987270	T	NA	64	0	64	69.094	3.126	0	0	0	64	0	TACC2	intronic	NA
RCC_T4--GL	chr10:123987270	T	NA	58	0	58	69.138	5.450	0	0	0	58	0	TACC2	intronic	NA
RCC_T4--1	chr10:132183	T	NA	36	0	36	65.028	6.996	0	0	0	36	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--2	chr10:132183	T	NA	45	0	45	65.244	6.699	0	0	0	45	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--3	chr10:132183	T	A	33	0.121	29	65.690	5.015	4	59.750	18.283	29	4	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--4	chr10:132183	T	NA	32	0	32	65.688	8.555	0	0	0	32	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--5	chr10:132183	T	NA	32	0	32	65.469	7.763	0	0	0	32	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--6	chr10:132183	T	A	40	0.025	39	63.538	10.612	1	33.000	0.000	39	1	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--7	chr10:132183	T	NA	33	0	33	67.970	2.910	0	0	0	33	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--GL	chr10:132183	T	NA	33	0	33	65.636	4.422	0	0	0	33	0	TUBB8(dist=37005),ZMYND11(dist=48222)	intergenic	NA
RCC_T4--1	chr10:134137572	C	NA	24	0	24	68.958	2.836	0	0	0	24	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--2	chr10:134137572	C	NA	21	0	21	69.190	3.558	0	0	0	21	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--3	chr10:134137572	C	NA	18	0	17	68.529	2.853	0	0	0	17	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--4	chr10:134137572	C	NA	18	0	18	66.667	6.408	0	0	0	18	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--5	chr10:134137572	C	NA	27	0	27	66.667	6.045	0	0	0	27	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--6	chr10:134137572	C	A	17	0.176	14	68.071	4.497	3	64.000	4.359	14	3	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--7	chr10:134137572	C	NA	22	0	22	68.364	3.402	0	0	0	22	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--GL	chr10:134137572	C	NA	36	0	36	66.028	8.279	0	0	0	36	0	STK32C(dist=16095),LRRC27(dist=8042)	intergenic	NA
RCC_T4--1	chr10:134721923	G	NA	50	0	50	63.640	8.691	0	0	0	50	0	TTC40	intronic	NA
RCC_T4--2	chr10:134721923	G	NA	54	0	54	60.000	10.520	0	0	0	54	0	TTC40	intronic	NA
RCC_T4--3	chr10:134721923	G	NA	51	0	51	60.686	9.842	0	0	0	51	0	TTC40	intronic	NA
RCC_T4--4	chr10:134721923	G	NA	57	0	57	64.649	7.539	0	0	0	57	0	TTC40	intronic	NA
RCC_T4--5	chr10:134721923	G	NA	54	0	54	63.556	9.745	0	0	0	54	0	TTC40	intronic	NA
RCC_T4--6	chr10:134721923	G	A	72	0.111	64	63.703	8.613	8	61.750	8.972	64	8	TTC40	intronic	NA
RCC_T4--7	chr10:134721923	G	A	67	0.015	66	64.985	7.070	1	72.000	0.000	66	1	TTC40	intronic	NA
RCC_T4--GL	chr10:134721923	G	NA	39	0	39	62.897	9.599	0	0	0	39	0	TTC40	intronic	NA
RCC_T4--1	chr10:15138849	C	NA	75	0	75	66.907	6.531	0	0	0	75	0	C10orf111	UTR5	NA
RCC_T4--2	chr10:15138849	C	NA	68	0	68	65.765	8.597	0	0	0	68	0	C10orf111	UTR5	NA
RCC_T4--3	chr10:15138849	C	NA	42	0	42	66.429	6.523	0	0	0	42	0	C10orf111	UTR5	NA
RCC_T4--4	chr10:15138849	C	A	58	0.103	52	65.769	6.927	6	67.333	3.724	52	6	C10orf111	UTR5	NA
RCC_T4--5	chr10:15138849	C	NA	62	0	62	65.903	7.600	0	0	0	62	0	C10orf111	UTR5	NA
RCC_T4--6	chr10:15138849	C	NA	68	0	68	66.382	7.246	0	0	0	68	0	C10orf111	UTR5	NA
RCC_T4--7	chr10:15138849	C	NA	50	0	50	64.780	9.558	0	0	0	50	0	C10orf111	UTR5	NA
RCC_T4--GL	chr10:15138849	C	NA	62	0	62	65.790	6.734	0	0	0	62	0	C10orf111	UTR5	NA
RCC_T4--1	chr10:18804041	C	NA	38	0	38	68.684	3.534	0	0	0	38	0	CACNB2	intronic	NA
RCC_T4--2	chr10:18804041	C	NA	25	0	25	65.840	6.408	0	0	0	25	0	CACNB2	intronic	NA
RCC_T4--3	chr10:18804041	C	NA	47	0	47	65.128	7.643	0	0	0	47	0	CACNB2	intronic	NA
RCC_T4--4	chr10:18804041	C	A	30	0.133	26	66.885	7.665	4	70.500	1.000	26	4	CACNB2	intronic	NA
RCC_T4--5	chr10:18804041	C	NA	40	0	40	67.825	4.867	0	0	0	40	0	CACNB2	intronic	NA
RCC_T4--6	chr10:18804041	C	NA	42	0	42	67.190	5.869	0	0	0	42	0	CACNB2	intronic	NA
RCC_T4--7	chr10:18804041	C	NA	28	0	28	68.857	2.272	0	0	0	28	0	CACNB2	intronic	NA
RCC_T4--GL	chr10:18804041	C	NA	34	0	34	68.147	3.569	0	0	0	34	0	CACNB2	intronic	NA
RCC_T4--1	chr10:18807913	T	NA	210	0	210	66.648	5.752	0	0	0	210	0	CACNB2	intronic	NA
RCC_T4--2	chr10:18807913	T	NA	217	0	217	65.525	5.992	0	0	0	217	0	CACNB2	intronic	NA
RCC_T4--3	chr10:18807913	T	NA	148	0	148	65.264	7.175	0	0	0	148	0	CACNB2	intronic	NA
RCC_T4--4	chr10:18807913	T	C	223	0.004	222	65.757	6.692	1	63.000	0.000	222	1	CACNB2	intronic	NA
RCC_T4--5	chr10:18807913	T	NA	161	0	161	66.429	4.923	0	0	0	161	0	CACNB2	intronic	NA
RCC_T4--6	chr10:18807913	T	C	209	0.321	142	65.845	6.443	67	66.299	6.769	142	67	CACNB2	intronic	NA
RCC_T4--7	chr10:18807913	T	NA	158	0	158	66.443	5.316	0	0	0	158	0	CACNB2	intronic	NA
RCC_T4--GL	chr10:18807913	T	NA	169	0	169	65.882	5.891	0	0	0	169	0	CACNB2	intronic	NA
RCC_T4--1	chr10:28030414	T	C	50	0.020	49	55.327	11.101	1	37.000	0.000	49	1	MKX	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:28030414	T	C	24	0.042	23	57.174	12.108	1	33.000	0.000	23	1	MKX	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:28030414	T	C	17	0.235	13	51.385	14.523	4	33.000	0.000	13	4	MKX	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:28030414	T	C	28	0.071	26	53.115	13.225	2	33.000	0.000	26	2	MKX	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:28030414	T	NA	31	0	30	55.967	13.907	0	0	0	30	0	MKX	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:28030414	T	C	37	0.081	34	55.235	11.993	3	33.000	0.000	34	3	MKX	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:28030414	T	C	41	0.195	33	52.121	12.459	8	35.500	4.629	33	8	MKX	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:28030414	T	NA	33	0	33	54.758	12.587	0	0	0	33	0	MKX	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:30984824	T	NA	19	0	19	67.737	5.414	0	0	0	19	0	SVILP1	ncRNA_intronic	NA
RCC_T4--2	chr10:30984824	T	NA	23	0	23	67.739	3.708	0	0	0	23	0	SVILP1	ncRNA_intronic	NA
RCC_T4--3	chr10:30984824	T	NA	12	0	12	69.500	1.931	0	0	0	12	0	SVILP1	ncRNA_intronic	NA
RCC_T4--4	chr10:30984824	T	G	25	0.160	21	68.286	3.085	4	57.250	16.276	21	4	SVILP1	ncRNA_intronic	NA
RCC_T4--5	chr10:30984824	T	NA	23	0	23	68.826	3.750	0	0	0	23	0	SVILP1	ncRNA_intronic	NA
RCC_T4--6	chr10:30984824	T	NA	13	0	13	67.769	5.570	0	0	0	13	0	SVILP1	ncRNA_intronic	NA
RCC_T4--7	chr10:30984824	T	NA	22	0	22	69.000	3.381	0	0	0	22	0	SVILP1	ncRNA_intronic	NA
RCC_T4--GL	chr10:30984824	T	NA	34	0	34	68.265	3.848	0	0	0	34	0	SVILP1	ncRNA_intronic	NA
RCC_T4--1	chr10:37443352	G	NA	38	0	38	69.237	3.225	0	0	0	38	0	ANKRD30A	intronic	NA
RCC_T4--2	chr10:37443352	G	NA	33	0	33	67.182	7.029	0	0	0	33	0	ANKRD30A	intronic	NA
RCC_T4--3	chr10:37443352	G	NA	28	0	28	68.286	4.108	0	0	0	28	0	ANKRD30A	intronic	NA
RCC_T4--4	chr10:37443352	G	C	28	0.143	23	65.783	8.464	4	61.000	1.414	23	4	ANKRD30A	intronic	NA
RCC_T4--5	chr10:37443352	G	NA	38	0	38	67.763	5.410	0	0	0	38	0	ANKRD30A	intronic	NA
RCC_T4--6	chr10:37443352	G	NA	33	0	33	68.939	2.761	0	0	0	33	0	ANKRD30A	intronic	NA
RCC_T4--7	chr10:37443352	G	NA	22	0	22	69.818	2.557	0	0	0	22	0	ANKRD30A	intronic	NA
RCC_T4--GL	chr10:37443352	G	NA	45	0	45	66.356	6.474	0	0	0	45	0	ANKRD30A	intronic	NA
RCC_T4--1	chr10:50121651	C	T	59	0.373	37	66.595	3.876	22	67.364	4.865	37	22	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:50121651	C	T	64	0.266	47	62.894	8.101	17	64.471	6.578	47	17	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:50121651	C	T	72	0.333	47	64.936	7.146	24	62.875	9.345	47	24	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:50121651	C	T	67	0.194	54	65.815	4.256	13	61.538	9.252	54	13	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:50121651	C	T	66	0.242	50	64.000	8.792	16	64.312	7.264	50	16	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:50121651	C	T	82	0.049	78	64.782	7.212	4	64.250	5.123	78	4	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:50121651	C	T	65	0.308	45	65.467	6.458	20	65.800	5.473	45	20	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:50121651	C	NA	72	0	72	64.375	8.139	0	0	0	72	0	LRRC18	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:54173064	G	NA	101	0	101	69.109	3.638	0	0	0	101	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--2	chr10:54173064	G	NA	129	0	129	69.070	3.821	0	0	0	129	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--3	chr10:54173064	G	NA	104	0	104	68.317	4.812	0	0	0	104	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--4	chr10:54173064	G	NA	98	0	98	69.133	3.164	0	0	0	98	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--5	chr10:54173064	G	NA	134	0	134	68.604	4.583	0	0	0	134	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--6	chr10:54173064	G	A	103	0.252	76	67.539	6.409	26	68.615	4.070	76	26	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--7	chr10:54173064	G	NA	130	0	130	69.515	2.694	0	0	0	130	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--GL	chr10:54173064	G	NA	118	0	118	68.466	5.088	0	0	0	118	0	DKK1(dist=95647),MBL2(dist=352076)	intergenic	NA
RCC_T4--1	chr10:5948194	C	NA	52	0	52	65.538	8.732	0	0	0	52	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:5948194	C	NA	65	0	64	63.969	8.391	0	0	0	64	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:5948194	C	A	63	0.111	56	64.339	7.789	7	57.429	8.264	56	7	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:5948194	C	NA	59	0	59	62.915	9.222	0	0	0	59	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:5948194	C	NA	78	0	78	64.987	7.323	0	0	0	78	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:5948194	C	NA	88	0	88	64.159	8.736	0	0	0	88	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:5948194	C	NA	65	0	64	64.906	7.294	0	0	0	64	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:5948194	C	NA	66	0	66	63.758	8.743	0	0	0	66	0	FBXO18	exonic	nonsynonymous_SNV
RCC_T4--1	chr10:71657143	T	NA	27	0	27	54.444	11.699	0	0	0	27	0	COL13A1	intronic	NA
RCC_T4--2	chr10:71657143	T	G	24	0.167	20	53.400	10.023	4	38.750	4.193	20	4	COL13A1	intronic	NA
RCC_T4--3	chr10:71657143	T	NA	21	0	21	51.238	11.027	0	0	0	21	0	COL13A1	intronic	NA
RCC_T4--4	chr10:71657143	T	G	16	0.062	15	54.867	10.190	1	36.000	0.000	15	1	COL13A1	intronic	NA
RCC_T4--5	chr10:71657143	T	G	18	0.056	16	52.438	12.165	1	45.000	0.000	16	1	COL13A1	intronic	NA
RCC_T4--6	chr10:71657143	T	G	23	0.087	20	52.700	10.761	2	35.000	2.828	20	2	COL13A1	intronic	NA
RCC_T4--7	chr10:71657143	T	G	30	0.033	28	54.071	10.121	1	33.000	0.000	28	1	COL13A1	intronic	NA
RCC_T4--GL	chr10:71657143	T	NA	37	0	37	56.811	9.312	0	0	0	37	0	COL13A1	intronic	NA
RCC_T4--1	chr10:73572670	G	C	55	0.109	48	65.208	7.906	6	59.500	13.202	48	6	CDH23	intronic	NA
RCC_T4--2	chr10:73572670	G	NA	39	0	39	65.103	7.511	0	0	0	39	0	CDH23	intronic	NA
RCC_T4--3	chr10:73572670	G	NA	48	0	48	67.938	4.304	0	0	0	48	0	CDH23	intronic	NA
RCC_T4--4	chr10:73572670	G	NA	48	0	48	65.979	6.449	0	0	0	48	0	CDH23	intronic	NA
RCC_T4--5	chr10:73572670	G	NA	61	0	61	65.459	6.798	0	0	0	61	0	CDH23	intronic	NA
RCC_T4--6	chr10:73572670	G	NA	51	0	51	64.353	8.681	0	0	0	51	0	CDH23	intronic	NA
RCC_T4--7	chr10:73572670	G	NA	53	0	53	63.245	8.604	0	0	0	53	0	CDH23	intronic	NA
RCC_T4--GL	chr10:73572670	G	NA	34	0	34	63.353	9.082	0	0	0	34	0	CDH23	intronic	NA
RCC_T4--1	chr10:81923076	A	NA	58	0	58	65.103	7.675	0	0	0	58	0	ANXA11	intronic	NA
RCC_T4--2	chr10:81923076	A	NA	39	0	39	65.769	6.413	0	0	0	39	0	ANXA11	intronic	NA
RCC_T4--3	chr10:81923076	A	NA	31	0	31	66.194	5.890	0	0	0	31	0	ANXA11	intronic	NA
RCC_T4--4	chr10:81923076	A	G	33	0.121	29	68.310	3.274	4	64.250	1.708	29	4	ANXA11	intronic	NA
RCC_T4--5	chr10:81923076	A	NA	31	0	31	65.581	7.018	0	0	0	31	0	ANXA11	intronic	NA
RCC_T4--6	chr10:81923076	A	NA	37	0	37	66.351	7.177	0	0	0	37	0	ANXA11	intronic	NA
RCC_T4--7	chr10:81923076	A	NA	30	0	30	67.600	3.775	0	0	0	30	0	ANXA11	intronic	NA
RCC_T4--GL	chr10:81923076	A	NA	41	0	41	64.756	7.943	0	0	0	41	0	ANXA11	intronic	NA
RCC_T4--1	chr10:88418441	T	NA	48	0	48	65.146	7.095	0	0	0	48	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--2	chr10:88418441	T	NA	54	0	54	66.389	6.305	0	0	0	54	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--3	chr10:88418441	T	NA	72	0	72	65.389	8.903	0	0	0	72	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--4	chr10:88418441	T	C	53	0.113	47	67.043	3.470	6	64.167	4.021	47	6	OPN4	exonic	nonsynonymous_SNV
RCC_T4--5	chr10:88418441	T	NA	57	0	57	65.614	6.803	0	0	0	57	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--6	chr10:88418441	T	NA	58	0	58	68.293	3.293	0	0	0	58	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--7	chr10:88418441	T	NA	68	0	67	65.970	6.375	0	0	0	67	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr10:88418441	T	NA	34	0	34	64.382	8.424	0	0	0	34	0	OPN4	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:103462876	T	A	29	0.345	19	69.000	3.464	10	67.200	3.824	19	10	COL11A1	intronic	NA
RCC_T4--2	chr1:103462876	T	A	32	0.344	21	69.714	3.019	11	69.364	3.202	21	11	COL11A1	intronic	NA
RCC_T4--3	chr1:103462876	T	A	42	0.238	32	68.031	5.677	10	69.500	2.121	32	10	COL11A1	intronic	NA
RCC_T4--4	chr1:103462876	T	A	32	0.219	25	67.320	4.366	7	67.714	9.142	25	7	COL11A1	intronic	NA
RCC_T4--5	chr1:103462876	T	A	55	0.400	33	67.727	5.174	22	67.909	3.235	33	22	COL11A1	intronic	NA
RCC_T4--6	chr1:103462876	T	A	40	0.325	26	68.423	3.797	13	66.615	5.810	26	13	COL11A1	intronic	NA
RCC_T4--7	chr1:103462876	T	A	43	0.326	29	67.379	5.551	14	68.714	3.221	29	14	COL11A1	intronic	NA
RCC_T4--GL	chr1:103462876	T	NA	43	0	43	67.372	5.884	0	0	0	43	0	COL11A1	intronic	NA
RCC_T4--1	chr1:109810591	T	NA	19	0	19	62.263	7.773	0	0	0	19	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:109810591	T	NA	31	0	31	62.839	6.435	0	0	0	31	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:109810591	T	NA	18	0	18	61.000	9.356	0	0	0	18	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:109810591	T	NA	25	0	25	60.400	9.557	0	0	0	25	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:109810591	T	NA	36	0	36	61.694	7.902	0	0	0	36	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:109810591	T	NA	23	0	23	59.609	11.389	0	0	0	23	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:109810591	T	C	27	0.148	23	62.565	9.075	4	61.750	7.228	23	4	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:109810591	T	NA	37	0	37	63.027	7.399	0	0	0	37	0	CELSR2	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:102233583	G	NA	48	0	48	68.354	3.594	0	0	0	48	0	BIRC2	intronic	NA
RCC_T4--2	chr11:102233583	G	NA	49	0	49	68.388	3.867	0	0	0	49	0	BIRC2	intronic	NA
RCC_T4--3	chr11:102233583	G	NA	43	0	42	68.333	5.568	0	0	0	42	0	BIRC2	intronic	NA
RCC_T4--4	chr11:102233583	G	NA	63	0	63	68.556	3.693	0	0	0	63	0	BIRC2	intronic	NA
RCC_T4--5	chr11:102233583	G	NA	55	0	55	69.618	3.124	0	0	0	55	0	BIRC2	intronic	NA
RCC_T4--6	chr11:102233583	G	NA	61	0	61	68.623	4.132	0	0	0	61	0	BIRC2	intronic	NA
RCC_T4--7	chr11:102233583	G	C	62	0.323	42	69.214	4.359	20	68.700	3.045	42	20	BIRC2	intronic	NA
RCC_T4--GL	chr11:102233583	G	NA	40	0	40	67.075	7.430	0	0	0	40	0	BIRC2	intronic	NA
RCC_T4--1	chr11:1028841	G	NA	71	0	71	66.127	6.050	0	0	0	71	0	MUC6	intronic	NA
RCC_T4--2	chr11:1028841	G	NA	42	0	42	64.381	5.387	0	0	0	42	0	MUC6	intronic	NA
RCC_T4--3	chr11:1028841	G	NA	42	0	42	62.810	8.388	0	0	0	42	0	MUC6	intronic	NA
RCC_T4--4	chr11:1028841	G	A	39	0.026	38	64.526	7.992	1	33.000	0.000	38	1	MUC6	intronic	NA
RCC_T4--5	chr11:1028841	G	NA	59	0	59	65.356	7.381	0	0	0	59	0	MUC6	intronic	NA
RCC_T4--6	chr11:1028841	G	A	59	0.339	39	63.615	8.975	20	62.300	8.240	39	20	MUC6	intronic	NA
RCC_T4--7	chr11:1028841	G	NA	52	0	51	64.157	7.038	0	0	0	51	0	MUC6	intronic	NA
RCC_T4--GL	chr11:1028841	G	NA	54	0	54	61.648	8.703	0	0	0	54	0	MUC6	intronic	NA
RCC_T4--1	chr1:110561261	C	A	24	0.167	20	65.700	8.880	4	64.750	1.258	20	4	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:110561261	C	NA	29	0	29	64.586	8.471	0	0	0	29	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:110561261	C	NA	23	0	23	67.000	4.178	0	0	0	23	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:110561261	C	NA	27	0	27	65.963	8.286	0	0	0	27	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:110561261	C	NA	22	0	22	66.591	4.954	0	0	0	22	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:110561261	C	NA	25	0	25	66.000	5.859	0	0	0	25	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:110561261	C	NA	44	0	44	65.773	6.864	0	0	0	44	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:110561261	C	NA	39	0	39	65.846	8.084	0	0	0	39	0	AHCYL1	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:110479555	A	NA	23	0	23	69.783	2.152	0	0	0	23	0	ARHGAP20	intronic	NA
RCC_T4--2	chr11:110479555	A	NA	27	0	27	67.370	4.030	0	0	0	27	0	ARHGAP20	intronic	NA
RCC_T4--3	chr11:110479555	A	G	29	0.172	24	68.833	2.792	5	69.400	2.881	24	5	ARHGAP20	intronic	NA
RCC_T4--4	chr11:110479555	A	NA	28	0	28	67.750	3.586	0	0	0	28	0	ARHGAP20	intronic	NA
RCC_T4--5	chr11:110479555	A	NA	19	0	19	66.684	8.945	0	0	0	19	0	ARHGAP20	intronic	NA
RCC_T4--6	chr11:110479555	A	NA	28	0	28	68.143	3.941	0	0	0	28	0	ARHGAP20	intronic	NA
RCC_T4--7	chr11:110479555	A	NA	35	0	35	67.171	7.606	0	0	0	35	0	ARHGAP20	intronic	NA
RCC_T4--GL	chr11:110479555	A	NA	39	0	39	68.385	3.446	0	0	0	39	0	ARHGAP20	intronic	NA
RCC_T4--1	chr11:117053421	T	NA	38	0	38	58.026	11.000	0	0	0	38	0	SIDT2	intronic	NA
RCC_T4--2	chr11:117053421	T	C	45	0.022	44	57.977	11.019	1	33.000	0.000	44	1	SIDT2	intronic	NA
RCC_T4--3	chr11:117053421	T	C	27	0.185	22	60.273	9.402	5	39.600	12.641	22	5	SIDT2	intronic	NA
RCC_T4--4	chr11:117053421	T	NA	39	0	39	56.308	13.023	0	0	0	39	0	SIDT2	intronic	NA
RCC_T4--5	chr11:117053421	T	NA	49	0	49	56.673	12.643	0	0	0	49	0	SIDT2	intronic	NA
RCC_T4--6	chr11:117053421	T	C	44	0.023	43	56.814	11.406	1	36.000	0.000	43	1	SIDT2	intronic	NA
RCC_T4--7	chr11:117053421	T	NA	45	0	45	60.533	9.944	0	0	0	45	0	SIDT2	intronic	NA
RCC_T4--GL	chr11:117053421	T	NA	47	0	47	61.383	10.391	0	0	0	47	0	SIDT2	intronic	NA
RCC_T4--1	chr11:119029365	C	G	172	0.256	127	65.921	5.984	44	66.727	4.299	127	44	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:119029365	C	G	155	0.381	95	64.305	8.429	59	65.831	4.811	95	59	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:119029365	C	G	164	0.268	120	64.675	6.829	44	64.023	8.631	120	44	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:119029365	C	G	195	0.241	148	65.466	7.104	47	64.277	7.909	148	47	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:119029365	C	G	147	0.354	95	65.179	6.656	52	66.577	8.242	95	52	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:119029365	C	G	187	0.048	178	64.393	8.206	9	62.778	9.351	178	9	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:119029365	C	G	182	0.352	117	64.376	7.831	64	65.703	5.703	117	64	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:119029365	C	NA	144	0	144	65.562	6.120	0	0	0	144	0	ABCG4	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:111992310	A	NA	59	0	59	65.085	8.127	0	0	0	59	0	ATP5F1	intronic	NA
RCC_T4--2	chr1:111992310	A	NA	62	0	62	63.226	7.910	0	0	0	62	0	ATP5F1	intronic	NA
RCC_T4--3	chr1:111992310	A	NA	55	0	55	61.782	8.795	0	0	0	55	0	ATP5F1	intronic	NA
RCC_T4--4	chr1:111992310	A	NA	55	0	55	65.291	6.946	0	0	0	55	0	ATP5F1	intronic	NA
RCC_T4--5	chr1:111992310	A	NA	65	0	64	64.344	8.369	0	0	0	64	0	ATP5F1	intronic	NA
RCC_T4--6	chr1:111992310	A	NA	66	0	66	64.197	5.915	0	0	0	66	0	ATP5F1	intronic	NA
RCC_T4--7	chr1:111992310	A	C	70	0.457	38	66.974	4.188	32	65.438	8.557	38	32	ATP5F1	intronic	NA
RCC_T4--GL	chr1:111992310	A	NA	62	0	62	62.597	10.537	0	0	0	62	0	ATP5F1	intronic	NA
RCC_T4--1	chr11:123596637	G	NA	37	0	37	66.081	6.344	0	0	0	37	0	ZNF202	UTR3	NA
RCC_T4--2	chr11:123596637	G	T	41	0.024	40	66.550	6.625	1	39.000	0.000	40	1	ZNF202	UTR3	NA
RCC_T4--3	chr11:123596637	G	T	33	0.121	29	66.828	6.381	4	64.500	4.796	29	4	ZNF202	UTR3	NA
RCC_T4--4	chr11:123596637	G	NA	24	0	24	66.750	7.201	0	0	0	24	0	ZNF202	UTR3	NA
RCC_T4--5	chr11:123596637	G	NA	33	0	33	67.727	3.777	0	0	0	33	0	ZNF202	UTR3	NA
RCC_T4--6	chr11:123596637	G	NA	41	0	41	67.537	4.599	0	0	0	41	0	ZNF202	UTR3	NA
RCC_T4--7	chr11:123596637	G	T	25	0.040	24	68.667	3.130	1	40.000	0.000	24	1	ZNF202	UTR3	NA
RCC_T4--GL	chr11:123596637	G	NA	36	0	36	66.056	6.744	0	0	0	36	0	ZNF202	UTR3	NA
RCC_T4--1	chr11:124946723	A	NA	54	0	54	68.111	5.775	0	0	0	54	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:124946723	A	NA	43	0	43	65.628	5.996	0	0	0	43	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:124946723	A	NA	51	0	50	66.180	5.875	0	0	0	50	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:124946723	A	NA	35	0	35	65.057	7.356	0	0	0	35	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:124946723	A	G	54	0.111	48	66.062	9.258	6	67.333	3.670	48	6	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:124946723	A	NA	40	0	40	68.575	3.178	0	0	0	40	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:124946723	A	NA	31	0	31	68.516	3.192	0	0	0	31	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:124946723	A	NA	37	0	37	67.730	8.218	0	0	0	37	0	SLC37A2	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:114508713	A	NA	98	0	98	67.276	5.060	0	0	0	98	0	HIPK1	intronic	NA
RCC_T4--2	chr1:114508713	A	C	74	0.108	66	67.591	3.934	8	66.125	4.051	66	8	HIPK1	intronic	NA
RCC_T4--3	chr1:114508713	A	NA	82	0	82	67.622	4.060	0	0	0	82	0	HIPK1	intronic	NA
RCC_T4--4	chr1:114508713	A	NA	67	0	67	66.507	6.675	0	0	0	67	0	HIPK1	intronic	NA
RCC_T4--5	chr1:114508713	A	NA	87	0	87	67.678	5.347	0	0	0	87	0	HIPK1	intronic	NA
RCC_T4--6	chr1:114508713	A	NA	86	0	86	66.593	6.759	0	0	0	86	0	HIPK1	intronic	NA
RCC_T4--7	chr1:114508713	A	NA	90	0	90	67.611	5.934	0	0	0	90	0	HIPK1	intronic	NA
RCC_T4--GL	chr1:114508713	A	NA	84	0	84	66.452	7.258	0	0	0	84	0	HIPK1	intronic	NA
RCC_T4--1	chr11:15260571	T	NA	36	0	36	64.667	7.491	0	0	0	36	0	INSC	exonic	synonymous_SNV
RCC_T4--2	chr11:15260571	T	NA	39	0	39	64.077	7.303	0	0	0	39	0	INSC	exonic	synonymous_SNV
RCC_T4--3	chr11:15260571	T	NA	36	0	36	65.111	7.611	0	0	0	36	0	INSC	exonic	synonymous_SNV
RCC_T4--4	chr11:15260571	T	A	41	0.146	35	63.200	9.554	6	50.333	12.580	35	6	INSC	exonic	synonymous_SNV
RCC_T4--5	chr11:15260571	T	NA	33	0	33	64.758	9.294	0	0	0	33	0	INSC	exonic	synonymous_SNV
RCC_T4--6	chr11:15260571	T	NA	41	0	41	64.951	6.881	0	0	0	41	0	INSC	exonic	synonymous_SNV
RCC_T4--7	chr11:15260571	T	NA	22	0	22	66.455	4.778	0	0	0	22	0	INSC	exonic	synonymous_SNV
RCC_T4--GL	chr11:15260571	T	NA	41	0	41	63.366	9.607	0	0	0	41	0	INSC	exonic	synonymous_SNV
RCC_T4--1	chr11:16810891	G	NA	45	0	45	66.311	5.534	0	0	0	45	0	PLEKHA7	intronic	NA
RCC_T4--2	chr11:16810891	G	NA	42	0	42	65.381	5.868	0	0	0	42	0	PLEKHA7	intronic	NA
RCC_T4--3	chr11:16810891	G	A	39	0.128	34	66.176	3.555	5	65.600	1.673	34	5	PLEKHA7	intronic	NA
RCC_T4--4	chr11:16810891	G	NA	35	0	35	64.371	10.044	0	0	0	35	0	PLEKHA7	intronic	NA
RCC_T4--5	chr11:16810891	G	NA	46	0	46	66.326	6.121	0	0	0	46	0	PLEKHA7	intronic	NA
RCC_T4--6	chr11:16810891	G	NA	43	0	43	67.209	3.943	0	0	0	43	0	PLEKHA7	intronic	NA
RCC_T4--7	chr11:16810891	G	NA	40	0	40	64.900	7.860	0	0	0	40	0	PLEKHA7	intronic	NA
RCC_T4--GL	chr11:16810891	G	NA	41	0	41	66.488	6.132	0	0	0	41	0	PLEKHA7	intronic	NA
RCC_T4--1	chr11:18322531	A	NA	39	0	39	69.000	5.405	0	0	0	39	0	HPS5	intronic	NA
RCC_T4--2	chr11:18322531	A	G	24	0.042	23	70.522	2.129	1	71.000	0.000	23	1	HPS5	intronic	NA
RCC_T4--3	chr11:18322531	A	G	37	0.108	33	68.697	2.984	4	69.000	3.464	33	4	HPS5	intronic	NA
RCC_T4--4	chr11:18322531	A	NA	35	0	35	69.343	3.447	0	0	0	35	0	HPS5	intronic	NA
RCC_T4--5	chr11:18322531	A	NA	43	0	43	69.767	4.380	0	0	0	43	0	HPS5	intronic	NA
RCC_T4--6	chr11:18322531	A	NA	48	0	48	69.500	4.519	0	0	0	48	0	HPS5	intronic	NA
RCC_T4--7	chr11:18322531	A	NA	30	0	30	70.867	1.889	0	0	0	30	0	HPS5	intronic	NA
RCC_T4--GL	chr11:18322531	A	NA	36	0	36	68.500	2.893	0	0	0	36	0	HPS5	intronic	NA
RCC_T4--1	chr11:18894823	G	NA	52	0	52	66.596	5.496	0	0	0	52	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--2	chr11:18894823	G	NA	53	0	53	68.189	3.632	0	0	0	53	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--3	chr11:18894823	G	NA	43	0	43	67.930	4.743	0	0	0	43	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--4	chr11:18894823	G	NA	43	0	43	66.558	4.641	0	0	0	43	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--5	chr11:18894823	G	A	54	0.111	48	67.771	3.899	6	66.333	2.733	48	6	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--6	chr11:18894823	G	NA	74	0	74	66.432	6.976	0	0	0	74	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--7	chr11:18894823	G	NA	53	0	53	68.283	5.383	0	0	0	53	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--GL	chr11:18894823	G	NA	52	0	52	66.154	6.229	0	0	0	52	0	PTPN5(dist=80555),MRGPRX1(dist=60537)	intergenic	NA
RCC_T4--1	chr11:1972066	G	NA	46	0	46	68.022	3.296	0	0	0	46	0	MRPL23	intronic	NA
RCC_T4--2	chr11:1972066	G	NA	24	0	24	65.792	7.863	0	0	0	24	0	MRPL23	intronic	NA
RCC_T4--3	chr11:1972066	G	NA	26	0	26	64.769	4.357	0	0	0	26	0	MRPL23	intronic	NA
RCC_T4--4	chr11:1972066	G	NA	42	0	42	66.214	5.749	0	0	0	42	0	MRPL23	intronic	NA
RCC_T4--5	chr11:1972066	G	NA	32	0	32	65.062	8.966	0	0	0	32	0	MRPL23	intronic	NA
RCC_T4--6	chr11:1972066	G	NA	38	0	38	67.026	5.635	0	0	0	38	0	MRPL23	intronic	NA
RCC_T4--7	chr11:1972066	G	T	28	0.143	24	64.792	10.249	4	69.000	1.414	24	4	MRPL23	intronic	NA
RCC_T4--GL	chr11:1972066	G	NA	34	0	34	66.971	5.311	0	0	0	34	0	MRPL23	intronic	NA
RCC_T4--1	chr11:373789	C	A	59	0.102	53	65.528	5.486	6	67.500	2.168	53	6	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:373789	C	NA	58	0	58	66.621	5.650	0	0	0	58	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:373789	C	NA	75	0	74	65.284	6.360	0	0	0	74	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:373789	C	NA	55	0	55	64.945	9.336	0	0	0	55	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:373789	C	NA	61	0	61	65.852	6.615	0	0	0	61	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:373789	C	NA	79	0	79	64.696	7.516	0	0	0	79	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:373789	C	NA	62	0	62	64.774	8.171	0	0	0	62	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:373789	C	NA	37	0	37	67.000	5.672	0	0	0	37	0	B4GALNT4	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:399036	C	NA	64	0	64	66.219	6.245	0	0	0	64	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:399036	C	NA	64	0	64	65.234	6.640	0	0	0	64	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:399036	C	NA	56	0	56	64.000	8.115	0	0	0	56	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:399036	C	NA	55	0	55	65.036	7.657	0	0	0	55	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:399036	C	A	43	0.140	37	65.919	4.271	6	56.333	16.305	37	6	PKP3	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:399036	C	NA	61	0	61	65.984	5.530	0	0	0	61	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:399036	C	NA	54	0	54	65.037	7.366	0	0	0	54	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:399036	C	NA	46	0	46	62.717	11.139	0	0	0	46	0	PKP3	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:14042193	C	G	88	0.159	74	68.797	3.653	14	69.214	3.043	74	14	PRDM2	intronic	NA
RCC_T4--2	chr1:14042193	C	NA	105	0	105	67.867	4.557	0	0	0	105	0	PRDM2	intronic	NA
RCC_T4--3	chr1:14042193	C	NA	86	0	86	67.372	6.360	0	0	0	86	0	PRDM2	intronic	NA
RCC_T4--4	chr1:14042193	C	NA	113	0	112	68.429	3.666	0	0	0	112	0	PRDM2	intronic	NA
RCC_T4--5	chr1:14042193	C	NA	107	0	107	68.439	4.227	0	0	0	107	0	PRDM2	intronic	NA
RCC_T4--6	chr1:14042193	C	NA	115	0	115	69.052	3.813	0	0	0	115	0	PRDM2	intronic	NA
RCC_T4--7	chr1:14042193	C	NA	101	0	101	68.584	4.334	0	0	0	101	0	PRDM2	intronic	NA
RCC_T4--GL	chr1:14042193	C	NA	107	0	107	67.692	8.079	0	0	0	107	0	PRDM2	intronic	NA
RCC_T4--1	chr11:4233243	G	T	46	0.043	44	61.023	11.641	2	40.000	1.414	44	2	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--2	chr11:4233243	G	NA	27	0	26	54.231	14.470	0	0	0	26	0	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--3	chr11:4233243	G	T	31	0.065	29	56.931	11.892	2	41.000	0.000	29	2	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--4	chr11:4233243	G	T	38	0.105	34	60.882	8.506	4	39.750	1.258	34	4	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--5	chr11:4233243	G	T	33	0.091	30	55.900	12.152	3	45.000	5.292	30	3	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--6	chr11:4233243	G	T	41	0.146	35	60.600	10.915	6	44.000	6.812	35	6	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--7	chr11:4233243	G	T	40	0.100	36	60.583	10.937	4	39.000	4.000	36	4	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--GL	chr11:4233243	G	NA	36	0	36	59.889	11.880	0	0	0	36	0	LOC100506082(dist=9360),OR52B4(dist=155250)	intergenic	NA
RCC_T4--1	chr11:47300610	C	NA	109	0	109	68.505	4.122	0	0	0	109	0	MADD	exonic	synonymous_SNV
RCC_T4--2	chr11:47300610	C	T	112	0.196	90	65.533	8.135	22	66.727	5.266	90	22	MADD	exonic	synonymous_SNV
RCC_T4--3	chr11:47300610	C	NA	92	0	92	67.663	5.323	0	0	0	92	0	MADD	exonic	synonymous_SNV
RCC_T4--4	chr11:47300610	C	NA	117	0	117	68.128	5.127	0	0	0	117	0	MADD	exonic	synonymous_SNV
RCC_T4--5	chr11:47300610	C	NA	107	0	107	66.963	7.191	0	0	0	107	0	MADD	exonic	synonymous_SNV
RCC_T4--6	chr11:47300610	C	NA	98	0	98	66.663	7.026	0	0	0	98	0	MADD	exonic	synonymous_SNV
RCC_T4--7	chr11:47300610	C	NA	88	0	88	68.443	3.642	0	0	0	88	0	MADD	exonic	synonymous_SNV
RCC_T4--GL	chr11:47300610	C	NA	119	0	119	68.008	4.779	0	0	0	119	0	MADD	exonic	synonymous_SNV
RCC_T4--1	chr11:49142017	T	NA	83	0	83	66.675	6.113	0	0	0	83	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--2	chr11:49142017	T	NA	98	0	98	65.561	5.796	0	0	0	98	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--3	chr11:49142017	T	C	60	0.017	59	66.034	5.209	1	56.000	0.000	59	1	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--4	chr11:49142017	T	NA	78	0	78	64.731	8.649	0	0	0	78	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--5	chr11:49142017	T	NA	93	0	92	65.120	8.037	0	0	0	92	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--6	chr11:49142017	T	NA	85	0	85	66.247	5.157	0	0	0	85	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--7	chr11:49142017	T	C	84	0.107	74	65.095	7.506	9	65.889	10.301	74	9	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--GL	chr11:49142017	T	NA	119	0	119	65.328	7.996	0	0	0	119	0	TRIM64C(dist=61353),FOLH1(dist=26170)	intergenic	NA
RCC_T4--1	chr1:154600401	A	C	70	0.114	61	52.279	11.290	8	37.500	4.629	61	8	ADAR	UTR5	NA
RCC_T4--2	chr1:154600401	A	C	48	0.125	42	51.667	10.513	6	37.833	8.589	42	6	ADAR	UTR5	NA
RCC_T4--3	chr1:154600401	A	C	39	0.231	30	55.233	10.855	9	37.222	6.099	30	9	ADAR	UTR5	NA
RCC_T4--4	chr1:154600401	A	C	48	0.083	44	51.568	11.482	4	35.000	2.309	44	4	ADAR	UTR5	NA
RCC_T4--5	chr1:154600401	A	C	24	0.208	19	51.211	12.904	5	33.800	1.789	19	5	ADAR	UTR5	NA
RCC_T4--6	chr1:154600401	A	C	47	0.064	42	50.119	11.413	3	48.333	11.240	42	3	ADAR	UTR5	NA
RCC_T4--7	chr1:154600401	A	C	32	0.062	28	54.179	12.608	2	34.500	2.121	28	2	ADAR	UTR5	NA
RCC_T4--GL	chr1:154600401	A	NA	49	0	49	53.449	11.258	0	0	0	49	0	ADAR	UTR5	NA
RCC_T4--1	chr11:55038079	C	NA	296	0	296	68.196	5.247	0	0	0	296	0	TRIM48	UTR3	NA
RCC_T4--2	chr11:55038079	C	NA	307	0	307	67.951	5.443	0	0	0	307	0	TRIM48	UTR3	NA
RCC_T4--3	chr11:55038079	C	G	270	0.004	268	67.974	5.008	1	57.000	0.000	268	1	TRIM48	UTR3	NA
RCC_T4--4	chr11:55038079	C	NA	287	0	287	67.394	6.384	0	0	0	287	0	TRIM48	UTR3	NA
RCC_T4--5	chr11:55038079	C	NA	352	0	351	68.311	4.537	0	0	0	351	0	TRIM48	UTR3	NA
RCC_T4--6	chr11:55038079	C	NA	374	0	374	68.029	4.603	0	0	0	374	0	TRIM48	UTR3	NA
RCC_T4--7	chr11:55038079	C	G	337	0.309	233	67.918	5.560	104	68.192	5.019	233	104	TRIM48	UTR3	NA
RCC_T4--GL	chr11:55038079	C	NA	312	0	312	67.660	5.748	0	0	0	312	0	TRIM48	UTR3	NA
RCC_T4--1	chr1:156146378	G	A	67	0.179	55	67.127	5.611	12	69.250	1.865	55	12	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:156146378	G	NA	60	0	60	66.067	5.105	0	0	0	60	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:156146378	G	A	60	0.017	59	67.695	3.856	1	64.000	0.000	59	1	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:156146378	G	NA	94	0	94	66.394	6.068	0	0	0	94	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:156146378	G	NA	82	0	82	65.683	6.914	0	0	0	82	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:156146378	G	NA	63	0	62	68.113	5.048	0	0	0	62	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:156146378	G	NA	64	0	64	65.906	7.548	0	0	0	64	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:156146378	G	NA	51	0	50	64.940	7.614	0	0	0	50	0	SEMA4A	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:156339091	G	NA	41	0	41	64.463	4.545	0	0	0	41	0	RHBG	exonic	synonymous_SNV
RCC_T4--2	chr1:156339091	G	NA	38	0	38	63.632	8.221	0	0	0	38	0	RHBG	exonic	synonymous_SNV
RCC_T4--3	chr1:156339091	G	NA	32	0	32	64.062	8.576	0	0	0	32	0	RHBG	exonic	synonymous_SNV
RCC_T4--4	chr1:156339091	G	NA	51	0	51	62.902	8.524	0	0	0	51	0	RHBG	exonic	synonymous_SNV
RCC_T4--5	chr1:156339091	G	NA	46	0	46	62.130	8.253	0	0	0	46	0	RHBG	exonic	synonymous_SNV
RCC_T4--6	chr1:156339091	G	A	37	0.108	33	62.788	8.135	4	60.500	7.188	33	4	RHBG	exonic	synonymous_SNV
RCC_T4--7	chr1:156339091	G	NA	39	0	39	64.410	5.955	0	0	0	39	0	RHBG	exonic	synonymous_SNV
RCC_T4--GL	chr1:156339091	G	NA	43	0	42	62.452	7.862	0	0	0	42	0	RHBG	exonic	synonymous_SNV
RCC_T4--1	chr1:15714555	A	NA	28	0	28	66.714	6.531	0	0	0	28	0	FHAD1	intronic	NA
RCC_T4--2	chr1:15714555	A	NA	37	0	37	64.973	6.652	0	0	0	37	0	FHAD1	intronic	NA
RCC_T4--3	chr1:15714555	A	NA	32	0	32	68.031	3.605	0	0	0	32	0	FHAD1	intronic	NA
RCC_T4--4	chr1:15714555	A	NA	39	0	39	66.154	6.957	0	0	0	39	0	FHAD1	intronic	NA
RCC_T4--5	chr1:15714555	A	NA	43	0	43	66.814	3.990	0	0	0	43	0	FHAD1	intronic	NA
RCC_T4--6	chr1:15714555	A	NA	42	0	42	66.905	4.230	0	0	0	42	0	FHAD1	intronic	NA
RCC_T4--7	chr1:15714555	A	T	33	0.121	29	65.690	7.431	4	68.000	2.449	29	4	FHAD1	intronic	NA
RCC_T4--GL	chr1:15714555	A	NA	48	0	48	67.250	6.330	0	0	0	48	0	FHAD1	intronic	NA
RCC_T4--1	chr1:157895066	C	NA	29	0	29	66.414	7.533	0	0	0	29	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--2	chr1:157895066	C	NA	53	0	53	66.075	6.189	0	0	0	53	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--3	chr1:157895066	C	NA	38	0	38	66.342	4.480	0	0	0	38	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--4	chr1:157895066	C	T	35	0.171	29	66.207	5.691	6	60.500	14.557	29	6	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--5	chr1:157895066	C	NA	45	0	45	65.867	6.044	0	0	0	45	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--6	chr1:157895066	C	NA	49	0	49	65.959	6.551	0	0	0	49	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--7	chr1:157895066	C	NA	54	0	54	66.278	4.114	0	0	0	54	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--GL	chr1:157895066	C	NA	44	0	44	66.045	6.748	0	0	0	44	0	CD5L(dist=83432),KIRREL(dist=67997)	intergenic	NA
RCC_T4--1	chr1:158612715	G	NA	125	0	125	67.072	5.491	0	0	0	125	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:158612715	G	NA	130	0	130	66.654	5.872	0	0	0	130	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:158612715	G	NA	126	0	122	66.943	5.792	0	0	0	122	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:158612715	G	NA	114	0	113	66.186	4.640	0	0	0	113	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:158612715	G	T	126	0.008	125	66.592	6.014	1	38.000	0.000	125	1	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:158612715	G	T	140	0.293	99	66.485	6.216	41	67.244	4.769	99	41	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:158612715	G	NA	133	0	133	66.910	6.186	0	0	0	133	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:158612715	G	NA	125	0	125	65.432	7.389	0	0	0	125	0	SPTA1	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:158817849	C	NA	39	0	39	68.615	5.706	0	0	0	39	0	MNDA	intronic	NA
RCC_T4--2	chr1:158817849	C	NA	47	0	47	67.809	4.911	0	0	0	47	0	MNDA	intronic	NA
RCC_T4--3	chr1:158817849	C	NA	29	0	29	69.207	3.986	0	0	0	29	0	MNDA	intronic	NA
RCC_T4--4	chr1:158817849	C	A	27	0.148	23	70.000	2.680	4	63.500	1.732	23	4	MNDA	intronic	NA
RCC_T4--5	chr1:158817849	C	NA	32	0	32	69.562	3.015	0	0	0	32	0	MNDA	intronic	NA
RCC_T4--6	chr1:158817849	C	NA	39	0	39	69.205	3.373	0	0	0	39	0	MNDA	intronic	NA
RCC_T4--7	chr1:158817849	C	A	33	0.030	32	68.906	2.878	1	68.000	0.000	32	1	MNDA	intronic	NA
RCC_T4--GL	chr1:158817849	C	NA	36	0	36	69.222	3.514	0	0	0	36	0	MNDA	intronic	NA
RCC_T4--1	chr1:15956657	G	NA	25	0	25	66.880	6.451	0	0	0	25	0	DDI2	intronic	NA
RCC_T4--2	chr1:15956657	G	NA	41	0	41	67.634	7.466	0	0	0	41	0	DDI2	intronic	NA
RCC_T4--3	chr1:15956657	G	NA	20	0	20	67.650	8.054	0	0	0	20	0	DDI2	intronic	NA
RCC_T4--4	chr1:15956657	G	NA	34	0	34	66.853	6.406	0	0	0	34	0	DDI2	intronic	NA
RCC_T4--5	chr1:15956657	G	NA	20	0	20	68.150	3.801	0	0	0	20	0	DDI2	intronic	NA
RCC_T4--6	chr1:15956657	G	NA	30	0	30	67.500	5.576	0	0	0	30	0	DDI2	intronic	NA
RCC_T4--7	chr1:15956657	G	A	28	0.143	24	66.542	5.564	4	71.500	0.577	24	4	DDI2	intronic	NA
RCC_T4--GL	chr1:15956657	G	NA	35	0	35	67.771	3.979	0	0	0	35	0	DDI2	intronic	NA
RCC_T4--1	chr11:61548187	T	NA	28	0	28	66.571	8.071	0	0	0	28	0	MYRF	exonic	synonymous_SNV
RCC_T4--2	chr11:61548187	T	A	45	0.133	39	68.128	4.503	6	61.000	4.561	39	6	MYRF	exonic	synonymous_SNV
RCC_T4--3	chr11:61548187	T	NA	35	0	35	65.314	6.897	0	0	0	35	0	MYRF	exonic	synonymous_SNV
RCC_T4--4	chr11:61548187	T	NA	39	0	39	67.897	6.464	0	0	0	39	0	MYRF	exonic	synonymous_SNV
RCC_T4--5	chr11:61548187	T	NA	31	0	31	67.806	6.343	0	0	0	31	0	MYRF	exonic	synonymous_SNV
RCC_T4--6	chr11:61548187	T	NA	62	0	62	66.016	7.819	0	0	0	62	0	MYRF	exonic	synonymous_SNV
RCC_T4--7	chr11:61548187	T	NA	58	0	58	67.828	4.206	0	0	0	58	0	MYRF	exonic	synonymous_SNV
RCC_T4--GL	chr11:61548187	T	NA	54	0	54	68.574	3.521	0	0	0	54	0	MYRF	exonic	synonymous_SNV
RCC_T4--1	chr11:62459855	C	NA	38	0	38	65.500	7.051	0	0	0	38	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:62459855	C	NA	38	0	38	67.079	7.194	0	0	0	38	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:62459855	C	NA	40	0	40	66.175	8.196	0	0	0	40	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:62459855	C	NA	32	0	32	66.656	5.356	0	0	0	32	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:62459855	C	A	29	0.138	25	65.080	7.681	4	67.500	4.359	25	4	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:62459855	C	NA	46	0	46	65.543	5.460	0	0	0	46	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:62459855	C	NA	42	0	42	63.286	8.572	0	0	0	42	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:62459855	C	NA	45	0	45	64.800	7.659	0	0	0	45	0	BSCL2	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:16317191	G	NA	66	0	66	66.515	5.444	0	0	0	66	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--2	chr1:16317191	G	NA	57	0	56	63.911	8.861	0	0	0	56	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--3	chr1:16317191	G	NA	41	0	41	66.390	7.526	0	0	0	41	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--4	chr1:16317191	G	NA	49	0	49	65.837	7.051	0	0	0	49	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--5	chr1:16317191	G	NA	32	0	32	62.875	11.106	0	0	0	32	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--6	chr1:16317191	G	NA	58	0	58	63.931	10.075	0	0	0	58	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--7	chr1:16317191	G	A	41	0.122	36	67.139	4.291	5	56.200	9.783	36	5	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--GL	chr1:16317191	G	NA	37	0	37	64.378	8.767	0	0	0	37	0	ZBTB17(dist=14564),C1orf64(dist=13540)	intergenic	NA
RCC_T4--1	chr11:65146905	G	C	54	0.111	48	59.833	12.825	6	33.000	0.000	48	6	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:65146905	G	C	45	0.089	41	65.488	6.384	4	33.000	0.000	41	4	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:65146905	G	C	34	0.088	31	61.968	11.907	3	33.000	0.000	31	3	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:65146905	G	C	28	0.214	22	65.000	8.619	6	33.000	0.000	22	6	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:65146905	G	C	44	0.068	41	60.683	13.412	3	33.000	0.000	41	3	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:65146905	G	C	50	0.060	47	63.745	9.852	3	33.000	0.000	47	3	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:65146905	G	C	45	0.089	41	62.293	10.631	4	33.000	0.000	41	4	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:65146905	G	NA	34	0	33	59.333	12.949	0	0	0	33	0	SLC25A45	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:66102617	G	A	65	0.323	44	63.955	7.974	21	63.048	10.860	44	21	RIN1	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:66102617	G	A	78	0.372	48	64.875	6.893	29	63.207	8.222	48	29	RIN1	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:66102617	G	A	57	0.474	30	64.933	9.674	27	64.333	8.380	30	27	RIN1	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:66102617	G	A	46	0.413	27	63.741	8.406	19	63.368	10.095	27	19	RIN1	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:66102617	G	A	62	0.306	43	64.419	9.148	19	60.368	12.089	43	19	RIN1	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:66102617	G	A	50	0.400	30	60.233	12.142	20	63.650	8.732	30	20	RIN1	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:66102617	G	A	59	0.203	47	61.085	10.780	12	57.333	15.558	47	12	RIN1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:66102617	G	NA	51	0	51	66.098	4.220	0	0	0	51	0	RIN1	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:67218884	T	G	67	0.104	57	58.912	13.662	7	34.714	1.604	57	7	GPR152	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:67218884	T	G	37	0.189	29	62.552	11.271	7	36.429	3.359	29	7	GPR152	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:67218884	T	G	34	0.088	31	59.839	13.508	3	36.667	3.512	31	3	GPR152	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:67218884	T	G	45	0.089	41	61.122	10.708	4	40.750	11.843	41	4	GPR152	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:67218884	T	G	40	0.050	38	59.579	12.545	2	40.000	4.243	38	2	GPR152	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:67218884	T	G	43	0.047	40	61.900	10.233	2	35.000	2.828	40	2	GPR152	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:67218884	T	G	48	0.083	44	64.591	9.935	4	38.000	5.598	44	4	GPR152	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:67218884	T	NA	43	0	43	61.465	11.089	0	0	0	43	0	GPR152	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:16946407	T	G	36	0.083	33	65.970	6.267	3	69.000	3.606	33	3	CROCCP2	ncRNA_exonic	NA
RCC_T4--2	chr1:16946407	T	G	33	0.242	25	62.280	9.352	8	65.250	5.312	25	8	CROCCP2	ncRNA_exonic	NA
RCC_T4--3	chr1:16946407	T	G	36	0.056	34	64.912	6.757	2	68.500	0.707	34	2	CROCCP2	ncRNA_exonic	NA
RCC_T4--4	chr1:16946407	T	G	48	0.021	47	61.596	8.848	1	58.000	0.000	47	1	CROCCP2	ncRNA_exonic	NA
RCC_T4--5	chr1:16946407	T	G	46	0.022	45	64.711	7.798	1	69.000	0.000	45	1	CROCCP2	ncRNA_exonic	NA
RCC_T4--6	chr1:16946407	T	NA	39	0	38	65.474	5.351	0	0	0	38	0	CROCCP2	ncRNA_exonic	NA
RCC_T4--7	chr1:16946407	T	G	29	0.207	23	64.739	4.454	6	67.333	2.066	23	6	CROCCP2	ncRNA_exonic	NA
RCC_T4--GL	chr1:16946407	T	NA	39	0	39	65.949	7.011	0	0	0	39	0	CROCCP2	ncRNA_exonic	NA
RCC_T4--1	chr11:70189770	T	NA	63	0	63	67.825	5.638	0	0	0	63	0	PPFIA1	intronic	NA
RCC_T4--2	chr11:70189770	T	NA	55	0	55	69.255	2.668	0	0	0	55	0	PPFIA1	intronic	NA
RCC_T4--3	chr11:70189770	T	NA	56	0	56	67.786	5.877	0	0	0	56	0	PPFIA1	intronic	NA
RCC_T4--4	chr11:70189770	T	NA	65	0	65	68.923	4.685	0	0	0	65	0	PPFIA1	intronic	NA
RCC_T4--5	chr11:70189770	T	C	67	0.149	57	69.246	2.942	10	67.900	3.957	57	10	PPFIA1	intronic	NA
RCC_T4--6	chr11:70189770	T	NA	67	0	67	68.507	3.305	0	0	0	67	0	PPFIA1	intronic	NA
RCC_T4--7	chr11:70189770	T	NA	62	0	62	69.161	3.026	0	0	0	62	0	PPFIA1	intronic	NA
RCC_T4--GL	chr11:70189770	T	NA	57	0	57	68.175	6.395	0	0	0	57	0	PPFIA1	intronic	NA
RCC_T4--1	chr11:70269103	T	G	67	0.030	65	59.708	12.780	2	35.500	3.536	65	2	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--2	chr11:70269103	T	G	74	0.176	60	60.700	11.751	13	37.308	5.588	60	13	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--3	chr11:70269103	T	G	52	0.115	46	57.609	13.391	6	36.833	5.115	46	6	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--4	chr11:70269103	T	G	63	0.063	58	62.241	10.547	4	40.750	9.142	58	4	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--5	chr11:70269103	T	G	50	0.080	45	62.356	9.941	4	35.500	2.887	45	4	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--6	chr11:70269103	T	G	62	0.113	55	60.436	12.369	7	34.429	2.440	55	7	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--7	chr11:70269103	T	G	53	0.113	47	58.936	12.744	6	36.333	2.582	47	6	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--GL	chr11:70269103	T	NA	44	0	44	62.932	10.380	0	0	0	44	0	CTTN(NM_001184740:exon11:c.846+2T>G,NM_005231:exon12:c.957+2T>G,NM_138565:exon11:c.846+2T>G)	splicing	NA
RCC_T4--1	chr1:171491366	G	T	262	0.286	187	68.390	4.817	75	69.067	3.977	187	75	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:171491366	G	T	331	0.281	237	68.076	5.096	93	68.785	3.956	237	93	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:171491366	G	T	255	0.286	182	68.940	3.633	73	67.493	6.129	182	73	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:171491366	G	T	319	0.238	243	68.881	4.848	76	68.697	3.331	243	76	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:171491366	G	T	334	0.299	234	68.060	5.820	100	69.340	3.647	234	100	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:171491366	G	T	364	0.346	238	68.004	5.990	126	68.825	4.561	238	126	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:171491366	G	T	274	0.325	184	68.788	4.928	89	67.315	6.224	184	89	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:171491366	G	NA	279	0	279	68.208	6.263	0	0	0	279	0	PRRC2C	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:171492320	A	C	106	0.274	77	68.104	5.522	29	68.586	3.679	77	29	PRRC2C	intronic	NA
RCC_T4--2	chr1:171492320	A	C	121	0.231	93	67.645	6.167	28	68.464	4.282	93	28	PRRC2C	intronic	NA
RCC_T4--3	chr1:171492320	A	C	80	0.275	58	68.310	4.921	22	68.955	2.768	58	22	PRRC2C	intronic	NA
RCC_T4--4	chr1:171492320	A	C	108	0.241	82	68.207	5.557	26	67.346	7.605	82	26	PRRC2C	intronic	NA
RCC_T4--5	chr1:171492320	A	C	125	0.200	100	67.990	5.688	25	68.920	3.187	100	25	PRRC2C	intronic	NA
RCC_T4--6	chr1:171492320	A	C	134	0.022	131	68.527	3.409	3	66.667	3.215	131	3	PRRC2C	intronic	NA
RCC_T4--7	chr1:171492320	A	C	103	0.330	69	68.348	5.818	34	67.676	4.746	69	34	PRRC2C	intronic	NA
RCC_T4--GL	chr1:171492320	A	NA	112	0	112	68.196	5.254	0	0	0	112	0	PRRC2C	intronic	NA
RCC_T4--1	chr11:76918539	G	NA	50	0	50	67.280	5.789	0	0	0	50	0	MYO7A	intronic	NA
RCC_T4--2	chr11:76918539	G	T	34	0.118	30	66.967	5.980	4	64.500	7.141	30	4	MYO7A	intronic	NA
RCC_T4--3	chr11:76918539	G	NA	32	0	32	68.125	3.240	0	0	0	32	0	MYO7A	intronic	NA
RCC_T4--4	chr11:76918539	G	NA	22	0	22	69.545	2.824	0	0	0	22	0	MYO7A	intronic	NA
RCC_T4--5	chr11:76918539	G	NA	24	0	24	66.083	6.890	0	0	0	24	0	MYO7A	intronic	NA
RCC_T4--6	chr11:76918539	G	NA	41	0	41	67.512	3.515	0	0	0	41	0	MYO7A	intronic	NA
RCC_T4--7	chr11:76918539	G	NA	32	0	32	68.938	3.951	0	0	0	32	0	MYO7A	intronic	NA
RCC_T4--GL	chr11:76918539	G	NA	33	0	33	63.879	9.746	0	0	0	33	0	MYO7A	intronic	NA
RCC_T4--1	chr11:85342828	A	T	233	0.253	174	68.718	5.486	59	68.407	3.519	174	59	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--2	chr11:85342828	A	T	257	0.304	179	68.257	4.854	78	67.782	5.964	179	78	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--3	chr11:85342828	A	T	202	0.262	149	68.638	3.660	53	67.132	4.536	149	53	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--4	chr11:85342828	A	T	222	0.167	185	68.432	3.849	37	69.649	2.383	185	37	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--5	chr11:85342828	A	T	288	0.260	213	68.127	5.337	75	67.547	4.734	213	75	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--6	chr11:85342828	A	T	266	0.395	161	67.646	4.656	105	67.819	5.822	161	105	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--7	chr11:85342828	A	T	234	0.355	151	68.609	3.900	83	67.072	6.256	151	83	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--GL	chr11:85342828	A	NA	292	0	292	68.565	3.826	0	0	0	292	0	TMEM126B	exonic	nonsynonymous_SNV
RCC_T4--1	chr11:8671408	C	NA	111	0	110	67.618	5.389	0	0	0	110	0	TRIM66	exonic	synonymous_SNV
RCC_T4--2	chr11:8671408	C	NA	131	0	131	66.244	7.639	0	0	0	131	0	TRIM66	exonic	synonymous_SNV
RCC_T4--3	chr11:8671408	C	NA	94	0	93	67.656	5.533	0	0	0	93	0	TRIM66	exonic	synonymous_SNV
RCC_T4--4	chr11:8671408	C	NA	95	0	95	67.126	6.379	0	0	0	95	0	TRIM66	exonic	synonymous_SNV
RCC_T4--5	chr11:8671408	C	NA	127	0	127	66.811	6.247	0	0	0	127	0	TRIM66	exonic	synonymous_SNV
RCC_T4--6	chr11:8671408	C	NA	124	0	123	65.894	8.554	0	0	0	123	0	TRIM66	exonic	synonymous_SNV
RCC_T4--7	chr11:8671408	C	T	111	0.243	84	66.012	8.269	27	67.852	3.382	84	27	TRIM66	exonic	synonymous_SNV
RCC_T4--GL	chr11:8671408	C	NA	101	0	101	68.505	3.687	0	0	0	101	0	TRIM66	exonic	synonymous_SNV
RCC_T4--1	chr1:18703290	A	NA	38	0	38	67.447	3.916	0	0	0	38	0	IGSF21	intronic	NA
RCC_T4--2	chr1:18703290	A	NA	26	0	26	67.269	5.000	0	0	0	26	0	IGSF21	intronic	NA
RCC_T4--3	chr1:18703290	A	NA	30	0	30	67.033	4.131	0	0	0	30	0	IGSF21	intronic	NA
RCC_T4--4	chr1:18703290	A	NA	30	0	30	65.167	8.416	0	0	0	30	0	IGSF21	intronic	NA
RCC_T4--5	chr1:18703290	A	G	35	0.114	31	66.290	4.569	4	64.750	6.602	31	4	IGSF21	intronic	NA
RCC_T4--6	chr1:18703290	A	NA	41	0	41	66.366	5.200	0	0	0	41	0	IGSF21	intronic	NA
RCC_T4--7	chr1:18703290	A	NA	29	0	29	66.931	3.463	0	0	0	29	0	IGSF21	intronic	NA
RCC_T4--GL	chr1:18703290	A	NA	39	0	39	65.923	3.793	0	0	0	39	0	IGSF21	intronic	NA
RCC_T4--1	chr1:19412655	C	A	38	0.158	32	68.719	3.621	6	63.667	7.554	32	6	UBR4	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:19412655	C	NA	32	0	32	66.938	3.654	0	0	0	32	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:19412655	C	NA	16	0	16	64.812	7.799	0	0	0	16	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:19412655	C	NA	33	0	33	66.848	4.764	0	0	0	33	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:19412655	C	NA	24	0	24	65.417	9.036	0	0	0	24	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:19412655	C	NA	39	0	39	68.333	3.474	0	0	0	39	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:19412655	C	NA	31	0	31	68.387	3.222	0	0	0	31	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:19412655	C	NA	42	0	42	65.262	6.768	0	0	0	42	0	UBR4	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:19553750	C	T	67	0.134	58	67.776	4.852	9	70.333	1.323	58	9	EMC1	intronic	NA
RCC_T4--2	chr1:19553750	C	T	47	0.213	37	65.946	6.749	10	67.400	5.232	37	10	EMC1	intronic	NA
RCC_T4--3	chr1:19553750	C	T	52	0.269	38	67.658	3.693	14	67.714	2.367	38	14	EMC1	intronic	NA
RCC_T4--4	chr1:19553750	C	T	65	0.323	44	69.000	2.711	21	68.810	3.203	44	21	EMC1	intronic	NA
RCC_T4--5	chr1:19553750	C	T	56	0.357	36	66.667	7.171	20	69.150	2.455	36	20	EMC1	intronic	NA
RCC_T4--6	chr1:19553750	C	T	50	0.020	49	67.531	3.606	1	71.000	0.000	49	1	EMC1	intronic	NA
RCC_T4--7	chr1:19553750	C	T	50	0.300	35	69.000	2.555	15	69.000	2.563	35	15	EMC1	intronic	NA
RCC_T4--GL	chr1:19553750	C	NA	46	0	46	67.935	5.061	0	0	0	46	0	EMC1	intronic	NA
RCC_T4--1	chr1:200945899	G	NA	41	0	41	64.805	6.787	0	0	0	41	0	KIF21B	intronic	NA
RCC_T4--2	chr1:200945899	G	NA	45	0	45	66.489	4.888	0	0	0	45	0	KIF21B	intronic	NA
RCC_T4--3	chr1:200945899	G	T	24	0.167	20	63.400	7.401	4	67.500	2.380	20	4	KIF21B	intronic	NA
RCC_T4--4	chr1:200945899	G	NA	24	0	24	66.125	2.997	0	0	0	24	0	KIF21B	intronic	NA
RCC_T4--5	chr1:200945899	G	NA	36	0	36	64.306	7.540	0	0	0	36	0	KIF21B	intronic	NA
RCC_T4--6	chr1:200945899	G	NA	41	0	41	65.561	7.507	0	0	0	41	0	KIF21B	intronic	NA
RCC_T4--7	chr1:200945899	G	NA	31	0	31	65.516	7.869	0	0	0	31	0	KIF21B	intronic	NA
RCC_T4--GL	chr1:200945899	G	NA	34	0	34	63.412	9.851	0	0	0	34	0	KIF21B	intronic	NA
RCC_T4--1	chr1:201330601	A	C	42	0.024	40	54.350	9.515	1	33.000	0.000	40	1	TNNT2	intronic	NA
RCC_T4--2	chr1:201330601	A	C	55	0.055	52	52.192	10.181	3	37.000	1.732	52	3	TNNT2	intronic	NA
RCC_T4--3	chr1:201330601	A	C	33	0.212	25	55.480	8.977	7	42.857	11.379	25	7	TNNT2	intronic	NA
RCC_T4--4	chr1:201330601	A	C	40	0.025	38	56.711	9.031	1	36.000	0.000	38	1	TNNT2	intronic	NA
RCC_T4--5	chr1:201330601	A	C	40	0.025	39	54.615	10.031	1	36.000	0.000	39	1	TNNT2	intronic	NA
RCC_T4--6	chr1:201330601	A	C	31	0.032	29	51.172	9.358	1	39.000	0.000	29	1	TNNT2	intronic	NA
RCC_T4--7	chr1:201330601	A	C	34	0.029	33	55.576	8.965	1	38.000	0.000	33	1	TNNT2	intronic	NA
RCC_T4--GL	chr1:201330601	A	NA	35	0	35	54.686	7.760	0	0	0	35	0	TNNT2	intronic	NA
RCC_T4--1	chr1:204086189	G	NA	58	0	58	66.776	4.031	0	0	0	58	0	SOX13	intronic	NA
RCC_T4--2	chr1:204086189	G	NA	38	0	38	66.053	5.900	0	0	0	38	0	SOX13	intronic	NA
RCC_T4--3	chr1:204086189	G	NA	38	0	38	65.395	8.481	0	0	0	38	0	SOX13	intronic	NA
RCC_T4--4	chr1:204086189	G	NA	45	0	45	67.200	4.717	0	0	0	45	0	SOX13	intronic	NA
RCC_T4--5	chr1:204086189	G	NA	45	0	45	62.911	10.892	0	0	0	45	0	SOX13	intronic	NA
RCC_T4--6	chr1:204086189	G	NA	48	0	48	66.812	7.073	0	0	0	48	0	SOX13	intronic	NA
RCC_T4--7	chr1:204086189	G	A	31	0.129	27	65.852	10.321	4	67.500	4.796	27	4	SOX13	intronic	NA
RCC_T4--GL	chr1:204086189	G	NA	49	0	49	66.000	8.057	0	0	0	49	0	SOX13	intronic	NA
RCC_T4--1	chr1:204970285	A	C	49	0.041	47	61.489	12.056	2	35.000	2.828	47	2	NFASC	intronic	NA
RCC_T4--2	chr1:204970285	A	C	47	0.170	39	62.744	10.442	8	36.750	3.732	39	8	NFASC	intronic	NA
RCC_T4--3	chr1:204970285	A	C	37	0.027	36	63.333	9.842	1	37.000	0.000	36	1	NFASC	intronic	NA
RCC_T4--4	chr1:204970285	A	NA	44	0	44	65.023	9.257	0	0	0	44	0	NFASC	intronic	NA
RCC_T4--5	chr1:204970285	A	C	53	0.075	49	64.571	11.427	4	39.000	5.477	49	4	NFASC	intronic	NA
RCC_T4--6	chr1:204970285	A	C	57	0.018	56	61.214	12.222	1	37.000	0.000	56	1	NFASC	intronic	NA
RCC_T4--7	chr1:204970285	A	C	34	0.088	31	59.613	13.654	3	34.000	1.732	31	3	NFASC	intronic	NA
RCC_T4--GL	chr1:204970285	A	NA	42	0	42	62.500	11.631	0	0	0	42	0	NFASC	intronic	NA
RCC_T4--1	chr1:208390173	C	NA	60	0	60	66.150	8.334	0	0	0	60	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--2	chr1:208390173	C	T	35	0.114	31	62.903	11.522	4	66.250	2.986	31	4	PLXNA2	exonic	synonymous_SNV
RCC_T4--3	chr1:208390173	C	NA	40	0	40	66.350	7.004	0	0	0	40	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--4	chr1:208390173	C	NA	43	0	43	67.116	3.705	0	0	0	43	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--5	chr1:208390173	C	NA	45	0	45	66.356	6.322	0	0	0	45	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--6	chr1:208390173	C	NA	50	0	50	65.580	7.211	0	0	0	50	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--7	chr1:208390173	C	NA	59	0	59	66.661	6.519	0	0	0	59	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--GL	chr1:208390173	C	NA	35	0	35	67.714	5.267	0	0	0	35	0	PLXNA2	exonic	synonymous_SNV
RCC_T4--1	chr12:123466637	C	NA	31	0	31	65.226	5.714	0	0	0	31	0	ARL6IP4	intronic	NA
RCC_T4--2	chr12:123466637	C	NA	35	0	35	63.457	8.329	0	0	0	35	0	ARL6IP4	intronic	NA
RCC_T4--3	chr12:123466637	C	T	31	0.129	27	66.926	2.881	4	63.250	2.630	27	4	ARL6IP4	intronic	NA
RCC_T4--4	chr12:123466637	C	NA	41	0	41	66.073	4.813	0	0	0	41	0	ARL6IP4	intronic	NA
RCC_T4--5	chr12:123466637	C	NA	31	0	31	63.774	8.644	0	0	0	31	0	ARL6IP4	intronic	NA
RCC_T4--6	chr12:123466637	C	T	30	0.033	29	63.655	8.436	1	60.000	0.000	29	1	ARL6IP4	intronic	NA
RCC_T4--7	chr12:123466637	C	NA	45	0	45	64.200	6.764	0	0	0	45	0	ARL6IP4	intronic	NA
RCC_T4--GL	chr12:123466637	C	NA	33	0	33	67.333	3.830	0	0	0	33	0	ARL6IP4	intronic	NA
RCC_T4--1	chr12:125455897	G	NA	35	0	35	67.229	3.370	0	0	0	35	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--2	chr12:125455897	G	NA	38	0	38	62.158	9.691	0	0	0	38	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--3	chr12:125455897	G	NA	31	0	31	62.000	9.515	0	0	0	31	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--4	chr12:125455897	G	A	42	0.119	36	64.472	6.864	5	52.000	15.313	36	5	DHX37	exonic	nonsynonymous_SNV
RCC_T4--5	chr12:125455897	G	NA	36	0	36	65.861	6.732	0	0	0	36	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--6	chr12:125455897	G	NA	22	0	22	64.909	7.628	0	0	0	22	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--7	chr12:125455897	G	NA	28	0	28	65.536	7.667	0	0	0	28	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--GL	chr12:125455897	G	NA	33	0	33	64.606	7.058	0	0	0	33	0	DHX37	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:21551817	C	NA	41	0	41	65.317	6.806	0	0	0	41	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:21551817	C	NA	33	0	33	65.485	9.230	0	0	0	33	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:21551817	C	NA	42	0	42	64.119	6.950	0	0	0	42	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:21551817	C	NA	54	0	54	65.093	6.441	0	0	0	54	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:21551817	C	NA	44	0	44	65.045	8.138	0	0	0	44	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:21551817	C	T	45	0.133	39	66.769	4.562	6	62.167	5.492	39	6	ECE1	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:21551817	C	NA	42	0	42	66.548	5.185	0	0	0	42	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:21551817	C	NA	42	0	42	65.357	6.796	0	0	0	42	0	ECE1	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:21564568	T	G	31	0.065	29	57.483	10.158	2	35.000	2.828	29	2	ECE1	intronic	NA
RCC_T4--2	chr1:21564568	T	G	27	0.037	25	56.600	10.540	1	37.000	0.000	25	1	ECE1	intronic	NA
RCC_T4--3	chr1:21564568	T	G	17	0.059	16	52.375	12.505	1	57.000	0.000	16	1	ECE1	intronic	NA
RCC_T4--4	chr1:21564568	T	G	35	0.057	33	55.576	10.923	2	42.000	7.071	33	2	ECE1	intronic	NA
RCC_T4--5	chr1:21564568	T	G	29	0.276	21	58.143	9.499	8	39.125	6.424	21	8	ECE1	intronic	NA
RCC_T4--6	chr1:21564568	T	G	23	0.130	20	55.450	11.166	3	37.333	7.506	20	3	ECE1	intronic	NA
RCC_T4--7	chr1:21564568	T	G	24	0.042	23	57.391	11.773	1	33.000	0.000	23	1	ECE1	intronic	NA
RCC_T4--GL	chr1:21564568	T	NA	36	0	35	56.600	10.744	0	0	0	35	0	ECE1	intronic	NA
RCC_T4--1	chr12:20905508	G	NA	54	0	54	68.204	6.514	0	0	0	54	0	SLCO1C1	UTR3	NA
RCC_T4--2	chr12:20905508	G	A	50	0.120	44	68.273	4.083	6	59.833	9.847	44	6	SLCO1C1	UTR3	NA
RCC_T4--3	chr12:20905508	G	NA	62	0	62	67.968	5.892	0	0	0	62	0	SLCO1C1	UTR3	NA
RCC_T4--4	chr12:20905508	G	NA	50	0	50	66.740	6.124	0	0	0	50	0	SLCO1C1	UTR3	NA
RCC_T4--5	chr12:20905508	G	NA	67	0	67	69.030	2.887	0	0	0	67	0	SLCO1C1	UTR3	NA
RCC_T4--6	chr12:20905508	G	NA	59	0	59	67.356	5.644	0	0	0	59	0	SLCO1C1	UTR3	NA
RCC_T4--7	chr12:20905508	G	NA	68	0	68	68.882	4.827	0	0	0	68	0	SLCO1C1	UTR3	NA
RCC_T4--GL	chr12:20905508	G	NA	53	0	53	69.792	3.845	0	0	0	53	0	SLCO1C1	UTR3	NA
RCC_T4--1	chr1:226924415	G	NA	110	0	108	63.269	8.465	0	0	0	108	0	ITPKB	exonic	stopgain_SNV
RCC_T4--2	chr1:226924415	G	NA	107	0	107	62.215	10.913	0	0	0	107	0	ITPKB	exonic	stopgain_SNV
RCC_T4--3	chr1:226924415	G	A	85	0.247	64	61.078	10.504	21	63.095	7.589	64	21	ITPKB	exonic	stopgain_SNV
RCC_T4--4	chr1:226924415	G	NA	106	0	106	64.311	8.867	0	0	0	106	0	ITPKB	exonic	stopgain_SNV
RCC_T4--5	chr1:226924415	G	NA	116	0	115	62.504	10.978	0	0	0	115	0	ITPKB	exonic	stopgain_SNV
RCC_T4--6	chr1:226924415	G	NA	101	0	100	61.560	12.290	0	0	0	100	0	ITPKB	exonic	stopgain_SNV
RCC_T4--7	chr1:226924415	G	NA	68	0	67	60.284	11.968	0	0	0	67	0	ITPKB	exonic	stopgain_SNV
RCC_T4--GL	chr1:226924415	G	NA	71	0	71	63.620	10.254	0	0	0	71	0	ITPKB	exonic	stopgain_SNV
RCC_T4--1	chr1:228505330	T	G	38	0.079	35	58.143	10.841	3	34.667	2.887	35	3	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:228505330	T	G	41	0.024	40	57.875	12.550	1	33.000	0.000	40	1	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:228505330	T	G	19	0.368	12	51.417	15.762	7	36.571	2.440	12	7	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:228505330	T	G	36	0.083	33	60.091	11.775	3	34.667	2.887	33	3	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:228505330	T	G	45	0.067	41	60.122	11.769	3	39.000	1.732	41	3	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:228505330	T	G	46	0.087	42	54.952	11.741	4	34.250	2.500	42	4	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:228505330	T	G	36	0.111	32	56.281	11.963	4	36.750	2.500	32	4	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:228505330	T	NA	37	0	37	57.027	11.611	0	0	0	37	0	OBSCN	exonic	nonsynonymous_SNV
RCC_T4--1	chr12:29639352	G	NA	118	0	118	68.627	4.260	0	0	0	118	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--2	chr12:29639352	G	NA	108	0	108	68.398	5.208	0	0	0	108	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--3	chr12:29639352	G	C	112	0.009	110	68.782	5.427	1	71.000	0.000	110	1	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--4	chr12:29639352	G	NA	93	0	93	68.484	4.505	0	0	0	93	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--5	chr12:29639352	G	NA	118	0	118	68.424	5.498	0	0	0	118	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--6	chr12:29639352	G	C	105	0.219	82	68.415	5.219	23	69.826	2.887	82	23	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--7	chr12:29639352	G	NA	125	0	125	68.872	4.225	0	0	0	125	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--GL	chr12:29639352	G	NA	117	0	117	68.632	5.197	0	0	0	117	0	OVCH1-AS1	ncRNA_intronic	NA
RCC_T4--1	chr12:33138794	G	NA	25	0	25	66.560	6.070	0	0	0	25	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--2	chr12:33138794	G	NA	22	0	22	66.136	4.443	0	0	0	22	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--3	chr12:33138794	G	NA	10	0	10	66.900	3.107	0	0	0	10	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--4	chr12:33138794	G	NA	19	0	19	66.368	5.013	0	0	0	19	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--5	chr12:33138794	G	T	33	0.121	29	66.276	7.280	4	65.750	0.957	29	4	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--6	chr12:33138794	G	NA	21	0	21	66.810	4.718	0	0	0	21	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--7	chr12:33138794	G	NA	18	0	18	64.333	7.829	0	0	0	18	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--GL	chr12:33138794	G	NA	35	0	35	66.943	3.421	0	0	0	35	0	PKP2(dist=89014),SYT10(dist=389554)	intergenic	NA
RCC_T4--1	chr12:34176779	T	NA	65	0	65	67.831	4.765	0	0	0	65	0	ALG10	intronic	NA
RCC_T4--2	chr12:34176779	T	NA	55	0	55	66.891	6.300	0	0	0	55	0	ALG10	intronic	NA
RCC_T4--3	chr12:34176779	T	NA	59	0	58	67.741	5.593	0	0	0	58	0	ALG10	intronic	NA
RCC_T4--4	chr12:34176779	T	C	62	0.145	53	67.208	6.150	9	69.222	4.738	53	9	ALG10	intronic	NA
RCC_T4--5	chr12:34176779	T	NA	74	0	74	69.162	3.515	0	0	0	74	0	ALG10	intronic	NA
RCC_T4--6	chr12:34176779	T	NA	79	0	79	67.975	5.437	0	0	0	79	0	ALG10	intronic	NA
RCC_T4--7	chr12:34176779	T	NA	68	0	68	67.632	4.785	0	0	0	68	0	ALG10	intronic	NA
RCC_T4--GL	chr12:34176779	T	NA	78	0	78	67.949	5.835	0	0	0	78	0	ALG10	intronic	NA
RCC_T4--1	chr1:241901582	C	NA	120	0	120	68.767	6.233	0	0	0	120	0	WDR64	intronic	NA
RCC_T4--2	chr1:241901582	C	NA	119	0	119	69.387	4.115	0	0	0	119	0	WDR64	intronic	NA
RCC_T4--3	chr1:241901582	C	NA	103	0	103	68.563	4.565	0	0	0	103	0	WDR64	intronic	NA
RCC_T4--4	chr1:241901582	C	NA	118	0	118	69.008	4.502	0	0	0	118	0	WDR64	intronic	NA
RCC_T4--5	chr1:241901582	C	NA	113	0	113	69.646	2.985	0	0	0	113	0	WDR64	intronic	NA
RCC_T4--6	chr1:241901582	C	G	141	0.447	78	68.756	6.479	63	68.556	3.983	78	63	WDR64	intronic	NA
RCC_T4--7	chr1:241901582	C	NA	125	0	125	69.000	3.748	0	0	0	125	0	WDR64	intronic	NA
RCC_T4--GL	chr1:241901582	C	NA	139	0	139	69.417	3.565	0	0	0	139	0	WDR64	intronic	NA
RCC_T4--1	chr1:246942132	C	NA	41	0	41	64.463	8.967	0	0	0	41	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--2	chr1:246942132	C	NA	38	0	38	61.474	10.825	0	0	0	38	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--3	chr1:246942132	C	NA	50	0	50	63.580	10.649	0	0	0	50	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--4	chr1:246942132	C	NA	40	0	40	65.000	7.545	0	0	0	40	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--5	chr1:246942132	C	A	36	0.167	30	65.533	5.419	6	53.000	12.665	30	6	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--6	chr1:246942132	C	NA	34	0	34	65.029	7.818	0	0	0	34	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--7	chr1:246942132	C	NA	49	0	49	62.388	11.024	0	0	0	49	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--GL	chr1:246942132	C	NA	35	0	35	63.943	10.146	0	0	0	35	0	SCCPDH(dist=10692),LOC149134(dist=10787)	intergenic	NA
RCC_T4--1	chr1:24782922	A	C	41	0.024	39	56.282	11.288	1	33.000	0.000	39	1	NIPAL3	intronic	NA
RCC_T4--2	chr1:24782922	A	C	40	0.075	37	55.919	11.490	3	35.667	2.309	37	3	NIPAL3	intronic	NA
RCC_T4--3	chr1:24782922	A	C	13	0.154	11	59.455	10.718	2	39.000	0.000	11	2	NIPAL3	intronic	NA
RCC_T4--4	chr1:24782922	A	C	22	0.273	15	56.000	8.264	6	40.667	5.125	15	6	NIPAL3	intronic	NA
RCC_T4--5	chr1:24782922	A	C	16	0.062	15	57.333	10.913	1	47.000	0.000	15	1	NIPAL3	intronic	NA
RCC_T4--6	chr1:24782922	A	C	29	0.103	24	57.292	9.516	3	34.333	2.309	24	3	NIPAL3	intronic	NA
RCC_T4--7	chr1:24782922	A	C	25	0.080	23	57.261	12.080	2	39.000	8.485	23	2	NIPAL3	intronic	NA
RCC_T4--GL	chr1:24782922	A	NA	33	0	33	60.424	8.555	0	0	0	33	0	NIPAL3	intronic	NA
RCC_T4--1	chr12:48180354	T	NA	32	0	32	66.625	4.233	0	0	0	32	0	HDAC7	intronic	NA
RCC_T4--2	chr12:48180354	T	NA	25	0	25	63.840	8.854	0	0	0	25	0	HDAC7	intronic	NA
RCC_T4--3	chr12:48180354	T	NA	40	0	40	63.125	8.392	0	0	0	40	0	HDAC7	intronic	NA
RCC_T4--4	chr12:48180354	T	NA	39	0	39	65.410	7.089	0	0	0	39	0	HDAC7	intronic	NA
RCC_T4--5	chr12:48180354	T	C	38	0.158	32	64.906	8.030	6	68.000	2.191	32	6	HDAC7	intronic	NA
RCC_T4--6	chr12:48180354	T	C	44	0.023	43	65.860	7.153	1	33.000	0.000	43	1	HDAC7	intronic	NA
RCC_T4--7	chr12:48180354	T	NA	42	0	42	64.524	10.081	0	0	0	42	0	HDAC7	intronic	NA
RCC_T4--GL	chr12:48180354	T	NA	33	0	33	64.697	9.098	0	0	0	33	0	HDAC7	intronic	NA
RCC_T4--1	chr12:48533725	T	NA	37	0	37	66.459	8.235	0	0	0	37	0	PFKM	intronic	NA
RCC_T4--2	chr12:48533725	T	C	76	0.013	75	65.307	7.077	1	62.000	0.000	75	1	PFKM	intronic	NA
RCC_T4--3	chr12:48533725	T	C	36	0.111	32	66.125	4.950	4	65.250	2.986	32	4	PFKM	intronic	NA
RCC_T4--4	chr12:48533725	T	NA	60	0	60	66.550	5.927	0	0	0	60	0	PFKM	intronic	NA
RCC_T4--5	chr12:48533725	T	NA	49	0	49	66.857	5.668	0	0	0	49	0	PFKM	intronic	NA
RCC_T4--6	chr12:48533725	T	NA	53	0	53	66.170	7.218	0	0	0	53	0	PFKM	intronic	NA
RCC_T4--7	chr12:48533725	T	NA	38	0	38	67.921	4.063	0	0	0	38	0	PFKM	intronic	NA
RCC_T4--GL	chr12:48533725	T	NA	53	0	53	63.962	7.857	0	0	0	53	0	PFKM	intronic	NA
RCC_T4--1	chr12:58068853	C	NA	49	0	49	66.714	5.976	0	0	0	49	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--2	chr12:58068853	C	NA	60	0	60	66.883	5.126	0	0	0	60	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--3	chr12:58068853	C	NA	46	0	45	65.511	4.440	0	0	0	45	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--4	chr12:58068853	C	NA	55	0	55	65.036	8.411	0	0	0	55	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--5	chr12:58068853	C	A	50	0.120	44	66.727	6.606	6	63.333	6.408	44	6	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--6	chr12:58068853	C	NA	56	0	56	65.589	9.345	0	0	0	56	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--7	chr12:58068853	C	NA	45	0	45	66.511	6.309	0	0	0	45	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--GL	chr12:58068853	C	NA	48	0	48	66.792	5.929	0	0	0	48	0	B4GALNT1(dist=41831),OS9(dist=18885)	intergenic	NA
RCC_T4--1	chr12:59284090	G	NA	41	0	41	69.024	5.087	0	0	0	41	0	LRIG3	intronic	NA
RCC_T4--2	chr12:59284090	G	NA	46	0	46	66.609	8.818	0	0	0	46	0	LRIG3	intronic	NA
RCC_T4--3	chr12:59284090	G	T	37	0.135	32	68.312	2.901	5	63.400	17.038	32	5	LRIG3	intronic	NA
RCC_T4--4	chr12:59284090	G	NA	40	0	39	68.846	3.703	0	0	0	39	0	LRIG3	intronic	NA
RCC_T4--5	chr12:59284090	G	NA	38	0	38	68.500	3.868	0	0	0	38	0	LRIG3	intronic	NA
RCC_T4--6	chr12:59284090	G	NA	37	0	37	69.162	2.901	0	0	0	37	0	LRIG3	intronic	NA
RCC_T4--7	chr12:59284090	G	NA	35	0	35	69.486	3.203	0	0	0	35	0	LRIG3	intronic	NA
RCC_T4--GL	chr12:59284090	G	NA	37	0	37	67.730	6.122	0	0	0	37	0	LRIG3	intronic	NA
RCC_T4--1	chr1:26309006	C	NA	45	0	45	63.511	9.472	0	0	0	45	0	PAFAH2	intronic	NA
RCC_T4--2	chr1:26309006	C	NA	39	0	39	65.154	8.257	0	0	0	39	0	PAFAH2	intronic	NA
RCC_T4--3	chr1:26309006	C	NA	21	0	21	66.952	6.062	0	0	0	21	0	PAFAH2	intronic	NA
RCC_T4--4	chr1:26309006	C	NA	33	0	33	66.303	3.566	0	0	0	33	0	PAFAH2	intronic	NA
RCC_T4--5	chr1:26309006	C	NA	59	0	59	65.542	6.747	0	0	0	59	0	PAFAH2	intronic	NA
RCC_T4--6	chr1:26309006	C	NA	60	0	60	64.733	7.394	0	0	0	60	0	PAFAH2	intronic	NA
RCC_T4--7	chr1:26309006	C	A	26	0.154	22	65.818	4.636	4	67.000	3.830	22	4	PAFAH2	intronic	NA
RCC_T4--GL	chr1:26309006	C	NA	37	0	37	66.757	6.016	0	0	0	37	0	PAFAH2	intronic	NA
RCC_T4--1	chr12:6442672	C	A	42	0.143	36	67.111	8.211	6	64.167	2.317	36	6	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--2	chr12:6442672	C	NA	47	0	47	66.511	6.043	0	0	0	47	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--3	chr12:6442672	C	NA	49	0	49	66.286	6.305	0	0	0	49	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--4	chr12:6442672	C	NA	37	0	37	68.162	3.500	0	0	0	37	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--5	chr12:6442672	C	NA	35	0	35	68.286	3.348	0	0	0	35	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--6	chr12:6442672	C	NA	44	0	44	66.341	6.430	0	0	0	44	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--7	chr12:6442672	C	NA	42	0	42	66.000	4.173	0	0	0	42	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--GL	chr12:6442672	C	NA	40	0	40	68.125	3.180	0	0	0	40	0	TNFRSF1A	exonic	nonsynonymous_SNV
RCC_T4--1	chr12:6495548	G	NA	41	0	41	65.634	6.163	0	0	0	41	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--2	chr12:6495548	G	NA	62	0	62	63.790	7.742	0	0	0	62	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--3	chr12:6495548	G	A	39	0.128	34	63.412	9.906	5	60.600	8.444	34	5	LTBR	exonic	nonsynonymous_SNV
RCC_T4--4	chr12:6495548	G	NA	48	0	48	65.146	6.415	0	0	0	48	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--5	chr12:6495548	G	NA	55	0	55	65.564	6.713	0	0	0	55	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--6	chr12:6495548	G	NA	36	0	36	65.611	5.929	0	0	0	36	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--7	chr12:6495548	G	NA	36	0	35	63.657	8.828	0	0	0	35	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--GL	chr12:6495548	G	NA	48	0	48	67.438	3.903	0	0	0	48	0	LTBR	exonic	nonsynonymous_SNV
RCC_T4--1	chr12:68618859	A	G	98	0.388	59	68.373	2.864	38	69.553	3.108	59	38	IL26	intronic	NA
RCC_T4--2	chr12:68618859	A	G	95	0.232	73	68.808	4.242	22	68.818	3.838	73	22	IL26	intronic	NA
RCC_T4--3	chr12:68618859	A	G	96	0.292	68	67.985	3.576	28	68.071	3.600	68	28	IL26	intronic	NA
RCC_T4--4	chr12:68618859	A	G	91	0.198	73	68.068	3.878	18	67.444	3.166	73	18	IL26	intronic	NA
RCC_T4--5	chr12:68618859	A	G	107	0.252	80	68.325	5.632	27	67.852	4.452	80	27	IL26	intronic	NA
RCC_T4--6	chr12:68618859	A	G	110	0.336	73	67.959	5.108	37	66.757	6.529	73	37	IL26	intronic	NA
RCC_T4--7	chr12:68618859	A	G	113	0.265	83	68.133	5.488	30	66.400	4.868	83	30	IL26	intronic	NA
RCC_T4--GL	chr12:68618859	A	NA	137	0	136	68.235	5.374	0	0	0	136	0	IL26	intronic	NA
RCC_T4--1	chr12:72013024	A	NA	45	0	45	69.889	2.724	0	0	0	45	0	ZFC3H1	intronic	NA
RCC_T4--2	chr12:72013024	A	C	64	0.172	53	68.679	6.041	11	68.909	4.657	53	11	ZFC3H1	intronic	NA
RCC_T4--3	chr12:72013024	A	NA	44	0	44	68.977	3.188	0	0	0	44	0	ZFC3H1	intronic	NA
RCC_T4--4	chr12:72013024	A	NA	42	0	42	69.048	2.871	0	0	0	42	0	ZFC3H1	intronic	NA
RCC_T4--5	chr12:72013024	A	NA	61	0	61	69.885	2.671	0	0	0	61	0	ZFC3H1	intronic	NA
RCC_T4--6	chr12:72013024	A	NA	65	0	65	69.723	2.577	0	0	0	65	0	ZFC3H1	intronic	NA
RCC_T4--7	chr12:72013024	A	NA	56	0	56	68.821	4.269	0	0	0	56	0	ZFC3H1	intronic	NA
RCC_T4--GL	chr12:72013024	A	NA	47	0	47	69.234	3.490	0	0	0	47	0	ZFC3H1	intronic	NA
RCC_T4--1	chr12:7277307	T	C	157	0.287	112	66.348	6.212	45	65.467	8.284	112	45	RBP5	exonic	nonsynonymous_SNV
RCC_T4--2	chr12:7277307	T	C	164	0.232	125	64.592	7.808	38	66.026	6.553	125	38	RBP5	exonic	nonsynonymous_SNV
RCC_T4--3	chr12:7277307	T	C	181	0.254	134	66.000	5.728	46	65.457	6.934	134	46	RBP5	exonic	nonsynonymous_SNV
RCC_T4--4	chr12:7277307	T	C	146	0.164	122	65.393	7.207	24	67.583	5.956	122	24	RBP5	exonic	nonsynonymous_SNV
RCC_T4--5	chr12:7277307	T	C	152	0.224	118	66.161	6.146	34	65.882	7.343	118	34	RBP5	exonic	nonsynonymous_SNV
RCC_T4--6	chr12:7277307	T	C	195	0.426	110	66.164	5.465	83	66.482	6.931	110	83	RBP5	exonic	nonsynonymous_SNV
RCC_T4--7	chr12:7277307	T	C	144	0.250	108	66.481	4.856	36	66.028	7.474	108	36	RBP5	exonic	nonsynonymous_SNV
RCC_T4--GL	chr12:7277307	T	NA	142	0	141	65.170	7.136	0	0	0	141	0	RBP5	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:27681945	G	NA	58	0	58	66.345	6.074	0	0	0	58	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--2	chr1:27681945	G	A	58	0.155	49	67.020	6.206	9	58.667	10.428	49	9	MAP3K6	exonic	synonymous_SNV
RCC_T4--3	chr1:27681945	G	NA	44	0	43	65.116	8.517	0	0	0	43	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--4	chr1:27681945	G	NA	42	0	42	66.333	5.372	0	0	0	42	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--5	chr1:27681945	G	NA	53	0	53	66.981	4.470	0	0	0	53	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--6	chr1:27681945	G	NA	29	0	29	65.586	9.272	0	0	0	29	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--7	chr1:27681945	G	NA	59	0	59	66.915	5.073	0	0	0	59	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--GL	chr1:27681945	G	NA	51	0	51	64.667	7.047	0	0	0	51	0	MAP3K6	exonic	synonymous_SNV
RCC_T4--1	chr12:88586277	G	A	45	0.067	42	68.524	2.530	3	66.333	1.528	42	3	TMTC3	intronic	NA
RCC_T4--2	chr12:88586277	G	A	33	0.152	28	69.143	4.704	5	66.000	1.871	28	5	TMTC3	intronic	NA
RCC_T4--3	chr12:88586277	G	A	29	0.069	27	67.074	4.739	2	59.000	8.485	27	2	TMTC3	intronic	NA
RCC_T4--4	chr12:88586277	G	A	25	0.080	23	67.261	4.158	2	66.000	1.414	23	2	TMTC3	intronic	NA
RCC_T4--5	chr12:88586277	G	A	59	0.017	57	68.421	6.109	1	61.000	0.000	57	1	TMTC3	intronic	NA
RCC_T4--6	chr12:88586277	G	A	45	0.022	44	66.750	7.619	1	68.000	0.000	44	1	TMTC3	intronic	NA
RCC_T4--7	chr12:88586277	G	A	35	0.057	33	69.242	3.307	2	67.000	1.414	33	2	TMTC3	intronic	NA
RCC_T4--GL	chr12:88586277	G	NA	48	0	48	68.729	3.356	0	0	0	48	0	TMTC3	intronic	NA
RCC_T4--1	chr12:95867977	G	A	73	0.192	59	59.339	11.406	14	60.714	9.051	59	14	METAP2	exonic	nonsynonymous_SNV
RCC_T4--2	chr12:95867977	G	A	71	0.324	48	59.104	9.883	23	61.696	10.070	48	23	METAP2	exonic	nonsynonymous_SNV
RCC_T4--3	chr12:95867977	G	A	73	0.288	51	53.667	13.404	21	63.190	8.201	51	21	METAP2	exonic	nonsynonymous_SNV
RCC_T4--4	chr12:95867977	G	A	50	0.120	44	55.295	12.482	6	62.500	14.598	44	6	METAP2	exonic	nonsynonymous_SNV
RCC_T4--5	chr12:95867977	G	A	76	0.342	50	58.140	10.573	26	59.115	9.136	50	26	METAP2	exonic	nonsynonymous_SNV
RCC_T4--6	chr12:95867977	G	A	66	0.364	42	56.595	12.672	24	59.292	11.059	42	24	METAP2	exonic	nonsynonymous_SNV
RCC_T4--7	chr12:95867977	G	A	65	0.277	46	54.239	11.995	18	57.389	10.842	46	18	METAP2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr12:95867977	G	NA	77	0	77	59.273	10.022	0	0	0	77	0	METAP2	exonic	nonsynonymous_SNV
RCC_T4--1	chr13:113508710	C	T	69	0.188	56	62.518	9.147	13	67.769	2.455	56	13	ATP11A	exonic	synonymous_SNV
RCC_T4--2	chr13:113508710	C	T	58	0.310	40	66.200	4.547	18	68.389	4.060	40	18	ATP11A	exonic	synonymous_SNV
RCC_T4--3	chr13:113508710	C	T	50	0.320	34	64.941	9.319	16	69.062	2.462	34	16	ATP11A	exonic	synonymous_SNV
RCC_T4--4	chr13:113508710	C	T	69	0.304	48	64.729	7.775	21	65.524	5.354	48	21	ATP11A	exonic	synonymous_SNV
RCC_T4--5	chr13:113508710	C	T	64	0.297	45	65.111	7.123	19	66.947	4.156	45	19	ATP11A	exonic	synonymous_SNV
RCC_T4--6	chr13:113508710	C	T	57	0.263	42	65.595	8.721	15	66.533	9.731	42	15	ATP11A	exonic	synonymous_SNV
RCC_T4--7	chr13:113508710	C	T	57	0.316	39	67.231	4.107	18	66.222	4.292	39	18	ATP11A	exonic	synonymous_SNV
RCC_T4--GL	chr13:113508710	C	NA	41	0	41	61.780	10.880	0	0	0	41	0	ATP11A	exonic	synonymous_SNV
RCC_T4--1	chr13:114535756	G	NA	49	0	49	64.204	9.133	0	0	0	49	0	GAS6	ncRNA_UTR5	NA
RCC_T4--2	chr13:114535756	G	NA	29	0	29	65.897	5.314	0	0	0	29	0	GAS6	ncRNA_UTR5	NA
RCC_T4--3	chr13:114535756	G	NA	26	0	26	64.885	9.522	0	0	0	26	0	GAS6	ncRNA_UTR5	NA
RCC_T4--4	chr13:114535756	G	NA	28	0	28	66.679	3.722	0	0	0	28	0	GAS6	ncRNA_UTR5	NA
RCC_T4--5	chr13:114535756	G	NA	46	0	46	66.043	7.851	0	0	0	46	0	GAS6	ncRNA_UTR5	NA
RCC_T4--6	chr13:114535756	G	NA	63	0	63	63.794	8.493	0	0	0	63	0	GAS6	ncRNA_UTR5	NA
RCC_T4--7	chr13:114535756	G	T	35	0.114	31	63.484	7.953	4	55.000	8.679	31	4	GAS6	ncRNA_UTR5	NA
RCC_T4--GL	chr13:114535756	G	NA	43	0	43	66.930	3.542	0	0	0	43	0	GAS6	ncRNA_UTR5	NA
RCC_T4--1	chr13:25528094	A	G	50	0.120	44	68.205	3.819	6	64.167	3.971	44	6	TPTE2P1	ncRNA_intronic	NA
RCC_T4--2	chr13:25528094	A	NA	55	0	55	67.055	6.953	0	0	0	55	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--3	chr13:25528094	A	NA	26	0	26	64.577	8.477	0	0	0	26	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--4	chr13:25528094	A	NA	58	0	58	68.276	3.483	0	0	0	58	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--5	chr13:25528094	A	NA	56	0	56	68.625	4.409	0	0	0	56	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--6	chr13:25528094	A	NA	72	0	72	67.847	5.422	0	0	0	72	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--7	chr13:25528094	A	NA	60	0	59	65.797	6.549	0	0	0	59	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--GL	chr13:25528094	A	NA	45	0	45	68.444	3.116	0	0	0	45	0	TPTE2P1	ncRNA_intronic	NA
RCC_T4--1	chr13:32527109	C	NA	58	0	58	66.931	6.263	0	0	0	58	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--2	chr13:32527109	C	NA	44	0	44	64.818	4.843	0	0	0	44	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--3	chr13:32527109	C	A	61	0.115	54	66.278	4.640	7	62.429	3.780	54	7	EEF1DP3	ncRNA_intronic	NA
RCC_T4--4	chr13:32527109	C	NA	72	0	72	65.694	7.559	0	0	0	72	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--5	chr13:32527109	C	NA	56	0	56	65.857	6.259	0	0	0	56	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--6	chr13:32527109	C	NA	40	0	40	66.050	7.476	0	0	0	40	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--7	chr13:32527109	C	NA	76	0	76	66.961	5.255	0	0	0	76	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--GL	chr13:32527109	C	NA	67	0	67	65.627	6.331	0	0	0	67	0	EEF1DP3	ncRNA_intronic	NA
RCC_T4--1	chr13:32836420	C	NA	58	0	58	68.638	3.950	0	0	0	58	0	FRY	intronic	NA
RCC_T4--2	chr13:32836420	C	NA	55	0	55	67.709	5.276	0	0	0	55	0	FRY	intronic	NA
RCC_T4--3	chr13:32836420	C	NA	52	0	52	67.462	5.985	0	0	0	52	0	FRY	intronic	NA
RCC_T4--4	chr13:32836420	C	NA	56	0	56	67.482	4.268	0	0	0	56	0	FRY	intronic	NA
RCC_T4--5	chr13:32836420	C	NA	53	0	53	68.434	3.930	0	0	0	53	0	FRY	intronic	NA
RCC_T4--6	chr13:32836420	C	G	71	0.310	49	68.939	3.375	22	69.773	3.007	49	22	FRY	intronic	NA
RCC_T4--7	chr13:32836420	C	NA	79	0	79	67.481	6.334	0	0	0	79	0	FRY	intronic	NA
RCC_T4--GL	chr13:32836420	C	NA	54	0	54	68.481	4.997	0	0	0	54	0	FRY	intronic	NA
RCC_T4--1	chr13:33332609	C	NA	136	0	135	68.548	6.036	0	0	0	135	0	PDS5B	intronic	NA
RCC_T4--2	chr13:33332609	C	NA	149	0	149	68.631	4.439	0	0	0	149	0	PDS5B	intronic	NA
RCC_T4--3	chr13:33332609	C	NA	113	0	113	69.566	3.335	0	0	0	113	0	PDS5B	intronic	NA
RCC_T4--4	chr13:33332609	C	NA	137	0	137	69.131	4.133	0	0	0	137	0	PDS5B	intronic	NA
RCC_T4--5	chr13:33332609	C	NA	130	0	129	69.287	3.829	0	0	0	129	0	PDS5B	intronic	NA
RCC_T4--6	chr13:33332609	C	T	168	0.333	112	69.071	4.417	56	69.875	2.580	112	56	PDS5B	intronic	NA
RCC_T4--7	chr13:33332609	C	NA	150	0	150	68.647	5.400	0	0	0	150	0	PDS5B	intronic	NA
RCC_T4--GL	chr13:33332609	C	NA	149	0	149	69.221	4.507	0	0	0	149	0	PDS5B	intronic	NA
RCC_T4--1	chr1:36202031	T	NA	70	0	69	68.855	5.007	0	0	0	69	0	CLSPN	UTR3	NA
RCC_T4--2	chr1:36202031	T	C	63	0.016	62	67.952	3.699	1	60.000	0.000	62	1	CLSPN	UTR3	NA
RCC_T4--3	chr1:36202031	T	NA	66	0	66	67.985	3.727	0	0	0	66	0	CLSPN	UTR3	NA
RCC_T4--4	chr1:36202031	T	C	65	0.108	58	67.379	5.687	7	57.000	14.765	58	7	CLSPN	UTR3	NA
RCC_T4--5	chr1:36202031	T	NA	64	0	64	66.766	6.687	0	0	0	64	0	CLSPN	UTR3	NA
RCC_T4--6	chr1:36202031	T	NA	77	0	77	68.000	5.940	0	0	0	77	0	CLSPN	UTR3	NA
RCC_T4--7	chr1:36202031	T	NA	64	0	64	67.250	5.888	0	0	0	64	0	CLSPN	UTR3	NA
RCC_T4--GL	chr1:36202031	T	NA	66	0	66	68.652	3.515	0	0	0	66	0	CLSPN	UTR3	NA
RCC_T4--1	chr1:38305774	G	NA	98	0	98	65.796	5.829	0	0	0	98	0	MTF1	exonic	synonymous_SNV
RCC_T4--2	chr1:38305774	G	NA	97	0	97	63.113	8.956	0	0	0	97	0	MTF1	exonic	synonymous_SNV
RCC_T4--3	chr1:38305774	G	NA	77	0	77	63.377	9.388	0	0	0	77	0	MTF1	exonic	synonymous_SNV
RCC_T4--4	chr1:38305774	G	NA	109	0	109	65.798	6.587	0	0	0	109	0	MTF1	exonic	synonymous_SNV
RCC_T4--5	chr1:38305774	G	NA	134	0	134	64.866	8.699	0	0	0	134	0	MTF1	exonic	synonymous_SNV
RCC_T4--6	chr1:38305774	G	NA	127	0	127	66.339	6.561	0	0	0	127	0	MTF1	exonic	synonymous_SNV
RCC_T4--7	chr1:38305774	G	A	71	0.169	58	66.103	6.622	12	62.833	3.380	58	12	MTF1	exonic	synonymous_SNV
RCC_T4--GL	chr1:38305774	G	NA	75	0	75	65.760	6.855	0	0	0	75	0	MTF1	exonic	synonymous_SNV
RCC_T4--1	chr1:39889619	T	G	70	0.057	66	54.136	11.072	4	38.750	4.193	66	4	MACF1	intronic	NA
RCC_T4--2	chr1:39889619	T	G	48	0.125	42	53.619	11.574	6	35.833	1.472	42	6	MACF1	intronic	NA
RCC_T4--3	chr1:39889619	T	G	64	0.078	58	51.190	10.655	5	36.200	0.447	58	5	MACF1	intronic	NA
RCC_T4--4	chr1:39889619	T	G	35	0.114	31	52.129	11.147	4	38.750	4.193	31	4	MACF1	intronic	NA
RCC_T4--5	chr1:39889619	T	G	52	0.192	41	50.341	10.702	10	38.600	5.254	41	10	MACF1	intronic	NA
RCC_T4--6	chr1:39889619	T	G	55	0.109	47	50.191	11.080	6	37.167	0.753	47	6	MACF1	intronic	NA
RCC_T4--7	chr1:39889619	T	G	30	0.133	26	54.923	10.755	4	35.500	1.732	26	4	MACF1	intronic	NA
RCC_T4--GL	chr1:39889619	T	NA	48	0	48	53.417	11.230	0	0	0	48	0	MACF1	intronic	NA
RCC_T4--1	chr14:101198327	C	NA	42	0	42	66.143	7.145	0	0	0	42	0	DLK1	intronic	NA
RCC_T4--2	chr14:101198327	C	A	26	0.038	25	66.960	5.224	1	54.000	0.000	25	1	DLK1	intronic	NA
RCC_T4--3	chr14:101198327	C	NA	23	0	23	64.652	10.482	0	0	0	23	0	DLK1	intronic	NA
RCC_T4--4	chr14:101198327	C	NA	35	0	34	63.353	10.171	0	0	0	34	0	DLK1	intronic	NA
RCC_T4--5	chr14:101198327	C	NA	39	0	38	65.895	7.355	0	0	0	38	0	DLK1	intronic	NA
RCC_T4--6	chr14:101198327	C	A	31	0.129	27	64.889	9.031	4	66.000	0.000	27	4	DLK1	intronic	NA
RCC_T4--7	chr14:101198327	C	NA	36	0	36	65.639	7.267	0	0	0	36	0	DLK1	intronic	NA
RCC_T4--GL	chr14:101198327	C	NA	42	0	42	64.881	7.565	0	0	0	42	0	DLK1	intronic	NA
RCC_T4--1	chr14:105420709	C	T	36	0.111	32	66.812	4.610	4	64.500	3.109	32	4	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--2	chr14:105420709	C	NA	43	0	43	61.000	11.414	0	0	0	43	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--3	chr14:105420709	C	NA	50	0	50	62.180	8.912	0	0	0	50	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--4	chr14:105420709	C	NA	49	0	49	63.184	10.394	0	0	0	49	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--5	chr14:105420709	C	NA	58	0	58	63.810	9.506	0	0	0	58	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--6	chr14:105420709	C	NA	45	0	45	63.311	8.972	0	0	0	45	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--7	chr14:105420709	C	NA	45	0	45	65.556	6.798	0	0	0	45	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr14:105420709	C	NA	47	0	47	63.681	8.036	0	0	0	47	0	AHNAK2	exonic	nonsynonymous_SNV
RCC_T4--1	chr14:22616271	C	A	53	0.113	47	68.064	3.608	6	64.167	4.535	47	6	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--2	chr14:22616271	C	NA	62	0	62	67.581	6.034	0	0	0	62	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--3	chr14:22616271	C	NA	53	0	53	67.698	4.730	0	0	0	53	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--4	chr14:22616271	C	NA	64	0	64	66.797	6.234	0	0	0	64	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--5	chr14:22616271	C	NA	60	0	60	66.250	7.745	0	0	0	60	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--6	chr14:22616271	C	NA	75	0	75	65.480	7.204	0	0	0	75	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--7	chr14:22616271	C	NA	86	0	86	67.326	5.350	0	0	0	86	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--GL	chr14:22616271	C	NA	59	0	59	66.390	7.081	0	0	0	59	0	OR4E2(dist=482033),DAD1(dist=417536)	intergenic	NA
RCC_T4--1	chr14:24647211	T	G	55	0.109	49	51.878	10.797	6	37.333	4.033	49	6	REC8	intronic	NA
RCC_T4--2	chr14:24647211	T	G	50	0.160	40	52.675	12.474	8	38.500	5.782	40	8	REC8	intronic	NA
RCC_T4--3	chr14:24647211	T	G	25	0.240	19	53.632	11.582	6	36.833	3.312	19	6	REC8	intronic	NA
RCC_T4--4	chr14:24647211	T	G	41	0.195	33	55.121	10.252	8	37.000	3.928	33	8	REC8	intronic	NA
RCC_T4--5	chr14:24647211	T	G	40	0.050	37	53.351	12.634	2	36.500	0.707	37	2	REC8	intronic	NA
RCC_T4--6	chr14:24647211	T	G	45	0.156	38	52.632	13.522	7	35.000	1.915	38	7	REC8	intronic	NA
RCC_T4--7	chr14:24647211	T	G	48	0.083	43	50.326	12.045	4	36.750	0.500	43	4	REC8	intronic	NA
RCC_T4--GL	chr14:24647211	T	NA	33	0	33	56.091	11.479	0	0	0	33	0	REC8	intronic	NA
RCC_T4--1	chr14:24710921	T	NA	47	0	47	66.723	6.775	0	0	0	47	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--2	chr14:24710921	T	NA	47	0	47	66.851	4.428	0	0	0	47	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--3	chr14:24710921	T	C	35	0.114	31	66.548	4.795	4	64.250	1.258	31	4	TINF2	exonic	nonsynonymous_SNV
RCC_T4--4	chr14:24710921	T	NA	56	0	56	65.393	8.033	0	0	0	56	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--5	chr14:24710921	T	NA	37	0	37	62.757	9.717	0	0	0	37	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--6	chr14:24710921	T	NA	41	0	40	67.150	4.167	0	0	0	40	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--7	chr14:24710921	T	NA	40	0	40	66.050	6.127	0	0	0	40	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr14:24710921	T	NA	36	0	36	68.639	3.072	0	0	0	36	0	TINF2	exonic	nonsynonymous_SNV
RCC_T4--1	chr14:38276620	C	T	129	0.326	87	68.736	4.222	42	65.762	6.875	87	42	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--2	chr14:38276620	C	T	105	0.286	75	67.467	5.361	30	64.567	7.084	75	30	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--3	chr14:38276620	C	T	123	0.293	87	65.920	7.205	36	65.528	6.331	87	36	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--4	chr14:38276620	C	T	142	0.169	118	67.356	6.147	24	66.250	6.489	118	24	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--5	chr14:38276620	C	T	179	0.324	120	66.842	6.173	58	65.086	8.281	120	58	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--6	chr14:38276620	C	T	161	0.031	156	67.442	5.478	5	64.800	7.328	156	5	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--7	chr14:38276620	C	T	150	0.213	118	67.220	6.110	32	65.656	5.603	118	32	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--GL	chr14:38276620	C	NA	156	0	156	68.449	4.264	0	0	0	156	0	FOXA1(dist=212295),SSTR1(dist=400584)	intergenic	NA
RCC_T4--1	chr14:45628285	A	T	69	0.014	44	68.932	5.398	1	68.000	0.000	44	1	FANCM	intronic	NA
RCC_T4--2	chr14:45628285	A	T	35	0.057	13	68.077	3.303	2	65.500	0.707	13	2	FANCM	intronic	NA
RCC_T4--3	chr14:45628285	A	T	52	0.058	29	65.552	8.335	3	66.000	1.732	29	3	FANCM	intronic	NA
RCC_T4--4	chr14:45628285	A	T	68	0.015	38	67.789	4.332	1	62.000	0.000	38	1	FANCM	intronic	NA
RCC_T4--5	chr14:45628285	A	T	48	0.104	27	69.556	2.736	5	65.000	1.871	27	5	FANCM	intronic	NA
RCC_T4--6	chr14:45628285	A	T	96	0.062	55	69.109	2.967	6	64.500	3.271	55	6	FANCM	intronic	NA
RCC_T4--7	chr14:45628285	A	T	76	0.026	47	69.362	3.082	2	66.000	0.000	47	2	FANCM	intronic	NA
RCC_T4--GL	chr14:45628285	A	NA	78	0	36	68.028	7.085	0	0	0	36	0	FANCM	intronic	NA
RCC_T4--1	chr1:45101360	A	C	32	0.062	30	59.933	9.913	2	36.500	0.707	30	2	RNF220	intronic	NA
RCC_T4--2	chr1:45101360	A	C	34	0.059	31	58.129	9.763	2	34.500	2.121	31	2	RNF220	intronic	NA
RCC_T4--3	chr1:45101360	A	C	24	0.250	18	55.611	12.030	6	35.833	1.472	18	6	RNF220	intronic	NA
RCC_T4--4	chr1:45101360	A	C	27	0.037	25	56.280	12.341	1	36.000	0.000	25	1	RNF220	intronic	NA
RCC_T4--5	chr1:45101360	A	C	38	0.026	36	60.861	9.191	1	33.000	0.000	36	1	RNF220	intronic	NA
RCC_T4--6	chr1:45101360	A	C	27	0.074	25	54.080	12.463	2	40.000	9.899	25	2	RNF220	intronic	NA
RCC_T4--7	chr1:45101360	A	C	31	0.032	30	57.133	11.855	1	37.000	0.000	30	1	RNF220	intronic	NA
RCC_T4--GL	chr1:45101360	A	NA	40	0	39	59.179	10.128	0	0	0	39	0	RNF220	intronic	NA
RCC_T4--1	chr14:51081300	C	NA	44	0	44	68.364	3.865	0	0	0	44	0	ATL1	intronic	NA
RCC_T4--2	chr14:51081300	C	G	25	0.160	21	66.000	7.253	4	66.000	1.826	21	4	ATL1	intronic	NA
RCC_T4--3	chr14:51081300	C	NA	25	0	25	68.160	3.923	0	0	0	25	0	ATL1	intronic	NA
RCC_T4--4	chr14:51081300	C	NA	35	0	35	69.714	2.834	0	0	0	35	0	ATL1	intronic	NA
RCC_T4--5	chr14:51081300	C	NA	48	0	48	67.083	4.793	0	0	0	48	0	ATL1	intronic	NA
RCC_T4--6	chr14:51081300	C	NA	48	0	48	68.688	4.459	0	0	0	48	0	ATL1	intronic	NA
RCC_T4--7	chr14:51081300	C	NA	32	0	32	69.219	3.200	0	0	0	32	0	ATL1	intronic	NA
RCC_T4--GL	chr14:51081300	C	NA	38	0	38	65.868	7.117	0	0	0	38	0	ATL1	intronic	NA
RCC_T4--1	chr14:52164812	T	G	40	0.050	38	54.895	9.165	2	35.000	2.828	38	2	FRMD6	intronic	NA
RCC_T4--2	chr14:52164812	T	G	41	0.146	34	56.324	9.886	6	43.167	9.347	34	6	FRMD6	intronic	NA
RCC_T4--3	chr14:52164812	T	G	38	0.026	36	56.028	8.765	1	37.000	0.000	36	1	FRMD6	intronic	NA
RCC_T4--4	chr14:52164812	T	G	62	0.032	59	57.068	8.668	2	33.000	0.000	59	2	FRMD6	intronic	NA
RCC_T4--5	chr14:52164812	T	G	60	0.017	59	57.458	9.473	1	39.000	0.000	59	1	FRMD6	intronic	NA
RCC_T4--6	chr14:52164812	T	G	63	0.016	60	57.583	8.329	1	37.000	0.000	60	1	FRMD6	intronic	NA
RCC_T4--7	chr14:52164812	T	NA	66	0	66	59.515	7.919	0	0	0	66	0	FRMD6	intronic	NA
RCC_T4--GL	chr14:52164812	T	NA	71	0	69	55.565	10.596	0	0	0	69	0	FRMD6	intronic	NA
RCC_T4--1	chr14:76105763	T	G	56	0.018	55	68.327	6.092	1	66.000	0.000	55	1	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--2	chr14:76105763	T	NA	31	0	31	67.645	4.184	0	0	0	31	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--3	chr14:76105763	T	G	41	0.146	35	67.800	6.694	6	66.833	1.602	35	6	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--4	chr14:76105763	T	NA	47	0	47	68.383	4.342	0	0	0	47	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--5	chr14:76105763	T	NA	43	0	43	67.535	6.519	0	0	0	43	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--6	chr14:76105763	T	NA	66	0	66	67.848	5.765	0	0	0	66	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--7	chr14:76105763	T	NA	44	0	44	66.568	6.649	0	0	0	44	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr14:76105763	T	NA	51	0	51	68.725	3.661	0	0	0	51	0	FLVCR2	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:48652880	G	NA	22	0	22	68.773	2.245	0	0	0	22	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--2	chr1:48652880	G	NA	29	0	29	67.724	3.504	0	0	0	29	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--3	chr1:48652880	G	NA	23	0	23	66.609	3.870	0	0	0	23	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--4	chr1:48652880	G	NA	25	0	25	67.240	3.778	0	0	0	25	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--5	chr1:48652880	G	T	25	0.160	21	67.619	2.692	4	68.500	3.416	21	4	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--6	chr1:48652880	G	NA	22	0	22	65.682	8.560	0	0	0	22	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--7	chr1:48652880	G	NA	25	0	25	65.960	7.956	0	0	0	25	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--GL	chr1:48652880	G	NA	36	0	36	66.917	8.726	0	0	0	36	0	SKINTL(dist=4780),SLC5A9(dist=35477)	intergenic	NA
RCC_T4--1	chr14:95100751	G	T	73	0.014	35	69.000	2.690	1	67.000	0.000	35	1	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--2	chr14:95100751	G	T	58	0.069	16	64.562	6.088	4	66.000	1.155	16	4	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--3	chr14:95100751	G	T	57	0.035	28	68.357	3.413	2	66.000	1.414	28	2	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--4	chr14:95100751	G	T	70	0.014	42	67.524	5.425	1	62.000	0.000	42	1	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--5	chr14:95100751	G	T	64	0.016	39	65.795	8.951	1	65.000	0.000	39	1	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--6	chr14:95100751	G	T	75	0.027	38	68.684	5.483	2	66.500	2.121	38	2	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--7	chr14:95100751	G	T	76	0.039	41	67.488	4.796	3	66.000	1.732	41	3	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--GL	chr14:95100751	G	NA	60	0	38	68.395	3.374	0	0	0	38	0	SERPINA3(dist=10361),SERPINA13P(dist=6311)	intergenic	NA
RCC_T4--1	chr15:23811661	C	NA	65	0	65	67.262	5.922	0	0	0	65	0	MKRN3	exonic	synonymous_SNV
RCC_T4--2	chr15:23811661	C	NA	47	0	47	67.489	6.372	0	0	0	47	0	MKRN3	exonic	synonymous_SNV
RCC_T4--3	chr15:23811661	C	NA	55	0	55	67.309	3.671	0	0	0	55	0	MKRN3	exonic	synonymous_SNV
RCC_T4--4	chr15:23811661	C	T	64	0.109	57	66.877	5.085	7	64.714	5.345	57	7	MKRN3	exonic	synonymous_SNV
RCC_T4--5	chr15:23811661	C	NA	64	0	64	65.969	7.131	0	0	0	64	0	MKRN3	exonic	synonymous_SNV
RCC_T4--6	chr15:23811661	C	NA	68	0	68	65.662	6.354	0	0	0	68	0	MKRN3	exonic	synonymous_SNV
RCC_T4--7	chr15:23811661	C	NA	64	0	64	67.719	5.528	0	0	0	64	0	MKRN3	exonic	synonymous_SNV
RCC_T4--GL	chr15:23811661	C	NA	68	0	68	66.103	6.275	0	0	0	68	0	MKRN3	exonic	synonymous_SNV
RCC_T4--1	chr1:52826579	C	A	52	0.058	49	57.878	10.222	3	38.667	0.577	49	3	CC2D1B	intronic	NA
RCC_T4--2	chr1:52826579	C	A	36	0.028	35	57.000	8.785	1	41.000	0.000	35	1	CC2D1B	intronic	NA
RCC_T4--3	chr1:52826579	C	A	32	0.062	30	53.133	10.268	2	45.000	5.657	30	2	CC2D1B	intronic	NA
RCC_T4--4	chr1:52826579	C	A	48	0.125	42	56.167	9.647	6	42.167	6.911	42	6	CC2D1B	intronic	NA
RCC_T4--5	chr1:52826579	C	A	46	0.022	45	55.844	10.848	1	38.000	0.000	45	1	CC2D1B	intronic	NA
RCC_T4--6	chr1:52826579	C	A	47	0.149	36	54.333	11.296	7	43.143	4.375	36	7	CC2D1B	intronic	NA
RCC_T4--7	chr1:52826579	C	A	47	0.043	43	56.698	9.655	2	53.000	5.657	43	2	CC2D1B	intronic	NA
RCC_T4--GL	chr1:52826579	C	NA	38	0	38	54.974	9.683	0	0	0	38	0	CC2D1B	intronic	NA
RCC_T4--1	chr15:34109172	T	NA	150	0	150	65.227	8.310	0	0	0	150	0	RYR3	intronic	NA
RCC_T4--2	chr15:34109172	T	NA	145	0	145	65.690	6.393	0	0	0	145	0	RYR3	intronic	NA
RCC_T4--3	chr15:34109172	T	A	139	0.007	137	65.336	8.139	1	39.000	0.000	137	1	RYR3	intronic	NA
RCC_T4--4	chr15:34109172	T	NA	152	0	152	65.599	6.714	0	0	0	152	0	RYR3	intronic	NA
RCC_T4--5	chr15:34109172	T	A	174	0.006	172	65.029	8.231	1	39.000	0.000	172	1	RYR3	intronic	NA
RCC_T4--6	chr15:34109172	T	A	151	0.291	106	66.066	6.547	44	61.409	9.146	106	44	RYR3	intronic	NA
RCC_T4--7	chr15:34109172	T	NA	150	0	150	64.893	8.795	0	0	0	150	0	RYR3	intronic	NA
RCC_T4--GL	chr15:34109172	T	NA	166	0	165	66.267	6.477	0	0	0	165	0	RYR3	intronic	NA
RCC_T4--1	chr1:53727672	C	NA	45	0	45	68.622	5.403	0	0	0	45	0	LRP8	intronic	NA
RCC_T4--2	chr1:53727672	C	NA	45	0	45	67.956	4.729	0	0	0	45	0	LRP8	intronic	NA
RCC_T4--3	chr1:53727672	C	NA	50	0	50	67.720	5.771	0	0	0	50	0	LRP8	intronic	NA
RCC_T4--4	chr1:53727672	C	A	54	0.019	53	67.962	5.125	1	42.000	0.000	53	1	LRP8	intronic	NA
RCC_T4--5	chr1:53727672	C	NA	45	0	44	68.432	3.098	0	0	0	44	0	LRP8	intronic	NA
RCC_T4--6	chr1:53727672	C	A	59	0.102	52	65.712	7.964	6	67.333	3.933	52	6	LRP8	intronic	NA
RCC_T4--7	chr1:53727672	C	NA	55	0	55	67.382	6.881	0	0	0	55	0	LRP8	intronic	NA
RCC_T4--GL	chr1:53727672	C	NA	67	0	67	68.493	4.176	0	0	0	67	0	LRP8	intronic	NA
RCC_T4--1	chr15:45564521	C	T	94	0.202	75	67.400	5.934	19	67.368	4.621	75	19	SLC28A2	exonic	synonymous_SNV
RCC_T4--2	chr15:45564521	C	T	121	0.405	72	67.708	4.448	49	66.918	6.254	72	49	SLC28A2	exonic	synonymous_SNV
RCC_T4--3	chr15:45564521	C	T	112	0.250	84	66.571	6.247	28	64.893	9.938	84	28	SLC28A2	exonic	synonymous_SNV
RCC_T4--4	chr15:45564521	C	T	117	0.214	91	66.934	4.816	25	66.040	4.188	91	25	SLC28A2	exonic	synonymous_SNV
RCC_T4--5	chr15:45564521	C	T	134	0.291	95	66.926	6.340	39	65.128	8.004	95	39	SLC28A2	exonic	synonymous_SNV
RCC_T4--6	chr15:45564521	C	T	122	0.041	117	67.667	5.347	5	66.800	7.530	117	5	SLC28A2	exonic	synonymous_SNV
RCC_T4--7	chr15:45564521	C	T	104	0.356	67	66.045	7.199	37	66.135	5.427	67	37	SLC28A2	exonic	synonymous_SNV
RCC_T4--GL	chr15:45564521	C	NA	131	0	131	67.145	6.494	0	0	0	131	0	SLC28A2	exonic	synonymous_SNV
RCC_T4--1	chr15:50535177	C	NA	106	0	106	67.104	4.366	0	0	0	106	0	HDC	exonic	synonymous_SNV
RCC_T4--2	chr15:50535177	C	T	103	0.262	76	66.671	4.349	27	65.481	5.577	76	27	HDC	exonic	synonymous_SNV
RCC_T4--3	chr15:50535177	C	NA	88	0	88	65.375	6.439	0	0	0	88	0	HDC	exonic	synonymous_SNV
RCC_T4--4	chr15:50535177	C	NA	101	0	100	66.000	5.574	0	0	0	100	0	HDC	exonic	synonymous_SNV
RCC_T4--5	chr15:50535177	C	NA	137	0	136	66.640	5.637	0	0	0	136	0	HDC	exonic	synonymous_SNV
RCC_T4--6	chr15:50535177	C	NA	125	0	125	65.168	7.770	0	0	0	125	0	HDC	exonic	synonymous_SNV
RCC_T4--7	chr15:50535177	C	NA	107	0	107	66.374	6.715	0	0	0	107	0	HDC	exonic	synonymous_SNV
RCC_T4--GL	chr15:50535177	C	NA	125	0	125	65.504	6.690	0	0	0	125	0	HDC	exonic	synonymous_SNV
RCC_T4--1	chr15:51984426	C	A	189	0.259	140	68.136	4.726	49	67.122	6.033	140	49	SCG3	exonic	nonsynonymous_SNV
RCC_T4--2	chr15:51984426	C	A	257	0.230	198	67.646	4.983	59	65.864	6.789	198	59	SCG3	exonic	nonsynonymous_SNV
RCC_T4--3	chr15:51984426	C	A	208	0.231	160	67.800	6.212	48	66.604	5.346	160	48	SCG3	exonic	nonsynonymous_SNV
RCC_T4--4	chr15:51984426	C	A	213	0.178	175	67.451	6.925	38	65.526	8.689	175	38	SCG3	exonic	nonsynonymous_SNV
RCC_T4--5	chr15:51984426	C	A	267	0.285	190	67.658	5.462	76	66.105	5.119	190	76	SCG3	exonic	nonsynonymous_SNV
RCC_T4--6	chr15:51984426	C	A	274	0.376	171	68.421	4.625	103	66.757	5.880	171	103	SCG3	exonic	nonsynonymous_SNV
RCC_T4--7	chr15:51984426	C	A	269	0.349	175	67.594	5.042	94	66.160	5.966	175	94	SCG3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr15:51984426	C	NA	235	0	235	67.881	5.630	0	0	0	235	0	SCG3	exonic	nonsynonymous_SNV
RCC_T4--1	chr15:54008953	C	NA	29	0	29	67.000	7.402	0	0	0	29	0	WDR72	intronic	NA
RCC_T4--2	chr15:54008953	C	NA	39	0	39	67.205	6.944	0	0	0	39	0	WDR72	intronic	NA
RCC_T4--3	chr15:54008953	C	T	39	0.026	38	66.263	8.163	1	72.000	0.000	38	1	WDR72	intronic	NA
RCC_T4--4	chr15:54008953	C	NA	48	0	48	65.458	6.133	0	0	0	48	0	WDR72	intronic	NA
RCC_T4--5	chr15:54008953	C	NA	49	0	49	67.633	3.678	0	0	0	49	0	WDR72	intronic	NA
RCC_T4--6	chr15:54008953	C	T	43	0.465	23	66.652	5.507	20	68.450	4.006	23	20	WDR72	intronic	NA
RCC_T4--7	chr15:54008953	C	NA	50	0	50	67.860	6.565	0	0	0	50	0	WDR72	intronic	NA
RCC_T4--GL	chr15:54008953	C	NA	41	0	41	67.878	5.515	0	0	0	41	0	WDR72	intronic	NA
RCC_T4--1	chr1:55518290	C	NA	43	0	43	59.163	8.174	0	0	0	43	0	PCSK9	intronic	NA
RCC_T4--2	chr1:55518290	C	NA	48	0	48	57.562	8.320	0	0	0	48	0	PCSK9	intronic	NA
RCC_T4--3	chr1:55518290	C	NA	47	0	47	56.000	9.365	0	0	0	47	0	PCSK9	intronic	NA
RCC_T4--4	chr1:55518290	C	NA	35	0	35	59.543	7.629	0	0	0	35	0	PCSK9	intronic	NA
RCC_T4--5	chr1:55518290	C	A	27	0.037	26	59.115	8.253	1	36.000	0.000	26	1	PCSK9	intronic	NA
RCC_T4--6	chr1:55518290	C	A	25	0.040	24	59.500	8.283	1	33.000	0.000	24	1	PCSK9	intronic	NA
RCC_T4--7	chr1:55518290	C	A	25	0.160	21	55.571	11.647	4	59.000	8.124	21	4	PCSK9	intronic	NA
RCC_T4--GL	chr1:55518290	C	NA	41	0	41	58.317	8.371	0	0	0	41	0	PCSK9	intronic	NA
RCC_T4--1	chr15:68624822	G	NA	33	0	33	65.667	7.651	0	0	0	33	0	ITGA11	intronic	NA
RCC_T4--2	chr15:68624822	G	NA	62	0	62	66.452	4.884	0	0	0	62	0	ITGA11	intronic	NA
RCC_T4--3	chr15:68624822	G	NA	53	0	53	65.132	7.246	0	0	0	53	0	ITGA11	intronic	NA
RCC_T4--4	chr15:68624822	G	NA	73	0	73	63.110	9.160	0	0	0	73	0	ITGA11	intronic	NA
RCC_T4--5	chr15:68624822	G	NA	52	0	52	66.385	6.408	0	0	0	52	0	ITGA11	intronic	NA
RCC_T4--6	chr15:68624822	G	T	62	0.226	48	63.875	8.170	14	64.071	6.318	48	14	ITGA11	intronic	NA
RCC_T4--7	chr15:68624822	G	NA	61	0	61	65.705	6.018	0	0	0	61	0	ITGA11	intronic	NA
RCC_T4--GL	chr15:68624822	G	NA	64	0	64	66.500	5.431	0	0	0	64	0	ITGA11	intronic	NA
RCC_T4--1	chr15:74181380	C	NA	25	0	25	67.320	3.412	0	0	0	25	0	TBC1D21	intronic	NA
RCC_T4--2	chr15:74181380	C	NA	16	0	16	64.875	7.856	0	0	0	16	0	TBC1D21	intronic	NA
RCC_T4--3	chr15:74181380	C	NA	35	0	35	66.486	4.280	0	0	0	35	0	TBC1D21	intronic	NA
RCC_T4--4	chr15:74181380	C	NA	45	0	45	64.889	7.958	0	0	0	45	0	TBC1D21	intronic	NA
RCC_T4--5	chr15:74181380	C	A	36	0.111	32	62.906	10.807	4	61.750	7.228	32	4	TBC1D21	intronic	NA
RCC_T4--6	chr15:74181380	C	NA	29	0	29	66.138	5.630	0	0	0	29	0	TBC1D21	intronic	NA
RCC_T4--7	chr15:74181380	C	NA	30	0	30	66.000	5.065	0	0	0	30	0	TBC1D21	intronic	NA
RCC_T4--GL	chr15:74181380	C	NA	40	0	40	64.525	8.203	0	0	0	40	0	TBC1D21	intronic	NA
RCC_T4--1	chr15:89383224	G	NA	39	0	39	66.487	6.398	0	0	0	39	0	ACAN	intronic	NA
RCC_T4--2	chr15:89383224	G	NA	23	0	23	63.304	10.692	0	0	0	23	0	ACAN	intronic	NA
RCC_T4--3	chr15:89383224	G	NA	24	0	24	63.417	9.413	0	0	0	24	0	ACAN	intronic	NA
RCC_T4--4	chr15:89383224	G	T	28	0.143	24	64.708	8.175	4	56.750	11.177	24	4	ACAN	intronic	NA
RCC_T4--5	chr15:89383224	G	NA	30	0	30	63.833	10.107	0	0	0	30	0	ACAN	intronic	NA
RCC_T4--6	chr15:89383224	G	NA	24	0	24	61.667	10.797	0	0	0	24	0	ACAN	intronic	NA
RCC_T4--7	chr15:89383224	G	NA	24	0	24	66.125	5.448	0	0	0	24	0	ACAN	intronic	NA
RCC_T4--GL	chr15:89383224	G	NA	33	0	33	67.061	4.555	0	0	0	33	0	ACAN	intronic	NA
RCC_T4--1	chr15:90022517	C	NA	44	0	44	64.886	7.346	0	0	0	44	0	RHCG	intronic	NA
RCC_T4--2	chr15:90022517	C	A	48	0.146	41	66.244	4.230	7	56.714	12.093	41	7	RHCG	intronic	NA
RCC_T4--3	chr15:90022517	C	NA	36	0	36	67.306	3.232	0	0	0	36	0	RHCG	intronic	NA
RCC_T4--4	chr15:90022517	C	NA	41	0	41	65.317	6.593	0	0	0	41	0	RHCG	intronic	NA
RCC_T4--5	chr15:90022517	C	NA	32	0	32	64.281	8.157	0	0	0	32	0	RHCG	intronic	NA
RCC_T4--6	chr15:90022517	C	NA	32	0	32	66.281	9.443	0	0	0	32	0	RHCG	intronic	NA
RCC_T4--7	chr15:90022517	C	NA	48	0	48	64.125	9.036	0	0	0	48	0	RHCG	intronic	NA
RCC_T4--GL	chr15:90022517	C	NA	38	0	38	66.132	4.467	0	0	0	38	0	RHCG	intronic	NA
RCC_T4--1	chr1:5937188	C	NA	34	0	34	65.853	5.269	0	0	0	34	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--2	chr1:5937188	C	NA	32	0	32	66.156	4.451	0	0	0	32	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--3	chr1:5937188	C	NA	32	0	32	64.812	9.039	0	0	0	32	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--4	chr1:5937188	C	T	30	0.133	26	65.923	7.869	4	62.000	5.477	26	4	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--5	chr1:5937188	C	NA	36	0	36	65.639	6.312	0	0	0	36	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--6	chr1:5937188	C	NA	31	0	31	65.839	5.652	0	0	0	31	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--7	chr1:5937188	C	T	33	0.030	32	65.594	6.928	1	61.000	0.000	32	1	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr1:5937188	C	NA	37	0	37	66.784	6.404	0	0	0	37	0	NPHP4	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:12136862	T	NA	60	0	60	65.733	6.553	0	0	0	60	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:12136862	T	NA	46	0	46	63.848	6.289	0	0	0	46	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:12136862	T	NA	40	0	40	64.400	5.569	0	0	0	40	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:12136862	T	C	53	0.113	47	64.128	8.917	6	66.000	0.000	47	6	SNX29	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:12136862	T	NA	53	0	53	66.132	5.133	0	0	0	53	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:12136862	T	NA	40	0	40	65.225	6.335	0	0	0	40	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:12136862	T	NA	25	0	25	64.000	8.539	0	0	0	25	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:12136862	T	NA	34	0	34	63.882	8.253	0	0	0	34	0	SNX29	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:15838979	C	NA	85	0	85	63.424	7.719	0	0	0	85	0	MYH11	intronic	NA
RCC_T4--2	chr16:15838979	C	NA	106	0	106	62.840	8.951	0	0	0	106	0	MYH11	intronic	NA
RCC_T4--3	chr16:15838979	C	T	90	0.111	80	62.737	9.179	10	62.100	4.557	80	10	MYH11	intronic	NA
RCC_T4--4	chr16:15838979	C	NA	95	0	95	63.779	8.339	0	0	0	95	0	MYH11	intronic	NA
RCC_T4--5	chr16:15838979	C	NA	106	0	106	64.217	6.273	0	0	0	106	0	MYH11	intronic	NA
RCC_T4--6	chr16:15838979	C	NA	102	0	102	63.559	8.308	0	0	0	102	0	MYH11	intronic	NA
RCC_T4--7	chr16:15838979	C	NA	54	0	54	64.907	6.382	0	0	0	54	0	MYH11	intronic	NA
RCC_T4--GL	chr16:15838979	C	NA	92	0	92	63.337	7.444	0	0	0	92	0	MYH11	intronic	NA
RCC_T4--1	chr16:23718330	G	NA	60	0	60	68.067	4.867	0	0	0	60	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:23718330	G	NA	62	0	62	65.468	8.759	0	0	0	62	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:23718330	G	NA	40	0	40	67.300	5.997	0	0	0	40	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:23718330	G	A	56	0.107	50	65.560	5.884	6	64.500	4.806	50	6	ERN2	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:23718330	G	NA	60	0	60	67.083	6.698	0	0	0	60	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:23718330	G	NA	48	0	48	67.583	4.649	0	0	0	48	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:23718330	G	NA	46	0	46	68.130	5.592	0	0	0	46	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:23718330	G	NA	63	0	63	67.175	6.184	0	0	0	63	0	ERN2	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:29913001	C	NA	56	0	56	65.179	5.813	0	0	0	56	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:29913001	C	NA	52	0	52	64.731	7.570	0	0	0	52	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:29913001	C	NA	52	0	52	63.712	7.408	0	0	0	52	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:29913001	C	NA	53	0	53	63.491	9.994	0	0	0	53	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:29913001	C	NA	57	0	57	64.404	9.354	0	0	0	57	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:29913001	C	A	51	0.118	45	62.022	8.981	6	63.167	4.119	45	6	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:29913001	C	NA	49	0	49	66.102	8.053	0	0	0	49	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:29913001	C	NA	37	0	37	64.703	6.262	0	0	0	37	0	ASPHD1	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:31202723	T	G	54	0.037	52	65.846	5.829	2	38.000	1.414	52	2	FUS	exonic	synonymous_SNV
RCC_T4--2	chr16:31202723	T	G	68	0.118	60	64.700	10.063	8	39.000	11.427	60	8	FUS	exonic	synonymous_SNV
RCC_T4--3	chr16:31202723	T	G	41	0.220	32	67.781	3.290	9	46.889	13.688	32	9	FUS	exonic	synonymous_SNV
RCC_T4--4	chr16:31202723	T	G	62	0.097	56	66.161	6.164	6	34.667	4.082	56	6	FUS	exonic	synonymous_SNV
RCC_T4--5	chr16:31202723	T	G	69	0.145	58	65.483	6.783	10	33.700	1.494	58	10	FUS	exonic	synonymous_SNV
RCC_T4--6	chr16:31202723	T	G	78	0.077	72	62.861	9.560	6	35.000	4.899	72	6	FUS	exonic	synonymous_SNV
RCC_T4--7	chr16:31202723	T	G	55	0.127	48	65.667	5.858	7	34.714	4.536	48	7	FUS	exonic	synonymous_SNV
RCC_T4--GL	chr16:31202723	T	NA	59	0	59	65.576	6.828	0	0	0	59	0	FUS	exonic	synonymous_SNV
RCC_T4--1	chr16:343499	G	NA	39	0	39	65.513	7.119	0	0	0	39	0	AXIN1	exonic	synonymous_SNV
RCC_T4--2	chr16:343499	G	NA	29	0	29	64.379	8.033	0	0	0	29	0	AXIN1	exonic	synonymous_SNV
RCC_T4--3	chr16:343499	G	A	36	0.167	30	65.733	8.179	6	58.167	14.689	30	6	AXIN1	exonic	synonymous_SNV
RCC_T4--4	chr16:343499	G	NA	40	0	40	66.900	3.342	0	0	0	40	0	AXIN1	exonic	synonymous_SNV
RCC_T4--5	chr16:343499	G	NA	42	0	42	65.286	7.617	0	0	0	42	0	AXIN1	exonic	synonymous_SNV
RCC_T4--6	chr16:343499	G	NA	40	0	40	64.575	8.233	0	0	0	40	0	AXIN1	exonic	synonymous_SNV
RCC_T4--7	chr16:343499	G	NA	32	0	32	64.031	8.026	0	0	0	32	0	AXIN1	exonic	synonymous_SNV
RCC_T4--GL	chr16:343499	G	NA	34	0	34	65.206	4.081	0	0	0	34	0	AXIN1	exonic	synonymous_SNV
RCC_T4--1	chr16:603366	A	NA	37	0	37	65.541	6.644	0	0	0	37	0	CAPN15	exonic	synonymous_SNV
RCC_T4--2	chr16:603366	A	NA	54	0	54	65.037	6.034	0	0	0	54	0	CAPN15	exonic	synonymous_SNV
RCC_T4--3	chr16:603366	A	NA	53	0	53	64.094	6.995	0	0	0	53	0	CAPN15	exonic	synonymous_SNV
RCC_T4--4	chr16:603366	A	NA	27	0	27	66.667	3.863	0	0	0	27	0	CAPN15	exonic	synonymous_SNV
RCC_T4--5	chr16:603366	A	NA	34	0	34	65.471	8.084	0	0	0	34	0	CAPN15	exonic	synonymous_SNV
RCC_T4--6	chr16:603366	A	T	53	0.113	47	66.660	3.743	6	64.167	3.312	47	6	CAPN15	exonic	synonymous_SNV
RCC_T4--7	chr16:603366	A	NA	40	0	40	66.925	6.443	0	0	0	40	0	CAPN15	exonic	synonymous_SNV
RCC_T4--GL	chr16:603366	A	NA	35	0	35	65.229	6.813	0	0	0	35	0	CAPN15	exonic	synonymous_SNV
RCC_T4--1	chr16:66949919	A	NA	35	0	35	67.657	3.765	0	0	0	35	0	CDH16	intronic	NA
RCC_T4--2	chr16:66949919	A	NA	35	0	35	66.743	3.958	0	0	0	35	0	CDH16	intronic	NA
RCC_T4--3	chr16:66949919	A	T	37	0.108	33	67.818	3.901	4	67.000	3.651	33	4	CDH16	intronic	NA
RCC_T4--4	chr16:66949919	A	NA	42	0	42	67.238	6.536	0	0	0	42	0	CDH16	intronic	NA
RCC_T4--5	chr16:66949919	A	NA	38	0	38	68.026	3.628	0	0	0	38	0	CDH16	intronic	NA
RCC_T4--6	chr16:66949919	A	NA	24	0	24	66.583	7.587	0	0	0	24	0	CDH16	intronic	NA
RCC_T4--7	chr16:66949919	A	NA	29	0	29	68.172	4.774	0	0	0	29	0	CDH16	intronic	NA
RCC_T4--GL	chr16:66949919	A	NA	40	0	39	66.231	5.873	0	0	0	39	0	CDH16	intronic	NA
RCC_T4--1	chr16:67289778	C	NA	28	0	28	66.536	4.401	0	0	0	28	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:67289778	C	NA	26	0	26	65.615	5.084	0	0	0	26	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:67289778	C	NA	24	0	24	63.458	7.751	0	0	0	24	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:67289778	C	NA	32	0	32	64.219	7.321	0	0	0	32	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:67289778	C	A	28	0.143	24	65.333	7.032	4	62.250	5.188	24	4	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:67289778	C	NA	23	0	23	64.913	7.982	0	0	0	23	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:67289778	C	NA	36	0	36	65.667	8.864	0	0	0	36	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:67289778	C	NA	34	0	34	63.765	9.394	0	0	0	34	0	SLC9A5	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:69970104	C	A	52	0.115	46	66.978	4.679	6	66.667	5.785	46	6	WWP2	intronic	NA
RCC_T4--2	chr16:69970104	C	A	50	0.020	49	66.653	7.327	1	68.000	0.000	49	1	WWP2	intronic	NA
RCC_T4--3	chr16:69970104	C	NA	28	0	28	66.071	5.811	0	0	0	28	0	WWP2	intronic	NA
RCC_T4--4	chr16:69970104	C	NA	26	0	26	67.500	7.522	0	0	0	26	0	WWP2	intronic	NA
RCC_T4--5	chr16:69970104	C	NA	41	0	41	67.293	6.827	0	0	0	41	0	WWP2	intronic	NA
RCC_T4--6	chr16:69970104	C	NA	30	0	30	66.267	3.552	0	0	0	30	0	WWP2	intronic	NA
RCC_T4--7	chr16:69970104	C	NA	41	0	41	66.878	5.745	0	0	0	41	0	WWP2	intronic	NA
RCC_T4--GL	chr16:69970104	C	NA	45	0	45	69.000	3.484	0	0	0	45	0	WWP2	intronic	NA
RCC_T4--1	chr16:72205022	A	G	103	0.039	42	68.881	3.664	4	66.250	1.500	42	4	PMFBP1	intronic	NA
RCC_T4--2	chr16:72205022	A	G	99	0.091	52	69.654	2.671	9	65.667	1.658	52	9	PMFBP1	intronic	NA
RCC_T4--3	chr16:72205022	A	G	109	0.046	55	66.982	6.751	5	65.400	1.517	55	5	PMFBP1	intronic	NA
RCC_T4--4	chr16:72205022	A	G	124	0.073	64	68.406	4.074	9	64.111	3.257	64	9	PMFBP1	intronic	NA
RCC_T4--5	chr16:72205022	A	G	83	0.096	42	67.952	6.477	8	65.750	2.659	42	8	PMFBP1	intronic	NA
RCC_T4--6	chr16:72205022	A	G	71	0.127	20	68.050	3.790	9	65.889	3.444	20	9	PMFBP1	intronic	NA
RCC_T4--7	chr16:72205022	A	G	106	0.047	63	68.556	4.107	5	64.600	3.578	63	5	PMFBP1	intronic	NA
RCC_T4--GL	chr16:72205022	A	NA	86	0	36	66.917	8.327	0	0	0	36	0	PMFBP1	intronic	NA
RCC_T4--1	chr16:83999428	A	C	36	0.083	33	61.030	10.809	3	39.000	6.557	33	3	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:83999428	A	C	56	0.143	48	62.021	8.976	8	37.250	4.652	48	8	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:83999428	A	NA	43	0	43	58.907	11.468	0	0	0	43	0	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:83999428	A	C	45	0.156	38	63.947	9.326	7	41.143	7.647	38	7	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:83999428	A	C	48	0.042	46	63.304	7.705	2	38.000	0.000	46	2	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:83999428	A	C	36	0.139	31	62.129	9.732	5	33.000	0.000	31	5	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:83999428	A	C	56	0.125	49	59.776	11.661	7	36.000	2.828	49	7	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:83999428	A	NA	37	0	37	57.730	10.107	0	0	0	37	0	OSGIN1	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:847696	T	NA	65	0	65	67.077	5.959	0	0	0	65	0	CHTF18	exonic	synonymous_SNV
RCC_T4--2	chr16:847696	T	NA	55	0	55	65.745	4.571	0	0	0	55	0	CHTF18	exonic	synonymous_SNV
RCC_T4--3	chr16:847696	T	C	56	0.125	48	66.729	6.307	7	62.000	4.865	48	7	CHTF18	exonic	synonymous_SNV
RCC_T4--4	chr16:847696	T	NA	60	0	60	64.550	8.313	0	0	0	60	0	CHTF18	exonic	synonymous_SNV
RCC_T4--5	chr16:847696	T	C	57	0.018	56	65.482	7.420	1	33.000	0.000	56	1	CHTF18	exonic	synonymous_SNV
RCC_T4--6	chr16:847696	T	NA	56	0	56	66.500	7.909	0	0	0	56	0	CHTF18	exonic	synonymous_SNV
RCC_T4--7	chr16:847696	T	NA	48	0	48	65.500	7.229	0	0	0	48	0	CHTF18	exonic	synonymous_SNV
RCC_T4--GL	chr16:847696	T	NA	40	0	40	67.025	6.829	0	0	0	40	0	CHTF18	exonic	synonymous_SNV
RCC_T4--1	chr16:86559231	G	NA	56	0	55	65.182	7.667	0	0	0	55	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--2	chr16:86559231	G	NA	49	0	49	65.735	6.457	0	0	0	49	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--3	chr16:86559231	G	NA	36	0	36	66.917	5.363	0	0	0	36	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--4	chr16:86559231	G	NA	40	0	40	63.900	7.441	0	0	0	40	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--5	chr16:86559231	G	NA	35	0	35	63.514	10.769	0	0	0	35	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--6	chr16:86559231	G	T	46	0.130	40	66.425	4.326	6	66.000	5.550	40	6	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--7	chr16:86559231	G	NA	49	0	48	65.167	10.104	0	0	0	48	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--GL	chr16:86559231	G	NA	44	0	44	65.455	8.679	0	0	0	44	0	FOXF1(dist=11161),MTHFSD(dist=4551)	intergenic	NA
RCC_T4--1	chr16:89650114	C	NA	41	0	41	65.683	5.415	0	0	0	41	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--2	chr16:89650114	C	NA	53	0	53	64.377	5.418	0	0	0	53	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--3	chr16:89650114	C	A	32	0.125	28	63.429	7.743	4	66.000	0.000	28	4	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--4	chr16:89650114	C	NA	34	0	34	63.382	8.330	0	0	0	34	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--5	chr16:89650114	C	A	36	0.028	35	65.800	4.632	1	38.000	0.000	35	1	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--6	chr16:89650114	C	NA	42	0	42	65.738	4.249	0	0	0	42	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--7	chr16:89650114	C	NA	41	0	41	61.171	10.642	0	0	0	41	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--GL	chr16:89650114	C	NA	40	0	40	65.400	6.380	0	0	0	40	0	CPNE7	exonic	nonsynonymous_SNV
RCC_T4--1	chr16:90130083	G	NA	143	0	142	67.120	6.410	0	0	0	142	0	PRDM7	exonic	stopgain_SNV
RCC_T4--2	chr16:90130083	G	NA	188	0	187	67.096	6.792	0	0	0	187	0	PRDM7	exonic	stopgain_SNV
RCC_T4--3	chr16:90130083	G	A	130	0.008	129	66.814	6.293	1	40.000	0.000	129	1	PRDM7	exonic	stopgain_SNV
RCC_T4--4	chr16:90130083	G	A	177	0.006	176	66.551	6.019	1	40.000	0.000	176	1	PRDM7	exonic	stopgain_SNV
RCC_T4--5	chr16:90130083	G	NA	162	0	162	67.586	5.271	0	0	0	162	0	PRDM7	exonic	stopgain_SNV
RCC_T4--6	chr16:90130083	G	A	158	0.386	97	67.773	6.417	61	65.869	6.781	97	61	PRDM7	exonic	stopgain_SNV
RCC_T4--7	chr16:90130083	G	NA	131	0	131	67.206	5.992	0	0	0	131	0	PRDM7	exonic	stopgain_SNV
RCC_T4--GL	chr16:90130083	G	NA	144	0	144	67.014	7.006	0	0	0	144	0	PRDM7	exonic	stopgain_SNV
RCC_T4--1	chr17:10427256	G	NA	64	0	64	67.906	3.615	0	0	0	64	0	MYH2	intronic	NA
RCC_T4--2	chr17:10427256	G	NA	52	0	52	68.231	2.935	0	0	0	52	0	MYH2	intronic	NA
RCC_T4--3	chr17:10427256	G	NA	38	0	38	67.342	4.698	0	0	0	38	0	MYH2	intronic	NA
RCC_T4--4	chr17:10427256	G	NA	67	0	67	67.836	3.983	0	0	0	67	0	MYH2	intronic	NA
RCC_T4--5	chr17:10427256	G	NA	60	0	60	67.767	3.367	0	0	0	60	0	MYH2	intronic	NA
RCC_T4--6	chr17:10427256	G	NA	64	0	64	67.891	2.521	0	0	0	64	0	MYH2	intronic	NA
RCC_T4--7	chr17:10427256	G	C	64	0.297	45	67.800	6.727	19	67.947	3.456	45	19	MYH2	intronic	NA
RCC_T4--GL	chr17:10427256	G	NA	60	0	60	67.150	5.544	0	0	0	60	0	MYH2	intronic	NA
RCC_T4--1	chr17:1581999	G	NA	121	0	121	67.587	5.275	0	0	0	121	0	PRPF8	intronic	NA
RCC_T4--2	chr17:1581999	G	NA	126	0	126	65.754	6.462	0	0	0	126	0	PRPF8	intronic	NA
RCC_T4--3	chr17:1581999	G	C	78	0.141	66	67.167	5.801	11	64.364	11.535	66	11	PRPF8	intronic	NA
RCC_T4--4	chr17:1581999	G	NA	91	0	91	64.989	8.546	0	0	0	91	0	PRPF8	intronic	NA
RCC_T4--5	chr17:1581999	G	NA	104	0	104	66.038	7.636	0	0	0	104	0	PRPF8	intronic	NA
RCC_T4--6	chr17:1581999	G	NA	111	0	111	66.541	7.135	0	0	0	111	0	PRPF8	intronic	NA
RCC_T4--7	chr17:1581999	G	NA	88	0	88	65.648	7.792	0	0	0	88	0	PRPF8	intronic	NA
RCC_T4--GL	chr17:1581999	G	NA	85	0	85	66.953	6.125	0	0	0	85	0	PRPF8	intronic	NA
RCC_T4--1	chr17:26687484	G	NA	60	0	59	66.051	6.436	0	0	0	59	0	TMEM199	intronic	NA
RCC_T4--2	chr17:26687484	G	NA	68	0	68	64.853	7.510	0	0	0	68	0	TMEM199	intronic	NA
RCC_T4--3	chr17:26687484	G	C	42	0.143	36	64.972	7.256	6	61.833	3.656	36	6	TMEM199	intronic	NA
RCC_T4--4	chr17:26687484	G	C	70	0.057	66	66.803	5.063	4	60.000	8.832	66	4	TMEM199	intronic	NA
RCC_T4--5	chr17:26687484	G	NA	66	0	65	67.046	5.891	0	0	0	65	0	TMEM199	intronic	NA
RCC_T4--6	chr17:26687484	G	C	72	0.056	68	65.985	7.827	4	64.000	1.414	68	4	TMEM199	intronic	NA
RCC_T4--7	chr17:26687484	G	C	78	0.077	72	66.583	6.295	6	63.333	1.966	72	6	TMEM199	intronic	NA
RCC_T4--GL	chr17:26687484	G	NA	59	0	58	67.983	4.216	0	0	0	58	0	TMEM199	intronic	NA
RCC_T4--1	chr17:38179589	G	NA	84	0	84	65.548	4.843	0	0	0	84	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:38179589	G	NA	45	0	45	64.378	6.972	0	0	0	45	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:38179589	G	NA	42	0	41	62.073	9.475	0	0	0	41	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:38179589	G	NA	42	0	41	66.098	6.674	0	0	0	41	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:38179589	G	NA	51	0	51	65.216	5.947	0	0	0	51	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:38179589	G	NA	64	0	64	63.531	7.471	0	0	0	64	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:38179589	G	A	42	0.119	37	65.541	6.358	5	59.600	15.159	37	5	MED24	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:38179589	G	NA	43	0	43	62.116	9.404	0	0	0	43	0	MED24	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:38556130	T	C	275	0.269	200	68.285	5.681	74	66.973	6.715	200	74	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:38556130	T	C	319	0.235	244	68.057	3.975	75	68.547	3.378	244	75	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:38556130	T	C	265	0.298	186	68.624	3.724	79	67.608	6.462	186	79	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:38556130	T	C	334	0.177	275	67.927	5.006	59	67.085	5.035	275	59	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:38556130	T	C	268	0.291	190	67.584	6.882	78	67.449	6.346	190	78	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:38556130	T	C	331	0.347	216	67.556	6.083	115	67.226	6.771	216	115	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:38556130	T	C	270	0.359	173	67.572	6.122	97	66.948	6.631	173	97	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:38556130	T	NA	250	0	250	68.532	4.395	0	0	0	250	0	TOP2A	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:38857517	C	T	76	0.224	59	66.831	4.140	17	67.824	3.844	59	17	KRT24	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:38857517	C	T	86	0.244	65	65.677	7.663	21	67.619	4.588	65	21	KRT24	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:38857517	C	T	84	0.286	59	65.119	7.894	24	66.417	7.095	59	24	KRT24	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:38857517	C	T	93	0.129	80	65.950	6.154	12	66.667	2.741	80	12	KRT24	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:38857517	C	T	80	0.150	68	66.103	6.111	12	64.750	9.137	68	12	KRT24	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:38857517	C	T	92	0.348	60	65.483	7.127	32	65.125	5.097	60	32	KRT24	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:38857517	C	T	87	0.391	53	66.038	7.195	34	66.912	5.276	53	34	KRT24	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:38857517	C	NA	80	0	80	67.062	6.237	0	0	0	80	0	KRT24	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:4448523	A	NA	39	0	39	57.128	11.943	0	0	0	39	0	MYBBP1A	intronic	NA
RCC_T4--2	chr17:4448523	A	C	44	0.091	40	52.975	12.650	4	39.500	6.028	40	4	MYBBP1A	intronic	NA
RCC_T4--3	chr17:4448523	A	C	35	0.086	30	55.000	11.730	3	43.667	15.948	30	3	MYBBP1A	intronic	NA
RCC_T4--4	chr17:4448523	A	C	38	0.026	37	57.243	10.481	1	43.000	0.000	37	1	MYBBP1A	intronic	NA
RCC_T4--5	chr17:4448523	A	C	36	0.056	33	58.333	11.485	2	34.500	2.121	33	2	MYBBP1A	intronic	NA
RCC_T4--6	chr17:4448523	A	C	35	0.200	28	57.714	11.323	7	34.714	1.604	28	7	MYBBP1A	intronic	NA
RCC_T4--7	chr17:4448523	A	C	34	0.029	33	55.515	11.919	1	51.000	0.000	33	1	MYBBP1A	intronic	NA
RCC_T4--GL	chr17:4448523	A	NA	38	0	38	59.763	9.966	0	0	0	38	0	MYBBP1A	intronic	NA
RCC_T4--1	chr17:45734212	T	C	78	0.090	34	67.206	6.109	7	63.143	4.562	34	7	KPNB1	intronic	NA
RCC_T4--2	chr17:45734212	T	C	88	0.045	58	67.276	4.712	4	63.750	1.258	58	4	KPNB1	intronic	NA
RCC_T4--3	chr17:45734212	T	C	62	0.081	28	68.607	2.629	5	62.200	6.419	28	5	KPNB1	intronic	NA
RCC_T4--4	chr17:45734212	T	C	87	0.046	52	68.115	3.434	4	62.750	3.594	52	4	KPNB1	intronic	NA
RCC_T4--5	chr17:45734212	T	C	74	0.081	38	68.947	4.324	6	64.833	3.710	38	6	KPNB1	intronic	NA
RCC_T4--6	chr17:45734212	T	C	90	0.044	48	68.292	3.307	4	51.500	12.503	48	4	KPNB1	intronic	NA
RCC_T4--7	chr17:45734212	T	C	80	0.050	45	68.644	3.248	4	64.250	1.708	45	4	KPNB1	intronic	NA
RCC_T4--GL	chr17:45734212	T	NA	62	0	42	69.095	3.192	0	0	0	42	0	KPNB1	intronic	NA
RCC_T4--1	chr17:48746657	T	G	63	0.032	59	57.458	12.201	2	33.000	0.000	59	2	ABCC3	intronic	NA
RCC_T4--2	chr17:48746657	T	G	80	0.050	76	57.237	11.642	4	36.000	2.000	76	4	ABCC3	intronic	NA
RCC_T4--3	chr17:48746657	T	G	53	0.189	43	57.465	10.742	10	37.200	3.553	43	10	ABCC3	intronic	NA
RCC_T4--4	chr17:48746657	T	G	54	0.074	50	58.780	11.929	4	38.000	5.033	50	4	ABCC3	intronic	NA
RCC_T4--5	chr17:48746657	T	G	73	0.096	66	58.182	11.408	7	36.857	4.706	66	7	ABCC3	intronic	NA
RCC_T4--6	chr17:48746657	T	G	52	0.077	47	57.021	11.663	4	36.500	2.517	47	4	ABCC3	intronic	NA
RCC_T4--7	chr17:48746657	T	G	49	0.041	47	59.191	11.267	2	37.000	0.000	47	2	ABCC3	intronic	NA
RCC_T4--GL	chr17:48746657	T	NA	39	0	39	62.231	8.872	0	0	0	39	0	ABCC3	intronic	NA
RCC_T4--1	chr17:4893005	G	T	80	0.212	63	67.508	6.537	17	67.118	4.540	63	17	INCA1	intronic	NA
RCC_T4--2	chr17:4893005	G	NA	69	0	69	68.420	5.160	0	0	0	69	0	INCA1	intronic	NA
RCC_T4--3	chr17:4893005	G	NA	59	0	59	67.661	5.800	0	0	0	59	0	INCA1	intronic	NA
RCC_T4--4	chr17:4893005	G	NA	79	0	79	67.785	5.108	0	0	0	79	0	INCA1	intronic	NA
RCC_T4--5	chr17:4893005	G	NA	70	0	70	68.443	4.844	0	0	0	70	0	INCA1	intronic	NA
RCC_T4--6	chr17:4893005	G	NA	70	0	70	67.286	6.899	0	0	0	70	0	INCA1	intronic	NA
RCC_T4--7	chr17:4893005	G	NA	72	0	72	66.444	7.168	0	0	0	72	0	INCA1	intronic	NA
RCC_T4--GL	chr17:4893005	G	NA	52	0	51	67.922	4.685	0	0	0	51	0	INCA1	intronic	NA
RCC_T4--1	chr17:53045592	A	C	39	0.051	37	58.946	12.627	2	36.000	0.000	37	2	COX11	intronic	NA
RCC_T4--2	chr17:53045592	A	C	48	0.062	44	59.977	11.025	3	35.000	1.732	44	3	COX11	intronic	NA
RCC_T4--3	chr17:53045592	A	C	41	0.122	36	61.278	11.052	5	36.200	4.087	36	5	COX11	intronic	NA
RCC_T4--4	chr17:53045592	A	C	37	0.189	30	59.900	13.074	7	36.571	3.047	30	7	COX11	intronic	NA
RCC_T4--5	chr17:53045592	A	C	49	0.082	45	57.044	11.432	4	33.750	1.500	45	4	COX11	intronic	NA
RCC_T4--6	chr17:53045592	A	C	61	0.164	51	59.137	12.977	10	36.500	5.380	51	10	COX11	intronic	NA
RCC_T4--7	chr17:53045592	A	C	50	0.020	48	60.521	11.020	1	33.000	0.000	48	1	COX11	intronic	NA
RCC_T4--GL	chr17:53045592	A	NA	43	0	43	60.744	10.273	0	0	0	43	0	COX11	intronic	NA
RCC_T4--1	chr17:67004089	C	NA	142	0	142	68.852	4.486	0	0	0	142	0	ABCA9	intronic	NA
RCC_T4--2	chr17:67004089	C	A	168	0.131	146	69.014	3.583	22	69.545	2.425	146	22	ABCA9	intronic	NA
RCC_T4--3	chr17:67004089	C	NA	137	0	136	69.162	4.805	0	0	0	136	0	ABCA9	intronic	NA
RCC_T4--4	chr17:67004089	C	NA	182	0	182	68.725	5.420	0	0	0	182	0	ABCA9	intronic	NA
RCC_T4--5	chr17:67004089	C	NA	169	0	169	68.757	5.470	0	0	0	169	0	ABCA9	intronic	NA
RCC_T4--6	chr17:67004089	C	NA	190	0	190	68.900	5.356	0	0	0	190	0	ABCA9	intronic	NA
RCC_T4--7	chr17:67004089	C	NA	169	0	169	67.781	6.206	0	0	0	169	0	ABCA9	intronic	NA
RCC_T4--GL	chr17:67004089	C	NA	153	0	153	68.824	4.221	0	0	0	153	0	ABCA9	intronic	NA
RCC_T4--1	chr17:67004156	A	NA	240	0	240	68.842	4.493	0	0	0	240	0	ABCA9	intronic	NA
RCC_T4--2	chr17:67004156	A	G	250	0.264	184	68.185	4.753	66	69.045	5.606	184	66	ABCA9	intronic	NA
RCC_T4--3	chr17:67004156	A	G	234	0.004	233	69.146	4.069	1	48.000	0.000	233	1	ABCA9	intronic	NA
RCC_T4--4	chr17:67004156	A	NA	264	0	263	69.084	3.921	0	0	0	263	0	ABCA9	intronic	NA
RCC_T4--5	chr17:67004156	A	NA	280	0	280	69.089	3.908	0	0	0	280	0	ABCA9	intronic	NA
RCC_T4--6	chr17:67004156	A	NA	298	0	298	68.926	4.205	0	0	0	298	0	ABCA9	intronic	NA
RCC_T4--7	chr17:67004156	A	NA	247	0	247	68.781	4.416	0	0	0	247	0	ABCA9	intronic	NA
RCC_T4--GL	chr17:67004156	A	NA	283	0	283	68.194	5.806	0	0	0	283	0	ABCA9	intronic	NA
RCC_T4--1	chr17:7127832	G	NA	49	0	49	67.898	3.216	0	0	0	49	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:7127832	G	NA	39	0	39	64.333	8.190	0	0	0	39	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:7127832	G	NA	34	0	34	66.471	6.716	0	0	0	34	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:7127832	G	NA	54	0	54	66.130	7.258	0	0	0	54	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:7127832	G	A	26	0.154	22	64.955	7.792	4	56.250	12.176	22	4	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:7127832	G	NA	39	0	39	65.615	7.843	0	0	0	39	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:7127832	G	NA	29	0	29	64.483	8.899	0	0	0	29	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:7127832	G	NA	35	0	35	65.057	8.781	0	0	0	35	0	ACADVL	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:72832686	C	NA	51	0	51	65.196	6.119	0	0	0	51	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:72832686	C	A	47	0.106	42	64.548	5.701	5	64.400	2.302	42	5	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:72832686	C	NA	40	0	40	64.200	9.302	0	0	0	40	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:72832686	C	NA	41	0	41	64.415	7.301	0	0	0	41	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:72832686	C	NA	44	0	44	61.682	11.216	0	0	0	44	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:72832686	C	NA	50	0	50	64.160	8.440	0	0	0	50	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:72832686	C	NA	52	0	52	66.423	6.381	0	0	0	52	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:72832686	C	NA	38	0	38	67.658	5.293	0	0	0	38	0	TMEM104	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:72923866	G	NA	29	0	29	61.690	11.049	0	0	0	29	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:72923866	G	A	54	0.037	50	62.740	10.059	2	60.000	8.485	50	2	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:72923866	G	NA	38	0	38	59.868	12.199	0	0	0	38	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:72923866	G	NA	37	0	37	59.757	12.205	0	0	0	37	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:72923866	G	A	50	0.120	44	62.477	9.835	6	53.667	12.517	44	6	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:72923866	G	NA	39	0	39	60.769	11.398	0	0	0	39	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:72923866	G	NA	41	0	41	63.976	9.809	0	0	0	41	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:72923866	G	NA	45	0	45	61.133	11.341	0	0	0	45	0	OTOP2	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:76445555	T	A	90	0.278	65	64.154	6.575	25	64.920	9.983	65	25	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--2	chr17:76445555	T	A	124	0.411	73	62.767	7.273	51	66.137	4.875	73	51	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--3	chr17:76445555	T	A	66	0.242	49	62.714	10.324	16	64.750	7.076	49	16	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--4	chr17:76445555	T	A	74	0.108	66	64.348	6.557	8	66.500	6.071	66	8	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--5	chr17:76445555	T	A	87	0.414	49	63.510	8.016	36	62.694	9.979	49	36	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--6	chr17:76445555	T	A	114	0.035	109	64.284	7.470	4	67.250	5.620	109	4	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--7	chr17:76445555	T	A	86	0.314	58	65.000	7.286	27	64.630	7.606	58	27	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--GL	chr17:76445555	T	NA	71	0	71	63.423	8.822	0	0	0	71	0	DNAH17	exonic	nonsynonymous_SNV
RCC_T4--1	chr17:7696391	C	A	119	0.126	104	65.221	4.672	15	63.400	7.872	104	15	DNAH2	exonic	synonymous_SNV
RCC_T4--2	chr17:7696391	C	NA	110	0	110	64.091	7.090	0	0	0	110	0	DNAH2	exonic	synonymous_SNV
RCC_T4--3	chr17:7696391	C	NA	116	0	116	64.284	5.540	0	0	0	116	0	DNAH2	exonic	synonymous_SNV
RCC_T4--4	chr17:7696391	C	NA	151	0	151	64.205	6.815	0	0	0	151	0	DNAH2	exonic	synonymous_SNV
RCC_T4--5	chr17:7696391	C	NA	165	0	165	64.194	6.205	0	0	0	165	0	DNAH2	exonic	synonymous_SNV
RCC_T4--6	chr17:7696391	C	A	131	0.015	129	65.364	5.747	2	39.500	2.121	129	2	DNAH2	exonic	synonymous_SNV
RCC_T4--7	chr17:7696391	C	NA	113	0	113	64.602	7.127	0	0	0	113	0	DNAH2	exonic	synonymous_SNV
RCC_T4--GL	chr17:7696391	C	NA	123	0	123	63.935	6.952	0	0	0	123	0	DNAH2	exonic	synonymous_SNV
RCC_T4--1	chr17:79637251	T	NA	42	0	42	66.810	4.925	0	0	0	42	0	CCDC137	intronic	NA
RCC_T4--2	chr17:79637251	T	NA	29	0	29	67.724	4.487	0	0	0	29	0	CCDC137	intronic	NA
RCC_T4--3	chr17:79637251	T	NA	25	0	24	65.500	10.807	0	0	0	24	0	CCDC137	intronic	NA
RCC_T4--4	chr17:79637251	T	NA	30	0	30	67.400	4.065	0	0	0	30	0	CCDC137	intronic	NA
RCC_T4--5	chr17:79637251	T	NA	32	0	32	62.812	12.220	0	0	0	32	0	CCDC137	intronic	NA
RCC_T4--6	chr17:79637251	T	NA	24	0	24	68.042	3.250	0	0	0	24	0	CCDC137	intronic	NA
RCC_T4--7	chr17:79637251	T	C	20	0.150	17	66.882	6.353	3	57.333	21.127	17	3	CCDC137	intronic	NA
RCC_T4--GL	chr17:79637251	T	NA	35	0	35	67.000	3.796	0	0	0	35	0	CCDC137	intronic	NA
RCC_T4--1	chr18:13072676	T	G	46	0.022	45	57.156	12.077	1	39.000	0.000	45	1	CEP192	intronic	NA
RCC_T4--2	chr18:13072676	T	G	56	0.036	54	61.185	10.159	2	35.000	2.828	54	2	CEP192	intronic	NA
RCC_T4--3	chr18:13072676	T	G	49	0.184	40	59.775	11.479	9	36.111	2.472	40	9	CEP192	intronic	NA
RCC_T4--4	chr18:13072676	T	G	77	0.065	72	57.639	11.694	5	37.400	0.894	72	5	CEP192	intronic	NA
RCC_T4--5	chr18:13072676	T	G	62	0.032	60	58.967	10.020	2	36.000	4.243	60	2	CEP192	intronic	NA
RCC_T4--6	chr18:13072676	T	G	56	0.089	50	59.780	10.383	5	37.800	1.095	50	5	CEP192	intronic	NA
RCC_T4--7	chr18:13072676	T	G	47	0.043	45	56.200	12.515	2	35.000	2.828	45	2	CEP192	intronic	NA
RCC_T4--GL	chr18:13072676	T	NA	61	0	61	61.984	9.012	0	0	0	61	0	CEP192	intronic	NA
RCC_T4--1	chr18:34191830	C	NA	28	0	28	69.286	2.106	0	0	0	28	0	FHOD3	intronic	NA
RCC_T4--2	chr18:34191830	C	NA	23	0	23	66.217	8.592	0	0	0	23	0	FHOD3	intronic	NA
RCC_T4--3	chr18:34191830	C	T	18	0.167	15	64.067	11.774	3	68.667	1.528	15	3	FHOD3	intronic	NA
RCC_T4--4	chr18:34191830	C	NA	19	0	19	68.211	4.541	0	0	0	19	0	FHOD3	intronic	NA
RCC_T4--5	chr18:34191830	C	NA	20	0	20	68.500	3.332	0	0	0	20	0	FHOD3	intronic	NA
RCC_T4--6	chr18:34191830	C	NA	15	0	15	67.133	6.128	0	0	0	15	0	FHOD3	intronic	NA
RCC_T4--7	chr18:34191830	C	NA	23	0	23	67.478	4.785	0	0	0	23	0	FHOD3	intronic	NA
RCC_T4--GL	chr18:34191830	C	NA	40	0	40	69.550	2.698	0	0	0	40	0	FHOD3	intronic	NA
RCC_T4--1	chr18:47796088	G	A	37	0.027	36	67.500	6.097	1	40.000	0.000	36	1	MBD1	exonic	nonsynonymous_SNV
RCC_T4--2	chr18:47796088	G	NA	39	0	39	64.744	7.524	0	0	0	39	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--3	chr18:47796088	G	NA	30	0	30	65.333	8.841	0	0	0	30	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--4	chr18:47796088	G	NA	56	0	55	63.982	8.214	0	0	0	55	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--5	chr18:47796088	G	NA	42	0	42	66.881	4.954	0	0	0	42	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--6	chr18:47796088	G	NA	42	0	42	64.833	7.711	0	0	0	42	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--7	chr18:47796088	G	A	39	0.128	34	63.824	9.100	5	64.000	3.162	34	5	MBD1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr18:47796088	G	NA	42	0	42	66.833	4.928	0	0	0	42	0	MBD1	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:84981870	T	NA	27	0	27	69.407	3.533	0	0	0	27	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--2	chr1:84981870	T	NA	24	0	24	68.083	3.488	0	0	0	24	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--3	chr1:84981870	T	NA	25	0	25	69.480	2.679	0	0	0	25	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--4	chr1:84981870	T	G	36	0.111	32	67.719	5.244	4	67.250	1.500	32	4	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--5	chr1:84981870	T	NA	30	0	30	69.267	3.016	0	0	0	30	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--6	chr1:84981870	T	NA	23	0	23	68.739	3.732	0	0	0	23	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--7	chr1:84981870	T	NA	31	0	31	69.677	3.341	0	0	0	31	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--GL	chr1:84981870	T	NA	39	0	39	68.692	3.155	0	0	0	39	0	GNG5(dist=9608),CTBS(dist=36934)	intergenic	NA
RCC_T4--1	chr18:51797526	C	NA	21	0	21	68.810	2.960	0	0	0	21	0	POLI	intronic	NA
RCC_T4--2	chr18:51797526	C	NA	33	0	33	68.788	5.314	0	0	0	33	0	POLI	intronic	NA
RCC_T4--3	chr18:51797526	C	G	23	0.043	21	66.095	7.987	1	68.000	0.000	21	1	POLI	intronic	NA
RCC_T4--4	chr18:51797526	C	G	23	0.130	20	68.350	4.246	3	65.000	3.000	20	3	POLI	intronic	NA
RCC_T4--5	chr18:51797526	C	G	28	0.214	22	67.727	3.869	6	65.000	2.000	22	6	POLI	intronic	NA
RCC_T4--6	chr18:51797526	C	G	39	0.077	36	68.806	3.232	3	62.667	2.082	36	3	POLI	intronic	NA
RCC_T4--7	chr18:51797526	C	G	30	0.100	27	68.296	5.947	3	66.000	3.464	27	3	POLI	intronic	NA
RCC_T4--GL	chr18:51797526	C	NA	42	0	42	68.976	3.565	0	0	0	42	0	POLI	intronic	NA
RCC_T4--1	chr18:56651668	A	NA	101	0	101	66.911	5.901	0	0	0	101	0	ZNF532	exonic	synonymous_SNV
RCC_T4--2	chr18:56651668	A	G	86	0.302	60	66.950	6.307	26	65.500	7.050	60	26	ZNF532	exonic	synonymous_SNV
RCC_T4--3	chr18:56651668	A	G	107	0.009	106	66.330	6.731	1	71.000	0.000	106	1	ZNF532	exonic	synonymous_SNV
RCC_T4--4	chr18:56651668	A	G	111	0.045	104	66.125	6.186	5	66.800	5.357	104	5	ZNF532	exonic	synonymous_SNV
RCC_T4--5	chr18:56651668	A	G	88	0.011	87	67.322	4.644	1	49.000	0.000	87	1	ZNF532	exonic	synonymous_SNV
RCC_T4--6	chr18:56651668	A	G	116	0.078	107	66.654	5.484	9	63.778	11.787	107	9	ZNF532	exonic	synonymous_SNV
RCC_T4--7	chr18:56651668	A	NA	112	0	112	65.580	7.822	0	0	0	112	0	ZNF532	exonic	synonymous_SNV
RCC_T4--GL	chr18:56651668	A	NA	74	0	74	67.054	4.786	0	0	0	74	0	ZNF532	exonic	synonymous_SNV
RCC_T4--1	chr19:10116383	G	NA	61	0	61	67.443	3.952	0	0	0	61	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:10116383	G	NA	41	0	41	64.756	8.811	0	0	0	41	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:10116383	G	NA	37	0	37	64.081	8.967	0	0	0	37	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:10116383	G	NA	53	0	53	66.340	5.118	0	0	0	53	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:10116383	G	NA	55	0	55	65.600	6.309	0	0	0	55	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:10116383	G	NA	43	0	43	66.140	7.683	0	0	0	43	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:10116383	G	A	24	0.167	20	65.850	7.583	4	63.250	3.594	20	4	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:10116383	G	NA	43	0	43	66.744	4.112	0	0	0	43	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:10335286	C	NA	45	0	45	66.778	6.484	0	0	0	45	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:10335286	C	NA	34	0	34	65.294	7.226	0	0	0	34	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:10335286	C	A	23	0.174	19	67.316	5.143	4	64.500	6.608	19	4	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:10335286	C	NA	41	0	41	64.049	7.723	0	0	0	41	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:10335286	C	NA	51	0	51	63.608	9.202	0	0	0	51	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:10335286	C	NA	57	0	57	64.018	11.017	0	0	0	57	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:10335286	C	NA	45	0	44	66.273	5.402	0	0	0	44	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:10335286	C	NA	33	0	33	65.818	9.231	0	0	0	33	0	S1PR2	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:13338195	G	A	57	0.053	54	64.926	6.486	3	63.667	2.309	54	3	CACNA1A	intronic	NA
RCC_T4--2	chr19:13338195	G	A	62	0.081	57	63.702	6.979	5	63.200	3.564	57	5	CACNA1A	intronic	NA
RCC_T4--3	chr19:13338195	G	A	45	0.067	42	63.976	7.876	3	66.000	0.000	42	3	CACNA1A	intronic	NA
RCC_T4--4	chr19:13338195	G	A	51	0.137	43	64.814	4.702	7	55.714	14.795	43	7	CACNA1A	intronic	NA
RCC_T4--5	chr19:13338195	G	A	49	0.122	42	65.262	5.171	6	48.667	17.259	42	6	CACNA1A	intronic	NA
RCC_T4--6	chr19:13338195	G	A	62	0.048	58	64.931	6.313	3	61.333	2.887	58	3	CACNA1A	intronic	NA
RCC_T4--7	chr19:13338195	G	A	47	0.021	46	66.087	4.526	1	66.000	0.000	46	1	CACNA1A	intronic	NA
RCC_T4--GL	chr19:13338195	G	NA	48	0	47	62.383	9.552	0	0	0	47	0	CACNA1A	intronic	NA
RCC_T4--1	chr19:15364958	C	NA	43	0	43	68.279	3.984	0	0	0	43	0	BRD4	intronic	NA
RCC_T4--2	chr19:15364958	C	A	39	0.154	33	67.879	3.789	6	63.833	4.446	33	6	BRD4	intronic	NA
RCC_T4--3	chr19:15364958	C	NA	30	0	30	63.767	10.398	0	0	0	30	0	BRD4	intronic	NA
RCC_T4--4	chr19:15364958	C	NA	33	0	33	66.333	7.274	0	0	0	33	0	BRD4	intronic	NA
RCC_T4--5	chr19:15364958	C	NA	41	0	41	65.512	9.548	0	0	0	41	0	BRD4	intronic	NA
RCC_T4--6	chr19:15364958	C	NA	51	0	51	64.529	10.451	0	0	0	51	0	BRD4	intronic	NA
RCC_T4--7	chr19:15364958	C	NA	41	0	41	64.561	9.765	0	0	0	41	0	BRD4	intronic	NA
RCC_T4--GL	chr19:15364958	C	NA	43	0	43	66.419	6.426	0	0	0	43	0	BRD4	intronic	NA
RCC_T4--1	chr19:15687363	C	A	32	0.031	31	65.452	5.977	1	38.000	0.000	31	1	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--2	chr19:15687363	C	A	28	0.143	24	66.875	5.698	4	65.750	4.924	24	4	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--3	chr19:15687363	C	NA	35	0	34	67.794	4.248	0	0	0	34	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--4	chr19:15687363	C	NA	33	0	33	64.818	5.752	0	0	0	33	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--5	chr19:15687363	C	NA	34	0	34	64.412	7.564	0	0	0	34	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--6	chr19:15687363	C	NA	20	0	20	65.650	5.733	0	0	0	20	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--7	chr19:15687363	C	NA	17	0	17	65.000	5.831	0	0	0	17	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--GL	chr19:15687363	C	NA	33	0	33	64.939	5.267	0	0	0	33	0	CYP4F22(dist=24235),CYP4F8(dist=38666)	intergenic	NA
RCC_T4--1	chr19:15728964	G	NA	203	0	203	67.823	3.946	0	0	0	203	0	CYP4F8	intronic	NA
RCC_T4--2	chr19:15728964	G	A	199	0.010	197	67.112	5.527	2	67.000	2.828	197	2	CYP4F8	intronic	NA
RCC_T4--3	chr19:15728964	G	NA	155	0	155	67.439	5.922	0	0	0	155	0	CYP4F8	intronic	NA
RCC_T4--4	chr19:15728964	G	NA	190	0	190	66.400	6.927	0	0	0	190	0	CYP4F8	intronic	NA
RCC_T4--5	chr19:15728964	G	NA	184	0	184	67.087	6.380	0	0	0	184	0	CYP4F8	intronic	NA
RCC_T4--6	chr19:15728964	G	A	223	0.004	222	66.928	5.178	1	66.000	0.000	222	1	CYP4F8	intronic	NA
RCC_T4--7	chr19:15728964	G	A	173	0.329	116	67.241	4.967	57	66.737	4.316	116	57	CYP4F8	intronic	NA
RCC_T4--GL	chr19:15728964	G	NA	174	0	174	66.684	6.497	0	0	0	174	0	CYP4F8	intronic	NA
RCC_T4--1	chr19:16032868	C	NA	98	0	98	65.694	7.180	0	0	0	98	0	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:16032868	C	NA	82	0	82	67.695	5.676	0	0	0	82	0	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:16032868	C	T	92	0.011	91	67.121	4.819	1	72.000	0.000	91	1	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:16032868	C	T	88	0.114	78	67.692	5.658	10	68.100	2.807	78	10	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:16032868	C	NA	93	0	93	66.613	7.650	0	0	0	93	0	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:16032868	C	T	80	0.013	79	68.228	5.554	1	72.000	0.000	79	1	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:16032868	C	NA	89	0	89	68.079	3.941	0	0	0	89	0	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:16032868	C	NA	104	0	104	66.558	7.999	0	0	0	104	0	CYP4F11	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:17449895	T	G	77	0.208	61	66.230	5.318	16	66.062	3.974	61	16	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:17449895	T	G	82	0.207	65	62.077	9.114	17	65.529	2.625	65	17	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:17449895	T	G	46	0.261	34	64.794	7.491	12	65.000	6.238	34	12	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:17449895	T	G	60	0.183	49	65.347	4.923	11	65.182	6.615	49	11	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:17449895	T	G	55	0.273	40	63.125	9.335	15	62.133	10.309	40	15	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:17449895	T	G	53	0.038	51	64.588	6.585	2	65.000	2.828	51	2	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:17449895	T	G	65	0.369	41	63.854	9.931	24	61.292	11.196	41	24	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:17449895	T	NA	50	0	50	64.400	7.228	0	0	0	50	0	GTPBP3	exonic	nonsynonymous_SNV
RCC_T4--1	chr1:91985681	T	C	125	0.008	124	68.298	5.737	1	33.000	0.000	124	1	CDC7	intronic	NA
RCC_T4--2	chr1:91985681	T	NA	165	0	165	67.424	5.393	0	0	0	165	0	CDC7	intronic	NA
RCC_T4--3	chr1:91985681	T	NA	132	0	132	68.508	5.038	0	0	0	132	0	CDC7	intronic	NA
RCC_T4--4	chr1:91985681	T	NA	150	0	150	67.307	5.485	0	0	0	150	0	CDC7	intronic	NA
RCC_T4--5	chr1:91985681	T	NA	160	0	160	68.537	4.828	0	0	0	160	0	CDC7	intronic	NA
RCC_T4--6	chr1:91985681	T	C	180	0.294	127	67.638	5.543	53	68.660	3.757	127	53	CDC7	intronic	NA
RCC_T4--7	chr1:91985681	T	NA	214	0	214	66.930	6.998	0	0	0	214	0	CDC7	intronic	NA
RCC_T4--GL	chr1:91985681	T	NA	180	0	180	68.144	5.401	0	0	0	180	0	CDC7	intronic	NA
RCC_T4--1	chr19:33302138	C	A	30	0.033	29	64.931	8.689	1	58.000	0.000	29	1	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--2	chr19:33302138	C	NA	29	0	29	66.448	5.295	0	0	0	29	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--3	chr19:33302138	C	NA	30	0	30	67.000	5.395	0	0	0	30	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--4	chr19:33302138	C	NA	46	0	46	65.957	7.441	0	0	0	46	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--5	chr19:33302138	C	A	29	0.138	25	61.560	11.439	4	55.500	15.588	25	4	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--6	chr19:33302138	C	NA	52	0	52	66.442	5.286	0	0	0	52	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--7	chr19:33302138	C	NA	21	0	21	63.524	11.116	0	0	0	21	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--GL	chr19:33302138	C	NA	33	0	33	66.576	4.430	0	0	0	33	0	TDRD12(dist=20424),SLC7A9(dist=19281)	intergenic	NA
RCC_T4--1	chr19:37974682	G	C	81	0.099	73	68.507	3.753	8	71.125	1.126	73	8	ZNF570	intronic	NA
RCC_T4--2	chr19:37974682	G	NA	54	0	54	67.704	5.016	0	0	0	54	0	ZNF570	intronic	NA
RCC_T4--3	chr19:37974682	G	NA	45	0	45	68.022	3.634	0	0	0	45	0	ZNF570	intronic	NA
RCC_T4--4	chr19:37974682	G	C	62	0.081	57	67.316	6.827	5	66.600	6.066	57	5	ZNF570	intronic	NA
RCC_T4--5	chr19:37974682	G	C	71	0.282	51	67.137	6.487	20	67.450	4.763	51	20	ZNF570	intronic	NA
RCC_T4--6	chr19:37974682	G	NA	78	0	78	68.308	4.470	0	0	0	78	0	ZNF570	intronic	NA
RCC_T4--7	chr19:37974682	G	NA	59	0	59	68.847	3.552	0	0	0	59	0	ZNF570	intronic	NA
RCC_T4--GL	chr19:37974682	G	NA	54	0	54	68.648	3.354	0	0	0	54	0	ZNF570	intronic	NA
RCC_T4--1	chr19:38876326	G	C	39	0.026	38	59.395	12.138	1	33.000	0.000	38	1	GGN	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:38876326	G	C	33	0.121	29	57.448	13.447	4	64.750	2.500	29	4	GGN	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:38876326	G	NA	33	0	33	59.485	12.255	0	0	0	33	0	GGN	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:38876326	G	NA	32	0	32	62.594	9.172	0	0	0	32	0	GGN	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:38876326	G	NA	41	0	41	61.024	10.389	0	0	0	41	0	GGN	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:38876326	G	NA	24	0	24	60.708	11.130	0	0	0	24	0	GGN	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:38876326	G	C	45	0.022	44	61.205	9.566	1	56.000	0.000	44	1	GGN	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:38876326	G	NA	39	0	39	61.154	10.532	0	0	0	39	0	GGN	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:38882839	C	NA	35	0	35	64.114	9.103	0	0	0	35	0	SPRED3	intronic	NA
RCC_T4--2	chr19:38882839	C	NA	36	0	36	64.000	6.150	0	0	0	36	0	SPRED3	intronic	NA
RCC_T4--3	chr19:38882839	C	NA	23	0	23	65.870	7.882	0	0	0	23	0	SPRED3	intronic	NA
RCC_T4--4	chr19:38882839	C	NA	31	0	31	62.839	10.146	0	0	0	31	0	SPRED3	intronic	NA
RCC_T4--5	chr19:38882839	C	NA	31	0	31	61.097	8.588	0	0	0	31	0	SPRED3	intronic	NA
RCC_T4--6	chr19:38882839	C	NA	26	0	26	65.385	5.247	0	0	0	26	0	SPRED3	intronic	NA
RCC_T4--7	chr19:38882839	C	A	28	0.143	24	60.917	10.685	4	59.750	4.646	24	4	SPRED3	intronic	NA
RCC_T4--GL	chr19:38882839	C	NA	34	0	34	59.941	10.993	0	0	0	34	0	SPRED3	intronic	NA
RCC_T4--1	chr19:3977816	C	NA	63	0	63	62.937	11.619	0	0	0	63	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--2	chr19:3977816	C	NA	67	0	67	66.597	8.770	0	0	0	67	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--3	chr19:3977816	C	NA	55	0	55	66.945	3.904	0	0	0	55	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--4	chr19:3977816	C	NA	48	0	48	66.646	5.522	0	0	0	48	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--5	chr19:3977816	C	NA	46	0	46	67.239	6.233	0	0	0	46	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--6	chr19:3977816	C	NA	64	0	64	65.547	5.989	0	0	0	64	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--7	chr19:3977816	C	A	55	0.145	47	65.085	7.940	8	60.250	6.364	47	8	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--GL	chr19:3977816	C	NA	75	0	75	66.987	6.583	0	0	0	75	0	EEF2(NM_001961:exon13:c.2067+1G>T)	splicing	NA
RCC_T4--1	chr19:40043816	C	NA	36	0	36	63.306	8.085	0	0	0	36	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--2	chr19:40043816	C	NA	15	0	15	67.600	5.501	0	0	0	15	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--3	chr19:40043816	C	NA	15	0	15	66.067	4.698	0	0	0	15	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--4	chr19:40043816	C	NA	29	0	29	65.448	6.051	0	0	0	29	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--5	chr19:40043816	C	NA	33	0	33	65.697	9.376	0	0	0	33	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--6	chr19:40043816	C	T	33	0.121	29	62.414	11.444	4	64.250	2.754	29	4	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--7	chr19:40043816	C	NA	12	0	12	66.333	4.438	0	0	0	12	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--GL	chr19:40043816	C	NA	34	0	34	66.235	4.432	0	0	0	34	0	EID2(dist=12978),LGALS13(dist=49353)	intergenic	NA
RCC_T4--1	chr19:40889824	T	G	53	0.113	47	60.617	13.310	6	35.500	4.806	47	6	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:40889824	T	G	42	0.167	35	64.857	7.799	7	36.000	3.606	35	7	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:40889824	T	G	37	0.081	34	63.235	7.836	3	34.333	2.309	34	3	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:40889824	T	G	47	0.128	41	63.610	11.681	6	34.167	1.835	41	6	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:40889824	T	G	35	0.057	33	60.667	12.447	2	33.000	0.000	33	2	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:40889824	T	G	49	0.224	38	62.421	10.630	11	34.636	3.202	38	11	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:40889824	T	G	27	0.074	25	61.240	12.094	2	33.000	0.000	25	2	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:40889824	T	NA	41	0	41	67.000	5.030	0	0	0	41	0	HIPK4	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:45303699	G	NA	42	0	42	66.310	8.742	0	0	0	42	0	CBLC	exonic	synonymous_SNV
RCC_T4--2	chr19:45303699	G	NA	38	0	38	64.342	6.244	0	0	0	38	0	CBLC	exonic	synonymous_SNV
RCC_T4--3	chr19:45303699	G	NA	31	0	31	66.032	7.960	0	0	0	31	0	CBLC	exonic	synonymous_SNV
RCC_T4--4	chr19:45303699	G	A	29	0.138	25	66.200	4.330	4	63.750	5.909	25	4	CBLC	exonic	synonymous_SNV
RCC_T4--5	chr19:45303699	G	NA	35	0	35	66.714	4.669	0	0	0	35	0	CBLC	exonic	synonymous_SNV
RCC_T4--6	chr19:45303699	G	NA	31	0	31	65.323	7.110	0	0	0	31	0	CBLC	exonic	synonymous_SNV
RCC_T4--7	chr19:45303699	G	NA	30	0	30	65.800	4.063	0	0	0	30	0	CBLC	exonic	synonymous_SNV
RCC_T4--GL	chr19:45303699	G	NA	36	0	36	65.222	7.986	0	0	0	36	0	CBLC	exonic	synonymous_SNV
RCC_T4--1	chr19:45873435	G	NA	68	0	68	65.397	6.405	0	0	0	68	0	ERCC2	exonic	stopgain_SNV
RCC_T4--2	chr19:45873435	G	NA	64	0	64	65.547	8.209	0	0	0	64	0	ERCC2	exonic	stopgain_SNV
RCC_T4--3	chr19:45873435	G	A	45	0.133	39	62.590	9.837	6	54.667	11.201	39	6	ERCC2	exonic	stopgain_SNV
RCC_T4--4	chr19:45873435	G	NA	45	0	45	65.089	7.513	0	0	0	45	0	ERCC2	exonic	stopgain_SNV
RCC_T4--5	chr19:45873435	G	NA	52	0	52	66.404	3.862	0	0	0	52	0	ERCC2	exonic	stopgain_SNV
RCC_T4--6	chr19:45873435	G	NA	55	0	55	67.727	4.130	0	0	0	55	0	ERCC2	exonic	stopgain_SNV
RCC_T4--7	chr19:45873435	G	NA	31	0	31	67.742	4.366	0	0	0	31	0	ERCC2	exonic	stopgain_SNV
RCC_T4--GL	chr19:45873435	G	NA	51	0	51	65.529	6.284	0	0	0	51	0	ERCC2	exonic	stopgain_SNV
RCC_T4--1	chr19:49545739	G	NA	40	0	40	67.450	3.170	0	0	0	40	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--2	chr19:49545739	G	NA	25	0	25	66.080	3.511	0	0	0	25	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--3	chr19:49545739	G	A	24	0.167	19	61.368	13.454	4	67.000	4.082	19	4	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--4	chr19:49545739	G	NA	21	0	21	64.000	5.301	0	0	0	21	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--5	chr19:49545739	G	NA	28	0	28	64.286	9.478	0	0	0	28	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--6	chr19:49545739	G	NA	25	0	25	65.160	8.430	0	0	0	25	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--7	chr19:49545739	G	NA	19	0	19	64.842	4.799	0	0	0	19	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--GL	chr19:49545739	G	NA	34	0	34	66.412	7.789	0	0	0	34	0	SNAR-G1(dist=5335),CGB5(dist=1363)	intergenic	NA
RCC_T4--1	chr19:50086752	G	NA	146	0	146	67.336	5.218	0	0	0	146	0	PRRG2	intronic	NA
RCC_T4--2	chr19:50086752	G	A	149	0.275	108	65.722	7.771	41	65.634	5.147	108	41	PRRG2	intronic	NA
RCC_T4--3	chr19:50086752	G	A	100	0.020	98	66.765	5.222	2	68.500	4.950	98	2	PRRG2	intronic	NA
RCC_T4--4	chr19:50086752	G	NA	156	0	156	66.109	6.714	0	0	0	156	0	PRRG2	intronic	NA
RCC_T4--5	chr19:50086752	G	A	163	0.012	161	67.081	6.912	2	70.000	0.000	161	2	PRRG2	intronic	NA
RCC_T4--6	chr19:50086752	G	A	140	0.064	131	67.588	5.288	9	59.222	12.235	131	9	PRRG2	intronic	NA
RCC_T4--7	chr19:50086752	G	NA	109	0	109	67.239	6.944	0	0	0	109	0	PRRG2	intronic	NA
RCC_T4--GL	chr19:50086752	G	NA	112	0	112	66.295	6.879	0	0	0	112	0	PRRG2	intronic	NA
RCC_T4--1	chr19:52033038	T	G	65	0.077	60	54.483	11.648	5	37.400	2.608	60	5	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:52033038	T	G	57	0.053	51	57.490	12.263	3	46.000	15.588	51	3	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:52033038	T	G	52	0.135	44	57.659	10.893	7	42.000	6.557	44	7	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:52033038	T	G	53	0.094	48	55.438	11.297	5	41.200	7.430	48	5	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:52033038	T	G	46	0.174	37	55.459	11.637	8	36.875	3.227	37	8	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:52033038	T	G	58	0.086	53	55.472	12.879	5	36.200	1.789	53	5	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:52033038	T	G	58	0.034	56	59.536	9.646	2	33.000	0.000	56	2	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:52033038	T	NA	46	0	46	57.870	12.128	0	0	0	46	0	SIGLEC6	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:54649720	A	NA	61	0	61	60.426	9.641	0	0	0	61	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--2	chr19:54649720	A	NA	44	0	44	60.023	8.836	0	0	0	44	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--3	chr19:54649720	A	C	34	0.029	33	62.152	8.765	1	43.000	0.000	33	1	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--4	chr19:54649720	A	NA	46	0	46	60.565	7.647	0	0	0	46	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--5	chr19:54649720	A	NA	35	0	35	61.171	10.706	0	0	0	35	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--6	chr19:54649720	A	C	33	0.182	27	58.741	11.970	6	34.833	2.137	27	6	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--7	chr19:54649720	A	NA	44	0	44	62.682	8.996	0	0	0	44	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr19:54649720	A	NA	43	0	43	63.535	9.054	0	0	0	43	0	CNOT3	exonic	nonsynonymous_SNV
RCC_T4--1	chr19:57986520	G	C	167	0.012	165	69.055	4.692	2	41.000	0.000	165	2	ZNF772	intronic	NA
RCC_T4--2	chr19:57986520	G	C	185	0.276	134	68.619	5.334	51	67.608	5.496	134	51	ZNF772	intronic	NA
RCC_T4--3	chr19:57986520	G	NA	146	0	146	68.637	4.805	0	0	0	146	0	ZNF772	intronic	NA
RCC_T4--4	chr19:57986520	G	C	178	0.011	175	68.697	4.301	2	58.500	7.778	175	2	ZNF772	intronic	NA
RCC_T4--5	chr19:57986520	G	C	179	0.022	175	68.949	4.076	4	70.500	1.732	175	4	ZNF772	intronic	NA
RCC_T4--6	chr19:57986520	G	C	235	0.034	227	68.357	4.336	8	64.750	10.767	227	8	ZNF772	intronic	NA
RCC_T4--7	chr19:57986520	G	NA	167	0	166	68.578	5.194	0	0	0	166	0	ZNF772	intronic	NA
RCC_T4--GL	chr19:57986520	G	NA	134	0	134	68.910	4.967	0	0	0	134	0	ZNF772	intronic	NA
RCC_T4--1	chr19:58718494	A	NA	41	0	41	67.610	4.392	0	0	0	41	0	ZNF274	exonic	unknown
RCC_T4--2	chr19:58718494	A	NA	37	0	37	66.676	4.773	0	0	0	37	0	ZNF274	exonic	unknown
RCC_T4--3	chr19:58718494	A	NA	22	0	22	68.045	3.539	0	0	0	22	0	ZNF274	exonic	unknown
RCC_T4--4	chr19:58718494	A	NA	39	0	39	65.744	6.687	0	0	0	39	0	ZNF274	exonic	unknown
RCC_T4--5	chr19:58718494	A	NA	35	0	35	66.029	8.230	0	0	0	35	0	ZNF274	exonic	unknown
RCC_T4--6	chr19:58718494	A	G	33	0.121	29	65.000	7.382	4	67.750	4.349	29	4	ZNF274	exonic	unknown
RCC_T4--7	chr19:58718494	A	NA	25	0	25	64.600	8.679	0	0	0	25	0	ZNF274	exonic	unknown
RCC_T4--GL	chr19:58718494	A	NA	34	0	34	66.824	6.312	0	0	0	34	0	ZNF274	exonic	unknown
RCC_T4--1	chr19:6712322	G	NA	50	0	50	65.500	6.202	0	0	0	50	0	C3	exonic	synonymous_SNV
RCC_T4--2	chr19:6712322	G	A	40	0.025	39	64.615	7.601	1	61.000	0.000	39	1	C3	exonic	synonymous_SNV
RCC_T4--3	chr19:6712322	G	NA	42	0	42	64.881	7.834	0	0	0	42	0	C3	exonic	synonymous_SNV
RCC_T4--4	chr19:6712322	G	NA	47	0	46	65.391	6.574	0	0	0	46	0	C3	exonic	synonymous_SNV
RCC_T4--5	chr19:6712322	G	NA	45	0	45	66.867	6.525	0	0	0	45	0	C3	exonic	synonymous_SNV
RCC_T4--6	chr19:6712322	G	NA	39	0	39	65.564	5.674	0	0	0	39	0	C3	exonic	synonymous_SNV
RCC_T4--7	chr19:6712322	G	A	43	0.116	37	64.351	10.160	5	66.800	1.095	37	5	C3	exonic	synonymous_SNV
RCC_T4--GL	chr19:6712322	G	NA	39	0	39	65.205	8.224	0	0	0	39	0	C3	exonic	synonymous_SNV
RCC_T4--1	chr20:24940415	A	C	58	0.034	56	51.839	10.673	2	45.000	0.000	56	2	CST7	UTR3	NA
RCC_T4--2	chr20:24940415	A	C	37	0.162	31	51.516	11.521	6	36.333	1.966	31	6	CST7	UTR3	NA
RCC_T4--3	chr20:24940415	A	C	47	0.128	41	50.146	9.838	6	37.167	0.753	41	6	CST7	UTR3	NA
RCC_T4--4	chr20:24940415	A	C	60	0.183	45	48.556	9.741	11	39.818	7.718	45	11	CST7	UTR3	NA
RCC_T4--5	chr20:24940415	A	C	38	0.105	34	50.971	12.323	4	33.750	1.500	34	4	CST7	UTR3	NA
RCC_T4--6	chr20:24940415	A	C	47	0.085	42	48.952	9.487	4	36.250	0.500	42	4	CST7	UTR3	NA
RCC_T4--7	chr20:24940415	A	C	52	0.058	47	51.979	10.349	3	35.333	2.082	47	3	CST7	UTR3	NA
RCC_T4--GL	chr20:24940415	A	NA	37	0	37	51.811	9.073	0	0	0	37	0	CST7	UTR3	NA
RCC_T4--1	chr20:31473256	C	NA	52	0	52	65.519	6.479	0	0	0	52	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--2	chr20:31473256	C	A	37	0.108	33	65.303	7.728	4	61.750	4.425	33	4	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--3	chr20:31473256	C	NA	34	0	34	62.647	8.998	0	0	0	34	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--4	chr20:31473256	C	NA	32	0	32	66.250	4.135	0	0	0	32	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--5	chr20:31473256	C	NA	33	0	33	63.303	8.956	0	0	0	33	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--6	chr20:31473256	C	A	41	0.024	40	65.250	7.203	1	33.000	0.000	40	1	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--7	chr20:31473256	C	NA	30	0	30	62.700	7.553	0	0	0	30	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--GL	chr20:31473256	C	NA	40	0	40	66.125	5.273	0	0	0	40	0	MAPRE1(dist=35045),SUN5(dist=98325)	intergenic	NA
RCC_T4--1	chr20:31937882	G	A	52	0.019	51	60.020	13.643	1	61.000	0.000	51	1	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--2	chr20:31937882	G	A	39	0.154	33	59.970	14.546	6	63.333	4.844	33	6	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--3	chr20:31937882	G	NA	34	0	34	58.382	13.722	0	0	0	34	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--4	chr20:31937882	G	NA	35	0	35	60.971	12.548	0	0	0	35	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--5	chr20:31937882	G	NA	62	0	62	58.774	13.049	0	0	0	62	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--6	chr20:31937882	G	NA	42	0	42	55.571	16.467	0	0	0	42	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--7	chr20:31937882	G	NA	29	0	29	59.345	14.087	0	0	0	29	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--GL	chr20:31937882	G	NA	46	0	46	60.152	12.390	0	0	0	46	0	BPIFB1(dist=40198),CDK5RAP1(dist=8763)	intergenic	NA
RCC_T4--1	chr20:32264950	T	G	41	0.049	38	56.526	11.879	2	42.500	4.950	38	2	E2F1	exonic	nonsynonymous_SNV
RCC_T4--2	chr20:32264950	T	G	27	0.222	21	53.619	10.675	6	42.333	8.359	21	6	E2F1	exonic	nonsynonymous_SNV
RCC_T4--3	chr20:32264950	T	G	24	0.042	22	52.591	11.665	1	39.000	0.000	22	1	E2F1	exonic	nonsynonymous_SNV
RCC_T4--4	chr20:32264950	T	G	34	0.147	29	55.966	11.040	5	35.800	2.683	29	5	E2F1	exonic	nonsynonymous_SNV
RCC_T4--5	chr20:32264950	T	G	38	0.158	32	54.906	10.786	6	35.667	3.011	32	6	E2F1	exonic	nonsynonymous_SNV
RCC_T4--6	chr20:32264950	T	G	34	0.147	29	56.897	11.226	5	36.200	3.033	29	5	E2F1	exonic	nonsynonymous_SNV
RCC_T4--7	chr20:32264950	T	G	40	0.025	39	57.154	11.146	1	33.000	0.000	39	1	E2F1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr20:32264950	T	NA	39	0	37	56.054	11.282	0	0	0	37	0	E2F1	exonic	nonsynonymous_SNV
RCC_T4--1	chr20:44053232	A	G	48	0.229	37	66.135	4.750	11	61.818	12.082	37	11	PIGT	intronic	NA
RCC_T4--2	chr20:44053232	A	G	44	0.273	32	62.812	10.275	12	69.667	2.270	32	12	PIGT	intronic	NA
RCC_T4--3	chr20:44053232	A	G	50	0.400	30	64.033	6.795	20	64.450	7.119	30	20	PIGT	intronic	NA
RCC_T4--4	chr20:44053232	A	G	41	0.268	29	61.897	8.143	11	66.273	2.867	29	11	PIGT	intronic	NA
RCC_T4--5	chr20:44053232	A	G	53	0.415	31	62.710	8.486	22	66.273	5.479	31	22	PIGT	intronic	NA
RCC_T4--6	chr20:44053232	A	G	43	0.442	24	62.917	8.667	19	67.579	3.595	24	19	PIGT	intronic	NA
RCC_T4--7	chr20:44053232	A	G	41	0.390	25	65.000	6.364	16	65.375	4.485	25	16	PIGT	intronic	NA
RCC_T4--GL	chr20:44053232	A	NA	41	0	41	66.439	3.815	0	0	0	41	0	PIGT	intronic	NA
RCC_T4--1	chr20:453076	A	C	31	0.097	28	58.750	12.498	3	37.333	0.577	28	3	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--2	chr20:453076	A	C	33	0.182	27	55.815	13.565	6	38.667	5.680	27	6	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--3	chr20:453076	A	C	34	0.176	28	60.036	10.437	6	42.333	6.055	28	6	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--4	chr20:453076	A	C	33	0.212	26	62.731	8.812	7	36.286	4.645	26	7	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--5	chr20:453076	A	C	32	0.094	29	57.828	12.163	3	34.333	2.309	29	3	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--6	chr20:453076	A	C	40	0.225	31	58.032	10.756	9	37.333	5.148	31	9	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--7	chr20:453076	A	C	27	0.222	21	53.000	13.971	6	36.333	1.633	21	6	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--GL	chr20:453076	A	NA	37	0	37	58.568	11.172	0	0	0	37	0	TBC1D20(dist=9889),CSNK2A1(dist=10262)	intergenic	NA
RCC_T4--1	chr20:47585863	C	NA	75	0	75	67.493	6.159	0	0	0	75	0	ARFGEF2	intronic	NA
RCC_T4--2	chr20:47585863	C	NA	56	0	55	67.091	4.881	0	0	0	55	0	ARFGEF2	intronic	NA
RCC_T4--3	chr20:47585863	C	NA	72	0	72	65.931	6.729	0	0	0	72	0	ARFGEF2	intronic	NA
RCC_T4--4	chr20:47585863	C	A	74	0.108	66	68.015	3.399	8	68.125	2.532	66	8	ARFGEF2	intronic	NA
RCC_T4--5	chr20:47585863	C	NA	74	0	74	66.824	5.298	0	0	0	74	0	ARFGEF2	intronic	NA
RCC_T4--6	chr20:47585863	C	NA	65	0	65	65.369	9.347	0	0	0	65	0	ARFGEF2	intronic	NA
RCC_T4--7	chr20:47585863	C	A	78	0.026	75	66.667	5.921	2	61.500	3.536	75	2	ARFGEF2	intronic	NA
RCC_T4--GL	chr20:47585863	C	NA	68	0	68	64.412	8.189	0	0	0	68	0	ARFGEF2	intronic	NA
RCC_T4--1	chr20:48301103	A	NA	68	0	37	66.595	3.876	0	0	0	37	0	B4GALT5	intronic	NA
RCC_T4--2	chr20:48301103	A	G	56	0.018	38	66.053	6.645	1	65.000	0.000	38	1	B4GALT5	intronic	NA
RCC_T4--3	chr20:48301103	A	G	47	0.106	21	65.857	7.206	5	64.600	1.673	21	5	B4GALT5	intronic	NA
RCC_T4--4	chr20:48301103	A	NA	72	0	38	65.500	8.203	0	0	0	38	0	B4GALT5	intronic	NA
RCC_T4--5	chr20:48301103	A	G	76	0.026	41	65.659	5.986	2	63.500	2.121	41	2	B4GALT5	intronic	NA
RCC_T4--6	chr20:48301103	A	G	65	0.015	46	66.935	4.171	1	66.000	0.000	46	1	B4GALT5	intronic	NA
RCC_T4--7	chr20:48301103	A	NA	32	0	27	66.222	3.776	0	0	0	27	0	B4GALT5	intronic	NA
RCC_T4--GL	chr20:48301103	A	NA	57	0	35	67.057	3.539	0	0	0	35	0	B4GALT5	intronic	NA
RCC_T4--1	chr20:56886139	T	G	215	0.005	214	65.486	7.464	1	33.000	0.000	214	1	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--2	chr20:56886139	T	G	217	0.009	215	64.172	7.672	2	35.500	3.536	215	2	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--3	chr20:56886139	T	G	177	0.006	175	65.200	6.951	1	38.000	0.000	175	1	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--4	chr20:56886139	T	NA	241	0	241	65.593	6.481	0	0	0	241	0	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--5	chr20:56886139	T	NA	209	0	209	65.153	7.444	0	0	0	209	0	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--6	chr20:56886139	T	NA	231	0	231	66.177	6.562	0	0	0	231	0	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--7	chr20:56886139	T	G	194	0.144	166	65.530	7.314	28	67.143	5.873	166	28	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--GL	chr20:56886139	T	NA	182	0	182	65.231	6.751	0	0	0	182	0	RAB22A	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:101611798	T	NA	58	0	58	68.569	4.239	0	0	0	58	0	NPAS2	intronic	NA
RCC_T4--2	chr2:101611798	T	C	44	0.136	38	66.289	7.330	6	65.333	1.633	38	6	NPAS2	intronic	NA
RCC_T4--3	chr2:101611798	T	NA	47	0	47	67.979	3.668	0	0	0	47	0	NPAS2	intronic	NA
RCC_T4--4	chr2:101611798	T	NA	41	0	41	67.829	4.505	0	0	0	41	0	NPAS2	intronic	NA
RCC_T4--5	chr2:101611798	T	NA	59	0	59	67.661	5.683	0	0	0	59	0	NPAS2	intronic	NA
RCC_T4--6	chr2:101611798	T	NA	53	0	53	66.094	7.744	0	0	0	53	0	NPAS2	intronic	NA
RCC_T4--7	chr2:101611798	T	NA	47	0	47	67.170	6.267	0	0	0	47	0	NPAS2	intronic	NA
RCC_T4--GL	chr2:101611798	T	NA	39	0	39	68.051	7.104	0	0	0	39	0	NPAS2	intronic	NA
RCC_T4--1	chr2:10807394	C	A	120	0.267	88	68.693	4.572	32	68.812	2.833	88	32	NOL10	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:10807394	C	A	158	0.247	119	67.714	5.557	39	68.769	3.528	119	39	NOL10	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:10807394	C	A	114	0.298	80	67.513	6.906	34	68.971	4.751	80	34	NOL10	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:10807394	C	A	166	0.157	139	67.058	6.289	26	68.231	3.680	139	26	NOL10	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:10807394	C	A	185	0.249	139	67.439	5.526	46	68.870	3.673	139	46	NOL10	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:10807394	C	A	158	0.348	103	68.097	6.148	55	68.691	6.070	103	55	NOL10	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:10807394	C	A	128	0.344	84	68.940	4.860	44	68.932	3.480	84	44	NOL10	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:10807394	C	NA	159	0	159	68.346	5.199	0	0	0	159	0	NOL10	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:10987670	G	T	120	0.250	90	67.689	5.739	30	62.500	7.075	90	30	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--2	chr2:10987670	G	T	107	0.280	76	66.895	7.072	30	63.233	5.817	76	30	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--3	chr2:10987670	G	T	86	0.233	65	67.138	5.477	20	63.700	5.079	65	20	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--4	chr2:10987670	G	T	106	0.123	93	66.645	6.700	13	62.462	7.881	93	13	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--5	chr2:10987670	G	T	130	0.331	86	65.988	7.519	43	63.814	6.235	86	43	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--6	chr2:10987670	G	T	105	0.314	72	66.861	7.202	33	62.606	7.866	72	33	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--7	chr2:10987670	G	T	116	0.250	86	67.826	5.896	29	61.138	7.818	86	29	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--GL	chr2:10987670	G	NA	117	0	117	67.026	6.657	0	0	0	117	0	PDIA6(dist=9567),LOC101929733(dist=30723)	intergenic	NA
RCC_T4--1	chr2:11053249	T	G	38	0.026	37	59.514	11.007	1	33.000	0.000	37	1	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:11053249	T	G	65	0.077	60	58.433	10.120	5	38.800	5.070	60	5	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:11053249	T	G	63	0.095	57	57.158	11.071	6	33.833	2.041	57	6	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:11053249	T	G	37	0.054	35	57.029	10.405	2	35.500	3.536	35	2	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:11053249	T	G	44	0.068	41	59.073	11.720	3	38.333	0.577	41	3	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:11053249	T	NA	54	0	54	59.648	9.018	0	0	0	54	0	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:11053249	T	G	44	0.159	36	55.417	12.523	7	41.429	4.276	36	7	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:11053249	T	NA	59	0	59	60.525	10.011	0	0	0	59	0	KCNF1	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:113074061	G	NA	191	0	191	68.838	4.378	0	0	0	191	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--2	chr2:113074061	G	NA	284	0	284	68.757	4.033	0	0	0	284	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--3	chr2:113074061	G	NA	189	0	189	68.815	4.433	0	0	0	189	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--4	chr2:113074061	G	NA	230	0	230	68.896	4.528	0	0	0	230	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--5	chr2:113074061	G	T	261	0.004	260	68.188	5.944	1	38.000	0.000	260	1	ZC3H6	exonic	synonymous_SNV
RCC_T4--6	chr2:113074061	G	T	225	0.258	166	68.404	5.228	58	65.466	6.114	166	58	ZC3H6	exonic	synonymous_SNV
RCC_T4--7	chr2:113074061	G	NA	264	0	264	68.182	4.762	0	0	0	264	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--GL	chr2:113074061	G	NA	262	0	262	68.427	6.249	0	0	0	262	0	ZC3H6	exonic	synonymous_SNV
RCC_T4--1	chr21:15284071	C	A	41	0.244	31	70.645	1.889	10	68.600	4.377	31	10	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--2	chr21:15284071	C	A	73	0.288	52	69.519	4.917	21	70.000	3.317	52	21	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--3	chr21:15284071	C	A	70	0.171	58	68.966	4.172	12	66.750	10.980	58	12	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--4	chr21:15284071	C	A	78	0.128	68	70.000	2.580	10	70.500	1.900	68	10	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--5	chr21:15284071	C	A	70	0.257	52	69.269	5.858	18	70.167	1.823	52	18	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--6	chr21:15284071	C	A	74	0.365	47	69.702	3.706	27	69.444	4.079	47	27	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--7	chr21:15284071	C	A	71	0.268	52	70.038	2.957	19	66.053	8.816	52	19	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--GL	chr21:15284071	C	NA	73	0	73	68.863	5.574	0	0	0	73	0	C21orf15(dist=63386),ANKRD20A11P(dist=32025)	intergenic	NA
RCC_T4--1	chr2:128937363	A	T	163	0.209	129	68.791	4.710	34	69.029	3.754	129	34	UGGT1	exonic	synonymous_SNV
RCC_T4--2	chr2:128937363	A	T	228	0.298	160	68.606	4.812	68	68.132	4.153	160	68	UGGT1	exonic	synonymous_SNV
RCC_T4--3	chr2:128937363	A	T	139	0.331	92	68.576	3.763	46	68.457	6.292	92	46	UGGT1	exonic	synonymous_SNV
RCC_T4--4	chr2:128937363	A	T	219	0.224	170	69.271	3.614	49	69.061	2.520	170	49	UGGT1	exonic	synonymous_SNV
RCC_T4--5	chr2:128937363	A	T	205	0.327	138	68.819	4.076	67	68.179	4.519	138	67	UGGT1	exonic	synonymous_SNV
RCC_T4--6	chr2:128937363	A	T	200	0.405	119	68.050	6.010	81	69.556	3.511	119	81	UGGT1	exonic	synonymous_SNV
RCC_T4--7	chr2:128937363	A	T	192	0.365	122	68.779	5.151	70	68.614	2.850	122	70	UGGT1	exonic	synonymous_SNV
RCC_T4--GL	chr2:128937363	A	NA	174	0	174	68.489	5.010	0	0	0	174	0	UGGT1	exonic	synonymous_SNV
RCC_T4--1	chr21:34893325	G	NA	207	0	207	68.411	5.311	0	0	0	207	0	GART	intronic	NA
RCC_T4--2	chr21:34893325	G	A	192	0.203	153	68.516	5.293	39	68.256	5.848	153	39	GART	intronic	NA
RCC_T4--3	chr21:34893325	G	NA	169	0	168	67.899	5.431	0	0	0	168	0	GART	intronic	NA
RCC_T4--4	chr21:34893325	G	NA	169	0	168	68.185	4.287	0	0	0	168	0	GART	intronic	NA
RCC_T4--5	chr21:34893325	G	NA	205	0	204	68.544	4.205	0	0	0	204	0	GART	intronic	NA
RCC_T4--6	chr21:34893325	G	NA	231	0	231	68.468	4.655	0	0	0	231	0	GART	intronic	NA
RCC_T4--7	chr21:34893325	G	NA	173	0	173	67.960	6.243	0	0	0	173	0	GART	intronic	NA
RCC_T4--GL	chr21:34893325	G	NA	177	0	177	68.220	5.625	0	0	0	177	0	GART	intronic	NA
RCC_T4--1	chr21:37734382	G	NA	53	0	53	69.321	3.412	0	0	0	53	0	MORC3	intronic	NA
RCC_T4--2	chr21:37734382	G	A	64	0.234	49	68.327	4.038	15	69.067	3.863	49	15	MORC3	intronic	NA
RCC_T4--3	chr21:37734382	G	NA	45	0	45	68.733	4.878	0	0	0	45	0	MORC3	intronic	NA
RCC_T4--4	chr21:37734382	G	NA	50	0	50	68.940	4.349	0	0	0	50	0	MORC3	intronic	NA
RCC_T4--5	chr21:37734382	G	NA	47	0	47	68.830	4.177	0	0	0	47	0	MORC3	intronic	NA
RCC_T4--6	chr21:37734382	G	NA	54	0	54	68.833	4.526	0	0	0	54	0	MORC3	intronic	NA
RCC_T4--7	chr21:37734382	G	NA	40	0	40	68.525	5.552	0	0	0	40	0	MORC3	intronic	NA
RCC_T4--GL	chr21:37734382	G	NA	61	0	61	69.082	4.084	0	0	0	61	0	MORC3	intronic	NA
RCC_T4--1	chr21:40597215	A	G	60	0.050	57	68.561	3.145	3	54.333	18.475	57	3	BRWD1	intronic	NA
RCC_T4--2	chr21:40597215	A	G	54	0.093	49	68.857	3.342	5	62.400	4.506	49	5	BRWD1	intronic	NA
RCC_T4--3	chr21:40597215	A	G	39	0.179	32	68.344	3.327	7	65.857	1.864	32	7	BRWD1	intronic	NA
RCC_T4--4	chr21:40597215	A	NA	55	0	54	69.352	5.125	0	0	0	54	0	BRWD1	intronic	NA
RCC_T4--5	chr21:40597215	A	G	65	0.092	59	68.305	4.721	6	63.833	2.563	59	6	BRWD1	intronic	NA
RCC_T4--6	chr21:40597215	A	G	63	0.048	60	69.233	3.775	3	56.333	8.083	60	3	BRWD1	intronic	NA
RCC_T4--7	chr21:40597215	A	G	74	0.095	67	69.284	3.014	7	62.714	4.348	67	7	BRWD1	intronic	NA
RCC_T4--GL	chr21:40597215	A	NA	54	0	54	69.370	3.287	0	0	0	54	0	BRWD1	intronic	NA
RCC_T4--1	chr21:47693321	C	NA	44	0	44	64.364	8.970	0	0	0	44	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--2	chr21:47693321	C	NA	56	0	56	63.500	9.408	0	0	0	56	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--3	chr21:47693321	C	T	36	0.111	32	66.406	4.110	4	64.000	4.761	32	4	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--4	chr21:47693321	C	NA	51	0	51	65.216	7.465	0	0	0	51	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--5	chr21:47693321	C	NA	27	0	27	63.926	8.783	0	0	0	27	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--6	chr21:47693321	C	T	38	0.026	37	64.730	8.016	1	62.000	0.000	37	1	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--7	chr21:47693321	C	NA	47	0	47	65.787	6.827	0	0	0	47	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--GL	chr21:47693321	C	NA	39	0	39	66.513	4.605	0	0	0	39	0	MCM3AP	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:152319585	C	NA	173	0	172	67.959	5.031	0	0	0	172	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:152319585	C	NA	198	0	198	67.394	5.837	0	0	0	198	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:152319585	C	T	140	0.007	138	67.507	6.087	1	68.000	0.000	138	1	RIF1	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:152319585	C	NA	192	0	192	68.219	4.512	0	0	0	192	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:152319585	C	NA	179	0	179	68.101	4.764	0	0	0	179	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:152319585	C	T	231	0.346	151	68.185	4.975	80	68.862	4.354	151	80	RIF1	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:152319585	C	NA	149	0	149	68.168	4.202	0	0	0	149	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:152319585	C	NA	170	0	170	67.547	6.071	0	0	0	170	0	RIF1	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:160053262	G	NA	54	0	54	66.833	3.284	0	0	0	54	0	TANC1	exonic	synonymous_SNV
RCC_T4--2	chr2:160053262	G	A	48	0.167	40	66.000	4.145	8	60.250	12.116	40	8	TANC1	exonic	synonymous_SNV
RCC_T4--3	chr2:160053262	G	NA	55	0	54	63.259	7.889	0	0	0	54	0	TANC1	exonic	synonymous_SNV
RCC_T4--4	chr2:160053262	G	NA	53	0	53	64.547	5.528	0	0	0	53	0	TANC1	exonic	synonymous_SNV
RCC_T4--5	chr2:160053262	G	NA	47	0	47	64.532	8.032	0	0	0	47	0	TANC1	exonic	synonymous_SNV
RCC_T4--6	chr2:160053262	G	NA	37	0	37	66.270	6.127	0	0	0	37	0	TANC1	exonic	synonymous_SNV
RCC_T4--7	chr2:160053262	G	NA	35	0	35	67.486	3.275	0	0	0	35	0	TANC1	exonic	synonymous_SNV
RCC_T4--GL	chr2:160053262	G	NA	46	0	46	64.565	8.057	0	0	0	46	0	TANC1	exonic	synonymous_SNV
RCC_T4--1	chr2:160734672	G	NA	41	0	41	68.707	4.926	0	0	0	41	0	LY75,LY75-CD302	intronic	NA
RCC_T4--2	chr2:160734672	G	NA	23	0	23	67.609	3.917	0	0	0	23	0	LY75,LY75-CD302	intronic	NA
RCC_T4--3	chr2:160734672	G	C	34	0.206	27	68.111	6.381	7	67.714	2.430	27	7	LY75,LY75-CD302	intronic	NA
RCC_T4--4	chr2:160734672	G	NA	36	0	36	65.833	9.000	0	0	0	36	0	LY75,LY75-CD302	intronic	NA
RCC_T4--5	chr2:160734672	G	NA	39	0	39	67.615	3.581	0	0	0	39	0	LY75,LY75-CD302	intronic	NA
RCC_T4--6	chr2:160734672	G	NA	38	0	38	67.947	4.033	0	0	0	38	0	LY75,LY75-CD302	intronic	NA
RCC_T4--7	chr2:160734672	G	NA	40	0	40	67.775	5.161	0	0	0	40	0	LY75,LY75-CD302	intronic	NA
RCC_T4--GL	chr2:160734672	G	NA	40	0	40	67.250	7.452	0	0	0	40	0	LY75,LY75-CD302	intronic	NA
RCC_T4--1	chr2:160832517	C	NA	71	0	71	66.775	7.900	0	0	0	71	0	PLA2R1	intronic	NA
RCC_T4--2	chr2:160832517	C	NA	101	0	101	66.743	6.352	0	0	0	101	0	PLA2R1	intronic	NA
RCC_T4--3	chr2:160832517	C	A	58	0.103	52	67.635	4.450	6	65.167	4.535	52	6	PLA2R1	intronic	NA
RCC_T4--4	chr2:160832517	C	NA	70	0	70	68.400	4.879	0	0	0	70	0	PLA2R1	intronic	NA
RCC_T4--5	chr2:160832517	C	NA	69	0	69	68.377	4.145	0	0	0	69	0	PLA2R1	intronic	NA
RCC_T4--6	chr2:160832517	C	NA	70	0	70	67.743	3.937	0	0	0	70	0	PLA2R1	intronic	NA
RCC_T4--7	chr2:160832517	C	A	91	0.011	90	67.422	5.534	1	70.000	0.000	90	1	PLA2R1	intronic	NA
RCC_T4--GL	chr2:160832517	C	NA	64	0	64	67.234	4.666	0	0	0	64	0	PLA2R1	intronic	NA
RCC_T4--1	chr2:162877042	A	NA	22	0	19	69.895	2.378	0	0	0	19	0	DPP4	intronic	NA
RCC_T4--2	chr2:162877042	A	C	37	0.027	33	69.424	2.862	1	66.000	0.000	33	1	DPP4	intronic	NA
RCC_T4--3	chr2:162877042	A	C	31	0.161	24	68.750	4.794	5	65.000	2.121	24	5	DPP4	intronic	NA
RCC_T4--4	chr2:162877042	A	C	32	0.031	29	69.586	4.732	1	65.000	0.000	29	1	DPP4	intronic	NA
RCC_T4--5	chr2:162877042	A	C	39	0.026	36	67.472	8.087	1	33.000	0.000	36	1	DPP4	intronic	NA
RCC_T4--6	chr2:162877042	A	NA	37	0	34	67.765	6.994	0	0	0	34	0	DPP4	intronic	NA
RCC_T4--7	chr2:162877042	A	NA	43	0	38	67.263	7.497	0	0	0	38	0	DPP4	intronic	NA
RCC_T4--GL	chr2:162877042	A	NA	39	0	37	69.811	2.961	0	0	0	37	0	DPP4	intronic	NA
RCC_T4--1	chr2:170783980	A	G	45	0.222	35	68.200	3.420	10	67.900	3.542	35	10	UBR3	intronic	NA
RCC_T4--2	chr2:170783980	A	G	44	0.273	32	66.469	3.592	12	68.583	3.450	32	12	UBR3	intronic	NA
RCC_T4--3	chr2:170783980	A	G	54	0.296	38	69.947	2.691	16	67.375	3.897	38	16	UBR3	intronic	NA
RCC_T4--4	chr2:170783980	A	G	45	0.178	37	69.351	2.519	8	68.125	4.643	37	8	UBR3	intronic	NA
RCC_T4--5	chr2:170783980	A	G	56	0.393	34	69.176	2.622	22	68.545	3.661	34	22	UBR3	intronic	NA
RCC_T4--6	chr2:170783980	A	G	65	0.031	63	69.460	3.125	2	70.000	2.828	63	2	UBR3	intronic	NA
RCC_T4--7	chr2:170783980	A	G	63	0.429	36	68.472	3.668	27	69.963	2.519	36	27	UBR3	intronic	NA
RCC_T4--GL	chr2:170783980	A	NA	55	0	55	68.964	3.410	0	0	0	55	0	UBR3	intronic	NA
RCC_T4--1	chr2:170789363	C	T	51	0.373	32	68.344	4.520	19	68.579	4.018	32	19	UBR3	intronic	NA
RCC_T4--2	chr2:170789363	C	T	43	0.349	28	67.464	5.621	15	69.133	3.583	28	15	UBR3	intronic	NA
RCC_T4--3	chr2:170789363	C	T	47	0.362	30	67.700	5.080	17	68.353	2.957	30	17	UBR3	intronic	NA
RCC_T4--4	chr2:170789363	C	T	61	0.164	51	68.863	3.821	10	64.600	12.580	51	10	UBR3	intronic	NA
RCC_T4--5	chr2:170789363	C	T	41	0.268	30	67.133	6.590	11	68.636	3.325	30	11	UBR3	intronic	NA
RCC_T4--6	chr2:170789363	C	T	54	0.315	37	67.568	5.660	17	67.941	4.054	37	17	UBR3	intronic	NA
RCC_T4--7	chr2:170789363	C	T	49	0.265	36	68.917	3.820	13	68.846	3.508	36	13	UBR3	intronic	NA
RCC_T4--GL	chr2:170789363	C	NA	41	0	41	68.220	4.596	0	0	0	41	0	UBR3	intronic	NA
RCC_T4--1	chr2:183584776	G	NA	160	0	160	68.331	5.478	0	0	0	160	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:183584776	G	NA	216	0	216	68.181	4.948	0	0	0	216	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:183584776	G	NA	177	0	176	68.727	3.770	0	0	0	176	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:183584776	G	NA	240	0	239	67.895	4.988	0	0	0	239	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:183584776	G	NA	204	0	204	68.000	4.438	0	0	0	204	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:183584776	G	NA	208	0	208	67.913	5.299	0	0	0	208	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:183584776	G	A	192	0.286	137	68.197	5.050	55	68.818	3.074	137	55	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:183584776	G	NA	177	0	176	68.199	4.127	0	0	0	176	0	DNAJC10	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:197872732	C	T	45	0.089	40	68.450	4.432	4	63.500	5.447	40	4	ANKRD44	intronic	NA
RCC_T4--2	chr2:197872732	C	T	56	0.071	51	68.667	5.039	4	66.750	1.500	51	4	ANKRD44	intronic	NA
RCC_T4--3	chr2:197872732	C	T	44	0.114	37	69.676	3.136	5	61.600	3.507	37	5	ANKRD44	intronic	NA
RCC_T4--4	chr2:197872732	C	T	40	0.125	32	68.906	5.607	5	65.000	2.550	32	5	ANKRD44	intronic	NA
RCC_T4--5	chr2:197872732	C	T	47	0.064	44	68.932	2.856	3	64.000	1.732	44	3	ANKRD44	intronic	NA
RCC_T4--6	chr2:197872732	C	T	51	0.078	46	67.543	6.778	4	66.000	0.000	46	4	ANKRD44	intronic	NA
RCC_T4--7	chr2:197872732	C	T	37	0.054	35	67.857	6.856	2	62.000	0.000	35	2	ANKRD44	intronic	NA
RCC_T4--GL	chr2:197872732	C	NA	40	0	36	68.167	5.158	0	0	0	36	0	ANKRD44	intronic	NA
RCC_T4--1	chr2:198266834	T	NA	131	0	131	67.344	5.310	0	0	0	131	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:198266834	T	C	144	0.250	107	66.617	6.247	36	68.722	3.168	107	36	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:198266834	T	NA	101	0	101	66.089	6.671	0	0	0	101	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:198266834	T	NA	125	0	125	66.976	5.243	0	0	0	125	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:198266834	T	NA	129	0	129	67.194	6.148	0	0	0	129	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:198266834	T	NA	147	0	147	67.061	6.587	0	0	0	147	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:198266834	T	NA	112	0	112	67.009	6.171	0	0	0	112	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:198266834	T	NA	127	0	127	66.843	6.478	0	0	0	127	0	SF3B1	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:203972282	C	G	265	0.215	207	69.145	3.925	57	69.737	2.525	207	57	NBEAL1	intronic	NA
RCC_T4--2	chr2:203972282	C	G	318	0.286	226	68.066	4.896	91	68.516	5.100	226	91	NBEAL1	intronic	NA
RCC_T4--3	chr2:203972282	C	G	205	0.283	147	68.864	3.962	58	69.000	3.319	147	58	NBEAL1	intronic	NA
RCC_T4--4	chr2:203972282	C	G	321	0.234	245	68.669	4.064	75	67.987	4.323	245	75	NBEAL1	intronic	NA
RCC_T4--5	chr2:203972282	C	G	327	0.297	230	68.896	3.755	97	69.175	3.767	230	97	NBEAL1	intronic	NA
RCC_T4--6	chr2:203972282	C	G	385	0.416	225	68.982	4.250	160	68.862	4.331	225	160	NBEAL1	intronic	NA
RCC_T4--7	chr2:203972282	C	G	284	0.320	193	68.642	5.462	91	67.802	5.778	193	91	NBEAL1	intronic	NA
RCC_T4--GL	chr2:203972282	C	NA	270	0	270	68.889	4.043	0	0	0	270	0	NBEAL1	intronic	NA
RCC_T4--1	chr2:220478891	C	T	50	0.120	44	66.591	6.392	6	64.500	4.278	44	6	STK11IP	exonic	stopgain_SNV
RCC_T4--2	chr2:220478891	C	NA	52	0	52	65.615	6.675	0	0	0	52	0	STK11IP	exonic	stopgain_SNV
RCC_T4--3	chr2:220478891	C	T	42	0.024	40	67.075	4.703	1	65.000	0.000	40	1	STK11IP	exonic	stopgain_SNV
RCC_T4--4	chr2:220478891	C	NA	47	0	47	63.851	9.462	0	0	0	47	0	STK11IP	exonic	stopgain_SNV
RCC_T4--5	chr2:220478891	C	NA	45	0	45	65.844	8.586	0	0	0	45	0	STK11IP	exonic	stopgain_SNV
RCC_T4--6	chr2:220478891	C	NA	63	0	63	65.952	7.678	0	0	0	63	0	STK11IP	exonic	stopgain_SNV
RCC_T4--7	chr2:220478891	C	NA	43	0	43	65.744	8.183	0	0	0	43	0	STK11IP	exonic	stopgain_SNV
RCC_T4--GL	chr2:220478891	C	NA	41	0	41	67.024	4.840	0	0	0	41	0	STK11IP	exonic	stopgain_SNV
RCC_T4--1	chr2:220494991	A	NA	23	0	23	65.174	4.428	0	0	0	23	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:220494991	A	T	35	0.029	34	62.353	9.422	1	38.000	0.000	34	1	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:220494991	A	NA	29	0	29	64.828	7.368	0	0	0	29	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:220494991	A	NA	24	0	24	64.583	4.736	0	0	0	24	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:220494991	A	NA	22	0	22	65.091	5.442	0	0	0	22	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:220494991	A	T	36	0.111	32	61.750	10.704	4	67.000	2.828	32	4	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:220494991	A	NA	25	0	25	65.240	5.981	0	0	0	25	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:220494991	A	NA	37	0	37	64.270	8.752	0	0	0	37	0	SLC4A3	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:220499988	C	A	38	0.316	26	68.231	4.861	12	65.333	5.483	26	12	SLC4A3	intronic	NA
RCC_T4--2	chr2:220499988	C	A	53	0.170	44	68.182	5.123	9	61.889	12.494	44	9	SLC4A3	intronic	NA
RCC_T4--3	chr2:220499988	C	A	44	0.341	28	66.964	5.853	15	62.667	8.772	28	15	SLC4A3	intronic	NA
RCC_T4--4	chr2:220499988	C	A	50	0.320	34	64.118	11.483	16	66.562	5.202	34	16	SLC4A3	intronic	NA
RCC_T4--5	chr2:220499988	C	A	67	0.209	53	66.981	4.383	14	62.500	9.843	53	14	SLC4A3	intronic	NA
RCC_T4--6	chr2:220499988	C	A	57	0.263	42	66.595	7.787	15	68.467	3.461	42	15	SLC4A3	intronic	NA
RCC_T4--7	chr2:220499988	C	A	45	0.200	36	66.306	6.364	9	65.222	5.044	36	9	SLC4A3	intronic	NA
RCC_T4--GL	chr2:220499988	C	NA	40	0	40	67.700	4.014	0	0	0	40	0	SLC4A3	intronic	NA
RCC_T4--1	chr22:29669942	T	NA	35	0	35	69.171	2.549	0	0	0	35	0	EWSR1	intronic	NA
RCC_T4--2	chr22:29669942	T	C	30	0.133	26	65.385	8.635	4	64.250	1.500	26	4	EWSR1	intronic	NA
RCC_T4--3	chr22:29669942	T	NA	36	0	36	68.639	6.715	0	0	0	36	0	EWSR1	intronic	NA
RCC_T4--4	chr22:29669942	T	NA	39	0	39	68.231	4.164	0	0	0	39	0	EWSR1	intronic	NA
RCC_T4--5	chr22:29669942	T	NA	45	0	45	68.489	3.101	0	0	0	45	0	EWSR1	intronic	NA
RCC_T4--6	chr22:29669942	T	C	52	0.019	51	66.471	6.637	1	38.000	0.000	51	1	EWSR1	intronic	NA
RCC_T4--7	chr22:29669942	T	NA	39	0	39	65.769	8.872	0	0	0	39	0	EWSR1	intronic	NA
RCC_T4--GL	chr22:29669942	T	NA	46	0	46	67.413	4.650	0	0	0	46	0	EWSR1	intronic	NA
RCC_T4--1	chr22:30885728	T	C	76	0.039	43	68.070	3.460	3	64.000	2.000	43	3	SEC14L4	UTR3	NA
RCC_T4--2	chr22:30885728	T	C	88	0.080	51	66.255	7.427	7	63.714	3.861	51	7	SEC14L4	UTR3	NA
RCC_T4--3	chr22:30885728	T	C	78	0.013	46	66.000	4.274	1	66.000	0.000	46	1	SEC14L4	UTR3	NA
RCC_T4--4	chr22:30885728	T	C	71	0.056	35	66.000	7.460	4	63.750	2.630	35	4	SEC14L4	UTR3	NA
RCC_T4--5	chr22:30885728	T	NA	77	0	46	64.565	8.689	0	0	0	46	0	SEC14L4	UTR3	NA
RCC_T4--6	chr22:30885728	T	C	84	0.048	48	65.229	8.119	4	63.750	2.630	48	4	SEC14L4	UTR3	NA
RCC_T4--7	chr22:30885728	T	C	76	0.026	44	64.886	8.633	2	66.500	3.536	44	2	SEC14L4	UTR3	NA
RCC_T4--GL	chr22:30885728	T	NA	69	0	36	66.028	7.621	0	0	0	36	0	SEC14L4	UTR3	NA
RCC_T4--1	chr22:32924889	C	NA	43	0	43	64.488	6.559	0	0	0	43	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--2	chr22:32924889	C	T	36	0.111	32	64.656	3.607	4	64.250	5.560	32	4	SYN3	exonic	nonsynonymous_SNV
RCC_T4--3	chr22:32924889	C	NA	36	0	36	63.611	9.357	0	0	0	36	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--4	chr22:32924889	C	NA	33	0	33	63.879	7.008	0	0	0	33	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--5	chr22:32924889	C	T	26	0.038	25	63.960	4.695	1	66.000	0.000	25	1	SYN3	exonic	nonsynonymous_SNV
RCC_T4--6	chr22:32924889	C	NA	36	0	36	60.806	9.821	0	0	0	36	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--7	chr22:32924889	C	NA	39	0	39	63.872	6.242	0	0	0	39	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr22:32924889	C	NA	49	0	48	63.312	9.032	0	0	0	48	0	SYN3	exonic	nonsynonymous_SNV
RCC_T4--1	chr22:36900392	C	T	52	0.288	37	64.757	9.543	15	67.933	3.515	37	15	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--2	chr22:36900392	C	T	45	0.222	35	66.743	6.985	10	65.900	5.896	35	10	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--3	chr22:36900392	C	T	35	0.286	25	66.880	6.346	10	63.200	12.127	25	10	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--4	chr22:36900392	C	T	28	0.179	23	65.348	8.472	5	68.800	3.114	23	5	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--5	chr22:36900392	C	T	48	0.229	37	66.405	6.269	11	67.545	1.968	37	11	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--6	chr22:36900392	C	T	56	0.375	35	66.457	7.221	21	67.571	3.668	35	21	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--7	chr22:36900392	C	T	46	0.522	22	64.591	9.379	24	67.708	3.951	22	24	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr22:36900392	C	NA	37	0	37	68.081	4.406	0	0	0	37	0	FOXRED2	exonic	nonsynonymous_SNV
RCC_T4--1	chr22:36900531	C	NA	55	0	55	65.709	5.377	0	0	0	55	0	FOXRED2	intronic	NA
RCC_T4--2	chr22:36900531	C	NA	26	0	26	64.115	7.654	0	0	0	26	0	FOXRED2	intronic	NA
RCC_T4--3	chr22:36900531	C	A	37	0.108	33	65.848	4.473	4	60.750	5.123	33	4	FOXRED2	intronic	NA
RCC_T4--4	chr22:36900531	C	NA	36	0	36	63.500	7.829	0	0	0	36	0	FOXRED2	intronic	NA
RCC_T4--5	chr22:36900531	C	NA	29	0	29	63.690	8.661	0	0	0	29	0	FOXRED2	intronic	NA
RCC_T4--6	chr22:36900531	C	NA	43	0	43	64.116	8.778	0	0	0	43	0	FOXRED2	intronic	NA
RCC_T4--7	chr22:36900531	C	NA	34	0	34	64.235	8.199	0	0	0	34	0	FOXRED2	intronic	NA
RCC_T4--GL	chr22:36900531	C	NA	35	0	35	65.343	3.963	0	0	0	35	0	FOXRED2	intronic	NA
RCC_T4--1	chr22:40043951	G	NA	49	0	49	65.510	6.455	0	0	0	49	0	CACNA1I	intronic	NA
RCC_T4--2	chr22:40043951	G	C	39	0.231	30	65.233	7.990	9	61.444	10.406	30	9	CACNA1I	intronic	NA
RCC_T4--3	chr22:40043951	G	NA	49	0	49	65.388	8.990	0	0	0	49	0	CACNA1I	intronic	NA
RCC_T4--4	chr22:40043951	G	NA	40	0	40	62.050	12.119	0	0	0	40	0	CACNA1I	intronic	NA
RCC_T4--5	chr22:40043951	G	C	56	0.018	55	63.909	9.023	1	62.000	0.000	55	1	CACNA1I	intronic	NA
RCC_T4--6	chr22:40043951	G	C	43	0.023	42	65.381	8.630	1	66.000	0.000	42	1	CACNA1I	intronic	NA
RCC_T4--7	chr22:40043951	G	NA	33	0	33	66.848	4.473	0	0	0	33	0	CACNA1I	intronic	NA
RCC_T4--GL	chr22:40043951	G	NA	55	0	55	66.200	6.231	0	0	0	55	0	CACNA1I	intronic	NA
RCC_T4--1	chr22:41621998	T	C	29	0.034	28	57.536	12.659	1	38.000	0.000	28	1	L3MBTL2	intronic	NA
RCC_T4--2	chr22:41621998	T	NA	26	0	26	56.615	13.149	0	0	0	26	0	L3MBTL2	intronic	NA
RCC_T4--3	chr22:41621998	T	NA	18	0	17	56.235	15.311	0	0	0	17	0	L3MBTL2	intronic	NA
RCC_T4--4	chr22:41621998	T	NA	26	0	26	60.038	10.846	0	0	0	26	0	L3MBTL2	intronic	NA
RCC_T4--5	chr22:41621998	T	C	27	0.148	22	59.136	12.159	4	49.250	18.768	22	4	L3MBTL2	intronic	NA
RCC_T4--6	chr22:41621998	T	NA	43	0	43	54.884	12.389	0	0	0	43	0	L3MBTL2	intronic	NA
RCC_T4--7	chr22:41621998	T	NA	30	0	30	56.800	10.791	0	0	0	30	0	L3MBTL2	intronic	NA
RCC_T4--GL	chr22:41621998	T	NA	35	0	34	57.765	11.955	0	0	0	34	0	L3MBTL2	intronic	NA
RCC_T4--1	chr22:41919113	T	G	48	0.062	45	60.800	11.690	3	38.000	2.646	45	3	ACO2	intronic	NA
RCC_T4--2	chr22:41919113	T	G	42	0.167	35	58.657	11.901	7	35.857	2.193	35	7	ACO2	intronic	NA
RCC_T4--3	chr22:41919113	T	NA	27	0	27	61.444	10.150	0	0	0	27	0	ACO2	intronic	NA
RCC_T4--4	chr22:41919113	T	NA	24	0	24	57.667	13.180	0	0	0	24	0	ACO2	intronic	NA
RCC_T4--5	chr22:41919113	T	G	40	0.050	38	57.895	12.693	2	38.000	7.071	38	2	ACO2	intronic	NA
RCC_T4--6	chr22:41919113	T	G	28	0.107	23	64.870	7.916	3	39.000	5.196	23	3	ACO2	intronic	NA
RCC_T4--7	chr22:41919113	T	G	20	0.100	18	61.056	13.427	2	38.000	7.071	18	2	ACO2	intronic	NA
RCC_T4--GL	chr22:41919113	T	NA	37	0	37	58.189	12.306	0	0	0	37	0	ACO2	intronic	NA
RCC_T4--1	chr2:242437607	C	NA	49	0	49	67.041	3.142	0	0	0	49	0	STK25	intronic	NA
RCC_T4--2	chr2:242437607	C	NA	43	0	43	62.884	9.006	0	0	0	43	0	STK25	intronic	NA
RCC_T4--3	chr2:242437607	C	NA	42	0	41	65.610	5.495	0	0	0	41	0	STK25	intronic	NA
RCC_T4--4	chr2:242437607	C	NA	35	0	35	63.314	7.922	0	0	0	35	0	STK25	intronic	NA
RCC_T4--5	chr2:242437607	C	NA	38	0	38	65.947	7.056	0	0	0	38	0	STK25	intronic	NA
RCC_T4--6	chr2:242437607	C	NA	30	0	30	63.000	10.003	0	0	0	30	0	STK25	intronic	NA
RCC_T4--7	chr2:242437607	C	T	35	0.114	31	64.677	9.357	4	67.000	3.651	31	4	STK25	intronic	NA
RCC_T4--GL	chr2:242437607	C	NA	39	0	39	65.205	7.403	0	0	0	39	0	STK25	intronic	NA
RCC_T4--1	chr22:42793944	C	T	40	0.325	26	64.423	7.839	13	61.154	13.825	26	13	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--2	chr22:42793944	C	T	42	0.262	31	65.000	7.371	11	62.000	10.334	31	11	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--3	chr22:42793944	C	T	40	0.250	30	63.233	8.050	10	63.500	9.891	30	10	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--4	chr22:42793944	C	T	36	0.250	27	65.333	4.557	9	63.222	4.438	27	9	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--5	chr22:42793944	C	T	55	0.455	30	64.933	6.028	25	64.000	9.605	30	25	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--6	chr22:42793944	C	T	73	0.452	39	65.205	6.538	33	59.606	12.242	39	33	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--7	chr22:42793944	C	T	41	0.317	28	66.036	6.089	13	61.000	13.058	28	13	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr22:42793944	C	NA	40	0	40	67.125	3.702	0	0	0	40	0	NFAM1	exonic	nonsynonymous_SNV
RCC_T4--1	chr22:50686076	G	NA	53	0	53	65.377	6.514	0	0	0	53	0	HDAC10	intronic	NA
RCC_T4--2	chr22:50686076	G	A	37	0.162	30	64.500	7.181	6	64.667	8.892	30	6	HDAC10	intronic	NA
RCC_T4--3	chr22:50686076	G	NA	39	0	39	64.564	5.893	0	0	0	39	0	HDAC10	intronic	NA
RCC_T4--4	chr22:50686076	G	NA	44	0	44	63.591	7.617	0	0	0	44	0	HDAC10	intronic	NA
RCC_T4--5	chr22:50686076	G	NA	53	0	53	61.434	10.274	0	0	0	53	0	HDAC10	intronic	NA
RCC_T4--6	chr22:50686076	G	NA	44	0	44	65.250	7.496	0	0	0	44	0	HDAC10	intronic	NA
RCC_T4--7	chr22:50686076	G	NA	31	0	31	65.710	7.207	0	0	0	31	0	HDAC10	intronic	NA
RCC_T4--GL	chr22:50686076	G	NA	33	0	33	65.000	6.432	0	0	0	33	0	HDAC10	intronic	NA
RCC_T4--1	chr22:51063673	C	NA	27	0	27	66.741	3.601	0	0	0	27	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--2	chr22:51063673	C	NA	24	0	24	66.042	4.196	0	0	0	24	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--3	chr22:51063673	C	NA	20	0	20	63.650	9.724	0	0	0	20	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--4	chr22:51063673	C	NA	28	0	28	64.750	4.584	0	0	0	28	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--5	chr22:51063673	C	NA	29	0	29	65.414	4.747	0	0	0	29	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--6	chr22:51063673	C	NA	29	0	29	65.517	5.481	0	0	0	29	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--7	chr22:51063673	C	T	24	0.167	20	59.450	12.258	4	60.250	9.179	20	4	ARSA	exonic	nonsynonymous_SNV
RCC_T4--GL	chr22:51063673	C	NA	36	0	36	65.250	4.771	0	0	0	36	0	ARSA	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:26540855	G	NA	60	0	60	68.267	4.797	0	0	0	60	0	GPR113	intronic	NA
RCC_T4--2	chr2:26540855	G	NA	37	0	37	67.919	5.041	0	0	0	37	0	GPR113	intronic	NA
RCC_T4--3	chr2:26540855	G	NA	40	0	40	66.275	6.401	0	0	0	40	0	GPR113	intronic	NA
RCC_T4--4	chr2:26540855	G	A	57	0.140	49	66.837	7.148	8	67.625	2.722	49	8	GPR113	intronic	NA
RCC_T4--5	chr2:26540855	G	NA	60	0	60	68.000	5.575	0	0	0	60	0	GPR113	intronic	NA
RCC_T4--6	chr2:26540855	G	NA	55	0	55	67.636	4.568	0	0	0	55	0	GPR113	intronic	NA
RCC_T4--7	chr2:26540855	G	NA	57	0	57	66.596	6.478	0	0	0	57	0	GPR113	intronic	NA
RCC_T4--GL	chr2:26540855	G	NA	41	0	41	67.537	5.921	0	0	0	41	0	GPR113	intronic	NA
RCC_T4--1	chr2:27596008	C	NA	19	0	19	57.263	10.655	0	0	0	19	0	SNX17	intronic	NA
RCC_T4--2	chr2:27596008	C	NA	22	0	22	58.864	7.852	0	0	0	22	0	SNX17	intronic	NA
RCC_T4--3	chr2:27596008	C	G	28	0.036	27	54.519	14.208	1	49.000	0.000	27	1	SNX17	intronic	NA
RCC_T4--4	chr2:27596008	C	NA	28	0	28	58.214	12.609	0	0	0	28	0	SNX17	intronic	NA
RCC_T4--5	chr2:27596008	C	G	21	0.048	20	58.150	11.753	1	36.000	0.000	20	1	SNX17	intronic	NA
RCC_T4--6	chr2:27596008	C	NA	30	0	30	57.867	12.224	0	0	0	30	0	SNX17	intronic	NA
RCC_T4--7	chr2:27596008	C	G	21	0.238	15	59.933	9.750	5	33.800	1.789	15	5	SNX17	intronic	NA
RCC_T4--GL	chr2:27596008	C	NA	33	0	33	60.727	9.032	0	0	0	33	0	SNX17	intronic	NA
RCC_T4--1	chr2:29234376	C	A	169	0.006	168	66.161	7.632	1	63.000	0.000	168	1	FAM179A	intronic	NA
RCC_T4--2	chr2:29234376	C	NA	171	0	170	65.106	7.132	0	0	0	170	0	FAM179A	intronic	NA
RCC_T4--3	chr2:29234376	C	NA	108	0	108	65.269	7.664	0	0	0	108	0	FAM179A	intronic	NA
RCC_T4--4	chr2:29234376	C	NA	153	0	152	64.921	6.065	0	0	0	152	0	FAM179A	intronic	NA
RCC_T4--5	chr2:29234376	C	NA	170	0	170	66.129	7.129	0	0	0	170	0	FAM179A	intronic	NA
RCC_T4--6	chr2:29234376	C	A	172	0.302	120	65.792	6.050	52	67.192	4.636	120	52	FAM179A	intronic	NA
RCC_T4--7	chr2:29234376	C	NA	146	0	146	66.164	7.239	0	0	0	146	0	FAM179A	intronic	NA
RCC_T4--GL	chr2:29234376	C	NA	137	0	137	64.394	8.305	0	0	0	137	0	FAM179A	intronic	NA
RCC_T4--1	chr2:32481794	T	A	67	0.090	36	69.389	2.780	6	65.000	4.195	36	6	NLRC4	intronic	NA
RCC_T4--2	chr2:32481794	T	A	82	0.049	37	69.081	3.546	4	65.750	2.630	37	4	NLRC4	intronic	NA
RCC_T4--3	chr2:32481794	T	A	66	0.061	32	68.281	7.077	4	66.750	1.258	32	4	NLRC4	intronic	NA
RCC_T4--4	chr2:32481794	T	A	81	0.037	47	67.447	5.429	3	66.000	3.464	47	3	NLRC4	intronic	NA
RCC_T4--5	chr2:32481794	T	A	73	0.027	41	67.732	3.735	2	64.500	3.536	41	2	NLRC4	intronic	NA
RCC_T4--6	chr2:32481794	T	A	89	0.034	54	68.370	4.262	3	65.333	1.528	54	3	NLRC4	intronic	NA
RCC_T4--7	chr2:32481794	T	A	77	0.026	40	68.250	4.425	2	65.000	0.000	40	2	NLRC4	intronic	NA
RCC_T4--GL	chr2:32481794	T	NA	78	0	40	67.575	4.992	0	0	0	40	0	NLRC4	intronic	NA
RCC_T4--1	chr2:32626326	C	T	402	0.002	401	67.401	5.925	1	33.000	0.000	401	1	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:32626326	C	T	479	0.002	477	66.180	6.786	1	56.000	0.000	477	1	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:32626326	C	T	385	0.275	279	66.989	6.159	106	65.953	7.980	279	106	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:32626326	C	NA	462	0	462	66.595	6.255	0	0	0	462	0	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:32626326	C	NA	490	0	490	66.924	6.483	0	0	0	490	0	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:32626326	C	NA	527	0	527	66.934	5.835	0	0	0	527	0	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:32626326	C	NA	404	0	404	67.129	5.982	0	0	0	404	0	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:32626326	C	NA	465	0	465	66.791	6.373	0	0	0	465	0	BIRC6	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:37579831	C	NA	58	0	58	67.414	6.956	0	0	0	58	0	QPCT	intronic	NA
RCC_T4--2	chr2:37579831	C	G	63	0.175	52	67.923	4.584	11	67.182	3.868	52	11	QPCT	intronic	NA
RCC_T4--3	chr2:37579831	C	NA	58	0	58	66.741	4.979	0	0	0	58	0	QPCT	intronic	NA
RCC_T4--4	chr2:37579831	C	G	67	0.015	66	66.470	6.746	1	55.000	0.000	66	1	QPCT	intronic	NA
RCC_T4--5	chr2:37579831	C	NA	58	0	58	66.345	7.594	0	0	0	58	0	QPCT	intronic	NA
RCC_T4--6	chr2:37579831	C	NA	82	0	82	67.159	5.964	0	0	0	82	0	QPCT	intronic	NA
RCC_T4--7	chr2:37579831	C	NA	78	0	78	68.487	3.741	0	0	0	78	0	QPCT	intronic	NA
RCC_T4--GL	chr2:37579831	C	NA	69	0	69	67.594	6.415	0	0	0	69	0	QPCT	intronic	NA
RCC_T4--1	chr2:66667788	A	NA	26	0	24	53.208	8.582	0	0	0	24	0	MEIS1	intronic	NA
RCC_T4--2	chr2:66667788	A	C	40	0.025	38	53.263	9.805	1	39.000	0.000	38	1	MEIS1	intronic	NA
RCC_T4--3	chr2:66667788	A	C	21	0.095	19	51.158	10.746	2	37.000	1.414	19	2	MEIS1	intronic	NA
RCC_T4--4	chr2:66667788	A	C	30	0.033	29	52.690	9.185	1	36.000	0.000	29	1	MEIS1	intronic	NA
RCC_T4--5	chr2:66667788	A	C	43	0.140	35	48.857	10.553	6	35.667	1.366	35	6	MEIS1	intronic	NA
RCC_T4--6	chr2:66667788	A	NA	23	0	23	56.391	9.894	0	0	0	23	0	MEIS1	intronic	NA
RCC_T4--7	chr2:66667788	A	NA	33	0	32	55.188	8.426	0	0	0	32	0	MEIS1	intronic	NA
RCC_T4--GL	chr2:66667788	A	NA	36	0	33	50.152	10.759	0	0	0	33	0	MEIS1	intronic	NA
RCC_T4--1	chr2:71740919	C	A	55	0.109	49	64.612	6.271	6	65.167	2.041	49	6	DYSF	exonic	nonsynonymous_SNV
RCC_T4--2	chr2:71740919	C	NA	52	0	52	64.846	5.282	0	0	0	52	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--3	chr2:71740919	C	NA	47	0	47	64.213	8.995	0	0	0	47	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--4	chr2:71740919	C	NA	44	0	44	65.545	5.580	0	0	0	44	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--5	chr2:71740919	C	NA	55	0	55	64.891	5.367	0	0	0	55	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--6	chr2:71740919	C	NA	52	0	52	62.885	9.035	0	0	0	52	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--7	chr2:71740919	C	NA	54	0	54	65.222	6.258	0	0	0	54	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--GL	chr2:71740919	C	NA	59	0	59	63.424	7.661	0	0	0	59	0	DYSF	exonic	nonsynonymous_SNV
RCC_T4--1	chr2:73646191	A	G	68	0.176	56	66.857	7.018	12	69.000	3.861	56	12	ALMS1	intronic	NA
RCC_T4--2	chr2:73646191	A	G	89	0.225	69	68.406	3.931	20	68.350	4.107	69	20	ALMS1	intronic	NA
RCC_T4--3	chr2:73646191	A	G	75	0.320	51	68.275	4.887	24	68.625	4.372	51	24	ALMS1	intronic	NA
RCC_T4--4	chr2:73646191	A	G	73	0.233	55	68.291	5.553	17	66.941	6.280	55	17	ALMS1	intronic	NA
RCC_T4--5	chr2:73646191	A	G	79	0.241	59	67.492	4.565	19	69.105	3.999	59	19	ALMS1	intronic	NA
RCC_T4--6	chr2:73646191	A	G	64	0.109	57	68.175	5.641	7	70.429	1.134	57	7	ALMS1	intronic	NA
RCC_T4--7	chr2:73646191	A	G	85	0.318	58	68.172	5.332	27	69.704	3.314	58	27	ALMS1	intronic	NA
RCC_T4--GL	chr2:73646191	A	NA	63	0	63	67.619	6.225	0	0	0	63	0	ALMS1	intronic	NA
RCC_T4--1	chr2:77748605	A	T	54	0.056	32	68.875	3.471	3	62.000	0.000	32	3	LRRTM4	intronic	NA
RCC_T4--2	chr2:77748605	A	T	44	0.045	32	67.094	4.855	2	63.500	2.121	32	2	LRRTM4	intronic	NA
RCC_T4--3	chr2:77748605	A	T	51	0.059	32	68.875	3.377	3	58.000	14.799	32	3	LRRTM4	intronic	NA
RCC_T4--4	chr2:77748605	A	T	57	0.053	26	67.385	4.517	3	63.000	1.732	26	3	LRRTM4	intronic	NA
RCC_T4--5	chr2:77748605	A	T	58	0.086	25	67.520	3.070	5	64.800	2.490	25	5	LRRTM4	intronic	NA
RCC_T4--6	chr2:77748605	A	T	52	0.096	26	68.231	3.216	5	64.400	1.342	26	5	LRRTM4	intronic	NA
RCC_T4--7	chr2:77748605	A	T	45	0.067	25	67.520	4.214	3	62.667	2.082	25	3	LRRTM4	intronic	NA
RCC_T4--GL	chr2:77748605	A	NA	61	0	34	68.794	3.616	0	0	0	34	0	LRRTM4	intronic	NA
RCC_T4--1	chr2:79363872	T	C	27	0.185	22	63.773	10.033	5	69.600	2.702	22	5	REG1P	ncRNA_exonic	NA
RCC_T4--2	chr2:79363872	T	NA	34	0	34	68.735	2.998	0	0	0	34	0	REG1P	ncRNA_exonic	NA
RCC_T4--3	chr2:79363872	T	NA	24	0	24	67.083	5.748	0	0	0	24	0	REG1P	ncRNA_exonic	NA
RCC_T4--4	chr2:79363872	T	NA	20	0	20	68.000	3.839	0	0	0	20	0	REG1P	ncRNA_exonic	NA
RCC_T4--5	chr2:79363872	T	NA	32	0	32	68.188	3.605	0	0	0	32	0	REG1P	ncRNA_exonic	NA
RCC_T4--6	chr2:79363872	T	NA	42	0	42	68.310	6.683	0	0	0	42	0	REG1P	ncRNA_exonic	NA
RCC_T4--7	chr2:79363872	T	NA	32	0	32	67.812	7.222	0	0	0	32	0	REG1P	ncRNA_exonic	NA
RCC_T4--GL	chr2:79363872	T	NA	33	0	33	68.303	7.222	0	0	0	33	0	REG1P	ncRNA_exonic	NA
RCC_T4--1	chr2:86259316	T	NA	33	0	33	60.061	9.391	0	0	0	33	0	POLR1A	intronic	NA
RCC_T4--2	chr2:86259316	T	G	36	0.083	33	58.303	9.910	3	38.333	1.155	33	3	POLR1A	intronic	NA
RCC_T4--3	chr2:86259316	T	G	24	0.167	20	56.600	12.067	4	42.000	4.082	20	4	POLR1A	intronic	NA
RCC_T4--4	chr2:86259316	T	G	35	0.029	34	59.265	8.877	1	33.000	0.000	34	1	POLR1A	intronic	NA
RCC_T4--5	chr2:86259316	T	G	42	0.024	41	58.171	9.295	1	33.000	0.000	41	1	POLR1A	intronic	NA
RCC_T4--6	chr2:86259316	T	G	29	0.034	27	59.037	7.192	1	37.000	0.000	27	1	POLR1A	intronic	NA
RCC_T4--7	chr2:86259316	T	G	39	0.026	38	60.184	7.759	1	37.000	0.000	38	1	POLR1A	intronic	NA
RCC_T4--GL	chr2:86259316	T	NA	44	0	42	59.333	7.521	0	0	0	42	0	POLR1A	intronic	NA
RCC_T4--1	chr2:86267639	C	A	33	0.121	29	61.862	9.207	4	66.500	0.577	29	4	POLR1A	exonic	stopgain_SNV
RCC_T4--2	chr2:86267639	C	NA	46	0	46	60.391	8.296	0	0	0	46	0	POLR1A	exonic	stopgain_SNV
RCC_T4--3	chr2:86267639	C	NA	21	0	21	58.000	12.988	0	0	0	21	0	POLR1A	exonic	stopgain_SNV
RCC_T4--4	chr2:86267639	C	NA	31	0	31	61.419	9.905	0	0	0	31	0	POLR1A	exonic	stopgain_SNV
RCC_T4--5	chr2:86267639	C	NA	44	0	44	61.386	8.021	0	0	0	44	0	POLR1A	exonic	stopgain_SNV
RCC_T4--6	chr2:86267639	C	NA	33	0	33	57.061	12.760	0	0	0	33	0	POLR1A	exonic	stopgain_SNV
RCC_T4--7	chr2:86267639	C	A	37	0.027	36	57.389	12.201	1	33.000	0.000	36	1	POLR1A	exonic	stopgain_SNV
RCC_T4--GL	chr2:86267639	C	NA	36	0	36	63.000	7.687	0	0	0	36	0	POLR1A	exonic	stopgain_SNV
RCC_T4--1	chr2:91936275	G	A	84	0.250	63	67.444	3.421	21	66.190	4.033	63	21	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--2	chr2:91936275	G	NA	70	0	70	65.743	6.843	0	0	0	70	0	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--3	chr2:91936275	G	NA	79	0	79	65.696	4.786	0	0	0	79	0	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--4	chr2:91936275	G	A	89	0.011	87	65.874	7.039	1	72.000	0.000	87	1	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--5	chr2:91936275	G	A	90	0.344	59	65.898	6.062	31	66.387	7.159	59	31	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--6	chr2:91936275	G	NA	82	0	82	66.134	6.607	0	0	0	82	0	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--7	chr2:91936275	G	NA	81	0	81	66.556	6.979	0	0	0	81	0	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--GL	chr2:91936275	G	NA	108	0	108	66.509	5.118	0	0	0	108	0	LOC654342(dist=88300),GGT8P(dist=27093)	intergenic	NA
RCC_T4--1	chr2:96617203	A	C	93	0.194	75	70.000	2.731	18	68.778	3.655	75	18	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--2	chr2:96617203	A	C	102	0.225	79	68.899	4.269	23	67.043	6.183	79	23	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--3	chr2:96617203	A	C	84	0.202	67	69.866	2.828	17	69.529	4.155	67	17	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--4	chr2:96617203	A	C	101	0.059	95	69.179	3.753	6	69.167	1.722	95	6	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--5	chr2:96617203	A	C	89	0.157	75	69.773	3.995	14	68.857	3.570	75	14	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--6	chr2:96617203	A	C	146	0.185	119	69.496	4.562	27	69.667	2.760	119	27	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--7	chr2:96617203	A	C	99	0.131	86	70.116	2.587	13	69.769	2.862	86	13	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--GL	chr2:96617203	A	NA	109	0	109	70.018	2.848	0	0	0	109	0	LINC00342(dist=124474),FAHD2CP(dist=59096)	intergenic	NA
RCC_T4--1	chr3:11067597	C	NA	41	0	41	68.098	4.024	0	0	0	41	0	SLC6A1	intronic	NA
RCC_T4--2	chr3:11067597	C	NA	35	0	35	67.314	4.613	0	0	0	35	0	SLC6A1	intronic	NA
RCC_T4--3	chr3:11067597	C	NA	27	0	27	67.148	3.697	0	0	0	27	0	SLC6A1	intronic	NA
RCC_T4--4	chr3:11067597	C	NA	33	0	33	67.242	3.545	0	0	0	33	0	SLC6A1	intronic	NA
RCC_T4--5	chr3:11067597	C	NA	30	0	30	66.233	7.375	0	0	0	30	0	SLC6A1	intronic	NA
RCC_T4--6	chr3:11067597	C	G	29	0.138	25	65.400	8.534	4	63.250	1.500	25	4	SLC6A1	intronic	NA
RCC_T4--7	chr3:11067597	C	NA	17	0	17	65.941	4.562	0	0	0	17	0	SLC6A1	intronic	NA
RCC_T4--GL	chr3:11067597	C	NA	48	0	48	67.062	3.599	0	0	0	48	0	SLC6A1	intronic	NA
RCC_T4--1	chr3:115395370	A	C	24	0.125	21	55.333	13.455	3	37.000	1.732	21	3	GAP43	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:115395370	A	C	23	0.130	20	57.400	11.199	3	42.667	16.743	20	3	GAP43	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:115395370	A	C	30	0.200	24	54.417	14.634	6	36.333	4.676	24	6	GAP43	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:115395370	A	C	16	0.375	10	44.100	11.930	6	38.500	4.550	10	6	GAP43	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:115395370	A	C	36	0.194	29	53.759	12.665	7	36.143	3.625	29	7	GAP43	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:115395370	A	C	26	0.038	25	51.240	12.471	1	33.000	0.000	25	1	GAP43	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:115395370	A	C	28	0.179	22	51.864	13.167	5	34.800	2.490	22	5	GAP43	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:115395370	A	NA	36	0	36	59.333	11.752	0	0	0	36	0	GAP43	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:11744551	T	A	31	0.032	30	67.333	7.322	1	62.000	0.000	30	1	VGLL4	intronic	NA
RCC_T4--2	chr3:11744551	T	A	31	0.032	30	67.467	5.151	1	62.000	0.000	30	1	VGLL4	intronic	NA
RCC_T4--3	chr3:11744551	T	A	20	0.200	16	65.875	9.905	4	66.750	2.500	16	4	VGLL4	intronic	NA
RCC_T4--4	chr3:11744551	T	A	26	0.231	20	69.300	6.482	6	66.167	2.714	20	6	VGLL4	intronic	NA
RCC_T4--5	chr3:11744551	T	A	28	0.071	26	68.923	3.110	2	64.500	0.707	26	2	VGLL4	intronic	NA
RCC_T4--6	chr3:11744551	T	A	29	0.172	24	68.000	7.040	5	65.400	1.517	24	5	VGLL4	intronic	NA
RCC_T4--7	chr3:11744551	T	A	29	0.034	28	69.893	2.544	1	65.000	0.000	28	1	VGLL4	intronic	NA
RCC_T4--GL	chr3:11744551	T	NA	46	0	46	68.391	4.369	0	0	0	46	0	VGLL4	intronic	NA
RCC_T4--1	chr3:119246742	G	NA	48	0	48	67.604	7.049	0	0	0	48	0	CD80	intronic	NA
RCC_T4--2	chr3:119246742	G	NA	35	0	35	68.114	5.850	0	0	0	35	0	CD80	intronic	NA
RCC_T4--3	chr3:119246742	G	NA	46	0	45	68.200	5.392	0	0	0	45	0	CD80	intronic	NA
RCC_T4--4	chr3:119246742	G	NA	52	0	52	68.635	3.320	0	0	0	52	0	CD80	intronic	NA
RCC_T4--5	chr3:119246742	G	NA	56	0	56	67.732	6.157	0	0	0	56	0	CD80	intronic	NA
RCC_T4--6	chr3:119246742	G	A	50	0.120	44	67.455	4.123	6	66.500	2.345	44	6	CD80	intronic	NA
RCC_T4--7	chr3:119246742	G	NA	42	0	42	65.595	9.531	0	0	0	42	0	CD80	intronic	NA
RCC_T4--GL	chr3:119246742	G	NA	53	0	53	68.283	5.238	0	0	0	53	0	CD80	intronic	NA
RCC_T4--1	chr3:11926589	C	A	35	0.486	18	66.889	7.699	17	69.529	3.412	18	17	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--2	chr3:11926589	C	A	35	0.514	17	67.706	6.574	18	67.222	4.023	17	18	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--3	chr3:11926589	C	A	21	0.429	12	67.250	3.769	9	70.333	1.500	12	9	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--4	chr3:11926589	C	A	36	0.111	32	69.125	3.024	4	67.250	5.620	32	4	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--5	chr3:11926589	C	A	26	0.269	19	67.526	3.098	7	68.429	3.505	19	7	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--6	chr3:11926589	C	A	25	0.400	15	68.533	4.389	10	68.700	5.250	15	10	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--7	chr3:11926589	C	A	31	0.484	16	66.375	9.500	15	69.267	3.936	16	15	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--GL	chr3:11926589	C	NA	33	0	33	68.061	6.901	0	0	0	33	0	TAMM41(dist=38196),SYN2(dist=119273)	intergenic	NA
RCC_T4--1	chr3:126135231	A	C	42	0.048	39	58.436	10.563	2	40.000	9.899	39	2	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:126135231	A	C	43	0.163	34	56.059	10.776	7	39.286	7.847	34	7	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:126135231	A	C	43	0.070	40	53.600	12.842	3	38.000	0.000	40	3	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:126135231	A	C	42	0.071	38	57.632	10.923	3	34.667	2.887	38	3	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:126135231	A	C	37	0.027	36	58.750	10.882	1	38.000	0.000	36	1	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:126135231	A	NA	32	0	32	57.750	10.516	0	0	0	32	0	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:126135231	A	C	35	0.057	33	54.636	13.129	2	38.000	0.000	33	2	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:126135231	A	NA	34	0	34	56.118	13.130	0	0	0	34	0	CCDC37	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:129290350	A	NA	30	0	30	64.867	7.925	0	0	0	30	0	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--2	chr3:129290350	A	C	43	0.093	39	65.128	7.034	4	35.500	1.732	39	4	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--3	chr3:129290350	A	C	40	0.125	35	62.029	10.736	5	33.000	0.000	35	5	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--4	chr3:129290350	A	C	32	0.188	25	63.040	10.208	6	33.500	1.225	25	6	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--5	chr3:129290350	A	C	40	0.025	39	64.051	9.663	1	33.000	0.000	39	1	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--6	chr3:129290350	A	C	52	0.058	48	62.562	9.835	3	34.000	1.732	48	3	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--7	chr3:129290350	A	C	33	0.061	31	64.548	5.482	2	36.500	0.707	31	2	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--GL	chr3:129290350	A	NA	41	0	41	63.268	10.205	0	0	0	41	0	PLXND1(NM_015103:exon18:c.3336+2T>G)	splicing	NA
RCC_T4--1	chr3:129895463	C	NA	29	0	29	70.034	2.612	0	0	0	29	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--2	chr3:129895463	C	NA	23	0	23	68.478	6.748	0	0	0	23	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--3	chr3:129895463	C	NA	29	0	29	68.138	3.880	0	0	0	29	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--4	chr3:129895463	C	NA	30	0	30	68.233	5.042	0	0	0	30	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--5	chr3:129895463	C	NA	21	0	21	68.857	5.141	0	0	0	21	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--6	chr3:129895463	C	T	25	0.160	21	67.048	4.455	4	63.250	2.062	21	4	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--7	chr3:129895463	C	NA	26	0	26	68.615	3.981	0	0	0	26	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--GL	chr3:129895463	C	NA	34	0	34	67.294	6.422	0	0	0	34	0	FAM86HP(dist=65187),COL6A4P2(dist=36200)	intergenic	NA
RCC_T4--1	chr3:130884328	C	NA	129	0	129	68.155	5.818	0	0	0	129	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:130884328	C	NA	107	0	107	67.290	6.393	0	0	0	107	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:130884328	C	T	111	0.009	110	67.927	5.547	1	72.000	0.000	110	1	NEK11	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:130884328	C	NA	146	0	146	68.473	4.432	0	0	0	146	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:130884328	C	NA	129	0	129	67.891	3.937	0	0	0	129	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:130884328	C	T	147	0.286	105	67.543	5.178	42	67.667	5.234	105	42	NEK11	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:130884328	C	NA	141	0	141	67.149	6.025	0	0	0	141	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:130884328	C	NA	120	0	120	68.308	5.309	0	0	0	120	0	NEK11	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:13417778	G	NA	54	0	54	64.407	8.743	0	0	0	54	0	NUP210	intronic	NA
RCC_T4--2	chr3:13417778	G	NA	53	0	53	64.208	7.420	0	0	0	53	0	NUP210	intronic	NA
RCC_T4--3	chr3:13417778	G	NA	41	0	41	64.293	8.489	0	0	0	41	0	NUP210	intronic	NA
RCC_T4--4	chr3:13417778	G	T	63	0.127	55	64.782	7.843	8	60.625	9.365	55	8	NUP210	intronic	NA
RCC_T4--5	chr3:13417778	G	NA	62	0	62	65.581	5.615	0	0	0	62	0	NUP210	intronic	NA
RCC_T4--6	chr3:13417778	G	NA	44	0	44	64.295	6.788	0	0	0	44	0	NUP210	intronic	NA
RCC_T4--7	chr3:13417778	G	NA	47	0	47	64.511	6.814	0	0	0	47	0	NUP210	intronic	NA
RCC_T4--GL	chr3:13417778	G	NA	65	0	65	63.662	8.541	0	0	0	65	0	NUP210	intronic	NA
RCC_T4--1	chr3:156706180	A	NA	35	0	34	66.088	6.699	0	0	0	34	0	LEKR1	intronic	NA
RCC_T4--2	chr3:156706180	A	NA	35	0	35	66.114	4.234	0	0	0	35	0	LEKR1	intronic	NA
RCC_T4--3	chr3:156706180	A	NA	32	0	32	64.438	8.409	0	0	0	32	0	LEKR1	intronic	NA
RCC_T4--4	chr3:156706180	A	NA	42	0	42	66.690	5.795	0	0	0	42	0	LEKR1	intronic	NA
RCC_T4--5	chr3:156706180	A	NA	44	0	44	64.909	6.205	0	0	0	44	0	LEKR1	intronic	NA
RCC_T4--6	chr3:156706180	A	T	36	0.028	35	65.571	7.492	1	38.000	0.000	35	1	LEKR1	intronic	NA
RCC_T4--7	chr3:156706180	A	T	35	0.114	31	63.097	10.818	4	62.750	2.872	31	4	LEKR1	intronic	NA
RCC_T4--GL	chr3:156706180	A	NA	33	0	33	66.273	6.448	0	0	0	33	0	LEKR1	intronic	NA
RCC_T4--1	chr3:15719585	G	NA	28	0	28	68.250	6.114	0	0	0	28	0	ANKRD28	intronic	NA
RCC_T4--2	chr3:15719585	G	NA	38	0	38	66.711	7.996	0	0	0	38	0	ANKRD28	intronic	NA
RCC_T4--3	chr3:15719585	G	NA	17	0	17	69.000	3.335	0	0	0	17	0	ANKRD28	intronic	NA
RCC_T4--4	chr3:15719585	G	NA	31	0	31	67.129	5.812	0	0	0	31	0	ANKRD28	intronic	NA
RCC_T4--5	chr3:15719585	G	NA	26	0	26	65.885	9.534	0	0	0	26	0	ANKRD28	intronic	NA
RCC_T4--6	chr3:15719585	G	NA	14	0	14	69.143	1.791	0	0	0	14	0	ANKRD28	intronic	NA
RCC_T4--7	chr3:15719585	G	A	17	0.176	14	66.429	10.566	3	70.667	1.155	14	3	ANKRD28	intronic	NA
RCC_T4--GL	chr3:15719585	G	NA	50	0	50	68.300	4.858	0	0	0	50	0	ANKRD28	intronic	NA
RCC_T4--1	chr3:174974176	T	C	312	0.301	218	69.702	3.765	94	68.532	5.258	218	94	NAALADL2	intronic	NA
RCC_T4--2	chr3:174974176	T	C	332	0.265	244	68.955	4.340	88	68.659	3.744	244	88	NAALADL2	intronic	NA
RCC_T4--3	chr3:174974176	T	C	321	0.340	212	68.717	5.158	109	68.037	6.229	212	109	NAALADL2	intronic	NA
RCC_T4--4	chr3:174974176	T	C	313	0.166	260	68.912	4.413	52	69.365	2.856	260	52	NAALADL2	intronic	NA
RCC_T4--5	chr3:174974176	T	C	384	0.349	250	68.784	4.646	134	68.806	4.066	250	134	NAALADL2	intronic	NA
RCC_T4--6	chr3:174974176	T	C	383	0.376	239	68.820	5.197	144	68.299	6.080	239	144	NAALADL2	intronic	NA
RCC_T4--7	chr3:174974176	T	C	351	0.271	256	68.777	4.113	95	68.179	6.346	256	95	NAALADL2	intronic	NA
RCC_T4--GL	chr3:174974176	T	NA	380	0	380	69.003	4.158	0	0	0	380	0	NAALADL2	intronic	NA
RCC_T4--1	chr3:183210456	T	G	83	0.084	76	60.947	12.714	7	40.571	7.300	76	7	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:183210456	T	G	79	0.076	72	61.069	12.087	6	39.500	6.317	72	6	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:183210456	T	G	63	0.127	55	61.709	11.041	8	33.625	1.768	55	8	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:183210456	T	G	75	0.213	59	61.288	10.242	16	37.375	4.113	59	16	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:183210456	T	G	57	0.105	51	62.980	8.358	6	40.167	7.387	51	6	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:183210456	T	G	72	0.069	67	61.716	11.241	5	36.200	2.950	67	5	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:183210456	T	G	71	0.070	66	63.121	10.608	5	36.800	6.099	66	5	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:183210456	T	NA	60	0	60	62.567	10.835	0	0	0	60	0	KLHL6	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:194149631	C	T	102	0.255	76	69.079	3.517	26	69.077	2.348	76	26	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:194149631	C	T	121	0.215	95	68.832	4.166	26	69.923	2.189	95	26	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:194149631	C	T	116	0.310	78	68.474	5.232	36	68.778	4.100	78	36	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:194149631	C	T	156	0.186	127	68.685	4.287	29	68.000	6.803	127	29	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:194149631	C	T	107	0.346	70	68.186	6.149	37	68.405	3.004	70	37	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:194149631	C	T	144	0.076	133	69.068	4.749	11	66.091	11.371	133	11	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:194149631	C	T	117	0.231	90	68.111	6.401	27	66.185	10.656	90	27	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:194149631	C	NA	118	0	118	68.525	4.631	0	0	0	118	0	ATP13A3	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:197712734	C	T	70	0.157	59	69.085	3.313	11	68.455	1.695	59	11	LMLN	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:197712734	C	T	130	0.385	79	67.823	7.313	50	66.740	6.474	79	50	LMLN	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:197712734	C	NA	91	0	91	68.648	3.799	0	0	0	91	0	LMLN	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:197712734	C	T	107	0.187	87	68.931	3.507	20	68.100	3.712	87	20	LMLN	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:197712734	C	T	86	0.291	61	68.213	5.754	25	68.360	2.899	61	25	LMLN	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:197712734	C	T	114	0.026	111	68.964	3.233	3	59.667	6.110	111	3	LMLN	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:197712734	C	NA	98	0	98	68.612	4.083	0	0	0	98	0	LMLN	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:197712734	C	NA	116	0	116	67.888	6.583	0	0	0	116	0	LMLN	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:32795429	A	NA	44	0	44	69.295	3.092	0	0	0	44	0	CNOT10	intronic	NA
RCC_T4--2	chr3:32795429	A	NA	35	0	35	67.857	4.590	0	0	0	35	0	CNOT10	intronic	NA
RCC_T4--3	chr3:32795429	A	C	25	0.160	21	69.571	2.619	4	63.250	3.202	21	4	CNOT10	intronic	NA
RCC_T4--4	chr3:32795429	A	C	40	0.025	39	69.205	3.570	1	62.000	0.000	39	1	CNOT10	intronic	NA
RCC_T4--5	chr3:32795429	A	C	30	0.067	28	67.821	4.074	2	63.000	1.414	28	2	CNOT10	intronic	NA
RCC_T4--6	chr3:32795429	A	C	34	0.029	33	68.758	4.309	1	68.000	0.000	33	1	CNOT10	intronic	NA
RCC_T4--7	chr3:32795429	A	NA	23	0	23	66.652	8.462	0	0	0	23	0	CNOT10	intronic	NA
RCC_T4--GL	chr3:32795429	A	NA	49	0	49	68.041	7.220	0	0	0	49	0	CNOT10	intronic	NA
RCC_T4--1	chr3:32804157	C	NA	54	0	54	68.000	7.169	0	0	0	54	0	CNOT10	intronic	NA
RCC_T4--2	chr3:32804157	C	NA	65	0	65	68.415	4.268	0	0	0	65	0	CNOT10	intronic	NA
RCC_T4--3	chr3:32804157	C	A	45	0.022	44	68.091	6.287	1	49.000	0.000	44	1	CNOT10	intronic	NA
RCC_T4--4	chr3:32804157	C	NA	64	0	64	68.609	3.588	0	0	0	64	0	CNOT10	intronic	NA
RCC_T4--5	chr3:32804157	C	A	58	0.017	57	69.035	3.756	1	41.000	0.000	57	1	CNOT10	intronic	NA
RCC_T4--6	chr3:32804157	C	NA	46	0	46	69.696	2.707	0	0	0	46	0	CNOT10	intronic	NA
RCC_T4--7	chr3:32804157	C	A	37	0.108	33	68.727	5.039	4	69.250	1.708	33	4	CNOT10	intronic	NA
RCC_T4--GL	chr3:32804157	C	NA	65	0	65	68.123	5.894	0	0	0	65	0	CNOT10	intronic	NA
RCC_T4--1	chr3:37574760	C	NA	33	0	33	68.303	3.853	0	0	0	33	0	ITGA9	intronic	NA
RCC_T4--2	chr3:37574760	C	NA	34	0	34	67.324	4.971	0	0	0	34	0	ITGA9	intronic	NA
RCC_T4--3	chr3:37574760	C	A	31	0.129	27	66.000	7.545	4	63.000	7.703	27	4	ITGA9	intronic	NA
RCC_T4--4	chr3:37574760	C	NA	43	0	43	66.326	8.596	0	0	0	43	0	ITGA9	intronic	NA
RCC_T4--5	chr3:37574760	C	NA	35	0	35	65.829	9.259	0	0	0	35	0	ITGA9	intronic	NA
RCC_T4--6	chr3:37574760	C	NA	28	0	28	64.643	13.124	0	0	0	28	0	ITGA9	intronic	NA
RCC_T4--7	chr3:37574760	C	NA	37	0	37	66.892	7.538	0	0	0	37	0	ITGA9	intronic	NA
RCC_T4--GL	chr3:37574760	C	NA	50	0	50	66.040	7.938	0	0	0	50	0	ITGA9	intronic	NA
RCC_T4--1	chr3:41979534	C	NA	42	0	42	70.048	2.622	0	0	0	42	0	ULK4	intronic	NA
RCC_T4--2	chr3:41979534	C	A	36	0.028	35	68.743	3.212	1	71.000	0.000	35	1	ULK4	intronic	NA
RCC_T4--3	chr3:41979534	C	NA	17	0	17	67.706	4.413	0	0	0	17	0	ULK4	intronic	NA
RCC_T4--4	chr3:41979534	C	NA	37	0	37	69.892	2.675	0	0	0	37	0	ULK4	intronic	NA
RCC_T4--5	chr3:41979534	C	NA	35	0	35	68.543	3.665	0	0	0	35	0	ULK4	intronic	NA
RCC_T4--6	chr3:41979534	C	NA	40	0	40	69.325	3.605	0	0	0	40	0	ULK4	intronic	NA
RCC_T4--7	chr3:41979534	C	A	40	0.125	35	69.029	2.895	5	65.400	9.503	35	5	ULK4	intronic	NA
RCC_T4--GL	chr3:41979534	C	NA	49	0	49	68.469	6.235	0	0	0	49	0	ULK4	intronic	NA
RCC_T4--1	chr3:42448801	C	NA	16	0	16	66.688	5.199	0	0	0	16	0	LYZL4	UTR5	NA
RCC_T4--2	chr3:42448801	C	NA	15	0	15	68.867	3.399	0	0	0	15	0	LYZL4	UTR5	NA
RCC_T4--3	chr3:42448801	C	NA	20	0	20	65.550	6.589	0	0	0	20	0	LYZL4	UTR5	NA
RCC_T4--4	chr3:42448801	C	NA	19	0	19	65.895	10.011	0	0	0	19	0	LYZL4	UTR5	NA
RCC_T4--5	chr3:42448801	C	NA	32	0	32	65.156	7.162	0	0	0	32	0	LYZL4	UTR5	NA
RCC_T4--6	chr3:42448801	C	NA	36	0	36	67.528	3.917	0	0	0	36	0	LYZL4	UTR5	NA
RCC_T4--7	chr3:42448801	C	A	17	0.176	14	63.286	11.330	3	65.000	0.000	14	3	LYZL4	UTR5	NA
RCC_T4--GL	chr3:42448801	C	NA	37	0	37	67.162	4.381	0	0	0	37	0	LYZL4	UTR5	NA
RCC_T4--1	chr3:42777392	T	NA	21	0	21	66.571	6.874	0	0	0	21	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:42777392	T	NA	23	0	23	62.261	10.889	0	0	0	23	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:42777392	T	NA	17	0	17	67.235	3.011	0	0	0	17	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:42777392	T	NA	28	0	28	65.393	9.700	0	0	0	28	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:42777392	T	A	19	0.158	16	66.938	4.008	3	63.667	1.528	16	3	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:42777392	T	NA	19	0	19	64.211	9.384	0	0	0	19	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:42777392	T	NA	14	0	14	64.714	9.825	0	0	0	14	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:42777392	T	NA	36	0	36	63.667	9.261	0	0	0	36	0	CCDC13	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:42793388	G	NA	35	0	35	65.286	7.343	0	0	0	35	0	CCDC13	intronic	NA
RCC_T4--2	chr3:42793388	G	NA	33	0	32	63.969	10.117	0	0	0	32	0	CCDC13	intronic	NA
RCC_T4--3	chr3:42793388	G	NA	31	0	31	66.097	7.082	0	0	0	31	0	CCDC13	intronic	NA
RCC_T4--4	chr3:42793388	G	NA	42	0	42	65.167	6.424	0	0	0	42	0	CCDC13	intronic	NA
RCC_T4--5	chr3:42793388	G	NA	27	0	27	64.259	8.720	0	0	0	27	0	CCDC13	intronic	NA
RCC_T4--6	chr3:42793388	G	NA	42	0	42	65.381	8.163	0	0	0	42	0	CCDC13	intronic	NA
RCC_T4--7	chr3:42793388	G	A	34	0.118	29	64.448	7.249	4	65.750	0.500	29	4	CCDC13	intronic	NA
RCC_T4--GL	chr3:42793388	G	NA	46	0	46	64.630	7.669	0	0	0	46	0	CCDC13	intronic	NA
RCC_T4--1	chr3:44750889	G	NA	50	0	50	69.080	3.911	0	0	0	50	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--2	chr3:44750889	G	A	34	0.118	30	67.833	4.379	4	69.750	2.872	30	4	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--3	chr3:44750889	G	NA	26	0	26	68.500	6.784	0	0	0	26	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--4	chr3:44750889	G	NA	52	0	52	67.692	5.063	0	0	0	52	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--5	chr3:44750889	G	NA	39	0	39	68.462	3.619	0	0	0	39	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--6	chr3:44750889	G	NA	41	0	41	68.098	4.663	0	0	0	41	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--7	chr3:44750889	G	NA	42	0	42	68.381	3.261	0	0	0	42	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--GL	chr3:44750889	G	NA	67	0	67	67.269	4.842	0	0	0	67	0	ZNF35(dist=48606),ZNF502(dist=3246)	intergenic	NA
RCC_T4--1	chr3:46940576	A	NA	13	0	13	62.231	9.130	0	0	0	13	0	PTH1R	intronic	NA
RCC_T4--2	chr3:46940576	A	C	11	0.091	10	59.500	10.091	1	33.000	0.000	10	1	PTH1R	intronic	NA
RCC_T4--3	chr3:46940576	A	C	19	0.053	18	58.389	11.733	1	33.000	0.000	18	1	PTH1R	intronic	NA
RCC_T4--4	chr3:46940576	A	C	30	0.067	28	60.571	9.792	2	38.000	0.000	28	2	PTH1R	intronic	NA
RCC_T4--5	chr3:46940576	A	C	17	0.235	12	58.250	11.647	4	38.750	5.377	12	4	PTH1R	intronic	NA
RCC_T4--6	chr3:46940576	A	C	24	0.083	22	53.364	10.790	2	33.000	0.000	22	2	PTH1R	intronic	NA
RCC_T4--7	chr3:46940576	A	C	22	0.091	20	58.050	12.124	2	38.000	0.000	20	2	PTH1R	intronic	NA
RCC_T4--GL	chr3:46940576	A	NA	35	0	35	57.143	12.596	0	0	0	35	0	PTH1R	intronic	NA
RCC_T4--1	chr3:47038421	C	NA	38	0	38	65.342	7.129	0	0	0	38	0	NBEAL2	intronic	NA
RCC_T4--2	chr3:47038421	C	NA	34	0	34	65.324	8.078	0	0	0	34	0	NBEAL2	intronic	NA
RCC_T4--3	chr3:47038421	C	NA	28	0	28	64.179	7.893	0	0	0	28	0	NBEAL2	intronic	NA
RCC_T4--4	chr3:47038421	C	NA	47	0	47	63.851	8.151	0	0	0	47	0	NBEAL2	intronic	NA
RCC_T4--5	chr3:47038421	C	NA	46	0	46	62.478	10.187	0	0	0	46	0	NBEAL2	intronic	NA
RCC_T4--6	chr3:47038421	C	T	35	0.114	31	66.161	5.348	4	60.000	5.477	31	4	NBEAL2	intronic	NA
RCC_T4--7	chr3:47038421	C	NA	33	0	33	63.061	9.003	0	0	0	33	0	NBEAL2	intronic	NA
RCC_T4--GL	chr3:47038421	C	NA	59	0	59	64.458	10.388	0	0	0	59	0	NBEAL2	intronic	NA
RCC_T4--1	chr3:48680265	C	NA	70	0	70	65.386	6.350	0	0	0	70	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:48680265	C	T	66	0.106	59	62.237	10.653	7	59.714	8.220	59	7	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:48680265	C	NA	35	0	35	63.343	10.201	0	0	0	35	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:48680265	C	NA	56	0	56	65.089	5.998	0	0	0	56	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:48680265	C	NA	43	0	43	65.302	6.675	0	0	0	43	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:48680265	C	T	55	0.018	54	65.463	6.139	1	68.000	0.000	54	1	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:48680265	C	NA	35	0	35	67.543	5.762	0	0	0	35	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:48680265	C	NA	43	0	43	65.535	7.488	0	0	0	43	0	CELSR3	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:48692864	C	NA	29	0	29	63.310	9.212	0	0	0	29	0	CELSR3	intronic	NA
RCC_T4--2	chr3:48692864	C	NA	29	0	29	63.690	7.677	0	0	0	29	0	CELSR3	intronic	NA
RCC_T4--3	chr3:48692864	C	NA	20	0	20	64.350	6.133	0	0	0	20	0	CELSR3	intronic	NA
RCC_T4--4	chr3:48692864	C	NA	37	0	37	65.135	5.197	0	0	0	37	0	CELSR3	intronic	NA
RCC_T4--5	chr3:48692864	C	NA	23	0	23	65.913	5.393	0	0	0	23	0	CELSR3	intronic	NA
RCC_T4--6	chr3:48692864	C	NA	28	0	28	63.714	7.793	0	0	0	28	0	CELSR3	intronic	NA
RCC_T4--7	chr3:48692864	C	T	31	0.129	27	65.963	8.036	4	62.000	6.976	27	4	CELSR3	intronic	NA
RCC_T4--GL	chr3:48692864	C	NA	40	0	40	66.825	6.535	0	0	0	40	0	CELSR3	intronic	NA
RCC_T4--1	chr3:49869395	T	NA	74	0	74	65.257	8.788	0	0	0	74	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:49869395	T	NA	58	0	58	64.741	9.149	0	0	0	58	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:49869395	T	C	44	0.364	28	63.857	10.522	16	64.938	6.826	28	16	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:49869395	T	NA	66	0	65	64.477	8.764	0	0	0	65	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:49869395	T	C	65	0.015	64	64.047	9.779	1	33.000	0.000	64	1	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:49869395	T	NA	51	0	51	65.157	7.176	0	0	0	51	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:49869395	T	NA	57	0	57	66.175	6.690	0	0	0	57	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:49869395	T	NA	61	0	60	66.183	7.523	0	0	0	60	0	TRAIP	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:52018070	C	T	47	0.128	41	67.854	4.661	6	65.667	0.816	41	6	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--2	chr3:52018070	C	NA	42	0	42	65.595	8.605	0	0	0	42	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--3	chr3:52018070	C	NA	30	0	30	68.233	3.702	0	0	0	30	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--4	chr3:52018070	C	NA	31	0	30	65.867	4.023	0	0	0	30	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--5	chr3:52018070	C	NA	41	0	41	65.537	8.911	0	0	0	41	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--6	chr3:52018070	C	NA	26	0	26	67.962	2.863	0	0	0	26	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--7	chr3:52018070	C	NA	33	0	33	64.636	9.394	0	0	0	33	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--GL	chr3:52018070	C	NA	40	0	39	66.154	6.714	0	0	0	39	0	ABHD14A-ACY1	ncRNA_exonic	NA
RCC_T4--1	chr3:52396552	A	G	29	0.138	25	64.960	8.269	4	66.000	4.967	25	4	DNAH1	intronic	NA
RCC_T4--2	chr3:52396552	A	NA	29	0	29	69.793	3.427	0	0	0	29	0	DNAH1	intronic	NA
RCC_T4--3	chr3:52396552	A	NA	26	0	26	68.308	3.937	0	0	0	26	0	DNAH1	intronic	NA
RCC_T4--4	chr3:52396552	A	NA	41	0	41	66.244	8.443	0	0	0	41	0	DNAH1	intronic	NA
RCC_T4--5	chr3:52396552	A	NA	25	0	25	68.040	4.015	0	0	0	25	0	DNAH1	intronic	NA
RCC_T4--6	chr3:52396552	A	NA	35	0	35	67.486	4.736	0	0	0	35	0	DNAH1	intronic	NA
RCC_T4--7	chr3:52396552	A	NA	14	0	14	69.357	2.373	0	0	0	14	0	DNAH1	intronic	NA
RCC_T4--GL	chr3:52396552	A	NA	33	0	33	65.030	7.864	0	0	0	33	0	DNAH1	intronic	NA
RCC_T4--1	chr3:52551131	A	NA	22	0	22	64.818	7.588	0	0	0	22	0	STAB1	intronic	NA
RCC_T4--2	chr3:52551131	A	NA	17	0	17	65.176	8.833	0	0	0	17	0	STAB1	intronic	NA
RCC_T4--3	chr3:52551131	A	NA	15	0	15	67.933	2.549	0	0	0	15	0	STAB1	intronic	NA
RCC_T4--4	chr3:52551131	A	T	20	0.150	17	65.588	5.512	3	55.333	19.348	17	3	STAB1	intronic	NA
RCC_T4--5	chr3:52551131	A	NA	13	0	13	64.000	8.888	0	0	0	13	0	STAB1	intronic	NA
RCC_T4--6	chr3:52551131	A	NA	22	0	22	67.318	4.497	0	0	0	22	0	STAB1	intronic	NA
RCC_T4--7	chr3:52551131	A	NA	20	0	20	65.550	5.577	0	0	0	20	0	STAB1	intronic	NA
RCC_T4--GL	chr3:52551131	A	NA	36	0	36	65.306	7.638	0	0	0	36	0	STAB1	intronic	NA
RCC_T4--1	chr3:52558889	C	NA	30	0	30	66.700	5.682	0	0	0	30	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:52558889	C	NA	22	0	22	67.364	2.804	0	0	0	22	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:52558889	C	NA	24	0	24	65.833	6.799	0	0	0	24	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:52558889	C	NA	51	0	51	64.941	8.837	0	0	0	51	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:52558889	C	NA	36	0	36	65.750	5.818	0	0	0	36	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:52558889	C	NA	37	0	37	64.892	8.856	0	0	0	37	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:52558889	C	A	30	0.133	26	65.500	9.799	4	67.750	3.500	26	4	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:52558889	C	NA	35	0	34	67.824	7.461	0	0	0	34	0	NT5DC2	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:53263329	T	NA	35	0	35	64.886	4.234	0	0	0	35	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--2	chr3:53263329	T	NA	22	0	22	64.909	4.975	0	0	0	22	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--3	chr3:53263329	T	NA	20	0	20	66.050	4.628	0	0	0	20	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--4	chr3:53263329	T	NA	38	0	38	63.289	7.836	0	0	0	38	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--5	chr3:53263329	T	NA	31	0	31	62.710	9.449	0	0	0	31	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--6	chr3:53263329	T	NA	22	0	22	63.682	8.335	0	0	0	22	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--7	chr3:53263329	T	C	24	0.167	20	65.450	4.310	4	64.500	3.317	20	4	TKT	exonic	nonsynonymous_SNV
RCC_T4--GL	chr3:53263329	T	NA	38	0	38	64.895	7.587	0	0	0	38	0	TKT	exonic	nonsynonymous_SNV
RCC_T4--1	chr3:66449496	C	NA	18	0	18	69.222	2.756	0	0	0	18	0	LRIG1	intronic	NA
RCC_T4--2	chr3:66449496	C	NA	30	0	30	65.633	6.322	0	0	0	30	0	LRIG1	intronic	NA
RCC_T4--3	chr3:66449496	C	NA	35	0	35	68.486	3.697	0	0	0	35	0	LRIG1	intronic	NA
RCC_T4--4	chr3:66449496	C	NA	33	0	33	68.485	3.768	0	0	0	33	0	LRIG1	intronic	NA
RCC_T4--5	chr3:66449496	C	A	35	0.114	31	65.710	8.462	4	66.500	3.109	31	4	LRIG1	intronic	NA
RCC_T4--6	chr3:66449496	C	NA	22	0	22	67.500	6.069	0	0	0	22	0	LRIG1	intronic	NA
RCC_T4--7	chr3:66449496	C	NA	26	0	26	65.038	5.943	0	0	0	26	0	LRIG1	intronic	NA
RCC_T4--GL	chr3:66449496	C	NA	47	0	47	65.830	6.774	0	0	0	47	0	LRIG1	intronic	NA
RCC_T4--1	chr3:74185344	G	NA	30	0	30	66.300	4.786	0	0	0	30	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--2	chr3:74185344	G	NA	34	0	34	62.441	7.187	0	0	0	34	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--3	chr3:74185344	G	NA	22	0	22	64.273	8.282	0	0	0	22	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--4	chr3:74185344	G	A	22	0.182	18	64.889	4.364	4	67.000	2.944	18	4	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--5	chr3:74185344	G	NA	14	0	14	63.143	6.212	0	0	0	14	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--6	chr3:74185344	G	NA	14	0	14	62.429	8.671	0	0	0	14	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--7	chr3:74185344	G	NA	22	0	22	65.909	4.760	0	0	0	22	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--GL	chr3:74185344	G	NA	40	0	38	64.632	5.810	0	0	0	38	0	PDZRN3(dist=511272),CNTN3(dist=126378)	intergenic	NA
RCC_T4--1	chr3:8669357	A	C	25	0.040	23	65.391	7.482	1	36.000	0.000	23	1	SSUH2	intronic	NA
RCC_T4--2	chr3:8669357	A	C	17	0.235	13	59.385	12.183	4	34.500	1.732	13	4	SSUH2	intronic	NA
RCC_T4--3	chr3:8669357	A	NA	33	0	33	59.697	12.653	0	0	0	33	0	SSUH2	intronic	NA
RCC_T4--4	chr3:8669357	A	NA	20	0	19	52.684	13.013	0	0	0	19	0	SSUH2	intronic	NA
RCC_T4--5	chr3:8669357	A	NA	30	0	30	56.867	12.706	0	0	0	30	0	SSUH2	intronic	NA
RCC_T4--6	chr3:8669357	A	C	21	0.048	20	62.350	12.491	1	33.000	0.000	20	1	SSUH2	intronic	NA
RCC_T4--7	chr3:8669357	A	C	22	0.045	21	62.857	10.951	1	33.000	0.000	21	1	SSUH2	intronic	NA
RCC_T4--GL	chr3:8669357	A	NA	37	0	36	60.417	11.838	0	0	0	36	0	SSUH2	intronic	NA
RCC_T4--1	chr4:104495241	C	NA	37	0	37	67.162	4.981	0	0	0	37	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--2	chr4:104495241	C	NA	34	0	34	67.882	5.056	0	0	0	34	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--3	chr4:104495241	C	NA	48	0	48	66.021	6.988	0	0	0	48	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--4	chr4:104495241	C	A	46	0.109	41	66.512	6.357	5	58.200	13.989	41	5	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--5	chr4:104495241	C	NA	33	0	33	63.485	11.063	0	0	0	33	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--6	chr4:104495241	C	NA	43	0	43	65.884	8.553	0	0	0	43	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--7	chr4:104495241	C	NA	48	0	48	66.521	6.056	0	0	0	48	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--GL	chr4:104495241	C	NA	48	0	48	66.854	8.040	0	0	0	48	0	CENPE(dist=375675),TACR3(dist=15384)	intergenic	NA
RCC_T4--1	chr4:119239401	T	NA	24	0	24	70.042	2.368	0	0	0	24	0	PRSS12	intronic	NA
RCC_T4--2	chr4:119239401	T	NA	29	0	29	67.621	4.762	0	0	0	29	0	PRSS12	intronic	NA
RCC_T4--3	chr4:119239401	T	NA	20	0	20	69.900	3.059	0	0	0	20	0	PRSS12	intronic	NA
RCC_T4--4	chr4:119239401	T	NA	24	0	24	68.875	3.927	0	0	0	24	0	PRSS12	intronic	NA
RCC_T4--5	chr4:119239401	T	NA	28	0	28	69.821	2.932	0	0	0	28	0	PRSS12	intronic	NA
RCC_T4--6	chr4:119239401	T	C	31	0.194	25	67.440	5.253	6	69.333	2.582	25	6	PRSS12	intronic	NA
RCC_T4--7	chr4:119239401	T	NA	40	0	40	68.450	6.725	0	0	0	40	0	PRSS12	intronic	NA
RCC_T4--GL	chr4:119239401	T	NA	35	0	35	70.200	2.968	0	0	0	35	0	PRSS12	intronic	NA
RCC_T4--1	chr4:156850652	T	NA	63	0	63	69.016	2.612	0	0	0	63	0	CTSO	intronic	NA
RCC_T4--2	chr4:156850652	T	NA	70	0	70	67.100	5.097	0	0	0	70	0	CTSO	intronic	NA
RCC_T4--3	chr4:156850652	T	NA	48	0	48	68.250	4.787	0	0	0	48	0	CTSO	intronic	NA
RCC_T4--4	chr4:156850652	T	C	78	0.103	70	68.129	5.261	8	66.625	5.069	70	8	CTSO	intronic	NA
RCC_T4--5	chr4:156850652	T	NA	49	0	49	66.776	6.558	0	0	0	49	0	CTSO	intronic	NA
RCC_T4--6	chr4:156850652	T	NA	63	0	63	65.984	7.439	0	0	0	63	0	CTSO	intronic	NA
RCC_T4--7	chr4:156850652	T	NA	59	0	59	67.220	5.810	0	0	0	59	0	CTSO	intronic	NA
RCC_T4--GL	chr4:156850652	T	NA	81	0	81	68.099	4.633	0	0	0	81	0	CTSO	intronic	NA
RCC_T4--1	chr4:164186944	C	A	32	0.188	26	66.769	4.403	6	66.333	0.816	26	6	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--2	chr4:164186944	C	NA	17	0	17	61.176	11.679	0	0	0	17	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--3	chr4:164186944	C	NA	22	0	22	64.636	8.677	0	0	0	22	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--4	chr4:164186944	C	NA	28	0	27	66.519	6.296	0	0	0	27	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--5	chr4:164186944	C	NA	25	0	25	68.920	2.737	0	0	0	25	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--6	chr4:164186944	C	NA	19	0	19	65.632	8.617	0	0	0	19	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--7	chr4:164186944	C	NA	22	0	22	64.955	8.845	0	0	0	22	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--GL	chr4:164186944	C	NA	37	0	37	66.486	5.253	0	0	0	37	0	NAF1(dist=98871),NPY1R(dist=58173)	intergenic	NA
RCC_T4--1	chr4:187084133	G	NA	33	0	33	68.303	4.164	0	0	0	33	0	FAM149A	intronic	NA
RCC_T4--2	chr4:187084133	G	NA	37	0	37	68.622	4.809	0	0	0	37	0	FAM149A	intronic	NA
RCC_T4--3	chr4:187084133	G	T	17	0.235	13	65.385	8.884	4	66.750	2.872	13	4	FAM149A	intronic	NA
RCC_T4--4	chr4:187084133	G	NA	33	0	33	68.242	3.536	0	0	0	33	0	FAM149A	intronic	NA
RCC_T4--5	chr4:187084133	G	NA	31	0	31	66.000	5.663	0	0	0	31	0	FAM149A	intronic	NA
RCC_T4--6	chr4:187084133	G	NA	24	0	24	67.167	3.908	0	0	0	24	0	FAM149A	intronic	NA
RCC_T4--7	chr4:187084133	G	NA	34	0	34	68.000	3.618	0	0	0	34	0	FAM149A	intronic	NA
RCC_T4--GL	chr4:187084133	G	NA	42	0	42	67.214	5.779	0	0	0	42	0	FAM149A	intronic	NA
RCC_T4--1	chr4:1980526	G	NA	42	0	42	64.024	8.640	0	0	0	42	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--2	chr4:1980526	G	NA	39	0	39	65.000	7.237	0	0	0	39	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--3	chr4:1980526	G	NA	33	0	33	64.030	5.053	0	0	0	33	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--4	chr4:1980526	G	A	33	0.121	29	63.483	7.119	4	57.500	8.185	29	4	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--5	chr4:1980526	G	NA	64	0	64	62.656	8.767	0	0	0	64	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--6	chr4:1980526	G	NA	52	0	52	62.942	9.997	0	0	0	52	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--7	chr4:1980526	G	NA	36	0	36	62.083	11.175	0	0	0	36	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr4:1980526	G	NA	51	0	51	66.353	4.816	0	0	0	51	0	WHSC1	exonic	nonsynonymous_SNV
RCC_T4--1	chr4:3134581	G	T	241	0.261	178	68.399	5.748	63	68.127	4.917	178	63	HTT	exonic	synonymous_SNV
RCC_T4--2	chr4:3134581	G	T	260	0.273	189	68.751	4.425	71	67.493	4.459	189	71	HTT	exonic	synonymous_SNV
RCC_T4--3	chr4:3134581	G	T	244	0.205	194	67.753	5.310	50	66.740	5.454	194	50	HTT	exonic	synonymous_SNV
RCC_T4--4	chr4:3134581	G	T	262	0.168	218	67.505	6.370	44	67.795	5.708	218	44	HTT	exonic	synonymous_SNV
RCC_T4--5	chr4:3134581	G	T	288	0.299	202	67.436	5.873	86	67.442	4.573	202	86	HTT	exonic	synonymous_SNV
RCC_T4--6	chr4:3134581	G	T	244	0.033	235	66.319	7.721	8	67.000	3.625	235	8	HTT	exonic	synonymous_SNV
RCC_T4--7	chr4:3134581	G	T	281	0.345	184	67.701	5.765	97	67.536	4.299	184	97	HTT	exonic	synonymous_SNV
RCC_T4--GL	chr4:3134581	G	NA	275	0	274	67.493	6.221	0	0	0	274	0	HTT	exonic	synonymous_SNV
RCC_T4--1	chr4:54324753	T	C	57	0.351	37	68.919	2.966	20	69.350	2.720	37	20	FIP1L1	intronic	NA
RCC_T4--2	chr4:54324753	T	C	64	0.297	45	68.800	3.894	19	67.842	4.207	45	19	FIP1L1	intronic	NA
RCC_T4--3	chr4:54324753	T	C	56	0.250	41	67.854	5.503	14	70.143	2.852	41	14	FIP1L1	intronic	NA
RCC_T4--4	chr4:54324753	T	C	73	0.096	66	68.697	5.533	7	70.143	2.410	66	7	FIP1L1	intronic	NA
RCC_T4--5	chr4:54324753	T	C	79	0.304	55	70.073	2.821	24	69.667	2.548	55	24	FIP1L1	intronic	NA
RCC_T4--6	chr4:54324753	T	C	72	0.403	43	69.163	3.511	29	67.931	4.682	43	29	FIP1L1	intronic	NA
RCC_T4--7	chr4:54324753	T	C	84	0.357	54	69.481	3.243	30	69.700	3.715	54	30	FIP1L1	intronic	NA
RCC_T4--GL	chr4:54324753	T	NA	75	0	75	69.320	3.473	0	0	0	75	0	FIP1L1	intronic	NA
RCC_T4--1	chr4:56322254	G	C	62	0.081	57	64.088	9.657	5	66.400	1.517	57	5	CLOCK	intronic	NA
RCC_T4--2	chr4:56322254	G	C	61	0.131	53	62.849	9.433	8	64.875	1.727	53	8	CLOCK	intronic	NA
RCC_T4--3	chr4:56322254	G	NA	40	0	39	65.128	7.053	0	0	0	39	0	CLOCK	intronic	NA
RCC_T4--4	chr4:56322254	G	C	54	0.056	51	64.235	7.683	3	64.333	2.082	51	3	CLOCK	intronic	NA
RCC_T4--5	chr4:56322254	G	C	74	0.014	73	64.575	8.877	1	64.000	0.000	73	1	CLOCK	intronic	NA
RCC_T4--6	chr4:56322254	G	C	78	0.038	75	63.467	9.357	3	64.000	3.464	75	3	CLOCK	intronic	NA
RCC_T4--7	chr4:56322254	G	C	67	0.090	61	64.115	8.645	6	65.833	2.229	61	6	CLOCK	intronic	NA
RCC_T4--GL	chr4:56322254	G	NA	59	0	58	64.603	6.702	0	0	0	58	0	CLOCK	intronic	NA
RCC_T4--1	chr4:56877936	T	NA	75	0	75	69.573	3.572	0	0	0	75	0	CEP135	intronic	NA
RCC_T4--2	chr4:56877936	T	NA	100	0	100	68.730	3.472	0	0	0	100	0	CEP135	intronic	NA
RCC_T4--3	chr4:56877936	T	A	65	0.185	53	69.415	3.243	12	69.167	3.614	53	12	CEP135	intronic	NA
RCC_T4--4	chr4:56877936	T	NA	97	0	97	68.423	4.064	0	0	0	97	0	CEP135	intronic	NA
RCC_T4--5	chr4:56877936	T	NA	90	0	90	69.411	3.550	0	0	0	90	0	CEP135	intronic	NA
RCC_T4--6	chr4:56877936	T	NA	106	0	106	68.396	4.589	0	0	0	106	0	CEP135	intronic	NA
RCC_T4--7	chr4:56877936	T	NA	75	0	75	68.293	5.462	0	0	0	75	0	CEP135	intronic	NA
RCC_T4--GL	chr4:56877936	T	NA	82	0	82	69.061	4.495	0	0	0	82	0	CEP135	intronic	NA
RCC_T4--1	chr4:74464329	C	T	36	0.139	31	66.645	6.560	5	64.600	4.722	31	5	RASSF6	intronic	NA
RCC_T4--2	chr4:74464329	C	NA	26	0	26	67.038	4.450	0	0	0	26	0	RASSF6	intronic	NA
RCC_T4--3	chr4:74464329	C	T	26	0.038	25	67.800	4.761	1	39.000	0.000	25	1	RASSF6	intronic	NA
RCC_T4--4	chr4:74464329	C	NA	35	0	35	64.371	9.629	0	0	0	35	0	RASSF6	intronic	NA
RCC_T4--5	chr4:74464329	C	NA	32	0	32	66.844	8.219	0	0	0	32	0	RASSF6	intronic	NA
RCC_T4--6	chr4:74464329	C	NA	40	0	40	66.000	8.884	0	0	0	40	0	RASSF6	intronic	NA
RCC_T4--7	chr4:74464329	C	NA	44	0	44	68.091	3.703	0	0	0	44	0	RASSF6	intronic	NA
RCC_T4--GL	chr4:74464329	C	NA	35	0	35	66.029	8.315	0	0	0	35	0	RASSF6	intronic	NA
RCC_T4--1	chr5:102364806	C	NA	34	0	34	69.735	3.241	0	0	0	34	0	PAM	UTR3	NA
RCC_T4--2	chr5:102364806	C	T	56	0.107	50	67.880	3.578	6	68.333	3.141	50	6	PAM	UTR3	NA
RCC_T4--3	chr5:102364806	C	NA	41	0	41	69.049	2.854	0	0	0	41	0	PAM	UTR3	NA
RCC_T4--4	chr5:102364806	C	NA	54	0	53	68.264	3.563	0	0	0	53	0	PAM	UTR3	NA
RCC_T4--5	chr5:102364806	C	NA	36	0	36	68.778	4.264	0	0	0	36	0	PAM	UTR3	NA
RCC_T4--6	chr5:102364806	C	NA	49	0	49	66.286	6.265	0	0	0	49	0	PAM	UTR3	NA
RCC_T4--7	chr5:102364806	C	NA	51	0	51	67.961	4.669	0	0	0	51	0	PAM	UTR3	NA
RCC_T4--GL	chr5:102364806	C	NA	50	0	50	67.300	4.896	0	0	0	50	0	PAM	UTR3	NA
RCC_T4--1	chr5:107061887	A	NA	60	0	60	68.883	3.897	0	0	0	60	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--2	chr5:107061887	A	NA	75	0	75	67.093	5.905	0	0	0	75	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--3	chr5:107061887	A	NA	71	0	71	68.366	4.539	0	0	0	71	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--4	chr5:107061887	A	NA	60	0	60	68.700	5.009	0	0	0	60	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--5	chr5:107061887	A	NA	67	0	67	67.552	6.983	0	0	0	67	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--6	chr5:107061887	A	NA	85	0	85	67.847	5.317	0	0	0	85	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--7	chr5:107061887	A	T	80	0.350	52	68.288	5.713	28	69.464	3.168	52	28	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--GL	chr5:107061887	A	NA	82	0	82	68.805	3.441	0	0	0	82	0	EFNA5(dist=55291),FBXL17(dist=132847)	intergenic	NA
RCC_T4--1	chr5:140537766	G	T	150	0.007	149	64.174	8.999	1	33.000	0.000	149	1	PCDHB17	ncRNA_exonic	NA
RCC_T4--2	chr5:140537766	G	NA	146	0	146	63.479	9.144	0	0	0	146	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--3	chr5:140537766	G	NA	122	0	120	63.517	9.777	0	0	0	120	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--4	chr5:140537766	G	NA	131	0	131	63.931	8.712	0	0	0	131	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--5	chr5:140537766	G	NA	180	0	180	63.594	9.782	0	0	0	180	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--6	chr5:140537766	G	T	142	0.246	107	64.804	7.678	35	64.686	5.444	107	35	PCDHB17	ncRNA_exonic	NA
RCC_T4--7	chr5:140537766	G	NA	153	0	153	64.216	9.506	0	0	0	153	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--GL	chr5:140537766	G	NA	141	0	141	65.234	7.335	0	0	0	141	0	PCDHB17	ncRNA_exonic	NA
RCC_T4--1	chr5:147477351	T	A	33	0.061	31	70.484	2.434	2	65.000	4.243	31	2	SPINK5	intronic	NA
RCC_T4--2	chr5:147477351	T	A	51	0.176	42	69.976	3.080	9	64.222	3.308	42	9	SPINK5	intronic	NA
RCC_T4--3	chr5:147477351	T	A	35	0.057	33	70.364	2.205	2	65.000	4.243	33	2	SPINK5	intronic	NA
RCC_T4--4	chr5:147477351	T	A	54	0.056	51	70.020	2.709	3	59.000	10.817	51	3	SPINK5	intronic	NA
RCC_T4--5	chr5:147477351	T	A	45	0.044	43	69.791	2.315	2	65.000	0.000	43	2	SPINK5	intronic	NA
RCC_T4--6	chr5:147477351	T	A	53	0.075	49	69.592	3.135	4	61.500	4.123	49	4	SPINK5	intronic	NA
RCC_T4--7	chr5:147477351	T	A	58	0.034	56	68.696	5.621	2	66.500	2.121	56	2	SPINK5	intronic	NA
RCC_T4--GL	chr5:147477351	T	NA	51	0	51	69.843	3.029	0	0	0	51	0	SPINK5	intronic	NA
RCC_T4--1	chr5:156376806	G	NA	54	0	54	67.833	5.161	0	0	0	54	0	TIMD4	intronic	NA
RCC_T4--2	chr5:156376806	G	NA	45	0	45	68.222	3.837	0	0	0	45	0	TIMD4	intronic	NA
RCC_T4--3	chr5:156376806	G	A	33	0.182	27	66.815	5.129	6	62.667	7.474	27	6	TIMD4	intronic	NA
RCC_T4--4	chr5:156376806	G	NA	40	0	39	65.615	9.244	0	0	0	39	0	TIMD4	intronic	NA
RCC_T4--5	chr5:156376806	G	NA	57	0	57	66.842	7.968	0	0	0	57	0	TIMD4	intronic	NA
RCC_T4--6	chr5:156376806	G	NA	33	0	33	67.303	4.700	0	0	0	33	0	TIMD4	intronic	NA
RCC_T4--7	chr5:156376806	G	NA	45	0	45	66.400	8.167	0	0	0	45	0	TIMD4	intronic	NA
RCC_T4--GL	chr5:156376806	G	NA	35	0	35	68.657	4.228	0	0	0	35	0	TIMD4	intronic	NA
RCC_T4--1	chr5:159834495	G	NA	69	0	69	68.174	5.289	0	0	0	69	0	SLU7	exonic	synonymous_SNV
RCC_T4--2	chr5:159834495	G	NA	123	0	123	67.301	6.054	0	0	0	123	0	SLU7	exonic	synonymous_SNV
RCC_T4--3	chr5:159834495	G	NA	89	0	89	67.809	5.389	0	0	0	89	0	SLU7	exonic	synonymous_SNV
RCC_T4--4	chr5:159834495	G	NA	112	0	111	67.766	6.074	0	0	0	111	0	SLU7	exonic	synonymous_SNV
RCC_T4--5	chr5:159834495	G	NA	85	0	85	67.965	3.965	0	0	0	85	0	SLU7	exonic	synonymous_SNV
RCC_T4--6	chr5:159834495	G	A	106	0.264	78	67.385	5.372	28	66.643	3.880	78	28	SLU7	exonic	synonymous_SNV
RCC_T4--7	chr5:159834495	G	NA	106	0	106	69.066	3.196	0	0	0	106	0	SLU7	exonic	synonymous_SNV
RCC_T4--GL	chr5:159834495	G	NA	125	0	125	66.872	6.437	0	0	0	125	0	SLU7	exonic	synonymous_SNV
RCC_T4--1	chr5:16675004	G	A	306	0.003	305	66.866	7.597	1	68.000	0.000	305	1	MYO10	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:16675004	G	A	297	0.279	214	66.369	6.709	83	66.193	6.855	214	83	MYO10	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:16675004	G	NA	288	0	288	66.163	7.615	0	0	0	288	0	MYO10	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:16675004	G	NA	279	0	279	66.878	6.306	0	0	0	279	0	MYO10	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:16675004	G	NA	339	0	339	66.749	7.283	0	0	0	339	0	MYO10	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:16675004	G	NA	347	0	347	66.827	6.608	0	0	0	347	0	MYO10	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:16675004	G	A	269	0.004	267	66.824	6.710	1	41.000	0.000	267	1	MYO10	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:16675004	G	NA	270	0	270	66.522	7.721	0	0	0	270	0	MYO10	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:175998265	G	NA	45	0	45	64.600	9.661	0	0	0	45	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:175998265	G	NA	55	0	55	66.618	5.880	0	0	0	55	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:175998265	G	NA	43	0	43	65.907	6.575	0	0	0	43	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:175998265	G	NA	58	0	58	65.517	8.323	0	0	0	58	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:175998265	G	NA	52	0	52	64.712	7.706	0	0	0	52	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:175998265	G	NA	52	0	52	67.654	6.265	0	0	0	52	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:175998265	G	A	52	0.115	46	66.000	8.011	6	62.333	3.502	46	6	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:175998265	G	NA	50	0	50	66.320	4.959	0	0	0	50	0	CDHR2	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:177642392	C	T	34	0.147	29	66.414	7.758	5	62.600	6.504	29	5	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:177642392	C	NA	29	0	29	64.724	9.779	0	0	0	29	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:177642392	C	NA	12	0	12	65.333	5.193	0	0	0	12	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:177642392	C	NA	29	0	29	67.655	3.309	0	0	0	29	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:177642392	C	NA	28	0	28	64.429	9.163	0	0	0	28	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:177642392	C	NA	16	0	16	66.688	4.949	0	0	0	16	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:177642392	C	NA	30	0	30	64.000	9.566	0	0	0	30	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:177642392	C	NA	33	0	33	66.333	4.998	0	0	0	33	0	PHYKPL	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:179684802	C	NA	35	0	35	66.857	7.643	0	0	0	35	0	MAPK9	intronic	NA
RCC_T4--2	chr5:179684802	C	NA	43	0	43	66.116	7.841	0	0	0	43	0	MAPK9	intronic	NA
RCC_T4--3	chr5:179684802	C	NA	26	0	26	66.962	8.282	0	0	0	26	0	MAPK9	intronic	NA
RCC_T4--4	chr5:179684802	C	NA	30	0	30	68.733	2.766	0	0	0	30	0	MAPK9	intronic	NA
RCC_T4--5	chr5:179684802	C	A	37	0.108	33	67.212	7.105	4	69.750	1.708	33	4	MAPK9	intronic	NA
RCC_T4--6	chr5:179684802	C	NA	35	0	35	68.171	7.015	0	0	0	35	0	MAPK9	intronic	NA
RCC_T4--7	chr5:179684802	C	NA	33	0	33	66.909	7.472	0	0	0	33	0	MAPK9	intronic	NA
RCC_T4--GL	chr5:179684802	C	NA	35	0	35	66.943	8.321	0	0	0	35	0	MAPK9	intronic	NA
RCC_T4--1	chr5:19483481	G	NA	88	0	88	66.477	5.847	0	0	0	88	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:19483481	G	NA	67	0	67	65.269	8.125	0	0	0	67	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:19483481	G	NA	81	0	81	66.333	7.265	0	0	0	81	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:19483481	G	NA	82	0	82	67.244	4.913	0	0	0	82	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:19483481	G	NA	55	0	55	66.673	5.037	0	0	0	55	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:19483481	G	T	120	0.308	83	66.072	6.882	37	63.459	10.787	83	37	CDH18	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:19483481	G	NA	67	0	67	65.821	6.617	0	0	0	67	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:19483481	G	NA	73	0	73	65.849	7.838	0	0	0	73	0	CDH18	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:35954509	A	C	36	0.028	35	60.114	10.462	1	47.000	0.000	35	1	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:35954509	A	C	33	0.182	27	62.222	10.051	6	36.333	2.582	27	6	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:35954509	A	C	37	0.270	26	58.923	9.234	10	38.900	6.557	26	10	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:35954509	A	C	30	0.067	27	58.778	10.500	2	39.500	9.192	27	2	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:35954509	A	C	31	0.161	26	59.269	9.849	5	36.200	2.950	26	5	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:35954509	A	C	37	0.135	31	61.258	9.158	5	34.000	2.236	31	5	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:35954509	A	C	48	0.104	42	59.214	11.345	5	37.800	5.357	42	5	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:35954509	A	NA	38	0	37	59.270	7.563	0	0	0	37	0	UGT3A1	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:40972666	G	NA	316	0	316	66.709	6.857	0	0	0	316	0	C7	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:40972666	G	NA	366	0	366	66.648	6.946	0	0	0	366	0	C7	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:40972666	G	NA	290	0	290	67.538	5.475	0	0	0	290	0	C7	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:40972666	G	NA	377	0	377	66.706	6.440	0	0	0	377	0	C7	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:40972666	G	NA	378	0	378	67.656	5.592	0	0	0	378	0	C7	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:40972666	G	NA	354	0	354	66.941	6.879	0	0	0	354	0	C7	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:40972666	G	A	317	0.312	218	67.661	5.816	99	67.747	5.416	218	99	C7	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:40972666	G	NA	302	0	302	67.315	6.005	0	0	0	302	0	C7	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:44310471	C	NA	37	0	37	70.189	2.717	0	0	0	37	0	FGF10	intronic	NA
RCC_T4--2	chr5:44310471	C	NA	27	0	27	68.556	3.994	0	0	0	27	0	FGF10	intronic	NA
RCC_T4--3	chr5:44310471	C	NA	30	0	30	69.167	2.925	0	0	0	30	0	FGF10	intronic	NA
RCC_T4--4	chr5:44310471	C	NA	43	0	43	66.907	6.686	0	0	0	43	0	FGF10	intronic	NA
RCC_T4--5	chr5:44310471	C	NA	28	0	28	67.536	7.341	0	0	0	28	0	FGF10	intronic	NA
RCC_T4--6	chr5:44310471	C	NA	39	0	39	69.256	3.740	0	0	0	39	0	FGF10	intronic	NA
RCC_T4--7	chr5:44310471	C	A	33	0.515	16	67.812	4.167	17	69.765	2.796	16	17	FGF10	intronic	NA
RCC_T4--GL	chr5:44310471	C	NA	39	0	39	68.872	3.443	0	0	0	39	0	FGF10	intronic	NA
RCC_T4--1	chr5:52193418	C	NA	29	0	29	69.552	2.935	0	0	0	29	0	ITGA1	intronic	NA
RCC_T4--2	chr5:52193418	C	A	41	0.073	38	67.447	6.737	3	64.667	2.309	38	3	ITGA1	intronic	NA
RCC_T4--3	chr5:52193418	C	A	43	0.093	39	68.205	4.384	4	64.500	3.000	39	4	ITGA1	intronic	NA
RCC_T4--4	chr5:52193418	C	A	37	0.027	36	68.861	3.878	1	66.000	0.000	36	1	ITGA1	intronic	NA
RCC_T4--5	chr5:52193418	C	A	40	0.150	34	65.412	9.349	6	59.000	12.837	34	6	ITGA1	intronic	NA
RCC_T4--6	chr5:52193418	C	A	45	0.111	40	68.350	6.407	5	64.000	2.915	40	5	ITGA1	intronic	NA
RCC_T4--7	chr5:52193418	C	A	35	0.086	32	65.625	9.648	3	65.000	0.000	32	3	ITGA1	intronic	NA
RCC_T4--GL	chr5:52193418	C	NA	41	0	41	68.463	5.564	0	0	0	41	0	ITGA1	intronic	NA
RCC_T4--1	chr5:55407641	G	NA	74	0	74	68.122	5.522	0	0	0	74	0	ANKRD55	intronic	NA
RCC_T4--2	chr5:55407641	G	NA	85	0	85	66.718	6.080	0	0	0	85	0	ANKRD55	intronic	NA
RCC_T4--3	chr5:55407641	G	NA	66	0	66	68.015	3.627	0	0	0	66	0	ANKRD55	intronic	NA
RCC_T4--4	chr5:55407641	G	NA	78	0	78	67.385	4.210	0	0	0	78	0	ANKRD55	intronic	NA
RCC_T4--5	chr5:55407641	G	NA	85	0	85	68.424	3.424	0	0	0	85	0	ANKRD55	intronic	NA
RCC_T4--6	chr5:55407641	G	NA	92	0	92	67.587	4.517	0	0	0	92	0	ANKRD55	intronic	NA
RCC_T4--7	chr5:55407641	G	A	71	0.169	59	65.864	8.251	12	69.250	2.050	59	12	ANKRD55	intronic	NA
RCC_T4--GL	chr5:55407641	G	NA	75	0	75	67.760	5.826	0	0	0	75	0	ANKRD55	intronic	NA
RCC_T4--1	chr5:56718645	G	NA	28	0	28	65.607	6.983	0	0	0	28	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--2	chr5:56718645	G	NA	34	0	34	66.794	5.110	0	0	0	34	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--3	chr5:56718645	G	T	28	0.143	24	65.750	8.007	4	62.000	5.477	24	4	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--4	chr5:56718645	G	NA	27	0	27	65.926	7.539	0	0	0	27	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--5	chr5:56718645	G	NA	22	0	22	66.000	8.674	0	0	0	22	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--6	chr5:56718645	G	NA	14	0	14	67.071	10.073	0	0	0	14	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--7	chr5:56718645	G	NA	28	0	28	65.071	6.520	0	0	0	28	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--GL	chr5:56718645	G	NA	39	0	39	67.667	4.579	0	0	0	39	0	GPBP1(dist=158139),ACTBL2(dist=57198)	intergenic	NA
RCC_T4--1	chr5:64077814	C	T	117	0.222	91	67.824	5.124	26	67.269	5.752	91	26	CWC27	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:64077814	C	T	111	0.279	80	67.800	4.995	31	65.806	7.409	80	31	CWC27	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:64077814	C	T	153	0.307	106	66.264	7.860	47	66.936	5.538	106	47	CWC27	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:64077814	C	T	156	0.199	125	66.528	6.913	31	67.742	5.440	125	31	CWC27	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:64077814	C	T	177	0.288	126	67.865	5.532	51	64.824	8.641	126	51	CWC27	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:64077814	C	T	180	0.028	175	67.926	4.645	5	70.800	1.095	175	5	CWC27	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:64077814	C	T	143	0.343	94	67.415	5.593	49	67.184	6.679	94	49	CWC27	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:64077814	C	NA	165	0	165	67.836	4.079	0	0	0	165	0	CWC27	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:70857973	C	NA	20	0	20	67.050	6.022	0	0	0	20	0	BDP1	intronic	NA
RCC_T4--2	chr5:70857973	C	NA	29	0	29	68.310	3.253	0	0	0	29	0	BDP1	intronic	NA
RCC_T4--3	chr5:70857973	C	NA	31	0	31	64.032	10.830	0	0	0	31	0	BDP1	intronic	NA
RCC_T4--4	chr5:70857973	C	NA	36	0	36	67.111	4.534	0	0	0	36	0	BDP1	intronic	NA
RCC_T4--5	chr5:70857973	C	NA	34	0	34	66.118	8.445	0	0	0	34	0	BDP1	intronic	NA
RCC_T4--6	chr5:70857973	C	T	34	0.235	23	67.783	6.324	8	63.375	6.802	23	8	BDP1	intronic	NA
RCC_T4--7	chr5:70857973	C	NA	26	0	26	68.846	2.461	0	0	0	26	0	BDP1	intronic	NA
RCC_T4--GL	chr5:70857973	C	NA	38	0	38	66.526	8.986	0	0	0	38	0	BDP1	intronic	NA
RCC_T4--1	chr5:7520902	A	T	93	0.247	70	66.971	5.164	23	68.217	4.101	70	23	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:7520902	A	T	81	0.383	50	67.180	5.819	31	67.581	3.557	50	31	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:7520902	A	T	68	0.412	39	66.513	4.071	28	65.571	7.758	39	28	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:7520902	A	T	78	0.167	64	66.203	6.157	13	64.538	9.043	64	13	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:7520902	A	T	78	0.269	57	67.772	4.264	21	66.429	3.906	57	21	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:7520902	A	T	81	0.049	77	67.208	5.715	4	64.500	10.661	77	4	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:7520902	A	T	74	0.189	60	67.267	5.259	14	68.286	3.024	60	14	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:7520902	A	NA	70	0	70	66.971	4.410	0	0	0	70	0	ADCY2	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:7782336	C	NA	42	0	42	66.690	4.826	0	0	0	42	0	ADCY2	intronic	NA
RCC_T4--2	chr5:7782336	C	A	31	0.129	27	64.630	5.070	4	62.000	5.944	27	4	ADCY2	intronic	NA
RCC_T4--3	chr5:7782336	C	NA	31	0	31	63.000	10.964	0	0	0	31	0	ADCY2	intronic	NA
RCC_T4--4	chr5:7782336	C	NA	36	0	36	62.583	11.850	0	0	0	36	0	ADCY2	intronic	NA
RCC_T4--5	chr5:7782336	C	NA	32	0	32	65.156	8.053	0	0	0	32	0	ADCY2	intronic	NA
RCC_T4--6	chr5:7782336	C	NA	30	0	30	61.433	9.747	0	0	0	30	0	ADCY2	intronic	NA
RCC_T4--7	chr5:7782336	C	A	39	0.026	38	65.211	6.960	1	38.000	0.000	38	1	ADCY2	intronic	NA
RCC_T4--GL	chr5:7782336	C	NA	41	0	41	64.756	9.914	0	0	0	41	0	ADCY2	intronic	NA
RCC_T4--1	chr5:864652	C	NA	59	0	58	65.724	7.031	0	0	0	58	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--2	chr5:864652	C	NA	51	0	51	64.647	7.573	0	0	0	51	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--3	chr5:864652	C	NA	45	0	44	64.614	7.336	0	0	0	44	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--4	chr5:864652	C	A	44	0.114	39	62.077	11.167	5	68.800	2.168	39	5	BRD9	exonic	nonsynonymous_SNV
RCC_T4--5	chr5:864652	C	A	56	0.018	55	63.073	9.805	1	33.000	0.000	55	1	BRD9	exonic	nonsynonymous_SNV
RCC_T4--6	chr5:864652	C	NA	56	0	56	66.125	7.570	0	0	0	56	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--7	chr5:864652	C	NA	60	0	60	66.350	3.888	0	0	0	60	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--GL	chr5:864652	C	NA	41	0	41	64.951	8.535	0	0	0	41	0	BRD9	exonic	nonsynonymous_SNV
RCC_T4--1	chr5:92604181	C	NA	22	0	22	64.045	9.276	0	0	0	22	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--2	chr5:92604181	C	NA	26	0	25	61.360	11.169	0	0	0	25	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--3	chr5:92604181	C	T	22	0.182	18	61.833	11.331	4	61.500	5.972	18	4	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--4	chr5:92604181	C	NA	25	0	25	64.560	8.382	0	0	0	25	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--5	chr5:92604181	C	NA	22	0	22	64.455	8.314	0	0	0	22	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--6	chr5:92604181	C	NA	21	0	21	60.762	10.416	0	0	0	21	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--7	chr5:92604181	C	NA	24	0	24	65.667	8.736	0	0	0	24	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--GL	chr5:92604181	C	NA	40	0	40	61.875	10.917	0	0	0	40	0	ARRDC3-AS1(dist=1887649),NR2F1-AS1(dist=140881)	intergenic	NA
RCC_T4--1	chr6:100023789	G	A	49	0.122	43	67.419	8.030	6	65.333	5.125	43	6	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--2	chr6:100023789	G	NA	26	0	26	69.038	4.703	0	0	0	26	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--3	chr6:100023789	G	NA	41	0	41	65.463	9.244	0	0	0	41	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--4	chr6:100023789	G	NA	57	0	57	68.263	5.146	0	0	0	57	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--5	chr6:100023789	G	NA	44	0	44	68.250	4.210	0	0	0	44	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--6	chr6:100023789	G	NA	54	0	54	68.463	6.621	0	0	0	54	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--7	chr6:100023789	G	NA	70	0	70	67.800	5.699	0	0	0	70	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--GL	chr6:100023789	G	NA	35	0	35	65.857	8.332	0	0	0	35	0	CCNC(dist=7099),PRDM13(dist=30861)	intergenic	NA
RCC_T4--1	chr6:108325989	C	NA	69	0	69	67.217	5.046	0	0	0	69	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--2	chr6:108325989	C	NA	41	0	41	64.195	6.878	0	0	0	41	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--3	chr6:108325989	C	A	48	0.125	42	64.595	8.067	6	65.167	3.971	42	6	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--4	chr6:108325989	C	NA	40	0	40	66.200	4.496	0	0	0	40	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--5	chr6:108325989	C	NA	49	0	49	65.184	8.131	0	0	0	49	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--6	chr6:108325989	C	NA	61	0	61	65.213	6.967	0	0	0	61	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--7	chr6:108325989	C	NA	45	0	45	67.933	3.744	0	0	0	45	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--GL	chr6:108325989	C	NA	50	0	50	67.020	5.145	0	0	0	50	0	SEC63(dist=46507),OSTM1(dist=36624)	intergenic	NA
RCC_T4--1	chr6:109770879	C	NA	61	0	61	65.902	7.115	0	0	0	61	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:109770879	C	NA	39	0	39	65.154	6.957	0	0	0	39	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:109770879	C	T	36	0.139	31	63.613	10.471	5	66.200	5.020	31	5	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:109770879	C	NA	39	0	39	64.128	7.223	0	0	0	39	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:109770879	C	NA	38	0	38	65.316	6.485	0	0	0	38	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:109770879	C	NA	41	0	41	65.244	7.755	0	0	0	41	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:109770879	C	NA	42	0	42	63.762	9.146	0	0	0	42	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:109770879	C	NA	41	0	41	65.220	7.048	0	0	0	41	0	MICAL1	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:138753141	C	NA	32	0	32	68.469	3.793	0	0	0	32	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:138753141	C	NA	25	0	25	66.480	6.125	0	0	0	25	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:138753141	C	T	15	0.200	12	64.667	7.738	3	62.667	1.155	12	3	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:138753141	C	NA	26	0	26	67.692	3.937	0	0	0	26	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:138753141	C	NA	22	0	22	68.364	4.158	0	0	0	22	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:138753141	C	NA	22	0	22	66.864	5.445	0	0	0	22	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:138753141	C	NA	25	0	25	66.880	4.825	0	0	0	25	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:138753141	C	NA	35	0	35	64.943	9.184	0	0	0	35	0	NHSL1	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:143095757	C	NA	296	0	296	67.159	6.279	0	0	0	296	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:143095757	C	NA	235	0	235	66.949	6.239	0	0	0	235	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:143095757	C	NA	252	0	252	67.437	5.267	0	0	0	252	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:143095757	C	NA	298	0	297	67.316	5.843	0	0	0	297	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:143095757	C	NA	259	0	259	67.537	6.074	0	0	0	259	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:143095757	C	NA	324	0	324	67.219	5.983	0	0	0	324	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:143095757	C	T	306	0.359	196	67.250	5.763	110	66.691	7.495	196	110	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:143095757	C	NA	292	0	292	67.647	5.865	0	0	0	292	0	HIVEP2	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:158923575	G	NA	64	0	64	64.734	7.560	0	0	0	64	0	TULP4	exonic	synonymous_SNV
RCC_T4--2	chr6:158923575	G	A	38	0.158	32	62.250	9.384	6	59.000	12.361	32	6	TULP4	exonic	synonymous_SNV
RCC_T4--3	chr6:158923575	G	NA	48	0	48	63.000	9.717	0	0	0	48	0	TULP4	exonic	synonymous_SNV
RCC_T4--4	chr6:158923575	G	A	43	0.070	40	64.450	6.324	3	67.333	2.082	40	3	TULP4	exonic	synonymous_SNV
RCC_T4--5	chr6:158923575	G	A	34	0.029	33	65.121	7.809	1	62.000	0.000	33	1	TULP4	exonic	synonymous_SNV
RCC_T4--6	chr6:158923575	G	NA	47	0	46	63.022	10.129	0	0	0	46	0	TULP4	exonic	synonymous_SNV
RCC_T4--7	chr6:158923575	G	NA	53	0	53	64.434	7.705	0	0	0	53	0	TULP4	exonic	synonymous_SNV
RCC_T4--GL	chr6:158923575	G	NA	46	0	46	65.696	4.411	0	0	0	46	0	TULP4	exonic	synonymous_SNV
RCC_T4--1	chr6:159192270	G	NA	55	0	55	64.618	8.066	0	0	0	55	0	EZR	intronic	NA
RCC_T4--2	chr6:159192270	G	NA	53	0	53	61.038	9.483	0	0	0	53	0	EZR	intronic	NA
RCC_T4--3	chr6:159192270	G	NA	48	0	48	58.354	12.754	0	0	0	48	0	EZR	intronic	NA
RCC_T4--4	chr6:159192270	G	NA	46	0	46	59.739	11.941	0	0	0	46	0	EZR	intronic	NA
RCC_T4--5	chr6:159192270	G	A	53	0.113	47	63.128	8.308	6	57.333	13.589	47	6	EZR	intronic	NA
RCC_T4--6	chr6:159192270	G	NA	57	0	57	60.596	11.085	0	0	0	57	0	EZR	intronic	NA
RCC_T4--7	chr6:159192270	G	NA	57	0	57	60.982	10.489	0	0	0	57	0	EZR	intronic	NA
RCC_T4--GL	chr6:159192270	G	NA	51	0	51	63.353	7.959	0	0	0	51	0	EZR	intronic	NA
RCC_T4--1	chr6:27418955	A	NA	48	0	48	68.708	4.042	0	0	0	48	0	ZNF184	UTR3	NA
RCC_T4--2	chr6:27418955	A	NA	60	0	60	68.200	4.452	0	0	0	60	0	ZNF184	UTR3	NA
RCC_T4--3	chr6:27418955	A	NA	48	0	48	67.812	5.553	0	0	0	48	0	ZNF184	UTR3	NA
RCC_T4--4	chr6:27418955	A	NA	56	0	56	67.661	7.905	0	0	0	56	0	ZNF184	UTR3	NA
RCC_T4--5	chr6:27418955	A	NA	50	0	50	68.040	4.314	0	0	0	50	0	ZNF184	UTR3	NA
RCC_T4--6	chr6:27418955	A	C	67	0.373	42	67.952	5.165	25	69.120	4.246	42	25	ZNF184	UTR3	NA
RCC_T4--7	chr6:27418955	A	NA	70	0	70	68.400	4.882	0	0	0	70	0	ZNF184	UTR3	NA
RCC_T4--GL	chr6:27418955	A	NA	69	0	69	68.913	3.467	0	0	0	69	0	ZNF184	UTR3	NA
RCC_T4--1	chr6:33653133	C	NA	34	0	34	68.706	3.344	0	0	0	34	0	ITPR3	intronic	NA
RCC_T4--2	chr6:33653133	C	NA	50	0	50	67.180	6.285	0	0	0	50	0	ITPR3	intronic	NA
RCC_T4--3	chr6:33653133	C	NA	41	0	41	66.195	5.496	0	0	0	41	0	ITPR3	intronic	NA
RCC_T4--4	chr6:33653133	C	NA	39	0	39	66.615	5.050	0	0	0	39	0	ITPR3	intronic	NA
RCC_T4--5	chr6:33653133	C	NA	43	0	43	67.930	3.984	0	0	0	43	0	ITPR3	intronic	NA
RCC_T4--6	chr6:33653133	C	NA	35	0	35	67.086	3.784	0	0	0	35	0	ITPR3	intronic	NA
RCC_T4--7	chr6:33653133	C	A	39	0.154	33	66.182	7.286	6	57.000	12.633	33	6	ITPR3	intronic	NA
RCC_T4--GL	chr6:33653133	C	NA	38	0	37	66.162	9.296	0	0	0	37	0	ITPR3	intronic	NA
RCC_T4--1	chr6:37339340	C	NA	75	0	75	66.720	6.831	0	0	0	75	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:37339340	C	NA	92	0	92	66.076	7.313	0	0	0	92	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:37339340	C	NA	73	0	73	66.973	4.106	0	0	0	73	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:37339340	C	NA	82	0	82	66.549	5.567	0	0	0	82	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:37339340	C	A	74	0.108	66	65.894	7.692	8	67.000	3.338	66	8	RNF8	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:37339340	C	NA	86	0	86	66.105	6.300	0	0	0	86	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:37339340	C	A	89	0.011	88	67.000	5.602	1	33.000	0.000	88	1	RNF8	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:37339340	C	NA	83	0	83	66.398	6.550	0	0	0	83	0	RNF8	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:38883039	G	T	101	0.337	67	66.522	7.776	34	68.441	4.186	67	34	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:38883039	G	T	130	0.215	102	67.059	5.371	28	67.464	5.757	102	28	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:38883039	G	T	101	0.327	68	68.191	4.860	33	66.424	5.793	68	33	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:38883039	G	T	116	0.138	100	66.100	7.276	16	68.562	3.425	100	16	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:38883039	G	T	126	0.238	96	67.312	6.576	30	67.267	6.023	96	30	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:38883039	G	T	159	0.346	104	68.087	5.042	55	69.382	3.153	104	55	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:38883039	G	T	100	0.420	58	67.034	7.341	42	66.905	4.957	58	42	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:38883039	G	NA	108	0	108	67.713	5.882	0	0	0	108	0	DNAH8	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:41162514	C	NA	45	0	45	61.822	10.476	0	0	0	45	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:41162514	C	A	61	0.131	52	61.654	9.852	8	63.500	4.175	52	8	TREML2	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:41162514	C	NA	49	0	49	63.531	7.919	0	0	0	49	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:41162514	C	NA	55	0	55	62.491	9.473	0	0	0	55	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:41162514	C	NA	62	0	62	64.145	8.091	0	0	0	62	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:41162514	C	NA	64	0	64	63.828	8.713	0	0	0	64	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:41162514	C	NA	60	0	60	63.167	7.363	0	0	0	60	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:41162514	C	NA	62	0	61	64.279	7.644	0	0	0	61	0	TREML2	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:41904376	G	NA	57	0	56	67.268	4.052	0	0	0	56	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:41904376	G	NA	60	0	60	64.617	7.511	0	0	0	60	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:41904376	G	NA	50	0	50	66.020	7.121	0	0	0	50	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:41904376	G	NA	54	0	54	66.722	5.523	0	0	0	54	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:41904376	G	NA	47	0	47	64.702	7.555	0	0	0	47	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:41904376	G	NA	66	0	66	64.439	9.309	0	0	0	66	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:41904376	G	T	43	0.116	38	66.026	6.736	5	62.200	4.970	38	5	CCND3	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:41904376	G	NA	50	0	50	67.020	4.984	0	0	0	50	0	CCND3	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:43747468	T	NA	26	0	26	68.000	3.655	0	0	0	26	0	VEGFA	intronic	NA
RCC_T4--2	chr6:43747468	T	NA	35	0	35	65.086	5.792	0	0	0	35	0	VEGFA	intronic	NA
RCC_T4--3	chr6:43747468	T	A	24	0.167	20	66.750	3.582	4	68.250	2.062	20	4	VEGFA	intronic	NA
RCC_T4--4	chr6:43747468	T	NA	24	0	24	65.833	7.772	0	0	0	24	0	VEGFA	intronic	NA
RCC_T4--5	chr6:43747468	T	NA	22	0	22	66.227	5.520	0	0	0	22	0	VEGFA	intronic	NA
RCC_T4--6	chr6:43747468	T	NA	32	0	32	63.750	9.585	0	0	0	32	0	VEGFA	intronic	NA
RCC_T4--7	chr6:43747468	T	NA	27	0	27	62.259	7.734	0	0	0	27	0	VEGFA	intronic	NA
RCC_T4--GL	chr6:43747468	T	NA	39	0	39	64.821	8.042	0	0	0	39	0	VEGFA	intronic	NA
RCC_T4--1	chr6:44108011	A	C	57	0.035	51	57.882	11.084	2	34.500	2.121	51	2	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:44108011	A	C	66	0.061	60	57.350	10.892	4	34.000	2.000	60	4	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:44108011	A	C	52	0.058	48	56.271	13.088	3	36.667	0.577	48	3	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:44108011	A	C	63	0.016	61	58.115	12.069	1	33.000	0.000	61	1	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:44108011	A	C	47	0.149	40	58.250	12.173	7	38.429	5.412	40	7	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:44108011	A	C	64	0.047	61	57.656	12.817	3	35.667	2.309	61	3	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:44108011	A	C	33	0.061	30	59.033	11.760	2	33.000	0.000	30	2	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:44108011	A	NA	39	0	38	59.211	12.177	0	0	0	38	0	TMEM63B	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:44151545	C	NA	49	0	49	64.633	7.530	0	0	0	49	0	CAPN11	intronic	NA
RCC_T4--2	chr6:44151545	C	NA	48	0	48	62.812	7.440	0	0	0	48	0	CAPN11	intronic	NA
RCC_T4--3	chr6:44151545	C	NA	46	0	46	61.109	11.342	0	0	0	46	0	CAPN11	intronic	NA
RCC_T4--4	chr6:44151545	C	NA	47	0	47	63.064	7.608	0	0	0	47	0	CAPN11	intronic	NA
RCC_T4--5	chr6:44151545	C	NA	35	0	35	64.543	5.868	0	0	0	35	0	CAPN11	intronic	NA
RCC_T4--6	chr6:44151545	C	NA	57	0	57	62.404	10.208	0	0	0	57	0	CAPN11	intronic	NA
RCC_T4--7	chr6:44151545	C	T	26	0.154	22	62.364	9.266	4	62.500	4.041	22	4	CAPN11	intronic	NA
RCC_T4--GL	chr6:44151545	C	NA	46	0	46	64.457	8.151	0	0	0	46	0	CAPN11	intronic	NA
RCC_T4--1	chr6:44197805	C	NA	49	0	49	65.102	6.414	0	0	0	49	0	SLC29A1	intronic	NA
RCC_T4--2	chr6:44197805	C	NA	31	0	31	64.645	8.377	0	0	0	31	0	SLC29A1	intronic	NA
RCC_T4--3	chr6:44197805	C	NA	42	0	42	63.262	8.485	0	0	0	42	0	SLC29A1	intronic	NA
RCC_T4--4	chr6:44197805	C	T	53	0.151	45	63.889	9.485	8	58.000	9.856	45	8	SLC29A1	intronic	NA
RCC_T4--5	chr6:44197805	C	NA	39	0	39	65.821	8.290	0	0	0	39	0	SLC29A1	intronic	NA
RCC_T4--6	chr6:44197805	C	T	41	0.024	40	65.600	7.635	1	41.000	0.000	40	1	SLC29A1	intronic	NA
RCC_T4--7	chr6:44197805	C	NA	46	0	46	62.457	10.295	0	0	0	46	0	SLC29A1	intronic	NA
RCC_T4--GL	chr6:44197805	C	NA	34	0	34	67.147	4.850	0	0	0	34	0	SLC29A1	intronic	NA
RCC_T4--1	chr6:72091370	G	T	30	0.033	29	67.655	5.942	1	68.000	0.000	29	1	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--2	chr6:72091370	G	T	36	0.056	34	67.324	3.235	2	68.000	4.243	34	2	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--3	chr6:72091370	G	T	26	0.038	25	64.760	8.437	1	72.000	0.000	25	1	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--4	chr6:72091370	G	T	38	0.132	33	67.303	2.921	5	69.200	2.168	33	5	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--5	chr6:72091370	G	T	23	0.087	21	67.667	2.781	2	71.000	1.414	21	2	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--6	chr6:72091370	G	NA	45	0	45	66.333	6.135	0	0	0	45	0	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--7	chr6:72091370	G	T	24	0.292	17	68.059	3.071	7	69.286	1.890	17	7	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--GL	chr6:72091370	G	NA	40	0	40	67.475	4.218	0	0	0	40	0	MIR30C2(dist=4636),MIR30A(dist=21884)	intergenic	NA
RCC_T4--1	chr6:76623708	A	NA	82	0	82	65.073	4.455	0	0	0	82	0	MYO6	intronic	NA
RCC_T4--2	chr6:76623708	A	NA	63	0	63	63.635	5.683	0	0	0	63	0	MYO6	intronic	NA
RCC_T4--3	chr6:76623708	A	C	72	0.375	45	62.444	7.533	27	65.963	4.442	45	27	MYO6	intronic	NA
RCC_T4--4	chr6:76623708	A	NA	72	0	72	63.681	5.399	0	0	0	72	0	MYO6	intronic	NA
RCC_T4--5	chr6:76623708	A	NA	93	0	93	65.366	4.024	0	0	0	93	0	MYO6	intronic	NA
RCC_T4--6	chr6:76623708	A	NA	71	0	70	64.957	4.942	0	0	0	70	0	MYO6	intronic	NA
RCC_T4--7	chr6:76623708	A	NA	66	0	66	64.167	4.467	0	0	0	66	0	MYO6	intronic	NA
RCC_T4--GL	chr6:76623708	A	NA	79	0	79	64.544	4.110	0	0	0	79	0	MYO6	intronic	NA
RCC_T4--1	chr6:83849801	T	A	109	0.202	87	68.586	4.142	22	70.409	2.197	87	22	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--2	chr6:83849801	T	A	167	0.198	134	67.381	6.353	33	67.909	3.956	134	33	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--3	chr6:83849801	T	A	127	0.354	82	69.049	6.373	45	68.867	5.957	82	45	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--4	chr6:83849801	T	A	163	0.209	129	69.140	3.678	34	69.000	3.094	129	34	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--5	chr6:83849801	T	A	181	0.370	114	67.991	6.587	67	68.403	5.684	114	67	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--6	chr6:83849801	T	A	152	0.408	90	67.811	4.647	62	67.645	6.384	90	62	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--7	chr6:83849801	T	A	187	0.294	132	68.023	5.651	55	68.927	4.136	132	55	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--GL	chr6:83849801	T	NA	149	0	149	69.094	4.001	0	0	0	149	0	DOPEY1	exonic	nonsynonymous_SNV
RCC_T4--1	chr6:84324657	A	NA	40	0	40	69.125	5.407	0	0	0	40	0	SNAP91	intronic	NA
RCC_T4--2	chr6:84324657	A	G	54	0.111	48	68.104	6.302	6	69.167	3.189	48	6	SNAP91	intronic	NA
RCC_T4--3	chr6:84324657	A	NA	29	0	29	69.345	3.498	0	0	0	29	0	SNAP91	intronic	NA
RCC_T4--4	chr6:84324657	A	NA	48	0	48	68.896	4.781	0	0	0	48	0	SNAP91	intronic	NA
RCC_T4--5	chr6:84324657	A	NA	37	0	37	69.324	3.119	0	0	0	37	0	SNAP91	intronic	NA
RCC_T4--6	chr6:84324657	A	NA	51	0	51	69.490	3.460	0	0	0	51	0	SNAP91	intronic	NA
RCC_T4--7	chr6:84324657	A	NA	46	0	46	68.457	4.124	0	0	0	46	0	SNAP91	intronic	NA
RCC_T4--GL	chr6:84324657	A	NA	52	0	52	69.423	3.616	0	0	0	52	0	SNAP91	intronic	NA
RCC_T4--1	chr7:100550651	T	C	60	0.217	47	63.872	6.971	13	61.923	9.060	47	13	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--2	chr7:100550651	T	C	38	0.263	28	61.357	6.838	10	64.600	1.897	28	10	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--3	chr7:100550651	T	C	47	0.128	41	62.732	6.546	6	63.167	3.817	41	6	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--4	chr7:100550651	T	C	51	0.118	45	62.978	6.351	6	64.667	1.506	45	6	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--5	chr7:100550651	T	C	52	0.192	42	62.190	8.028	10	59.900	9.994	42	10	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--6	chr7:100550651	T	C	54	0.056	51	61.824	6.907	3	64.000	3.464	51	3	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--7	chr7:100550651	T	C	36	0.139	31	63.323	7.476	5	65.200	0.837	31	5	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--GL	chr7:100550651	T	NA	34	0	33	63.030	7.601	0	0	0	33	0	ACHE(dist=57059),MUC12(dist=62253)	intergenic	NA
RCC_T4--1	chr7:102582985	T	NA	30	0	30	67.567	6.268	0	0	0	30	0	FBXL13,LRRC17	intronic	NA
RCC_T4--2	chr7:102582985	T	NA	32	0	32	68.125	4.301	0	0	0	32	0	FBXL13,LRRC17	intronic	NA
RCC_T4--3	chr7:102582985	T	A	18	0.167	15	66.333	5.080	3	62.333	1.528	15	3	FBXL13,LRRC17	intronic	NA
RCC_T4--4	chr7:102582985	T	NA	47	0	47	67.362	5.566	0	0	0	47	0	FBXL13,LRRC17	intronic	NA
RCC_T4--5	chr7:102582985	T	NA	19	0	19	66.421	5.561	0	0	0	19	0	FBXL13,LRRC17	intronic	NA
RCC_T4--6	chr7:102582985	T	NA	31	0	31	66.968	6.232	0	0	0	31	0	FBXL13,LRRC17	intronic	NA
RCC_T4--7	chr7:102582985	T	NA	21	0	21	68.238	3.129	0	0	0	21	0	FBXL13,LRRC17	intronic	NA
RCC_T4--GL	chr7:102582985	T	NA	33	0	33	68.121	4.321	0	0	0	33	0	FBXL13,LRRC17	intronic	NA
RCC_T4--1	chr7:106522436	C	NA	12	0	12	69.917	1.505	0	0	0	12	0	PIK3CG	intronic	NA
RCC_T4--2	chr7:106522436	C	NA	23	0	23	67.957	4.913	0	0	0	23	0	PIK3CG	intronic	NA
RCC_T4--3	chr7:106522436	C	NA	21	0	21	70.190	2.040	0	0	0	21	0	PIK3CG	intronic	NA
RCC_T4--4	chr7:106522436	C	NA	22	0	22	68.682	3.107	0	0	0	22	0	PIK3CG	intronic	NA
RCC_T4--5	chr7:106522436	C	A	29	0.138	25	68.000	4.682	4	69.500	3.786	25	4	PIK3CG	intronic	NA
RCC_T4--6	chr7:106522436	C	NA	24	0	24	68.625	3.831	0	0	0	24	0	PIK3CG	intronic	NA
RCC_T4--7	chr7:106522436	C	NA	23	0	23	67.870	4.093	0	0	0	23	0	PIK3CG	intronic	NA
RCC_T4--GL	chr7:106522436	C	NA	35	0	35	68.543	4.435	0	0	0	35	0	PIK3CG	intronic	NA
RCC_T4--1	chr7:134852443	C	NA	58	0	58	66.000	8.566	0	0	0	58	0	C7orf49	intronic	NA
RCC_T4--2	chr7:134852443	C	NA	50	0	50	67.520	4.523	0	0	0	50	0	C7orf49	intronic	NA
RCC_T4--3	chr7:134852443	C	NA	62	0	62	66.806	5.972	0	0	0	62	0	C7orf49	intronic	NA
RCC_T4--4	chr7:134852443	C	NA	69	0	69	67.826	5.520	0	0	0	69	0	C7orf49	intronic	NA
RCC_T4--5	chr7:134852443	C	NA	68	0	68	67.441	5.524	0	0	0	68	0	C7orf49	intronic	NA
RCC_T4--6	chr7:134852443	C	G	37	0.324	25	67.880	3.308	12	66.833	5.374	25	12	C7orf49	intronic	NA
RCC_T4--7	chr7:134852443	C	NA	52	0	52	67.058	6.213	0	0	0	52	0	C7orf49	intronic	NA
RCC_T4--GL	chr7:134852443	C	NA	49	0	49	68.061	3.727	0	0	0	49	0	C7orf49	intronic	NA
RCC_T4--1	chr7:141490063	A	NA	33	0	33	65.636	7.570	0	0	0	33	0	TAS2R5	UTR5	NA
RCC_T4--2	chr7:141490063	A	NA	24	0	24	66.417	4.074	0	0	0	24	0	TAS2R5	UTR5	NA
RCC_T4--3	chr7:141490063	A	NA	26	0	26	67.385	3.601	0	0	0	26	0	TAS2R5	UTR5	NA
RCC_T4--4	chr7:141490063	A	T	18	0.167	15	65.667	4.169	3	64.000	1.732	15	3	TAS2R5	UTR5	NA
RCC_T4--5	chr7:141490063	A	NA	23	0	23	68.870	2.616	0	0	0	23	0	TAS2R5	UTR5	NA
RCC_T4--6	chr7:141490063	A	NA	37	0	37	65.622	7.414	0	0	0	37	0	TAS2R5	UTR5	NA
RCC_T4--7	chr7:141490063	A	NA	41	0	41	66.146	6.740	0	0	0	41	0	TAS2R5	UTR5	NA
RCC_T4--GL	chr7:141490063	A	NA	34	0	34	63.206	9.578	0	0	0	34	0	TAS2R5	UTR5	NA
RCC_T4--1	chr7:143095544	G	NA	106	0	106	67.623	4.770	0	0	0	106	0	EPHA1	intronic	NA
RCC_T4--2	chr7:143095544	G	A	87	0.115	77	67.000	5.842	10	63.800	11.670	77	10	EPHA1	intronic	NA
RCC_T4--3	chr7:143095544	G	NA	81	0	80	68.338	4.182	0	0	0	80	0	EPHA1	intronic	NA
RCC_T4--4	chr7:143095544	G	NA	89	0	89	66.876	7.179	0	0	0	89	0	EPHA1	intronic	NA
RCC_T4--5	chr7:143095544	G	NA	100	0	100	68.480	3.732	0	0	0	100	0	EPHA1	intronic	NA
RCC_T4--6	chr7:143095544	G	NA	117	0	116	67.664	5.990	0	0	0	116	0	EPHA1	intronic	NA
RCC_T4--7	chr7:143095544	G	NA	94	0	92	66.891	4.498	0	0	0	92	0	EPHA1	intronic	NA
RCC_T4--GL	chr7:143095544	G	NA	97	0	97	68.000	4.858	0	0	0	97	0	EPHA1	intronic	NA
RCC_T4--1	chr7:150713878	T	G	30	0.033	29	56.793	11.528	1	33.000	0.000	29	1	ATG9B	exonic	unknown
RCC_T4--2	chr7:150713878	T	G	21	0.143	18	57.167	9.829	3	35.000	1.732	18	3	ATG9B	exonic	unknown
RCC_T4--3	chr7:150713878	T	G	16	0.062	15	61.133	11.115	1	36.000	0.000	15	1	ATG9B	exonic	unknown
RCC_T4--4	chr7:150713878	T	G	23	0.217	18	58.111	12.058	5	36.000	5.196	18	5	ATG9B	exonic	unknown
RCC_T4--5	chr7:150713878	T	G	13	0.154	11	62.545	11.414	2	35.000	2.828	11	2	ATG9B	exonic	unknown
RCC_T4--6	chr7:150713878	T	G	27	0.111	24	58.708	12.327	3	34.000	1.732	24	3	ATG9B	exonic	unknown
RCC_T4--7	chr7:150713878	T	G	34	0.029	33	57.606	12.592	1	33.000	0.000	33	1	ATG9B	exonic	unknown
RCC_T4--GL	chr7:150713878	T	NA	35	0	33	58.000	9.928	0	0	0	33	0	ATG9B	exonic	unknown
RCC_T4--1	chr7:156756801	C	NA	46	0	46	65.391	7.915	0	0	0	46	0	NOM1	intronic	NA
RCC_T4--2	chr7:156756801	C	NA	46	0	46	66.283	6.163	0	0	0	46	0	NOM1	intronic	NA
RCC_T4--3	chr7:156756801	C	NA	32	0	32	65.875	5.863	0	0	0	32	0	NOM1	intronic	NA
RCC_T4--4	chr7:156756801	C	G	35	0.114	31	67.484	4.932	4	69.500	2.887	31	4	NOM1	intronic	NA
RCC_T4--5	chr7:156756801	C	NA	47	0	47	62.191	11.152	0	0	0	47	0	NOM1	intronic	NA
RCC_T4--6	chr7:156756801	C	NA	49	0	49	64.633	7.158	0	0	0	49	0	NOM1	intronic	NA
RCC_T4--7	chr7:156756801	C	NA	30	0	30	67.433	5.184	0	0	0	30	0	NOM1	intronic	NA
RCC_T4--GL	chr7:156756801	C	NA	46	0	46	65.587	5.385	0	0	0	46	0	NOM1	intronic	NA
RCC_T4--1	chr7:23761073	A	T	59	0.068	55	67.509	4.509	4	64.750	1.893	55	4	STK31	intronic	NA
RCC_T4--2	chr7:23761073	A	T	59	0.085	54	67.185	4.938	5	65.600	1.517	54	5	STK31	intronic	NA
RCC_T4--3	chr7:23761073	A	T	45	0.044	43	66.186	4.996	2	65.000	0.000	43	2	STK31	intronic	NA
RCC_T4--4	chr7:23761073	A	NA	54	0	54	67.130	3.900	0	0	0	54	0	STK31	intronic	NA
RCC_T4--5	chr7:23761073	A	T	42	0.071	39	65.410	8.690	3	65.000	0.000	39	3	STK31	intronic	NA
RCC_T4--6	chr7:23761073	A	T	60	0.033	58	66.190	6.645	2	65.000	1.414	58	2	STK31	intronic	NA
RCC_T4--7	chr7:23761073	A	T	51	0.176	42	66.262	6.897	9	63.778	3.032	42	9	STK31	intronic	NA
RCC_T4--GL	chr7:23761073	A	NA	41	0	41	67.951	3.612	0	0	0	41	0	STK31	intronic	NA
RCC_T4--1	chr7:25252375	C	NA	29	0	29	68.069	4.183	0	0	0	29	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--2	chr7:25252375	C	NA	30	0	30	65.767	6.207	0	0	0	30	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--3	chr7:25252375	C	NA	19	0	19	65.474	8.727	0	0	0	19	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--4	chr7:25252375	C	NA	27	0	27	66.852	5.538	0	0	0	27	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--5	chr7:25252375	C	NA	29	0	29	65.897	5.796	0	0	0	29	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--6	chr7:25252375	C	NA	29	0	29	65.759	7.529	0	0	0	29	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--7	chr7:25252375	C	A	40	0.150	34	64.824	8.537	6	61.333	11.894	34	6	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--GL	chr7:25252375	C	NA	46	0	46	66.848	4.667	0	0	0	46	0	C7orf31(dist=32558),NPVF(dist=11816)	intergenic	NA
RCC_T4--1	chr7:38476030	C	NA	65	0	65	67.938	5.573	0	0	0	65	0	AMPH	intronic	NA
RCC_T4--2	chr7:38476030	C	NA	89	0	89	67.854	5.085	0	0	0	89	0	AMPH	intronic	NA
RCC_T4--3	chr7:38476030	C	NA	74	0	74	67.986	4.384	0	0	0	74	0	AMPH	intronic	NA
RCC_T4--4	chr7:38476030	C	NA	69	0	69	67.913	4.119	0	0	0	69	0	AMPH	intronic	NA
RCC_T4--5	chr7:38476030	C	NA	80	0	80	68.675	3.825	0	0	0	80	0	AMPH	intronic	NA
RCC_T4--6	chr7:38476030	C	T	82	0.293	58	68.017	4.785	24	66.042	8.883	58	24	AMPH	intronic	NA
RCC_T4--7	chr7:38476030	C	NA	76	0	75	68.560	4.091	0	0	0	75	0	AMPH	intronic	NA
RCC_T4--GL	chr7:38476030	C	NA	99	0	99	68.949	3.789	0	0	0	99	0	AMPH	intronic	NA
RCC_T4--1	chr7:5338913	C	A	47	0.106	41	63.610	7.102	5	62.200	14.078	41	5	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--2	chr7:5338913	C	NA	58	0	58	63.948	8.367	0	0	0	58	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--3	chr7:5338913	C	NA	69	0	69	63.174	7.666	0	0	0	69	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--4	chr7:5338913	C	NA	44	0	44	64.818	7.571	0	0	0	44	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--5	chr7:5338913	C	NA	47	0	47	65.255	7.450	0	0	0	47	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--6	chr7:5338913	C	NA	40	0	40	64.375	9.852	0	0	0	40	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--7	chr7:5338913	C	NA	38	0	38	64.789	5.629	0	0	0	38	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--GL	chr7:5338913	C	NA	37	0	37	64.108	7.912	0	0	0	37	0	SLC29A4	exonic	nonsynonymous_SNV
RCC_T4--1	chr7:77756605	G	NA	89	0	89	66.169	5.829	0	0	0	89	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--2	chr7:77756605	G	NA	108	0	108	64.991	6.496	0	0	0	108	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--3	chr7:77756605	G	NA	107	0	107	65.486	5.224	0	0	0	107	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--4	chr7:77756605	G	NA	113	0	113	65.221	6.519	0	0	0	113	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--5	chr7:77756605	G	NA	157	0	157	64.892	8.168	0	0	0	157	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--6	chr7:77756605	G	NA	108	0	108	64.926	8.427	0	0	0	108	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--7	chr7:77756605	G	A	98	0.510	48	64.938	8.699	50	64.580	6.581	48	50	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr7:77756605	G	NA	93	0	93	65.043	7.397	0	0	0	93	0	MAGI2	exonic	nonsynonymous_SNV
RCC_T4--1	chr8:118542895	C	NA	21	0	21	70.381	3.427	0	0	0	21	0	MED30	intronic	NA
RCC_T4--2	chr8:118542895	C	NA	32	0	31	69.323	2.737	0	0	0	31	0	MED30	intronic	NA
RCC_T4--3	chr8:118542895	C	A	17	0.176	14	69.000	4.315	3	69.667	2.082	14	3	MED30	intronic	NA
RCC_T4--4	chr8:118542895	C	NA	29	0	29	69.483	2.415	0	0	0	29	0	MED30	intronic	NA
RCC_T4--5	chr8:118542895	C	NA	24	0	24	67.417	5.047	0	0	0	24	0	MED30	intronic	NA
RCC_T4--6	chr8:118542895	C	NA	34	0	34	69.265	4.826	0	0	0	34	0	MED30	intronic	NA
RCC_T4--7	chr8:118542895	C	NA	37	0	37	70.297	1.927	0	0	0	37	0	MED30	intronic	NA
RCC_T4--GL	chr8:118542895	C	NA	34	0	34	68.559	4.857	0	0	0	34	0	MED30	intronic	NA
RCC_T4--1	chr8:121528096	C	NA	29	0	29	69.552	3.680	0	0	0	29	0	MTBP	intronic	NA
RCC_T4--2	chr8:121528096	C	NA	34	0	34	69.059	3.634	0	0	0	34	0	MTBP	intronic	NA
RCC_T4--3	chr8:121528096	C	NA	46	0	46	69.500	3.424	0	0	0	46	0	MTBP	intronic	NA
RCC_T4--4	chr8:121528096	C	NA	44	0	44	69.727	3.172	0	0	0	44	0	MTBP	intronic	NA
RCC_T4--5	chr8:121528096	C	NA	49	0	49	68.918	4.187	0	0	0	49	0	MTBP	intronic	NA
RCC_T4--6	chr8:121528096	C	T	43	0.465	23	68.391	4.335	20	69.850	2.300	23	20	MTBP	intronic	NA
RCC_T4--7	chr8:121528096	C	T	46	0.022	45	68.556	4.920	1	40.000	0.000	45	1	MTBP	intronic	NA
RCC_T4--GL	chr8:121528096	C	NA	37	0	37	68.784	3.560	0	0	0	37	0	MTBP	intronic	NA
RCC_T4--1	chr8:125015626	C	NA	35	0	35	68.314	5.630	0	0	0	35	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--2	chr8:125015626	C	NA	42	0	42	67.405	6.141	0	0	0	42	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--3	chr8:125015626	C	A	32	0.125	28	68.000	3.859	4	68.500	3.512	28	4	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--4	chr8:125015626	C	NA	52	0	51	68.098	4.904	0	0	0	51	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--5	chr8:125015626	C	NA	45	0	44	68.500	5.394	0	0	0	44	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--6	chr8:125015626	C	A	47	0.021	46	66.761	7.490	1	49.000	0.000	46	1	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--7	chr8:125015626	C	NA	29	0	29	66.207	7.646	0	0	0	29	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--GL	chr8:125015626	C	NA	42	0	42	68.333	5.030	0	0	0	42	0	FER1L6-AS1	ncRNA_intronic	NA
RCC_T4--1	chr8:146106768	G	C	42	0.167	35	68.229	4.346	7	69.857	3.388	35	7	ZNF250	UTR3	NA
RCC_T4--2	chr8:146106768	G	C	54	0.407	32	67.219	6.384	22	68.864	3.616	32	22	ZNF250	UTR3	NA
RCC_T4--3	chr8:146106768	G	C	30	0.367	19	69.000	2.667	11	67.182	6.853	19	11	ZNF250	UTR3	NA
RCC_T4--4	chr8:146106768	G	C	40	0.175	33	68.455	4.809	7	65.571	4.504	33	7	ZNF250	UTR3	NA
RCC_T4--5	chr8:146106768	G	C	39	0.256	29	67.345	6.629	10	67.700	5.100	29	10	ZNF250	UTR3	NA
RCC_T4--6	chr8:146106768	G	C	58	0.448	32	68.656	2.755	26	67.577	4.465	32	26	ZNF250	UTR3	NA
RCC_T4--7	chr8:146106768	G	C	41	0.341	27	68.778	4.979	14	68.571	4.183	27	14	ZNF250	UTR3	NA
RCC_T4--GL	chr8:146106768	G	NA	46	0	46	68.174	3.883	0	0	0	46	0	ZNF250	UTR3	NA
RCC_T4--1	chr8:22463805	G	NA	47	0	47	67.468	4.898	0	0	0	47	0	CCAR2	intronic	NA
RCC_T4--2	chr8:22463805	G	NA	52	0	52	67.269	6.004	0	0	0	52	0	CCAR2	intronic	NA
RCC_T4--3	chr8:22463805	G	NA	38	0	38	67.974	3.284	0	0	0	38	0	CCAR2	intronic	NA
RCC_T4--4	chr8:22463805	G	NA	39	0	39	67.359	4.344	0	0	0	39	0	CCAR2	intronic	NA
RCC_T4--5	chr8:22463805	G	NA	55	0	55	67.509	6.200	0	0	0	55	0	CCAR2	intronic	NA
RCC_T4--6	chr8:22463805	G	A	37	0.378	23	68.087	8.235	14	68.000	3.038	23	14	CCAR2	intronic	NA
RCC_T4--7	chr8:22463805	G	NA	47	0	47	68.064	3.650	0	0	0	47	0	CCAR2	intronic	NA
RCC_T4--GL	chr8:22463805	G	NA	35	0	35	67.143	5.668	0	0	0	35	0	CCAR2	intronic	NA
RCC_T4--1	chr8:39537805	G	NA	15	0	15	71.533	0.743	0	0	0	15	0	ADAM18	intronic	NA
RCC_T4--2	chr8:39537805	G	A	28	0.071	26	67.885	4.013	2	65.500	3.536	26	2	ADAM18	intronic	NA
RCC_T4--3	chr8:39537805	G	NA	25	0	25	69.520	3.111	0	0	0	25	0	ADAM18	intronic	NA
RCC_T4--4	chr8:39537805	G	A	32	0.125	28	67.214	5.934	4	70.750	0.957	28	4	ADAM18	intronic	NA
RCC_T4--5	chr8:39537805	G	NA	25	0	25	66.800	11.147	0	0	0	25	0	ADAM18	intronic	NA
RCC_T4--6	chr8:39537805	G	NA	30	0	30	67.600	7.762	0	0	0	30	0	ADAM18	intronic	NA
RCC_T4--7	chr8:39537805	G	NA	28	0	28	69.429	2.686	0	0	0	28	0	ADAM18	intronic	NA
RCC_T4--GL	chr8:39537805	G	NA	37	0	37	68.270	4.788	0	0	0	37	0	ADAM18	intronic	NA
RCC_T4--1	chr8:68995411	G	T	56	0.107	28	66.679	7.160	6	59.500	13.019	28	6	PREX2	intronic	NA
RCC_T4--2	chr8:68995411	G	T	51	0.118	29	68.069	4.862	6	65.333	0.516	29	6	PREX2	intronic	NA
RCC_T4--3	chr8:68995411	G	T	58	0.069	29	65.207	8.954	4	60.250	7.632	29	4	PREX2	intronic	NA
RCC_T4--4	chr8:68995411	G	T	62	0.097	30	67.133	5.374	6	67.000	1.095	30	6	PREX2	intronic	NA
RCC_T4--5	chr8:68995411	G	T	64	0.062	30	68.567	4.289	4	64.000	2.828	30	4	PREX2	intronic	NA
RCC_T4--6	chr8:68995411	G	T	64	0.094	35	68.000	3.515	6	65.167	1.941	35	6	PREX2	intronic	NA
RCC_T4--7	chr8:68995411	G	T	66	0.076	30	69.133	2.909	5	61.400	8.050	30	5	PREX2	intronic	NA
RCC_T4--GL	chr8:68995411	G	NA	71	0	37	69.108	3.635	0	0	0	37	0	PREX2	intronic	NA
RCC_T4--1	chr9:101540700	A	G	32	0.125	28	65.964	7.642	4	67.500	5.066	28	4	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--2	chr9:101540700	A	NA	32	0	32	65.344	8.369	0	0	0	32	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--3	chr9:101540700	A	NA	30	0	30	65.000	7.652	0	0	0	30	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--4	chr9:101540700	A	NA	30	0	30	66.567	6.452	0	0	0	30	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--5	chr9:101540700	A	NA	29	0	29	66.207	6.360	0	0	0	29	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--6	chr9:101540700	A	NA	40	0	40	64.700	8.184	0	0	0	40	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--7	chr9:101540700	A	NA	21	0	21	63.048	10.371	0	0	0	21	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--GL	chr9:101540700	A	NA	39	0	39	65.077	8.521	0	0	0	39	0	ANKS6	exonic	nonsynonymous_SNV
RCC_T4--1	chr9:115969700	A	C	46	0.065	42	56.905	11.900	3	35.667	2.309	42	3	FKBP15	intronic	NA
RCC_T4--2	chr9:115969700	A	C	43	0.163	36	54.556	12.072	7	36.286	4.271	36	7	FKBP15	intronic	NA
RCC_T4--3	chr9:115969700	A	C	38	0.158	32	55.344	12.141	6	36.667	5.715	32	6	FKBP15	intronic	NA
RCC_T4--4	chr9:115969700	A	C	41	0.195	33	52.061	11.608	8	37.500	3.817	33	8	FKBP15	intronic	NA
RCC_T4--5	chr9:115969700	A	C	59	0.136	51	55.980	11.188	8	34.000	1.852	51	8	FKBP15	intronic	NA
RCC_T4--6	chr9:115969700	A	C	58	0.052	55	53.818	13.850	3	35.333	2.082	55	3	FKBP15	intronic	NA
RCC_T4--7	chr9:115969700	A	C	57	0.211	45	55.111	12.929	12	36.167	6.013	45	12	FKBP15	intronic	NA
RCC_T4--GL	chr9:115969700	A	NA	61	0	60	59.033	10.791	0	0	0	60	0	FKBP15	intronic	NA
RCC_T4--1	chr9:116356840	T	A	50	0.120	44	64.409	8.185	6	60.833	14.106	44	6	RGS3	intronic	NA
RCC_T4--2	chr9:116356840	T	NA	21	0	21	68.000	3.912	0	0	0	21	0	RGS3	intronic	NA
RCC_T4--3	chr9:116356840	T	NA	27	0	27	65.556	7.885	0	0	0	27	0	RGS3	intronic	NA
RCC_T4--4	chr9:116356840	T	NA	27	0	27	67.556	3.955	0	0	0	27	0	RGS3	intronic	NA
RCC_T4--5	chr9:116356840	T	NA	35	0	35	64.371	8.862	0	0	0	35	0	RGS3	intronic	NA
RCC_T4--6	chr9:116356840	T	NA	35	0	35	68.229	3.781	0	0	0	35	0	RGS3	intronic	NA
RCC_T4--7	chr9:116356840	T	NA	27	0	26	65.462	8.286	0	0	0	26	0	RGS3	intronic	NA
RCC_T4--GL	chr9:116356840	T	NA	34	0	34	63.882	9.828	0	0	0	34	0	RGS3	intronic	NA
RCC_T4--1	chr9:116857401	A	NA	42	0	42	65.571	7.843	0	0	0	42	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--2	chr9:116857401	A	NA	36	0	36	62.611	8.415	0	0	0	36	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--3	chr9:116857401	A	NA	37	0	37	63.189	9.778	0	0	0	37	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--4	chr9:116857401	A	C	43	0.186	35	62.457	8.753	8	64.875	1.808	35	8	KIF12	exonic	nonsynonymous_SNV
RCC_T4--5	chr9:116857401	A	NA	47	0	47	63.936	9.999	0	0	0	47	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--6	chr9:116857401	A	NA	35	0	35	63.771	11.402	0	0	0	35	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--7	chr9:116857401	A	NA	38	0	38	62.789	10.314	0	0	0	38	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--GL	chr9:116857401	A	NA	38	0	38	64.947	5.900	0	0	0	38	0	KIF12	exonic	nonsynonymous_SNV
RCC_T4--1	chr9:117666124	A	NA	76	0	76	68.553	3.686	0	0	0	76	0	TNFSF8	UTR3	NA
RCC_T4--2	chr9:117666124	A	NA	63	0	63	68.079	5.531	0	0	0	63	0	TNFSF8	UTR3	NA
RCC_T4--3	chr9:117666124	A	G	87	0.195	70	67.200	6.035	17	66.882	4.635	70	17	TNFSF8	UTR3	NA
RCC_T4--4	chr9:117666124	A	G	100	0.010	99	67.859	5.071	1	39.000	0.000	99	1	TNFSF8	UTR3	NA
RCC_T4--5	chr9:117666124	A	NA	88	0	88	69.034	3.476	0	0	0	88	0	TNFSF8	UTR3	NA
RCC_T4--6	chr9:117666124	A	NA	97	0	97	68.938	3.662	0	0	0	97	0	TNFSF8	UTR3	NA
RCC_T4--7	chr9:117666124	A	NA	63	0	63	67.921	5.225	0	0	0	63	0	TNFSF8	UTR3	NA
RCC_T4--GL	chr9:117666124	A	NA	106	0	106	68.906	4.645	0	0	0	106	0	TNFSF8	UTR3	NA
RCC_T4--1	chr9:125863799	G	A	19	0.158	16	67.562	3.464	3	64.333	8.021	16	3	RABGAP1	intronic	NA
RCC_T4--2	chr9:125863799	G	NA	20	0	20	67.300	3.935	0	0	0	20	0	RABGAP1	intronic	NA
RCC_T4--3	chr9:125863799	G	NA	17	0	17	67.294	5.406	0	0	0	17	0	RABGAP1	intronic	NA
RCC_T4--4	chr9:125863799	G	NA	21	0	21	65.333	5.978	0	0	0	21	0	RABGAP1	intronic	NA
RCC_T4--5	chr9:125863799	G	NA	39	0	39	65.256	8.792	0	0	0	39	0	RABGAP1	intronic	NA
RCC_T4--6	chr9:125863799	G	NA	33	0	33	66.121	6.868	0	0	0	33	0	RABGAP1	intronic	NA
RCC_T4--7	chr9:125863799	G	NA	27	0	27	67.556	5.639	0	0	0	27	0	RABGAP1	intronic	NA
RCC_T4--GL	chr9:125863799	G	NA	37	0	37	68.189	5.348	0	0	0	37	0	RABGAP1	intronic	NA
RCC_T4--1	chr9:131029537	A	G	159	0.226	123	66.772	5.279	36	64.889	7.118	123	36	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--2	chr9:131029537	A	G	109	0.037	105	66.581	5.487	4	68.000	4.967	105	4	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--3	chr9:131029537	A	G	127	0.370	79	65.481	6.829	47	66.574	4.867	79	47	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--4	chr9:131029537	A	G	136	0.199	109	66.064	6.293	27	65.519	8.829	109	27	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--5	chr9:131029537	A	G	126	0.357	80	66.263	5.320	45	64.889	9.932	80	45	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--6	chr9:131029537	A	G	121	0.264	89	64.899	7.283	32	67.906	7.009	89	32	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--7	chr9:131029537	A	G	135	0.259	100	66.960	5.427	35	66.571	4.104	100	35	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--GL	chr9:131029537	A	NA	116	0	116	65.957	7.450	0	0	0	116	0	GOLGA2	exonic	nonsynonymous_SNV
RCC_T4--1	chr9:131185200	T	NA	72	0	72	66.014	6.043	0	0	0	72	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--2	chr9:131185200	T	C	34	0.118	30	66.867	5.606	4	66.500	3.873	30	4	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--3	chr9:131185200	T	NA	35	0	35	65.286	9.151	0	0	0	35	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--4	chr9:131185200	T	NA	44	0	44	65.841	6.437	0	0	0	44	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--5	chr9:131185200	T	NA	48	0	48	66.292	4.552	0	0	0	48	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--6	chr9:131185200	T	NA	58	0	58	62.466	10.157	0	0	0	58	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--7	chr9:131185200	T	NA	48	0	48	63.521	9.065	0	0	0	48	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--GL	chr9:131185200	T	NA	44	0	44	66.545	8.348	0	0	0	44	0	CERCAM	exonic	nonsynonymous_SNV
RCC_T4--1	chr9:138515826	T	NA	45	0	45	67.511	4.082	0	0	0	45	0	GLT6D1	UTR3	NA
RCC_T4--2	chr9:138515826	T	NA	34	0	34	67.147	3.483	0	0	0	34	0	GLT6D1	UTR3	NA
RCC_T4--3	chr9:138515826	T	C	35	0.114	31	67.806	4.679	4	69.250	1.893	31	4	GLT6D1	UTR3	NA
RCC_T4--4	chr9:138515826	T	NA	35	0	35	66.714	5.839	0	0	0	35	0	GLT6D1	UTR3	NA
RCC_T4--5	chr9:138515826	T	NA	38	0	38	65.553	7.325	0	0	0	38	0	GLT6D1	UTR3	NA
RCC_T4--6	chr9:138515826	T	C	41	0.024	40	66.600	7.386	1	39.000	0.000	40	1	GLT6D1	UTR3	NA
RCC_T4--7	chr9:138515826	T	NA	44	0	44	67.659	6.313	0	0	0	44	0	GLT6D1	UTR3	NA
RCC_T4--GL	chr9:138515826	T	NA	47	0	47	67.468	4.827	0	0	0	47	0	GLT6D1	UTR3	NA
RCC_T4--1	chr9:139407601	A	NA	44	0	44	61.773	10.488	0	0	0	44	0	NOTCH1	intronic	NA
RCC_T4--2	chr9:139407601	A	NA	44	0	44	60.136	11.017	0	0	0	44	0	NOTCH1	intronic	NA
RCC_T4--3	chr9:139407601	A	NA	33	0	33	65.485	6.741	0	0	0	33	0	NOTCH1	intronic	NA
RCC_T4--4	chr9:139407601	A	NA	32	0	32	65.125	7.339	0	0	0	32	0	NOTCH1	intronic	NA
RCC_T4--5	chr9:139407601	A	NA	39	0	39	63.538	7.409	0	0	0	39	0	NOTCH1	intronic	NA
RCC_T4--6	chr9:139407601	A	G	31	0.129	26	63.808	7.563	4	60.250	5.560	26	4	NOTCH1	intronic	NA
RCC_T4--7	chr9:139407601	A	NA	41	0	41	63.561	9.744	0	0	0	41	0	NOTCH1	intronic	NA
RCC_T4--GL	chr9:139407601	A	NA	39	0	39	62.513	10.463	0	0	0	39	0	NOTCH1	intronic	NA
RCC_T4--1	chr9:141032909	G	T	29	0.138	25	68.480	2.931	4	67.500	4.435	25	4	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--2	chr9:141032909	G	NA	19	0	19	64.000	8.609	0	0	0	19	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--3	chr9:141032909	G	NA	30	0	29	66.103	6.956	0	0	0	29	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--4	chr9:141032909	G	NA	17	0	17	66.176	4.653	0	0	0	17	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--5	chr9:141032909	G	NA	34	0	34	65.765	5.836	0	0	0	34	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--6	chr9:141032909	G	NA	30	0	30	66.833	4.713	0	0	0	30	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--7	chr9:141032909	G	NA	23	0	23	67.304	4.353	0	0	0	23	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--GL	chr9:141032909	G	NA	39	0	38	68.632	4.016	0	0	0	38	0	CACNA1B(dist=13833),TUBBP5(dist=11656)	intergenic	NA
RCC_T4--1	chr9:32635217	G	A	220	0.232	169	67.994	4.694	51	66.255	7.249	169	51	TAF1L	exonic	stopgain_SNV
RCC_T4--2	chr9:32635217	G	NA	209	0	209	67.450	5.460	0	0	0	209	0	TAF1L	exonic	stopgain_SNV
RCC_T4--3	chr9:32635217	G	NA	212	0	211	67.227	5.425	0	0	0	211	0	TAF1L	exonic	stopgain_SNV
RCC_T4--4	chr9:32635217	G	NA	223	0	223	67.081	6.660	0	0	0	223	0	TAF1L	exonic	stopgain_SNV
RCC_T4--5	chr9:32635217	G	A	233	0.300	163	66.969	5.885	70	66.814	5.134	163	70	TAF1L	exonic	stopgain_SNV
RCC_T4--6	chr9:32635217	G	NA	214	0	214	66.897	6.434	0	0	0	214	0	TAF1L	exonic	stopgain_SNV
RCC_T4--7	chr9:32635217	G	NA	238	0	238	67.374	5.318	0	0	0	238	0	TAF1L	exonic	stopgain_SNV
RCC_T4--GL	chr9:32635217	G	NA	201	0	200	67.275	5.749	0	0	0	200	0	TAF1L	exonic	stopgain_SNV
RCC_T4--1	chr9:35561417	A	NA	33	0	33	56.000	11.352	0	0	0	33	0	RUSC2	UTR3	NA
RCC_T4--2	chr9:35561417	A	C	32	0.156	27	58.444	10.599	5	38.400	7.162	27	5	RUSC2	UTR3	NA
RCC_T4--3	chr9:35561417	A	C	42	0.071	38	57.105	10.797	3	38.333	4.041	38	3	RUSC2	UTR3	NA
RCC_T4--4	chr9:35561417	A	C	34	0.059	32	61.312	9.700	2	34.500	2.121	32	2	RUSC2	UTR3	NA
RCC_T4--5	chr9:35561417	A	C	20	0.050	19	54.579	12.447	1	36.000	0.000	19	1	RUSC2	UTR3	NA
RCC_T4--6	chr9:35561417	A	C	47	0.085	42	55.262	11.616	4	42.250	9.069	42	4	RUSC2	UTR3	NA
RCC_T4--7	chr9:35561417	A	C	35	0.171	29	52.793	12.431	6	35.167	1.722	29	6	RUSC2	UTR3	NA
RCC_T4--GL	chr9:35561417	A	NA	34	0	33	56.424	11.681	0	0	0	33	0	RUSC2	UTR3	NA
RCC_T4--1	chr9:36169464	C	NA	66	0	66	66.545	7.123	0	0	0	66	0	CCIN	UTR5	NA
RCC_T4--2	chr9:36169464	C	A	36	0.111	32	66.750	8.124	4	64.500	1.732	32	4	CCIN	UTR5	NA
RCC_T4--3	chr9:36169464	C	NA	33	0	33	65.667	6.426	0	0	0	33	0	CCIN	UTR5	NA
RCC_T4--4	chr9:36169464	C	NA	43	0	43	65.326	8.712	0	0	0	43	0	CCIN	UTR5	NA
RCC_T4--5	chr9:36169464	C	NA	56	0	56	68.232	3.145	0	0	0	56	0	CCIN	UTR5	NA
RCC_T4--6	chr9:36169464	C	NA	59	0	59	66.983	4.998	0	0	0	59	0	CCIN	UTR5	NA
RCC_T4--7	chr9:36169464	C	NA	28	0	28	65.607	8.270	0	0	0	28	0	CCIN	UTR5	NA
RCC_T4--GL	chr9:36169464	C	NA	39	0	39	67.923	4.009	0	0	0	39	0	CCIN	UTR5	NA
RCC_T4--1	chr9:72046184	C	NA	146	0	146	66.007	6.638	0	0	0	146	0	APBA1	UTR3	NA
RCC_T4--2	chr9:72046184	C	NA	96	0	96	65.521	6.516	0	0	0	96	0	APBA1	UTR3	NA
RCC_T4--3	chr9:72046184	C	G	93	0.194	75	64.827	8.140	18	64.722	8.696	75	18	APBA1	UTR3	NA
RCC_T4--4	chr9:72046184	C	NA	103	0	102	65.196	7.448	0	0	0	102	0	APBA1	UTR3	NA
RCC_T4--5	chr9:72046184	C	NA	143	0	143	65.643	6.490	0	0	0	143	0	APBA1	UTR3	NA
RCC_T4--6	chr9:72046184	C	NA	150	0	150	66.280	4.926	0	0	0	150	0	APBA1	UTR3	NA
RCC_T4--7	chr9:72046184	C	NA	137	0	137	65.365	7.067	0	0	0	137	0	APBA1	UTR3	NA
RCC_T4--GL	chr9:72046184	C	NA	102	0	102	65.608	6.293	0	0	0	102	0	APBA1	UTR3	NA
RCC_T4--1	chr9:77614785	C	NA	134	0	134	67.873	5.453	0	0	0	134	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--2	chr9:77614785	C	A	100	0.160	84	67.857	5.402	16	64.375	4.440	84	16	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--3	chr9:77614785	C	NA	143	0	143	67.084	5.634	0	0	0	143	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--4	chr9:77614785	C	NA	191	0	191	67.204	5.289	0	0	0	191	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--5	chr9:77614785	C	NA	166	0	166	68.072	4.993	0	0	0	166	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--6	chr9:77614785	C	NA	195	0	195	67.621	5.143	0	0	0	195	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--7	chr9:77614785	C	NA	176	0	176	66.727	6.515	0	0	0	176	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--GL	chr9:77614785	C	NA	171	0	171	67.281	6.083	0	0	0	171	0	C9orf41	exonic	nonsynonymous_SNV
RCC_T4--1	chr9:90432468	T	NA	58	0	58	68.724	3.665	0	0	0	58	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--2	chr9:90432468	T	NA	40	0	40	67.950	6.280	0	0	0	40	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--3	chr9:90432468	T	NA	53	0	53	66.566	6.268	0	0	0	53	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--4	chr9:90432468	T	C	46	0.130	40	67.400	7.034	6	67.000	5.441	40	6	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--5	chr9:90432468	T	NA	50	0	50	67.760	4.980	0	0	0	50	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--6	chr9:90432468	T	NA	60	0	60	68.183	4.048	0	0	0	60	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--7	chr9:90432468	T	NA	73	0	72	67.917	5.240	0	0	0	72	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--GL	chr9:90432468	T	NA	67	0	67	68.090	5.256	0	0	0	67	0	CTSL3P(dist=30669),CTSLP8(dist=27192)	intergenic	NA
RCC_T4--1	chrX:107435727	C	NA	31	0	31	67.903	2.914	0	0	0	31	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--2	chrX:107435727	C	NA	27	0	27	66.889	5.584	0	0	0	27	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--3	chrX:107435727	C	NA	37	0	37	68.135	3.750	0	0	0	37	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--4	chrX:107435727	C	NA	37	0	37	66.432	4.543	0	0	0	37	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--5	chrX:107435727	C	NA	52	0	52	65.481	6.261	0	0	0	52	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--6	chrX:107435727	C	NA	42	0	42	66.881	3.723	0	0	0	42	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--7	chrX:107435727	C	A	30	0.133	26	65.308	8.147	4	67.750	4.425	26	4	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--GL	chrX:107435727	C	NA	36	0	36	67.028	6.007	0	0	0	36	0	COL4A6	exonic	nonsynonymous_SNV
RCC_T4--1	chrX:127185256	C	T	220	0.291	156	67.218	6.002	64	67.219	5.481	156	64	ACTRT1	exonic	synonymous_SNV
RCC_T4--2	chrX:127185256	C	T	193	0.238	147	67.048	6.128	46	67.804	4.256	147	46	ACTRT1	exonic	synonymous_SNV
RCC_T4--3	chrX:127185256	C	T	159	0.296	112	66.152	8.079	47	67.915	5.508	112	47	ACTRT1	exonic	synonymous_SNV
RCC_T4--4	chrX:127185256	C	T	211	0.199	169	67.367	4.747	42	67.405	4.814	169	42	ACTRT1	exonic	synonymous_SNV
RCC_T4--5	chrX:127185256	C	T	212	0.349	138	66.833	5.509	74	68.014	4.615	138	74	ACTRT1	exonic	synonymous_SNV
RCC_T4--6	chrX:127185256	C	T	224	0.036	215	66.935	5.423	8	70.000	2.204	215	8	ACTRT1	exonic	synonymous_SNV
RCC_T4--7	chrX:127185256	C	T	193	0.399	116	67.974	3.988	77	66.052	5.749	116	77	ACTRT1	exonic	synonymous_SNV
RCC_T4--GL	chrX:127185256	C	NA	158	0	158	67.082	4.980	0	0	0	158	0	ACTRT1	exonic	synonymous_SNV
RCC_T4--1	chrX:130218757	G	NA	72	0	72	66.194	5.120	0	0	0	72	0	ARHGAP36	intronic	NA
RCC_T4--2	chrX:130218757	G	NA	60	0	60	61.817	10.161	0	0	0	60	0	ARHGAP36	intronic	NA
RCC_T4--3	chrX:130218757	G	A	63	0.333	42	64.881	6.259	21	65.952	5.084	42	21	ARHGAP36	intronic	NA
RCC_T4--4	chrX:130218757	G	NA	84	0	84	65.571	5.458	0	0	0	84	0	ARHGAP36	intronic	NA
RCC_T4--5	chrX:130218757	G	NA	63	0	63	66.032	4.458	0	0	0	63	0	ARHGAP36	intronic	NA
RCC_T4--6	chrX:130218757	G	NA	79	0	79	65.139	8.340	0	0	0	79	0	ARHGAP36	intronic	NA
RCC_T4--7	chrX:130218757	G	NA	67	0	67	63.537	8.153	0	0	0	67	0	ARHGAP36	intronic	NA
RCC_T4--GL	chrX:130218757	G	NA	68	0	68	64.647	6.845	0	0	0	68	0	ARHGAP36	intronic	NA
RCC_T4--1	chrX:145701358	T	NA	52	0	51	58.039	11.980	0	0	0	51	0	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--2	chrX:145701358	T	G	46	0.065	42	59.310	11.829	3	39.667	4.619	42	3	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--3	chrX:145701358	T	NA	34	0	33	55.333	14.097	0	0	0	33	0	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--4	chrX:145701358	T	G	41	0.220	32	57.562	13.188	9	34.222	1.856	32	9	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--5	chrX:145701358	T	G	45	0.067	42	55.167	13.743	3	33.000	0.000	42	3	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--6	chrX:145701358	T	G	51	0.039	48	59.604	13.340	2	33.000	0.000	48	2	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--7	chrX:145701358	T	G	49	0.102	44	58.795	11.859	5	35.800	4.382	44	5	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--GL	chrX:145701358	T	NA	36	0	36	56.306	13.617	0	0	0	36	0	MIR891A(dist=591968),CXorf51A(dist=189944)	intergenic	NA
RCC_T4--1	chrX:148582701	T	G	19	0.053	18	65.278	5.378	1	65.000	0.000	18	1	IDS	intronic	NA
RCC_T4--2	chrX:148582701	T	G	23	0.043	22	67.727	3.857	1	66.000	0.000	22	1	IDS	intronic	NA
RCC_T4--3	chrX:148582701	T	G	20	0.050	19	66.737	4.458	1	66.000	0.000	19	1	IDS	intronic	NA
RCC_T4--4	chrX:148582701	T	G	26	0.231	20	65.300	7.575	6	64.000	2.966	20	6	IDS	intronic	NA
RCC_T4--5	chrX:148582701	T	G	15	0.133	13	65.154	4.845	2	65.500	0.707	13	2	IDS	intronic	NA
RCC_T4--6	chrX:148582701	T	G	23	0.087	21	66.190	9.443	2	66.500	2.121	21	2	IDS	intronic	NA
RCC_T4--7	chrX:148582701	T	NA	20	0	20	66.100	6.882	0	0	0	20	0	IDS	intronic	NA
RCC_T4--GL	chrX:148582701	T	NA	33	0	33	67.727	3.986	0	0	0	33	0	IDS	intronic	NA
RCC_T4--1	chrX:24605480	T	NA	58	0	58	67.948	4.310	0	0	0	58	0	PCYT1B	intronic	NA
RCC_T4--2	chrX:24605480	T	NA	42	0	42	67.167	6.578	0	0	0	42	0	PCYT1B	intronic	NA
RCC_T4--3	chrX:24605480	T	NA	41	0	41	65.951	7.997	0	0	0	41	0	PCYT1B	intronic	NA
RCC_T4--4	chrX:24605480	T	NA	35	0	35	67.257	5.987	0	0	0	35	0	PCYT1B	intronic	NA
RCC_T4--5	chrX:24605480	T	NA	51	0	51	68.373	3.842	0	0	0	51	0	PCYT1B	intronic	NA
RCC_T4--6	chrX:24605480	T	NA	52	0	52	66.865	8.054	0	0	0	52	0	PCYT1B	intronic	NA
RCC_T4--7	chrX:24605480	T	C	53	0.113	47	67.894	4.517	6	55.333	12.707	47	6	PCYT1B	intronic	NA
RCC_T4--GL	chrX:24605480	T	NA	61	0	61	67.098	7.033	0	0	0	61	0	PCYT1B	intronic	NA
RCC_T4--1	chrX:47061559	T	NA	48	0	47	67.149	6.685	0	0	0	47	0	UBA1	exonic	synonymous_SNV
RCC_T4--2	chrX:47061559	T	NA	41	0	41	65.659	4.270	0	0	0	41	0	UBA1	exonic	synonymous_SNV
RCC_T4--3	chrX:47061559	T	NA	19	0	19	68.263	4.293	0	0	0	19	0	UBA1	exonic	synonymous_SNV
RCC_T4--4	chrX:47061559	T	NA	37	0	37	67.189	4.115	0	0	0	37	0	UBA1	exonic	synonymous_SNV
RCC_T4--5	chrX:47061559	T	NA	29	0	29	68.448	3.203	0	0	0	29	0	UBA1	exonic	synonymous_SNV
RCC_T4--6	chrX:47061559	T	NA	35	0	35	65.914	7.282	0	0	0	35	0	UBA1	exonic	synonymous_SNV
RCC_T4--7	chrX:47061559	T	A	30	0.133	26	66.154	7.487	4	68.500	3.000	26	4	UBA1	exonic	synonymous_SNV
RCC_T4--GL	chrX:47061559	T	NA	46	0	46	64.848	9.552	0	0	0	46	0	UBA1	exonic	synonymous_SNV
RCC_T4--1	chrX:48306845	T	NA	61	0	61	67.230	6.037	0	0	0	61	0	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--2	chrX:48306845	T	G	72	0.083	66	67.500	5.390	6	63.833	1.472	66	6	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--3	chrX:48306845	T	G	46	0.196	37	68.189	4.383	9	60.667	5.635	37	9	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--4	chrX:48306845	T	G	51	0.039	49	67.163	5.006	2	62.000	0.000	49	2	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--5	chrX:48306845	T	G	64	0.016	63	67.508	6.616	1	65.000	0.000	63	1	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--6	chrX:48306845	T	G	60	0.083	55	65.200	8.445	5	65.400	2.608	55	5	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--7	chrX:48306845	T	G	68	0.059	64	67.438	4.611	4	61.750	4.717	64	4	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--GL	chrX:48306845	T	NA	61	0	61	67.377	5.897	0	0	0	61	0	SSX4B(dist=35490),SLC38A5(dist=10075)	intergenic	NA
RCC_T4--1	chrX:48858650	C	NA	50	0	50	62.220	8.874	0	0	0	50	0	GRIPAP1	UTR5	NA
RCC_T4--2	chrX:48858650	C	NA	40	0	40	58.025	11.818	0	0	0	40	0	GRIPAP1	UTR5	NA
RCC_T4--3	chrX:48858650	C	NA	29	0	29	64.034	5.039	0	0	0	29	0	GRIPAP1	UTR5	NA
RCC_T4--4	chrX:48858650	C	NA	37	0	37	56.514	12.755	0	0	0	37	0	GRIPAP1	UTR5	NA
RCC_T4--5	chrX:48858650	C	A	44	0.182	36	61.500	12.072	8	41.750	13.657	36	8	GRIPAP1	UTR5	NA
RCC_T4--6	chrX:48858650	C	NA	52	0	52	59.962	11.892	0	0	0	52	0	GRIPAP1	UTR5	NA
RCC_T4--7	chrX:48858650	C	NA	34	0	34	62.147	9.129	0	0	0	34	0	GRIPAP1	UTR5	NA
RCC_T4--GL	chrX:48858650	C	NA	38	0	38	60.500	9.633	0	0	0	38	0	GRIPAP1	UTR5	NA
RCC_T4--1	chrX:49040216	A	NA	93	0	93	65.376	6.532	0	0	0	93	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--2	chrX:49040216	A	NA	61	0	61	64.508	6.705	0	0	0	61	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--3	chrX:49040216	A	NA	75	0	75	65.120	6.219	0	0	0	75	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--4	chrX:49040216	A	G	68	0.015	67	65.970	5.254	1	38.000	0.000	67	1	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--5	chrX:49040216	A	NA	75	0	75	63.893	9.592	0	0	0	75	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--6	chrX:49040216	A	G	86	0.267	63	63.032	8.941	23	64.261	8.661	63	23	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--7	chrX:49040216	A	NA	76	0	76	63.382	9.311	0	0	0	76	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--GL	chrX:49040216	A	NA	66	0	66	63.379	9.041	0	0	0	66	0	PRICKLE3	exonic	nonsynonymous_SNV
RCC_T4--1	chrX:53575113	G	NA	27	0	27	64.630	9.935	0	0	0	27	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--2	chrX:53575113	G	A	33	0.182	27	67.407	4.449	6	63.667	5.820	27	6	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--3	chrX:53575113	G	NA	27	0	27	68.148	3.634	0	0	0	27	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--4	chrX:53575113	G	NA	28	0	28	67.250	3.845	0	0	0	28	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--5	chrX:53575113	G	NA	31	0	31	68.645	3.545	0	0	0	31	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--6	chrX:53575113	G	NA	46	0	46	67.370	5.326	0	0	0	46	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--7	chrX:53575113	G	NA	34	0	34	66.941	4.911	0	0	0	34	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--GL	chrX:53575113	G	NA	40	0	40	68.475	3.226	0	0	0	40	0	HUWE1	exonic	nonsynonymous_SNV
RCC_T4--1	chrX:70320535	A	C	35	0.200	25	63.480	7.757	7	35.143	4.488	25	7	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--2	chrX:70320535	A	C	26	0.038	25	61.160	13.732	1	33.000	0.000	25	1	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--3	chrX:70320535	A	C	39	0.077	36	63.806	10.339	3	33.000	0.000	36	3	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--4	chrX:70320535	A	C	25	0.040	24	66.375	8.112	1	33.000	0.000	24	1	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--5	chrX:70320535	A	C	36	0.028	35	62.829	13.103	1	33.000	0.000	35	1	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--6	chrX:70320535	A	NA	37	0	37	61.811	12.760	0	0	0	37	0	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--7	chrX:70320535	A	C	29	0.103	26	66.385	4.500	3	34.333	2.309	26	3	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--GL	chrX:70320535	A	NA	36	0	35	62.714	11.982	0	0	0	35	0	FOXO4	exonic	nonsynonymous_SNV
RCC_T4--1	chrX:78616750	C	G	95	0.242	71	67.676	5.342	23	67.565	4.262	71	23	ITM2A	intronic	NA
RCC_T4--2	chrX:78616750	C	G	99	0.232	76	66.829	6.268	23	67.783	4.156	76	23	ITM2A	intronic	NA
RCC_T4--3	chrX:78616750	C	G	82	0.317	56	67.554	6.364	26	68.308	5.097	56	26	ITM2A	intronic	NA
RCC_T4--4	chrX:78616750	C	G	113	0.142	97	67.021	5.909	16	67.125	7.201	97	16	ITM2A	intronic	NA
RCC_T4--5	chrX:78616750	C	G	114	0.289	81	67.469	5.468	33	68.848	3.528	81	33	ITM2A	intronic	NA
RCC_T4--6	chrX:78616750	C	G	135	0.022	132	68.295	4.191	3	69.000	3.000	132	3	ITM2A	intronic	NA
RCC_T4--7	chrX:78616750	C	G	99	0.394	60	65.783	7.764	39	68.359	4.457	60	39	ITM2A	intronic	NA
RCC_T4--GL	chrX:78616750	C	NA	103	0	103	68.019	5.145	0	0	0	103	0	ITM2A	intronic	NA
RCC_T4--1	chrX:86868775	G	T	37	0.270	27	69.481	2.680	10	67.300	3.199	27	10	KLHL4	intronic	NA
RCC_T4--2	chrX:86868775	G	T	59	0.305	41	67.439	5.710	18	68.722	2.372	41	18	KLHL4	intronic	NA
RCC_T4--3	chrX:86868775	G	T	44	0.250	33	69.697	2.744	11	67.455	3.045	33	11	KLHL4	intronic	NA
RCC_T4--4	chrX:86868775	G	T	54	0.204	43	66.558	7.465	11	66.091	7.395	43	11	KLHL4	intronic	NA
RCC_T4--5	chrX:86868775	G	T	45	0.333	30	66.667	6.799	15	67.800	3.075	30	15	KLHL4	intronic	NA
RCC_T4--6	chrX:86868775	G	T	54	0.093	49	68.102	5.924	5	64.200	11.692	49	5	KLHL4	intronic	NA
RCC_T4--7	chrX:86868775	G	T	57	0.333	38	69.947	3.040	19	67.789	4.674	38	19	KLHL4	intronic	NA
RCC_T4--GL	chrX:86868775	G	NA	37	0	37	69.027	3.753	0	0	0	37	0	KLHL4	intronic	NA
RCC_T5--1	chr10:100179804	T	C	124	0.258	91	63.560	9.404	32	63.938	7.143	91	32	HPS1	exonic	nonsynonymous_SNV
RCC_T5--2	chr10:100179804	T	C	146	0.158	123	64.789	7.529	23	65.348	8.510	123	23	HPS1	exonic	nonsynonymous_SNV
RCC_T5--3	chr10:100179804	T	C	120	0.142	103	64.913	7.927	17	59.824	11.458	103	17	HPS1	exonic	nonsynonymous_SNV
RCC_T5--4	chr10:100179804	T	C	166	0.151	141	65.709	7.222	25	66.960	3.034	141	25	HPS1	exonic	nonsynonymous_SNV
RCC_T5--5	chr10:100179804	T	C	143	0.322	97	63.608	9.033	46	64.261	7.479	97	46	HPS1	exonic	nonsynonymous_SNV
RCC_T5--6	chr10:100179804	T	C	137	0.044	131	63.084	9.201	6	65.833	2.229	131	6	HPS1	exonic	nonsynonymous_SNV
RCC_T5--7	chr10:100179804	T	C	159	0.352	103	65.340	8.045	56	64.714	6.995	103	56	HPS1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr10:100179804	T	NA	141	0	141	66.113	6.134	0	0	0	141	0	HPS1	exonic	nonsynonymous_SNV
RCC_T5--1	chr10:102509516	T	G	14	0.143	11	52.727	11.082	2	34.500	2.121	11	2	PAX2	exonic	synonymous_SNV
RCC_T5--2	chr10:102509516	T	NA	17	0	17	52.588	13.625	0	0	0	17	0	PAX2	exonic	synonymous_SNV
RCC_T5--3	chr10:102509516	T	G	26	0.077	24	58.500	9.921	2	34.500	2.121	24	2	PAX2	exonic	synonymous_SNV
RCC_T5--4	chr10:102509516	T	NA	17	0	17	56.824	10.626	0	0	0	17	0	PAX2	exonic	synonymous_SNV
RCC_T5--5	chr10:102509516	T	NA	28	0	28	53.857	12.557	0	0	0	28	0	PAX2	exonic	synonymous_SNV
RCC_T5--6	chr10:102509516	T	G	21	0.190	17	52.235	13.017	4	35.250	1.500	17	4	PAX2	exonic	synonymous_SNV
RCC_T5--7	chr10:102509516	T	G	25	0.120	22	57.591	11.048	3	46.333	20.551	22	3	PAX2	exonic	synonymous_SNV
RCC_T5--GL	chr10:102509516	T	NA	33	0	33	59.333	10.340	0	0	0	33	0	PAX2	exonic	synonymous_SNV
RCC_T5--1	chr10:102586796	A	C	30	0.033	29	60.379	11.912	1	33.000	0.000	29	1	PAX2	exonic	nonsynonymous_SNV
RCC_T5--2	chr10:102586796	A	NA	36	0	36	57.333	12.196	0	0	0	36	0	PAX2	exonic	nonsynonymous_SNV
RCC_T5--3	chr10:102586796	A	C	45	0.200	36	61.083	11.753	9	37.889	6.392	36	9	PAX2	exonic	nonsynonymous_SNV
RCC_T5--4	chr10:102586796	A	C	36	0.028	35	61.743	9.559	1	36.000	0.000	35	1	PAX2	exonic	nonsynonymous_SNV
RCC_T5--5	chr10:102586796	A	NA	51	0	51	57.922	11.713	0	0	0	51	0	PAX2	exonic	nonsynonymous_SNV
RCC_T5--6	chr10:102586796	A	C	25	0.080	23	59.348	12.123	2	38.000	7.071	23	2	PAX2	exonic	nonsynonymous_SNV
RCC_T5--7	chr10:102586796	A	C	34	0.029	32	62.500	10.839	1	36.000	0.000	32	1	PAX2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr10:102586796	A	NA	53	0	53	59.283	10.957	0	0	0	53	0	PAX2	exonic	nonsynonymous_SNV
RCC_T5--1	chr10:103569800	C	NA	12	0	12	65.833	5.408	0	0	0	12	0	MGEA5	intronic	NA
RCC_T5--2	chr10:103569800	C	A	16	0.188	13	69.846	2.444	3	41.667	0.577	13	3	MGEA5	intronic	NA
RCC_T5--3	chr10:103569800	C	NA	22	0	22	66.909	3.963	0	0	0	22	0	MGEA5	intronic	NA
RCC_T5--4	chr10:103569800	C	NA	26	0	26	65.500	6.433	0	0	0	26	0	MGEA5	intronic	NA
RCC_T5--5	chr10:103569800	C	NA	24	0	24	66.167	7.933	0	0	0	24	0	MGEA5	intronic	NA
RCC_T5--6	chr10:103569800	C	NA	24	0	24	67.958	3.593	0	0	0	24	0	MGEA5	intronic	NA
RCC_T5--7	chr10:103569800	C	NA	20	0	20	65.650	7.802	0	0	0	20	0	MGEA5	intronic	NA
RCC_T5--GL	chr10:103569800	C	NA	44	0	44	67.909	3.627	0	0	0	44	0	MGEA5	intronic	NA
RCC_T5--1	chr10:104141899	A	C	31	0.097	28	56.000	12.605	3	41.667	8.083	28	3	GBF1	exonic	nonsynonymous_SNV
RCC_T5--2	chr10:104141899	A	C	30	0.200	24	58.000	11.318	6	33.500	1.225	24	6	GBF1	exonic	nonsynonymous_SNV
RCC_T5--3	chr10:104141899	A	C	36	0.139	30	53.033	12.656	5	34.800	1.643	30	5	GBF1	exonic	nonsynonymous_SNV
RCC_T5--4	chr10:104141899	A	C	50	0.020	49	54.939	11.519	1	36.000	0.000	49	1	GBF1	exonic	nonsynonymous_SNV
RCC_T5--5	chr10:104141899	A	C	39	0.051	37	56.946	12.234	2	36.000	0.000	37	2	GBF1	exonic	nonsynonymous_SNV
RCC_T5--6	chr10:104141899	A	C	26	0.038	25	57.960	10.370	1	36.000	0.000	25	1	GBF1	exonic	nonsynonymous_SNV
RCC_T5--7	chr10:104141899	A	NA	20	0	20	53.650	13.425	0	0	0	20	0	GBF1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr10:104141899	A	NA	45	0	45	56.956	11.774	0	0	0	45	0	GBF1	exonic	nonsynonymous_SNV
RCC_T5--1	chr10:114207221	G	NA	21	0	21	66.190	4.094	0	0	0	21	0	VTI1A	exonic	synonymous_SNV
RCC_T5--2	chr10:114207221	G	NA	26	0	26	62.615	9.521	0	0	0	26	0	VTI1A	exonic	synonymous_SNV
RCC_T5--3	chr10:114207221	G	NA	28	0	28	61.679	10.205	0	0	0	28	0	VTI1A	exonic	synonymous_SNV
RCC_T5--4	chr10:114207221	G	A	27	0.148	23	64.087	10.846	4	61.000	5.774	23	4	VTI1A	exonic	synonymous_SNV
RCC_T5--5	chr10:114207221	G	NA	18	0	18	64.889	8.643	0	0	0	18	0	VTI1A	exonic	synonymous_SNV
RCC_T5--6	chr10:114207221	G	A	13	0.077	12	60.417	13.561	1	66.000	0.000	12	1	VTI1A	exonic	synonymous_SNV
RCC_T5--7	chr10:114207221	G	NA	24	0	24	65.167	5.514	0	0	0	24	0	VTI1A	exonic	synonymous_SNV
RCC_T5--GL	chr10:114207221	G	NA	43	0	43	61.581	10.769	0	0	0	43	0	VTI1A	exonic	synonymous_SNV
RCC_T5--1	chr10:24886589	C	T	89	0.090	81	67.432	6.399	8	66.250	10.306	81	8	ARHGAP21	intronic	NA
RCC_T5--2	chr10:24886589	C	T	96	0.021	94	67.468	5.944	2	49.500	12.021	94	2	ARHGAP21	intronic	NA
RCC_T5--3	chr10:24886589	C	T	84	0.012	83	68.048	5.508	1	41.000	0.000	83	1	ARHGAP21	intronic	NA
RCC_T5--4	chr10:24886589	C	T	86	0.012	85	68.035	5.204	1	70.000	0.000	85	1	ARHGAP21	intronic	NA
RCC_T5--5	chr10:24886589	C	T	88	0.205	70	65.943	9.010	18	69.444	2.995	70	18	ARHGAP21	intronic	NA
RCC_T5--6	chr10:24886589	C	NA	87	0	87	67.805	5.085	0	0	0	87	0	ARHGAP21	intronic	NA
RCC_T5--7	chr10:24886589	C	NA	64	0	64	67.891	6.280	0	0	0	64	0	ARHGAP21	intronic	NA
RCC_T5--GL	chr10:24886589	C	NA	90	0	90	68.400	5.346	0	0	0	90	0	ARHGAP21	intronic	NA
RCC_T5--1	chr10:29891270	A	C	28	0.036	27	53.111	12.759	1	37.000	0.000	27	1	MIR938	ncRNA_exonic	NA
RCC_T5--2	chr10:29891270	A	C	25	0.200	20	60.550	10.855	5	37.400	3.578	20	5	MIR938	ncRNA_exonic	NA
RCC_T5--3	chr10:29891270	A	C	24	0.208	19	59.947	9.738	5	35.400	2.191	19	5	MIR938	ncRNA_exonic	NA
RCC_T5--4	chr10:29891270	A	C	21	0.048	20	57.700	12.256	1	39.000	0.000	20	1	MIR938	ncRNA_exonic	NA
RCC_T5--5	chr10:29891270	A	C	18	0.056	17	58.588	10.278	1	39.000	0.000	17	1	MIR938	ncRNA_exonic	NA
RCC_T5--6	chr10:29891270	A	NA	14	0	14	57.786	11.905	0	0	0	14	0	MIR938	ncRNA_exonic	NA
RCC_T5--7	chr10:29891270	A	C	20	0.100	18	55.167	9.793	2	36.000	4.243	18	2	MIR938	ncRNA_exonic	NA
RCC_T5--GL	chr10:29891270	A	NA	35	0	35	58.371	10.044	0	0	0	35	0	MIR938	ncRNA_exonic	NA
RCC_T5--1	chr10:33552895	T	A	27	0.111	24	59.208	11.996	3	48.000	13.077	24	3	NRP1	intronic	NA
RCC_T5--2	chr10:33552895	T	A	24	0.125	21	57.524	13.902	3	34.667	2.887	21	3	NRP1	intronic	NA
RCC_T5--3	chr10:33552895	T	A	37	0.189	30	56.833	13.204	7	39.429	11.603	30	7	NRP1	intronic	NA
RCC_T5--4	chr10:33552895	T	A	58	0.086	53	57.604	11.623	5	37.200	6.943	53	5	NRP1	intronic	NA
RCC_T5--5	chr10:33552895	T	A	46	0.087	42	54.905	13.618	4	38.000	10.000	42	4	NRP1	intronic	NA
RCC_T5--6	chr10:33552895	T	A	28	0.107	25	57.520	12.955	3	40.333	8.083	25	3	NRP1	intronic	NA
RCC_T5--7	chr10:33552895	T	A	43	0.093	39	55.744	12.496	4	35.750	3.202	39	4	NRP1	intronic	NA
RCC_T5--GL	chr10:33552895	T	NA	53	0	53	56.585	12.020	0	0	0	53	0	NRP1	intronic	NA
RCC_T5--1	chr10:46216284	A	G	21	0.048	20	58.250	12.030	1	33.000	0.000	20	1	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--2	chr10:46216284	A	G	26	0.115	23	54.826	11.344	3	35.333	2.082	23	3	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--3	chr10:46216284	A	G	20	0.250	15	53.333	12.327	5	35.800	4.382	15	5	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--4	chr10:46216284	A	G	42	0.048	40	54.550	9.782	2	36.000	0.000	40	2	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--5	chr10:46216284	A	G	30	0.067	28	56.679	11.258	2	34.500	2.121	28	2	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--6	chr10:46216284	A	G	18	0.111	16	49.312	12.542	2	35.000	2.828	16	2	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--7	chr10:46216284	A	G	20	0.050	19	59.737	8.742	1	33.000	0.000	19	1	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--GL	chr10:46216284	A	NA	70	0	70	56.300	11.439	0	0	0	70	0	ZFAND4(dist=48023),FAM21C(dist=6364)	intergenic	NA
RCC_T5--1	chr10:50190508	T	NA	29	0	29	51.448	13.127	0	0	0	29	0	WDFY4	intronic	NA
RCC_T5--2	chr10:50190508	T	G	23	0.043	22	56.591	9.148	1	33.000	0.000	22	1	WDFY4	intronic	NA
RCC_T5--3	chr10:50190508	T	G	20	0.250	15	58.000	9.024	5	40.600	11.675	15	5	WDFY4	intronic	NA
RCC_T5--4	chr10:50190508	T	G	31	0.032	30	57.867	11.464	1	38.000	0.000	30	1	WDFY4	intronic	NA
RCC_T5--5	chr10:50190508	T	NA	28	0	27	57.370	9.548	0	0	0	27	0	WDFY4	intronic	NA
RCC_T5--6	chr10:50190508	T	G	24	0.042	23	57.522	11.041	1	38.000	0.000	23	1	WDFY4	intronic	NA
RCC_T5--7	chr10:50190508	T	G	35	0.029	33	55.697	10.376	1	38.000	0.000	33	1	WDFY4	intronic	NA
RCC_T5--GL	chr10:50190508	T	NA	46	0	46	59.391	10.184	0	0	0	46	0	WDFY4	intronic	NA
RCC_T5--1	chr10:69729932	C	A	40	0.075	37	68.108	6.063	3	63.333	4.933	37	3	HERC4	intronic	NA
RCC_T5--2	chr10:69729932	C	A	33	0.182	27	69.778	3.598	6	65.000	2.530	27	6	HERC4	intronic	NA
RCC_T5--3	chr10:69729932	C	A	32	0.219	25	67.920	5.773	7	67.143	2.340	25	7	HERC4	intronic	NA
RCC_T5--4	chr10:69729932	C	A	39	0.051	37	70.892	1.542	2	65.000	4.243	37	2	HERC4	intronic	NA
RCC_T5--5	chr10:69729932	C	NA	21	0	20	68.450	5.063	0	0	0	20	0	HERC4	intronic	NA
RCC_T5--6	chr10:69729932	C	A	45	0.089	41	69.561	4.439	4	68.500	2.517	41	4	HERC4	intronic	NA
RCC_T5--7	chr10:69729932	C	A	23	0.261	17	69.706	1.993	6	66.333	2.875	17	6	HERC4	intronic	NA
RCC_T5--GL	chr10:69729932	C	NA	48	0	47	69.234	4.659	0	0	0	47	0	HERC4	intronic	NA
RCC_T5--1	chr10:75286613	T	C	16	0.125	14	57.143	12.146	2	33.000	0.000	14	2	USP54	intronic	NA
RCC_T5--2	chr10:75286613	T	NA	17	0	17	49.176	13.063	0	0	0	17	0	USP54	intronic	NA
RCC_T5--3	chr10:75286613	T	C	24	0.125	21	48.333	14.108	3	35.000	3.464	21	3	USP54	intronic	NA
RCC_T5--4	chr10:75286613	T	NA	11	0	11	50.545	14.659	0	0	0	11	0	USP54	intronic	NA
RCC_T5--5	chr10:75286613	T	C	16	0.062	15	53.667	12.760	1	33.000	0.000	15	1	USP54	intronic	NA
RCC_T5--6	chr10:75286613	T	C	14	0.286	9	49.889	15.398	4	34.500	3.000	9	4	USP54	intronic	NA
RCC_T5--7	chr10:75286613	T	NA	12	0	12	56.250	11.371	0	0	0	12	0	USP54	intronic	NA
RCC_T5--GL	chr10:75286613	T	NA	34	0	34	51.029	12.772	0	0	0	34	0	USP54	intronic	NA
RCC_T5--1	chr10:82036105	G	C	46	0.174	38	65.211	8.135	8	67.125	5.083	38	8	MAT1A	intronic	NA
RCC_T5--2	chr10:82036105	G	C	34	0.088	31	67.258	4.926	3	67.667	1.528	31	3	MAT1A	intronic	NA
RCC_T5--3	chr10:82036105	G	C	51	0.078	47	66.191	8.069	4	70.500	3.000	47	4	MAT1A	intronic	NA
RCC_T5--4	chr10:82036105	G	C	44	0.114	39	65.205	9.852	5	67.600	3.578	39	5	MAT1A	intronic	NA
RCC_T5--5	chr10:82036105	G	C	51	0.216	40	66.425	7.049	11	66.364	3.982	40	11	MAT1A	intronic	NA
RCC_T5--6	chr10:82036105	G	C	46	0.087	42	65.690	8.714	4	69.500	2.517	42	4	MAT1A	intronic	NA
RCC_T5--7	chr10:82036105	G	C	42	0.286	30	66.833	7.018	12	64.583	11.049	30	12	MAT1A	intronic	NA
RCC_T5--GL	chr10:82036105	G	NA	48	0	46	66.935	6.645	0	0	0	46	0	MAT1A	intronic	NA
RCC_T5--1	chr10:85955255	G	T	24	0.042	23	66.130	8.325	1	33.000	0.000	23	1	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--2	chr10:85955255	G	T	28	0.036	27	67.037	6.853	1	33.000	0.000	27	1	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--3	chr10:85955255	G	NA	36	0	36	65.417	6.212	0	0	0	36	0	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--4	chr10:85955255	G	NA	33	0	32	64.531	9.758	0	0	0	32	0	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--5	chr10:85955255	G	NA	19	0	19	66.000	5.558	0	0	0	19	0	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--6	chr10:85955255	G	NA	24	0	24	63.167	8.810	0	0	0	24	0	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--7	chr10:85955255	G	T	23	0.174	19	65.211	8.317	4	56.000	12.728	19	4	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr10:85955255	G	NA	34	0	34	66.118	7.070	0	0	0	34	0	CDHR1	exonic	nonsynonymous_SNV
RCC_T5--1	chr10:94428402	T	G	15	0.067	14	58.857	8.411	1	39.000	0.000	14	1	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--2	chr10:94428402	T	G	21	0.095	18	55.056	10.822	2	45.000	0.000	18	2	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--3	chr10:94428402	T	G	27	0.074	24	56.083	10.333	2	41.000	5.657	24	2	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--4	chr10:94428402	T	G	28	0.036	27	56.741	9.998	1	37.000	0.000	27	1	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--5	chr10:94428402	T	G	19	0.053	18	57.556	12.561	1	39.000	0.000	18	1	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--6	chr10:94428402	T	G	16	0.250	11	59.636	8.594	4	38.250	2.500	11	4	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--7	chr10:94428402	T	NA	12	0	11	57.727	6.754	0	0	0	11	0	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--GL	chr10:94428402	T	NA	36	0	36	59.083	9.628	0	0	0	36	0	KIF11(dist=13250),HHEX(dist=21279)	intergenic	NA
RCC_T5--1	chr10:97786881	A	C	49	0.041	28	67.714	4.045	2	62.000	0.000	28	2	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--2	chr10:97786881	A	NA	48	0	25	67.960	3.409	0	0	0	25	0	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--3	chr10:97786881	A	C	59	0.051	23	67.478	2.810	3	63.000	1.732	23	3	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--4	chr10:97786881	A	C	74	0.068	34	68.588	3.955	5	64.400	2.510	34	5	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--5	chr10:97786881	A	C	48	0.021	32	66.781	6.776	1	65.000	0.000	32	1	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--6	chr10:97786881	A	C	52	0.019	23	62.217	12.795	1	65.000	0.000	23	1	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--7	chr10:97786881	A	C	40	0.025	14	68.786	2.486	1	65.000	0.000	14	1	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--GL	chr10:97786881	A	NA	88	0	42	67.690	3.672	0	0	0	42	0	ENTPD1-AS1	ncRNA_intronic	NA
RCC_T5--1	chr1:109547493	A	NA	10	0	10	56.500	9.478	0	0	0	10	0	WDR47	intronic	NA
RCC_T5--2	chr1:109547493	A	C	13	0.308	9	57.222	15.571	4	35.500	3.000	9	4	WDR47	intronic	NA
RCC_T5--3	chr1:109547493	A	NA	20	0	20	61.500	9.817	0	0	0	20	0	WDR47	intronic	NA
RCC_T5--4	chr1:109547493	A	NA	28	0	28	61.893	6.999	0	0	0	28	0	WDR47	intronic	NA
RCC_T5--5	chr1:109547493	A	NA	18	0	18	57.556	11.377	0	0	0	18	0	WDR47	intronic	NA
RCC_T5--6	chr1:109547493	A	NA	14	0	14	62.500	7.481	0	0	0	14	0	WDR47	intronic	NA
RCC_T5--7	chr1:109547493	A	NA	17	0	17	62.176	5.801	0	0	0	17	0	WDR47	intronic	NA
RCC_T5--GL	chr1:109547493	A	NA	34	0	34	63.206	7.784	0	0	0	34	0	WDR47	intronic	NA
RCC_T5--1	chr1:109803914	A	G	22	0.045	21	60.381	11.944	1	33.000	0.000	21	1	CELSR2	intronic	NA
RCC_T5--2	chr1:109803914	A	G	21	0.238	16	65.188	9.530	5	33.600	1.342	16	5	CELSR2	intronic	NA
RCC_T5--3	chr1:109803914	A	G	24	0.042	23	60.478	13.681	1	33.000	0.000	23	1	CELSR2	intronic	NA
RCC_T5--4	chr1:109803914	A	NA	34	0	34	63.294	10.518	0	0	0	34	0	CELSR2	intronic	NA
RCC_T5--5	chr1:109803914	A	NA	30	0	30	61.667	11.975	0	0	0	30	0	CELSR2	intronic	NA
RCC_T5--6	chr1:109803914	A	NA	25	0	25	64.520	8.832	0	0	0	25	0	CELSR2	intronic	NA
RCC_T5--7	chr1:109803914	A	NA	23	0	23	61.652	11.831	0	0	0	23	0	CELSR2	intronic	NA
RCC_T5--GL	chr1:109803914	A	NA	44	0	44	61.614	9.858	0	0	0	44	0	CELSR2	intronic	NA
RCC_T5--1	chr11:1011450	A	C	44	0.023	43	55.372	12.526	1	39.000	0.000	43	1	AP2A2	UTR3	NA
RCC_T5--2	chr11:1011450	A	C	20	0.250	15	60.667	8.805	5	37.000	3.674	15	5	AP2A2	UTR3	NA
RCC_T5--3	chr11:1011450	A	C	28	0.107	25	49.520	12.955	3	36.000	3.000	25	3	AP2A2	UTR3	NA
RCC_T5--4	chr11:1011450	A	C	24	0.083	22	58.000	9.304	2	35.000	2.828	22	2	AP2A2	UTR3	NA
RCC_T5--5	chr11:1011450	A	C	36	0.028	35	57.886	9.579	1	36.000	0.000	35	1	AP2A2	UTR3	NA
RCC_T5--6	chr11:1011450	A	C	23	0.043	22	55.409	10.391	1	33.000	0.000	22	1	AP2A2	UTR3	NA
RCC_T5--7	chr11:1011450	A	C	15	0.067	14	58.786	8.135	1	36.000	0.000	14	1	AP2A2	UTR3	NA
RCC_T5--GL	chr11:1011450	A	NA	43	0	43	55.186	9.929	0	0	0	43	0	AP2A2	UTR3	NA
RCC_T5--1	chr1:110170146	T	C	44	0.068	41	55.951	14.279	3	35.333	2.082	41	3	AMPD2	intronic	NA
RCC_T5--2	chr1:110170146	T	C	35	0.029	34	57.676	12.077	1	36.000	0.000	34	1	AMPD2	intronic	NA
RCC_T5--3	chr1:110170146	T	NA	46	0	46	58.152	11.372	0	0	0	46	0	AMPD2	intronic	NA
RCC_T5--4	chr1:110170146	T	NA	53	0	53	64.547	7.814	0	0	0	53	0	AMPD2	intronic	NA
RCC_T5--5	chr1:110170146	T	NA	42	0	42	61.667	10.252	0	0	0	42	0	AMPD2	intronic	NA
RCC_T5--6	chr1:110170146	T	C	37	0.162	31	62.290	8.626	6	34.500	2.345	31	6	AMPD2	intronic	NA
RCC_T5--7	chr1:110170146	T	C	40	0.025	39	58.897	10.205	1	33.000	0.000	39	1	AMPD2	intronic	NA
RCC_T5--GL	chr1:110170146	T	NA	39	0	39	63.462	9.256	0	0	0	39	0	AMPD2	intronic	NA
RCC_T5--1	chr11:1104416	C	T	17	0.176	14	65.857	7.912	3	65.333	2.517	14	3	MUC2	UTR3	NA
RCC_T5--2	chr11:1104416	C	NA	25	0	25	66.880	7.823	0	0	0	25	0	MUC2	UTR3	NA
RCC_T5--3	chr11:1104416	C	NA	20	0	20	68.400	3.485	0	0	0	20	0	MUC2	UTR3	NA
RCC_T5--4	chr11:1104416	C	NA	22	0	22	67.273	5.035	0	0	0	22	0	MUC2	UTR3	NA
RCC_T5--5	chr11:1104416	C	NA	19	0	19	67.474	3.935	0	0	0	19	0	MUC2	UTR3	NA
RCC_T5--6	chr11:1104416	C	NA	21	0	21	68.667	3.941	0	0	0	21	0	MUC2	UTR3	NA
RCC_T5--7	chr11:1104416	C	NA	29	0	29	67.586	3.611	0	0	0	29	0	MUC2	UTR3	NA
RCC_T5--GL	chr11:1104416	C	NA	37	0	37	66.270	4.712	0	0	0	37	0	MUC2	UTR3	NA
RCC_T5--1	chr11:116658400	A	C	24	0.042	23	54.870	10.442	1	36.000	0.000	23	1	ZNF259	intronic	NA
RCC_T5--2	chr11:116658400	A	C	19	0.053	18	56.444	9.966	1	36.000	0.000	18	1	ZNF259	intronic	NA
RCC_T5--3	chr11:116658400	A	C	21	0.190	17	56.941	10.250	4	36.250	0.500	17	4	ZNF259	intronic	NA
RCC_T5--4	chr11:116658400	A	NA	35	0	35	57.971	9.787	0	0	0	35	0	ZNF259	intronic	NA
RCC_T5--5	chr11:116658400	A	NA	23	0	23	55.304	9.393	0	0	0	23	0	ZNF259	intronic	NA
RCC_T5--6	chr11:116658400	A	NA	24	0	24	56.500	11.500	0	0	0	24	0	ZNF259	intronic	NA
RCC_T5--7	chr11:116658400	A	NA	25	0	24	59.417	8.577	0	0	0	24	0	ZNF259	intronic	NA
RCC_T5--GL	chr11:116658400	A	NA	34	0	34	56.824	11.754	0	0	0	34	0	ZNF259	intronic	NA
RCC_T5--1	chr11:117253375	T	G	27	0.037	26	49.115	10.041	1	33.000	0.000	26	1	CEP164	intronic	NA
RCC_T5--2	chr11:117253375	T	G	19	0.053	18	56.222	9.552	1	36.000	0.000	18	1	CEP164	intronic	NA
RCC_T5--3	chr11:117253375	T	G	42	0.190	34	51.971	10.086	8	35.625	1.923	34	8	CEP164	intronic	NA
RCC_T5--4	chr11:117253375	T	G	27	0.037	26	57.500	9.517	1	36.000	0.000	26	1	CEP164	intronic	NA
RCC_T5--5	chr11:117253375	T	G	22	0.182	17	52.353	10.653	4	39.750	6.397	17	4	CEP164	intronic	NA
RCC_T5--6	chr11:117253375	T	G	43	0.093	39	54.051	11.067	4	39.750	8.995	39	4	CEP164	intronic	NA
RCC_T5--7	chr11:117253375	T	G	35	0.029	34	51.471	10.025	1	36.000	0.000	34	1	CEP164	intronic	NA
RCC_T5--GL	chr11:117253375	T	NA	39	0	39	53.462	10.432	0	0	0	39	0	CEP164	intronic	NA
RCC_T5--1	chr11:117303051	C	A	28	0.143	24	67.250	3.566	4	60.000	2.828	24	4	DSCAML1	intronic	NA
RCC_T5--2	chr11:117303051	C	A	21	0.095	19	66.684	5.229	2	58.500	2.121	19	2	DSCAML1	intronic	NA
RCC_T5--3	chr11:117303051	C	A	19	0.158	16	67.062	3.356	3	64.667	1.528	16	3	DSCAML1	intronic	NA
RCC_T5--4	chr11:117303051	C	A	24	0.167	20	65.950	4.850	4	68.500	1.915	20	4	DSCAML1	intronic	NA
RCC_T5--5	chr11:117303051	C	A	26	0.192	21	68.381	4.566	5	68.400	4.278	21	5	DSCAML1	intronic	NA
RCC_T5--6	chr11:117303051	C	A	21	0.190	17	67.824	3.661	4	67.250	4.272	17	4	DSCAML1	intronic	NA
RCC_T5--7	chr11:117303051	C	A	19	0.368	12	66.500	4.964	7	69.286	2.928	12	7	DSCAML1	intronic	NA
RCC_T5--GL	chr11:117303051	C	NA	36	0	36	66.389	7.318	0	0	0	36	0	DSCAML1	intronic	NA
RCC_T5--1	chr11:119044110	T	G	65	0.169	54	61.796	11.111	11	65.636	4.843	54	11	NLRX1	intronic	NA
RCC_T5--2	chr11:119044110	T	G	61	0.131	52	63.981	8.512	8	65.000	11.699	52	8	NLRX1	intronic	NA
RCC_T5--3	chr11:119044110	T	G	47	0.191	38	65.842	4.365	9	63.333	9.165	38	9	NLRX1	intronic	NA
RCC_T5--4	chr11:119044110	T	G	52	0.135	45	66.156	6.862	7	66.857	3.338	45	7	NLRX1	intronic	NA
RCC_T5--5	chr11:119044110	T	G	54	0.278	39	64.051	6.061	15	67.000	2.928	39	15	NLRX1	intronic	NA
RCC_T5--6	chr11:119044110	T	G	45	0.111	40	63.250	11.059	5	66.000	3.674	40	5	NLRX1	intronic	NA
RCC_T5--7	chr11:119044110	T	G	45	0.333	30	64.333	9.466	15	66.333	3.155	30	15	NLRX1	intronic	NA
RCC_T5--GL	chr11:119044110	T	NA	66	0	66	65.955	7.152	0	0	0	66	0	NLRX1	intronic	NA
RCC_T5--1	chr11:121500263	G	A	134	0.276	97	67.206	6.053	37	67.270	4.464	97	37	SORL1	exonic	synonymous_SNV
RCC_T5--2	chr11:121500263	G	A	129	0.155	109	68.073	4.774	20	67.750	3.712	109	20	SORL1	exonic	synonymous_SNV
RCC_T5--3	chr11:121500263	G	A	137	0.182	112	67.170	4.797	25	67.240	7.870	112	25	SORL1	exonic	synonymous_SNV
RCC_T5--4	chr11:121500263	G	A	150	0.140	129	67.016	6.381	21	67.429	4.365	129	21	SORL1	exonic	synonymous_SNV
RCC_T5--5	chr11:121500263	G	A	156	0.237	119	66.353	6.504	37	68.486	3.656	119	37	SORL1	exonic	synonymous_SNV
RCC_T5--6	chr11:121500263	G	A	158	0.089	144	66.069	8.220	14	68.000	5.378	144	14	SORL1	exonic	synonymous_SNV
RCC_T5--7	chr11:121500263	G	A	169	0.290	120	67.283	5.851	49	67.592	4.852	120	49	SORL1	exonic	synonymous_SNV
RCC_T5--GL	chr11:121500263	G	NA	189	0	189	68.148	4.128	0	0	0	189	0	SORL1	exonic	synonymous_SNV
RCC_T5--1	chr11:124761369	T	G	19	0.053	18	59.944	12.877	1	33.000	0.000	18	1	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:124761369	T	NA	28	0	28	62.214	10.898	0	0	0	28	0	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:124761369	T	G	19	0.211	15	62.867	9.949	4	38.750	5.377	15	4	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:124761369	T	G	36	0.028	35	62.057	12.709	1	33.000	0.000	35	1	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:124761369	T	NA	34	0	34	63.794	8.018	0	0	0	34	0	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:124761369	T	NA	17	0	17	65.176	5.714	0	0	0	17	0	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:124761369	T	NA	33	0	33	64.364	7.449	0	0	0	33	0	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:124761369	T	NA	43	0	43	64.000	9.160	0	0	0	43	0	ROBO4	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:124952058	T	G	57	0.070	53	57.019	9.928	4	38.500	5.000	53	4	SLC37A2	intronic	NA
RCC_T5--2	chr11:124952058	T	G	31	0.226	24	59.125	10.494	7	38.429	4.995	24	7	SLC37A2	intronic	NA
RCC_T5--3	chr11:124952058	T	G	30	0.167	25	57.840	11.704	5	43.000	10.271	25	5	SLC37A2	intronic	NA
RCC_T5--4	chr11:124952058	T	G	46	0.043	44	59.659	9.373	2	37.000	0.000	44	2	SLC37A2	intronic	NA
RCC_T5--5	chr11:124952058	T	G	53	0.019	52	56.442	11.703	1	33.000	0.000	52	1	SLC37A2	intronic	NA
RCC_T5--6	chr11:124952058	T	G	47	0.085	42	57.500	10.507	4	38.500	5.000	42	4	SLC37A2	intronic	NA
RCC_T5--7	chr11:124952058	T	G	51	0.059	48	58.062	10.142	3	35.000	3.464	48	3	SLC37A2	intronic	NA
RCC_T5--GL	chr11:124952058	T	NA	48	0	47	55.234	12.511	0	0	0	47	0	SLC37A2	intronic	NA
RCC_T5--1	chr11:1270910	C	T	170	0.176	140	61.886	10.331	30	63.433	7.650	140	30	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:1270910	C	T	157	0.166	131	62.977	9.278	26	61.462	9.713	131	26	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:1270910	C	T	139	0.129	120	61.133	11.267	18	61.333	8.282	120	18	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:1270910	C	T	210	0.119	184	64.120	7.729	25	61.960	7.684	184	25	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:1270910	C	T	172	0.145	146	62.541	9.469	25	62.560	6.042	146	25	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:1270910	C	T	163	0.098	147	60.408	11.692	16	59.938	8.544	147	16	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:1270910	C	T	152	0.230	117	63.162	8.493	35	61.486	7.883	117	35	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:1270910	C	NA	239	0	238	63.466	8.533	0	0	0	238	0	MUC5B	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:1278520	A	C	44	0.068	41	55.024	9.156	3	35.000	3.464	41	3	MUC5B	intronic	NA
RCC_T5--2	chr11:1278520	A	C	60	0.167	50	52.420	10.108	10	36.500	4.859	50	10	MUC5B	intronic	NA
RCC_T5--3	chr11:1278520	A	C	43	0.070	40	54.925	10.521	3	38.667	6.658	40	3	MUC5B	intronic	NA
RCC_T5--4	chr11:1278520	A	NA	63	0	62	59.823	9.243	0	0	0	62	0	MUC5B	intronic	NA
RCC_T5--5	chr11:1278520	A	C	54	0.037	52	54.500	9.725	2	37.000	0.000	52	2	MUC5B	intronic	NA
RCC_T5--6	chr11:1278520	A	NA	44	0	43	55.884	10.500	0	0	0	43	0	MUC5B	intronic	NA
RCC_T5--7	chr11:1278520	A	C	49	0.020	48	55.750	9.853	1	36.000	0.000	48	1	MUC5B	intronic	NA
RCC_T5--GL	chr11:1278520	A	NA	65	0	65	56.446	9.597	0	0	0	65	0	MUC5B	intronic	NA
RCC_T5--1	chr1:11595708	A	C	34	0.176	26	52.269	11.277	6	33.667	1.633	26	6	PTCHD2	intronic	NA
RCC_T5--2	chr1:11595708	A	C	28	0.179	22	53.273	9.934	5	37.000	2.915	22	5	PTCHD2	intronic	NA
RCC_T5--3	chr1:11595708	A	C	20	0.250	15	55.467	12.082	5	36.200	5.215	15	5	PTCHD2	intronic	NA
RCC_T5--4	chr1:11595708	A	C	26	0.038	25	56.240	10.393	1	33.000	0.000	25	1	PTCHD2	intronic	NA
RCC_T5--5	chr1:11595708	A	C	38	0.053	36	57.083	9.075	2	40.500	10.607	36	2	PTCHD2	intronic	NA
RCC_T5--6	chr1:11595708	A	C	18	0.056	17	52.882	11.208	1	43.000	0.000	17	1	PTCHD2	intronic	NA
RCC_T5--7	chr1:11595708	A	C	29	0.069	27	54.000	10.641	2	36.000	0.000	27	2	PTCHD2	intronic	NA
RCC_T5--GL	chr1:11595708	A	NA	42	0	42	55.690	8.635	0	0	0	42	0	PTCHD2	intronic	NA
RCC_T5--1	chr11:17544325	A	C	26	0.192	21	61.048	10.356	5	35.000	2.739	21	5	USH1C	intronic	NA
RCC_T5--2	chr11:17544325	A	C	37	0.027	36	56.333	11.379	1	39.000	0.000	36	1	USH1C	intronic	NA
RCC_T5--3	chr11:17544325	A	C	20	0.050	19	57.053	11.655	1	38.000	0.000	19	1	USH1C	intronic	NA
RCC_T5--4	chr11:17544325	A	NA	31	0	31	60.290	10.370	0	0	0	31	0	USH1C	intronic	NA
RCC_T5--5	chr11:17544325	A	NA	38	0	38	57.579	11.190	0	0	0	38	0	USH1C	intronic	NA
RCC_T5--6	chr11:17544325	A	C	26	0.038	25	62.200	9.798	1	36.000	0.000	25	1	USH1C	intronic	NA
RCC_T5--7	chr11:17544325	A	C	34	0.029	33	58.545	11.209	1	38.000	0.000	33	1	USH1C	intronic	NA
RCC_T5--GL	chr11:17544325	A	NA	37	0	36	61.778	8.623	0	0	0	36	0	USH1C	intronic	NA
RCC_T5--1	chr11:18382370	T	NA	16	0	16	67.938	1.769	0	0	0	16	0	GTF2H1	intronic	NA
RCC_T5--2	chr11:18382370	T	G	16	0.125	14	67.357	4.700	2	63.500	2.121	14	2	GTF2H1	intronic	NA
RCC_T5--3	chr11:18382370	T	G	14	0.286	10	69.100	2.283	4	65.750	1.500	10	4	GTF2H1	intronic	NA
RCC_T5--4	chr11:18382370	T	G	45	0.044	43	69.047	3.116	2	66.500	2.121	43	2	GTF2H1	intronic	NA
RCC_T5--5	chr11:18382370	T	NA	20	0	20	68.050	3.086	0	0	0	20	0	GTF2H1	intronic	NA
RCC_T5--6	chr11:18382370	T	G	16	0.062	15	67.867	3.720	1	65.000	0.000	15	1	GTF2H1	intronic	NA
RCC_T5--7	chr11:18382370	T	G	19	0.105	17	66.765	6.389	2	63.500	2.121	17	2	GTF2H1	intronic	NA
RCC_T5--GL	chr11:18382370	T	NA	40	0	40	68.000	5.074	0	0	0	40	0	GTF2H1	intronic	NA
RCC_T5--1	chr1:119981663	T	G	48	0.146	41	56.244	13.019	7	35.286	2.138	41	7	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--2	chr1:119981663	T	G	49	0.102	43	59.279	12.441	5	40.000	6.245	43	5	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--3	chr1:119981663	T	G	36	0.167	30	58.667	13.058	6	40.833	7.548	30	6	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--4	chr1:119981663	T	G	65	0.077	60	57.783	11.566	5	34.600	2.191	60	5	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--5	chr1:119981663	T	G	36	0.083	33	59.424	12.684	3	37.000	0.000	33	3	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--6	chr1:119981663	T	G	38	0.158	32	53.031	12.517	6	40.500	7.530	32	6	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--7	chr1:119981663	T	G	43	0.047	41	58.756	10.681	2	35.000	2.828	41	2	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--GL	chr1:119981663	T	NA	52	0	52	57.077	12.204	0	0	0	52	0	HSD3B2(dist=16001),HSD3B1(dist=68163)	intergenic	NA
RCC_T5--1	chr11:209101	T	G	24	0.042	22	52.091	9.656	1	39.000	0.000	22	1	RIC8A	intronic	NA
RCC_T5--2	chr11:209101	T	G	22	0.045	21	56.286	9.799	1	36.000	0.000	21	1	RIC8A	intronic	NA
RCC_T5--3	chr11:209101	T	G	14	0.071	13	58.308	7.341	1	33.000	0.000	13	1	RIC8A	intronic	NA
RCC_T5--4	chr11:209101	T	G	25	0.080	23	58.739	8.492	2	38.000	0.000	23	2	RIC8A	intronic	NA
RCC_T5--5	chr11:209101	T	G	32	0.062	29	49.724	9.031	2	35.500	3.536	29	2	RIC8A	intronic	NA
RCC_T5--6	chr11:209101	T	G	29	0.207	23	52.609	10.701	6	38.833	4.916	23	6	RIC8A	intronic	NA
RCC_T5--7	chr11:209101	T	G	23	0.043	22	55.909	10.574	1	38.000	0.000	22	1	RIC8A	intronic	NA
RCC_T5--GL	chr11:209101	T	NA	39	0	39	55.615	9.173	0	0	0	39	0	RIC8A	intronic	NA
RCC_T5--1	chr11:209107	T	NA	28	0	28	52.679	10.432	0	0	0	28	0	RIC8A	intronic	NA
RCC_T5--2	chr11:209107	T	G	28	0.071	26	55.462	11.161	2	48.000	16.971	26	2	RIC8A	intronic	NA
RCC_T5--3	chr11:209107	T	G	17	0.059	15	51.933	12.853	1	36.000	0.000	15	1	RIC8A	intronic	NA
RCC_T5--4	chr11:209107	T	G	27	0.037	26	55.654	9.899	1	36.000	0.000	26	1	RIC8A	intronic	NA
RCC_T5--5	chr11:209107	T	G	32	0.156	27	53.333	7.894	5	37.400	6.656	27	5	RIC8A	intronic	NA
RCC_T5--6	chr11:209107	T	G	32	0.188	26	54.000	10.334	6	35.500	1.225	26	6	RIC8A	intronic	NA
RCC_T5--7	chr11:209107	T	G	24	0.083	22	54.182	9.445	2	38.000	7.071	22	2	RIC8A	intronic	NA
RCC_T5--GL	chr11:209107	T	NA	38	0	38	55.658	9.430	0	0	0	38	0	RIC8A	intronic	NA
RCC_T5--1	chr11:224023	A	C	30	0.133	26	55.692	13.859	4	38.000	5.598	26	4	SIRT3	intronic	NA
RCC_T5--2	chr11:224023	A	C	31	0.032	30	63.333	12.130	1	33.000	0.000	30	1	SIRT3	intronic	NA
RCC_T5--3	chr11:224023	A	C	22	0.136	19	62.368	11.748	3	39.000	10.392	19	3	SIRT3	intronic	NA
RCC_T5--4	chr11:224023	A	C	25	0.080	23	59.130	11.482	2	34.500	2.121	23	2	SIRT3	intronic	NA
RCC_T5--5	chr11:224023	A	NA	27	0	27	63.667	9.899	0	0	0	27	0	SIRT3	intronic	NA
RCC_T5--6	chr11:224023	A	C	17	0.235	13	59.154	12.171	4	34.750	2.062	13	4	SIRT3	intronic	NA
RCC_T5--7	chr11:224023	A	C	27	0.037	26	58.769	11.343	1	33.000	0.000	26	1	SIRT3	intronic	NA
RCC_T5--GL	chr11:224023	A	NA	33	0	33	59.182	14.523	0	0	0	33	0	SIRT3	intronic	NA
RCC_T5--1	chr11:251002	A	T	20	0.050	19	57.526	8.630	1	39.000	0.000	19	1	PSMD13	intronic	NA
RCC_T5--2	chr11:251002	A	NA	22	0	21	60.333	5.808	0	0	0	21	0	PSMD13	intronic	NA
RCC_T5--3	chr11:251002	A	NA	28	0	26	58.308	8.470	0	0	0	26	0	PSMD13	intronic	NA
RCC_T5--4	chr11:251002	A	NA	20	0	20	59.150	8.008	0	0	0	20	0	PSMD13	intronic	NA
RCC_T5--5	chr11:251002	A	NA	38	0	37	59.054	8.021	0	0	0	37	0	PSMD13	intronic	NA
RCC_T5--6	chr11:251002	A	NA	21	0	20	59.450	9.406	0	0	0	20	0	PSMD13	intronic	NA
RCC_T5--7	chr11:251002	A	T	16	0.188	13	60.769	7.791	3	38.333	4.619	13	3	PSMD13	intronic	NA
RCC_T5--GL	chr11:251002	A	NA	36	0	35	58.829	8.913	0	0	0	35	0	PSMD13	intronic	NA
RCC_T5--1	chr11:46391594	A	C	26	0.115	23	60.522	6.367	3	33.000	0.000	23	3	DGKZ	intronic	NA
RCC_T5--2	chr11:46391594	A	C	39	0.051	37	58.135	10.907	2	36.000	4.243	37	2	DGKZ	intronic	NA
RCC_T5--3	chr11:46391594	A	C	29	0.034	28	54.607	11.328	1	33.000	0.000	28	1	DGKZ	intronic	NA
RCC_T5--4	chr11:46391594	A	C	27	0.074	24	60.250	7.714	2	36.500	0.707	24	2	DGKZ	intronic	NA
RCC_T5--5	chr11:46391594	A	NA	34	0	34	58.324	11.969	0	0	0	34	0	DGKZ	intronic	NA
RCC_T5--6	chr11:46391594	A	C	36	0.222	27	58.333	10.288	8	38.875	6.792	27	8	DGKZ	intronic	NA
RCC_T5--7	chr11:46391594	A	NA	28	0	28	56.036	11.890	0	0	0	28	0	DGKZ	intronic	NA
RCC_T5--GL	chr11:46391594	A	NA	39	0	39	58.487	9.846	0	0	0	39	0	DGKZ	intronic	NA
RCC_T5--1	chr1:146496543	C	NA	22	0	21	65.143	8.935	0	0	0	21	0	LOC728989	ncRNA_intronic	NA
RCC_T5--2	chr1:146496543	C	NA	16	0	16	62.875	10.398	0	0	0	16	0	LOC728989	ncRNA_intronic	NA
RCC_T5--3	chr1:146496543	C	NA	23	0	23	68.000	3.920	0	0	0	23	0	LOC728989	ncRNA_intronic	NA
RCC_T5--4	chr1:146496543	C	A	32	0.125	28	68.250	4.326	4	69.750	2.630	28	4	LOC728989	ncRNA_intronic	NA
RCC_T5--5	chr1:146496543	C	NA	20	0	20	64.700	6.473	0	0	0	20	0	LOC728989	ncRNA_intronic	NA
RCC_T5--6	chr1:146496543	C	NA	27	0	27	67.407	4.790	0	0	0	27	0	LOC728989	ncRNA_intronic	NA
RCC_T5--7	chr1:146496543	C	NA	22	0	22	67.455	3.876	0	0	0	22	0	LOC728989	ncRNA_intronic	NA
RCC_T5--GL	chr1:146496543	C	NA	46	0	46	66.804	7.004	0	0	0	46	0	LOC728989	ncRNA_intronic	NA
RCC_T5--1	chr11:46701333	T	G	34	0.118	30	60.833	9.606	4	34.500	3.000	30	4	ARHGAP1	intronic	NA
RCC_T5--2	chr11:46701333	T	G	32	0.062	30	57.833	12.427	2	35.000	2.828	30	2	ARHGAP1	intronic	NA
RCC_T5--3	chr11:46701333	T	G	21	0.048	20	65.700	5.352	1	36.000	0.000	20	1	ARHGAP1	intronic	NA
RCC_T5--4	chr11:46701333	T	G	31	0.065	29	56.621	12.863	2	33.000	0.000	29	2	ARHGAP1	intronic	NA
RCC_T5--5	chr11:46701333	T	G	28	0.179	23	59.130	10.976	5	36.200	4.087	23	5	ARHGAP1	intronic	NA
RCC_T5--6	chr11:46701333	T	G	23	0.043	22	62.636	8.682	1	33.000	0.000	22	1	ARHGAP1	intronic	NA
RCC_T5--7	chr11:46701333	T	G	37	0.108	33	59.848	13.734	4	35.000	2.309	33	4	ARHGAP1	intronic	NA
RCC_T5--GL	chr11:46701333	T	NA	33	0	33	65.455	8.864	0	0	0	33	0	ARHGAP1	intronic	NA
RCC_T5--1	chr1:150528592	T	G	19	0.053	18	54.389	10.891	1	33.000	0.000	18	1	ADAMTSL4	intronic	NA
RCC_T5--2	chr1:150528592	T	G	21	0.048	20	53.700	9.229	1	38.000	0.000	20	1	ADAMTSL4	intronic	NA
RCC_T5--3	chr1:150528592	T	G	17	0.176	14	56.786	8.135	3	42.000	4.583	14	3	ADAMTSL4	intronic	NA
RCC_T5--4	chr1:150528592	T	G	33	0.030	32	57.906	7.502	1	38.000	0.000	32	1	ADAMTSL4	intronic	NA
RCC_T5--5	chr1:150528592	T	NA	21	0	21	58.381	8.417	0	0	0	21	0	ADAMTSL4	intronic	NA
RCC_T5--6	chr1:150528592	T	NA	20	0	19	55.053	10.804	0	0	0	19	0	ADAMTSL4	intronic	NA
RCC_T5--7	chr1:150528592	T	NA	20	0	20	58.400	8.641	0	0	0	20	0	ADAMTSL4	intronic	NA
RCC_T5--GL	chr1:150528592	T	NA	43	0	42	58.738	8.751	0	0	0	42	0	ADAMTSL4	intronic	NA
RCC_T5--1	chr1:151260609	A	C	25	0.040	24	54.792	13.148	1	33.000	0.000	24	1	ZNF687	exonic	synonymous_SNV
RCC_T5--2	chr1:151260609	A	C	36	0.056	34	60.647	8.876	2	36.500	0.707	34	2	ZNF687	exonic	synonymous_SNV
RCC_T5--3	chr1:151260609	A	C	30	0.067	28	57.786	11.282	2	42.500	13.435	28	2	ZNF687	exonic	synonymous_SNV
RCC_T5--4	chr1:151260609	A	C	30	0.033	29	58.414	11.831	1	33.000	0.000	29	1	ZNF687	exonic	synonymous_SNV
RCC_T5--5	chr1:151260609	A	NA	30	0	30	57.100	11.436	0	0	0	30	0	ZNF687	exonic	synonymous_SNV
RCC_T5--6	chr1:151260609	A	C	28	0.214	22	61.136	9.553	6	33.000	0.000	22	6	ZNF687	exonic	synonymous_SNV
RCC_T5--7	chr1:151260609	A	NA	25	0	25	57.040	12.915	0	0	0	25	0	ZNF687	exonic	synonymous_SNV
RCC_T5--GL	chr1:151260609	A	NA	39	0	38	62.342	8.866	0	0	0	38	0	ZNF687	exonic	synonymous_SNV
RCC_T5--1	chr11:55606085	T	NA	26	0	26	67.462	5.595	0	0	0	26	0	OR5D16	upstream	NA
RCC_T5--2	chr11:55606085	T	NA	23	0	23	67.696	6.226	0	0	0	23	0	OR5D16	upstream	NA
RCC_T5--3	chr11:55606085	T	C	30	0.033	29	67.931	6.745	1	47.000	0.000	29	1	OR5D16	upstream	NA
RCC_T5--4	chr11:55606085	T	NA	34	0	34	68.941	3.064	0	0	0	34	0	OR5D16	upstream	NA
RCC_T5--5	chr11:55606085	T	NA	37	0	37	68.946	3.440	0	0	0	37	0	OR5D16	upstream	NA
RCC_T5--6	chr11:55606085	T	C	24	0.167	20	67.650	5.294	4	69.500	3.109	20	4	OR5D16	upstream	NA
RCC_T5--7	chr11:55606085	T	NA	22	0	22	67.909	8.275	0	0	0	22	0	OR5D16	upstream	NA
RCC_T5--GL	chr11:55606085	T	NA	35	0	35	69.286	2.793	0	0	0	35	0	OR5D16	upstream	NA
RCC_T5--1	chr11:558139	A	C	30	0.033	29	59.759	11.888	1	33.000	0.000	29	1	C11orf35	intronic	NA
RCC_T5--2	chr11:558139	A	C	23	0.043	21	61.000	13.229	1	45.000	0.000	21	1	C11orf35	intronic	NA
RCC_T5--3	chr11:558139	A	C	30	0.033	28	59.500	11.289	1	36.000	0.000	28	1	C11orf35	intronic	NA
RCC_T5--4	chr11:558139	A	C	23	0.043	22	62.773	10.295	1	36.000	0.000	22	1	C11orf35	intronic	NA
RCC_T5--5	chr11:558139	A	C	25	0.160	21	57.238	11.571	4	39.750	10.996	21	4	C11orf35	intronic	NA
RCC_T5--6	chr11:558139	A	C	28	0.071	26	59.000	11.859	2	39.000	8.485	26	2	C11orf35	intronic	NA
RCC_T5--7	chr11:558139	A	NA	20	0	20	61.650	10.985	0	0	0	20	0	C11orf35	intronic	NA
RCC_T5--GL	chr11:558139	A	NA	33	0	33	59.879	10.556	0	0	0	33	0	C11orf35	intronic	NA
RCC_T5--1	chr11:56511105	A	NA	136	0	136	66.353	6.842	0	0	0	136	0	OR9G4	exonic	synonymous_SNV
RCC_T5--2	chr11:56511105	A	NA	141	0	141	67.624	4.635	0	0	0	141	0	OR9G4	exonic	synonymous_SNV
RCC_T5--3	chr11:56511105	A	T	169	0.189	137	66.905	5.623	32	67.250	5.848	137	32	OR9G4	exonic	synonymous_SNV
RCC_T5--4	chr11:56511105	A	T	184	0.076	170	67.018	6.000	14	69.286	3.361	170	14	OR9G4	exonic	synonymous_SNV
RCC_T5--5	chr11:56511105	A	NA	135	0	135	67.281	5.051	0	0	0	135	0	OR9G4	exonic	synonymous_SNV
RCC_T5--6	chr11:56511105	A	NA	132	0	132	67.295	5.875	0	0	0	132	0	OR9G4	exonic	synonymous_SNV
RCC_T5--7	chr11:56511105	A	NA	138	0	138	67.246	3.928	0	0	0	138	0	OR9G4	exonic	synonymous_SNV
RCC_T5--GL	chr11:56511105	A	NA	148	0	148	66.534	6.838	0	0	0	148	0	OR9G4	exonic	synonymous_SNV
RCC_T5--1	chr1:156704095	C	NA	22	0	22	61.000	11.984	0	0	0	22	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--2	chr1:156704095	C	NA	19	0	19	57.684	13.458	0	0	0	19	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--3	chr1:156704095	C	T	17	0.176	14	66.857	2.878	3	60.000	9.539	14	3	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--4	chr1:156704095	C	NA	35	0	34	63.882	10.831	0	0	0	34	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--5	chr1:156704095	C	NA	21	0	21	64.619	7.953	0	0	0	21	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--6	chr1:156704095	C	NA	13	0	13	65.846	4.018	0	0	0	13	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--7	chr1:156704095	C	NA	24	0	24	64.458	7.740	0	0	0	24	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr1:156704095	C	NA	33	0	33	62.121	11.357	0	0	0	33	0	RRNAD1	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:57259333	A	C	27	0.074	25	58.880	9.884	2	38.000	1.414	25	2	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:57259333	A	C	30	0.200	23	60.783	8.738	6	34.833	2.041	23	6	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:57259333	A	NA	22	0	22	59.045	8.989	0	0	0	22	0	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:57259333	A	NA	23	0	23	58.174	9.810	0	0	0	23	0	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:57259333	A	NA	21	0	21	59.381	9.308	0	0	0	21	0	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:57259333	A	C	18	0.056	17	55.353	10.834	1	39.000	0.000	17	1	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:57259333	A	NA	14	0	14	58.857	10.121	0	0	0	14	0	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:57259333	A	NA	35	0	35	59.714	10.130	0	0	0	35	0	SLC43A1	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:157767935	A	NA	24	0	24	64.500	8.648	0	0	0	24	0	FCRL1	intronic	NA
RCC_T5--2	chr1:157767935	A	NA	31	0	31	67.452	3.139	0	0	0	31	0	FCRL1	intronic	NA
RCC_T5--3	chr1:157767935	A	NA	22	0	21	66.810	4.708	0	0	0	21	0	FCRL1	intronic	NA
RCC_T5--4	chr1:157767935	A	T	37	0.108	33	66.818	6.410	4	66.500	4.203	33	4	FCRL1	intronic	NA
RCC_T5--5	chr1:157767935	A	NA	36	0	36	66.361	5.426	0	0	0	36	0	FCRL1	intronic	NA
RCC_T5--6	chr1:157767935	A	NA	32	0	32	67.312	4.099	0	0	0	32	0	FCRL1	intronic	NA
RCC_T5--7	chr1:157767935	A	NA	32	0	32	67.750	3.690	0	0	0	32	0	FCRL1	intronic	NA
RCC_T5--GL	chr1:157767935	A	NA	43	0	43	66.558	7.004	0	0	0	43	0	FCRL1	intronic	NA
RCC_T5--1	chr1:15783117	C	NA	20	0	20	67.550	6.452	0	0	0	20	0	CELA2A	upstream	NA
RCC_T5--2	chr1:15783117	C	A	14	0.286	10	68.500	3.171	4	63.500	1.732	10	4	CELA2A	upstream	NA
RCC_T5--3	chr1:15783117	C	A	19	0.158	14	65.357	8.326	3	64.000	1.732	14	3	CELA2A	upstream	NA
RCC_T5--4	chr1:15783117	C	A	23	0.043	22	68.864	3.091	1	65.000	0.000	22	1	CELA2A	upstream	NA
RCC_T5--5	chr1:15783117	C	A	13	0.077	12	66.750	3.079	1	61.000	0.000	12	1	CELA2A	upstream	NA
RCC_T5--6	chr1:15783117	C	NA	19	0	18	66.944	6.503	0	0	0	18	0	CELA2A	upstream	NA
RCC_T5--7	chr1:15783117	C	A	14	0.071	13	68.308	4.151	1	65.000	0.000	13	1	CELA2A	upstream	NA
RCC_T5--GL	chr1:15783117	C	NA	35	0	33	64.636	9.614	0	0	0	33	0	CELA2A	upstream	NA
RCC_T5--1	chr11:61118455	A	C	22	0.045	21	63.095	7.516	1	33.000	0.000	21	1	CYB561A3	intronic	NA
RCC_T5--2	chr11:61118455	A	NA	35	0	35	65.714	5.706	0	0	0	35	0	CYB561A3	intronic	NA
RCC_T5--3	chr11:61118455	A	NA	26	0	26	65.962	7.017	0	0	0	26	0	CYB561A3	intronic	NA
RCC_T5--4	chr11:61118455	A	NA	52	0	50	66.140	6.128	0	0	0	50	0	CYB561A3	intronic	NA
RCC_T5--5	chr11:61118455	A	NA	44	0	44	64.705	8.220	0	0	0	44	0	CYB561A3	intronic	NA
RCC_T5--6	chr11:61118455	A	NA	36	0	36	65.806	6.654	0	0	0	36	0	CYB561A3	intronic	NA
RCC_T5--7	chr11:61118455	A	C	25	0.200	20	65.500	8.642	5	61.200	3.421	20	5	CYB561A3	intronic	NA
RCC_T5--GL	chr11:61118455	A	NA	33	0	33	65.000	5.793	0	0	0	33	0	CYB561A3	intronic	NA
RCC_T5--1	chr11:61118456	C	NA	24	0	24	63.375	9.045	0	0	0	24	0	CYB561A3	intronic	NA
RCC_T5--2	chr11:61118456	C	NA	35	0	35	67.514	3.936	0	0	0	35	0	CYB561A3	intronic	NA
RCC_T5--3	chr11:61118456	C	NA	26	0	26	66.615	6.184	0	0	0	26	0	CYB561A3	intronic	NA
RCC_T5--4	chr11:61118456	C	NA	50	0	50	65.420	8.266	0	0	0	50	0	CYB561A3	intronic	NA
RCC_T5--5	chr11:61118456	C	NA	44	0	43	66.767	4.314	0	0	0	43	0	CYB561A3	intronic	NA
RCC_T5--6	chr11:61118456	C	NA	37	0	37	67.216	4.541	0	0	0	37	0	CYB561A3	intronic	NA
RCC_T5--7	chr11:61118456	C	T	25	0.200	20	64.800	8.581	5	59.400	4.336	20	5	CYB561A3	intronic	NA
RCC_T5--GL	chr11:61118456	C	NA	33	0	33	66.273	4.564	0	0	0	33	0	CYB561A3	intronic	NA
RCC_T5--1	chr1:161130712	A	C	29	0.172	24	61.417	10.405	5	40.200	9.731	24	5	USP21	exonic	synonymous_SNV
RCC_T5--2	chr1:161130712	A	NA	28	0	28	61.000	9.133	0	0	0	28	0	USP21	exonic	synonymous_SNV
RCC_T5--3	chr1:161130712	A	C	25	0.040	23	58.522	10.440	1	37.000	0.000	23	1	USP21	exonic	synonymous_SNV
RCC_T5--4	chr1:161130712	A	NA	43	0	43	61.558	10.857	0	0	0	43	0	USP21	exonic	synonymous_SNV
RCC_T5--5	chr1:161130712	A	C	24	0.042	21	60.095	10.454	1	33.000	0.000	21	1	USP21	exonic	synonymous_SNV
RCC_T5--6	chr1:161130712	A	C	23	0.087	21	58.190	13.515	2	39.500	4.950	21	2	USP21	exonic	synonymous_SNV
RCC_T5--7	chr1:161130712	A	NA	23	0	23	59.696	10.451	0	0	0	23	0	USP21	exonic	synonymous_SNV
RCC_T5--GL	chr1:161130712	A	NA	33	0	33	56.636	12.316	0	0	0	33	0	USP21	exonic	synonymous_SNV
RCC_T5--1	chr1:161206169	G	T	18	0.056	16	63.312	9.286	1	39.000	0.000	16	1	NR1I3	intronic	NA
RCC_T5--2	chr1:161206169	G	NA	12	0	12	63.083	8.005	0	0	0	12	0	NR1I3	intronic	NA
RCC_T5--3	chr1:161206169	G	T	18	0.222	14	61.286	7.108	4	38.500	7.550	14	4	NR1I3	intronic	NA
RCC_T5--4	chr1:161206169	G	T	27	0.037	26	61.808	8.188	1	38.000	0.000	26	1	NR1I3	intronic	NA
RCC_T5--5	chr1:161206169	G	T	19	0.053	18	59.944	11.445	1	33.000	0.000	18	1	NR1I3	intronic	NA
RCC_T5--6	chr1:161206169	G	T	19	0.158	16	58.812	12.587	3	33.000	0.000	16	3	NR1I3	intronic	NA
RCC_T5--7	chr1:161206169	G	T	17	0.118	15	57.733	11.190	2	48.000	12.728	15	2	NR1I3	intronic	NA
RCC_T5--GL	chr1:161206169	G	NA	43	0	43	58.860	10.359	0	0	0	43	0	NR1I3	intronic	NA
RCC_T5--1	chr11:61553320	A	C	32	0.062	30	59.800	11.961	2	35.500	3.536	30	2	MYRF	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:61553320	A	C	37	0.189	30	61.700	7.675	7	39.857	4.947	30	7	MYRF	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:61553320	A	C	36	0.056	34	60.382	9.945	2	43.500	14.849	34	2	MYRF	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:61553320	A	C	49	0.082	45	60.622	9.074	4	36.750	2.500	45	4	MYRF	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:61553320	A	C	36	0.028	34	59.794	9.486	1	33.000	0.000	34	1	MYRF	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:61553320	A	C	38	0.053	35	64.200	8.878	2	45.500	10.607	35	2	MYRF	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:61553320	A	C	34	0.029	33	60.303	8.615	1	33.000	0.000	33	1	MYRF	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:61553320	A	NA	69	0	67	59.478	12.231	0	0	0	67	0	MYRF	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:62190620	G	T	102	0.118	90	63.833	9.933	12	64.917	4.274	90	12	SCGB1A1	UTR3	NA
RCC_T5--2	chr11:62190620	G	T	105	0.181	86	64.616	7.807	19	66.053	6.311	86	19	SCGB1A1	UTR3	NA
RCC_T5--3	chr11:62190620	G	T	91	0.110	81	65.506	8.310	10	64.400	4.858	81	10	SCGB1A1	UTR3	NA
RCC_T5--4	chr11:62190620	G	T	104	0.087	95	65.505	8.794	9	66.333	10.863	95	9	SCGB1A1	UTR3	NA
RCC_T5--5	chr11:62190620	G	T	87	0.287	60	64.083	9.302	25	66.440	4.174	60	25	SCGB1A1	UTR3	NA
RCC_T5--6	chr11:62190620	G	T	85	0.224	66	65.303	7.300	19	66.579	5.689	66	19	SCGB1A1	UTR3	NA
RCC_T5--7	chr11:62190620	G	T	102	0.324	69	66.841	4.963	33	67.273	7.081	69	33	SCGB1A1	UTR3	NA
RCC_T5--GL	chr11:62190620	G	NA	138	0	138	65.464	9.019	0	0	0	138	0	SCGB1A1	UTR3	NA
RCC_T5--1	chr11:63066241	C	G	15	0.467	8	68.500	3.546	7	66.714	4.821	8	7	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--2	chr11:63066241	C	G	29	0.276	21	68.952	3.556	8	65.000	9.381	21	8	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--3	chr11:63066241	C	G	27	0.148	23	65.391	7.953	4	67.500	5.802	23	4	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--4	chr11:63066241	C	G	28	0.107	24	67.333	7.007	3	66.333	5.132	24	3	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--5	chr11:63066241	C	G	28	0.321	19	68.526	4.414	9	71.111	0.928	19	9	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--6	chr11:63066241	C	G	31	0.032	30	69.400	3.811	1	68.000	0.000	30	1	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--7	chr11:63066241	C	G	29	0.276	21	68.952	2.854	8	69.375	3.378	21	8	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--GL	chr11:63066241	C	NA	39	0	39	68.256	3.545	0	0	0	39	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--1	chr11:63276126	A	NA	24	0	24	56.292	11.619	0	0	0	24	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--2	chr11:63276126	A	G	40	0.050	38	62.658	10.450	2	33.000	0.000	38	2	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--3	chr11:63276126	A	G	29	0.034	28	61.464	9.524	1	36.000	0.000	28	1	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--4	chr11:63276126	A	G	27	0.074	25	57.880	15.026	2	33.000	0.000	25	2	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--5	chr11:63276126	A	G	39	0.026	38	60.658	12.023	1	36.000	0.000	38	1	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--6	chr11:63276126	A	G	37	0.162	31	60.452	12.452	6	35.667	3.882	31	6	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--7	chr11:63276126	A	NA	37	0	37	60.081	9.233	0	0	0	37	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--GL	chr11:63276126	A	NA	50	0	49	59.959	11.639	0	0	0	49	0	MIR3680-1,MIR3680-2	ncRNA_intronic	NA
RCC_T5--1	chr11:64972122	C	NA	20	0	19	60.684	10.242	0	0	0	19	0	CAPN1	intronic	NA
RCC_T5--2	chr11:64972122	C	NA	25	0	25	64.160	7.793	0	0	0	25	0	CAPN1	intronic	NA
RCC_T5--3	chr11:64972122	C	NA	18	0	18	62.944	9.026	0	0	0	18	0	CAPN1	intronic	NA
RCC_T5--4	chr11:64972122	C	A	34	0.118	30	64.033	6.278	4	64.000	7.165	30	4	CAPN1	intronic	NA
RCC_T5--5	chr11:64972122	C	NA	19	0	19	64.895	4.701	0	0	0	19	0	CAPN1	intronic	NA
RCC_T5--6	chr11:64972122	C	NA	17	0	17	62.882	8.462	0	0	0	17	0	CAPN1	intronic	NA
RCC_T5--7	chr11:64972122	C	NA	21	0	21	66.143	3.651	0	0	0	21	0	CAPN1	intronic	NA
RCC_T5--GL	chr11:64972122	C	NA	35	0	35	65.343	5.133	0	0	0	35	0	CAPN1	intronic	NA
RCC_T5--1	chr11:64993198	C	T	12	0.167	10	68.100	2.234	2	60.500	6.364	10	2	SLC22A20	UTR3	NA
RCC_T5--2	chr11:64993198	C	T	22	0.091	20	68.200	3.764	2	64.000	1.414	20	2	SLC22A20	UTR3	NA
RCC_T5--3	chr11:64993198	C	T	19	0.158	16	69.062	2.235	3	64.667	4.163	16	3	SLC22A20	UTR3	NA
RCC_T5--4	chr11:64993198	C	T	16	0.125	14	67.143	4.276	2	53.500	3.536	14	2	SLC22A20	UTR3	NA
RCC_T5--5	chr11:64993198	C	T	17	0.118	15	65.667	9.424	2	61.000	7.071	15	2	SLC22A20	UTR3	NA
RCC_T5--6	chr11:64993198	C	T	13	0.077	12	68.917	2.575	1	66.000	0.000	12	1	SLC22A20	UTR3	NA
RCC_T5--7	chr11:64993198	C	T	17	0.118	15	65.200	9.829	2	65.000	0.000	15	2	SLC22A20	UTR3	NA
RCC_T5--GL	chr11:64993198	C	NA	36	0	36	68.556	4.246	0	0	0	36	0	SLC22A20	UTR3	NA
RCC_T5--1	chr11:65004211	C	NA	42	0	42	62.810	8.457	0	0	0	42	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--2	chr11:65004211	C	NA	31	0	31	59.452	11.346	0	0	0	31	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--3	chr11:65004211	C	NA	40	0	40	59.675	11.949	0	0	0	40	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--4	chr11:65004211	C	T	26	0.154	22	65.545	7.450	4	56.750	12.685	22	4	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--5	chr11:65004211	C	NA	49	0	49	62.571	8.832	0	0	0	49	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--6	chr11:65004211	C	NA	27	0	27	60.222	10.857	0	0	0	27	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--7	chr11:65004211	C	NA	32	0	32	60.688	10.117	0	0	0	32	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--GL	chr11:65004211	C	NA	70	0	70	63.529	8.459	0	0	0	70	0	SLC22A20(dist=10700),POLA2(dist=25221)	intergenic	NA
RCC_T5--1	chr11:65792720	C	A	40	0.025	38	63.395	9.214	1	33.000	0.000	38	1	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:65792720	C	NA	42	0	42	65.690	6.947	0	0	0	42	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:65792720	C	A	31	0.129	27	63.444	10.323	4	62.250	4.924	27	4	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:65792720	C	NA	32	0	32	65.625	7.559	0	0	0	32	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:65792720	C	NA	36	0	36	66.222	3.979	0	0	0	36	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:65792720	C	NA	38	0	38	65.868	6.452	0	0	0	38	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:65792720	C	NA	48	0	48	66.583	5.867	0	0	0	48	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:65792720	C	NA	57	0	57	68.649	3.543	0	0	0	57	0	CATSPER1	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:6631899	A	C	26	0.077	23	57.304	9.042	2	45.500	13.435	23	2	ILK	UTR3	NA
RCC_T5--2	chr11:6631899	A	C	20	0.250	15	60.667	6.715	5	34.800	1.643	15	5	ILK	UTR3	NA
RCC_T5--3	chr11:6631899	A	C	30	0.033	29	60.172	9.000	1	33.000	0.000	29	1	ILK	UTR3	NA
RCC_T5--4	chr11:6631899	A	C	39	0.051	37	59.811	8.547	2	34.500	2.121	37	2	ILK	UTR3	NA
RCC_T5--5	chr11:6631899	A	C	31	0.065	29	53.724	11.401	2	34.500	2.121	29	2	ILK	UTR3	NA
RCC_T5--6	chr11:6631899	A	C	36	0.083	33	54.909	11.580	3	38.667	3.786	33	3	ILK	UTR3	NA
RCC_T5--7	chr11:6631899	A	NA	21	0	21	56.524	11.860	0	0	0	21	0	ILK	UTR3	NA
RCC_T5--GL	chr11:6631899	A	NA	36	0	36	55.528	10.974	0	0	0	36	0	ILK	UTR3	NA
RCC_T5--1	chr11:6647287	C	NA	20	0	20	64.000	11.448	0	0	0	20	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:6647287	C	NA	23	0	22	66.773	4.070	0	0	0	22	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:6647287	C	NA	19	0	19	66.895	5.476	0	0	0	19	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:6647287	C	A	33	0.121	29	68.207	3.609	4	62.750	5.737	29	4	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:6647287	C	NA	18	0	18	65.333	8.938	0	0	0	18	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:6647287	C	NA	17	0	17	65.059	6.656	0	0	0	17	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:6647287	C	NA	21	0	21	67.810	3.750	0	0	0	21	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:6647287	C	NA	34	0	34	66.382	6.933	0	0	0	34	0	DCHS1	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:67049865	A	C	31	0.129	27	54.852	11.707	4	38.000	1.155	27	4	ADRBK1	intronic	NA
RCC_T5--2	chr11:67049865	A	C	30	0.067	28	57.179	10.414	2	35.000	2.828	28	2	ADRBK1	intronic	NA
RCC_T5--3	chr11:67049865	A	C	25	0.160	21	55.143	8.540	4	38.750	4.856	21	4	ADRBK1	intronic	NA
RCC_T5--4	chr11:67049865	A	NA	32	0	29	54.517	12.052	0	0	0	29	0	ADRBK1	intronic	NA
RCC_T5--5	chr11:67049865	A	C	42	0.119	37	56.405	12.859	5	36.600	1.342	37	5	ADRBK1	intronic	NA
RCC_T5--6	chr11:67049865	A	C	28	0.214	22	56.182	12.378	6	41.333	4.885	22	6	ADRBK1	intronic	NA
RCC_T5--7	chr11:67049865	A	NA	36	0	36	58.500	11.898	0	0	0	36	0	ADRBK1	intronic	NA
RCC_T5--GL	chr11:67049865	A	NA	35	0	35	57.000	12.379	0	0	0	35	0	ADRBK1	intronic	NA
RCC_T5--1	chr11:70789243	G	C	26	0.269	19	66.684	3.713	7	66.286	3.773	19	7	SHANK2	intronic	NA
RCC_T5--2	chr11:70789243	G	C	31	0.161	26	65.808	8.328	5	66.400	6.950	26	5	SHANK2	intronic	NA
RCC_T5--3	chr11:70789243	G	C	24	0.208	19	66.263	3.413	5	66.600	5.273	19	5	SHANK2	intronic	NA
RCC_T5--4	chr11:70789243	G	C	36	0.167	30	68.933	3.084	6	69.667	2.338	30	6	SHANK2	intronic	NA
RCC_T5--5	chr11:70789243	G	C	31	0.194	25	67.080	4.974	6	67.667	3.386	25	6	SHANK2	intronic	NA
RCC_T5--6	chr11:70789243	G	C	32	0.062	30	66.567	7.450	2	68.500	2.121	30	2	SHANK2	intronic	NA
RCC_T5--7	chr11:70789243	G	C	29	0.414	17	66.588	4.501	12	67.167	3.380	17	12	SHANK2	intronic	NA
RCC_T5--GL	chr11:70789243	G	NA	44	0	44	66.750	5.431	0	0	0	44	0	SHANK2	intronic	NA
RCC_T5--1	chr11:73801929	T	G	95	0.168	79	62.430	9.895	16	62.812	8.526	79	16	C2CD3	exonic	synonymous_SNV
RCC_T5--2	chr11:73801929	T	G	96	0.094	85	64.400	7.400	9	65.222	8.715	85	9	C2CD3	exonic	synonymous_SNV
RCC_T5--3	chr11:73801929	T	G	109	0.165	90	64.644	7.816	18	65.222	4.596	90	18	C2CD3	exonic	synonymous_SNV
RCC_T5--4	chr11:73801929	T	G	122	0.115	108	66.046	7.033	14	67.929	4.514	108	14	C2CD3	exonic	synonymous_SNV
RCC_T5--5	chr11:73801929	T	G	118	0.220	92	63.902	8.942	26	66.462	5.914	92	26	C2CD3	exonic	synonymous_SNV
RCC_T5--6	chr11:73801929	T	G	109	0.101	96	65.021	7.772	11	64.909	6.107	96	11	C2CD3	exonic	synonymous_SNV
RCC_T5--7	chr11:73801929	T	G	104	0.308	72	65.903	6.038	32	68.656	3.086	72	32	C2CD3	exonic	synonymous_SNV
RCC_T5--GL	chr11:73801929	T	NA	115	0	115	65.539	7.343	0	0	0	115	0	C2CD3	exonic	synonymous_SNV
RCC_T5--1	chr11:74336318	G	T	20	0.150	17	66.529	7.698	3	64.000	1.732	17	3	POLD3	intronic	NA
RCC_T5--2	chr11:74336318	G	T	15	0.133	13	66.462	5.125	2	64.500	0.707	13	2	POLD3	intronic	NA
RCC_T5--3	chr11:74336318	G	T	31	0.161	26	65.769	6.855	5	63.000	1.871	26	5	POLD3	intronic	NA
RCC_T5--4	chr11:74336318	G	T	23	0.043	22	68.091	4.628	1	65.000	0.000	22	1	POLD3	intronic	NA
RCC_T5--5	chr11:74336318	G	T	34	0.118	30	68.233	5.137	4	62.500	4.041	30	4	POLD3	intronic	NA
RCC_T5--6	chr11:74336318	G	T	16	0.062	15	67.800	3.707	1	64.000	0.000	15	1	POLD3	intronic	NA
RCC_T5--7	chr11:74336318	G	T	23	0.087	21	68.286	4.703	2	65.500	0.707	21	2	POLD3	intronic	NA
RCC_T5--GL	chr11:74336318	G	NA	36	0	36	68.528	3.342	0	0	0	36	0	POLD3	intronic	NA
RCC_T5--1	chr11:76928234	G	T	146	0.192	118	65.814	7.149	28	65.071	9.996	118	28	GDPD4	UTR3	NA
RCC_T5--2	chr11:76928234	G	T	149	0.128	130	66.623	7.943	19	68.053	4.089	130	19	GDPD4	UTR3	NA
RCC_T5--3	chr11:76928234	G	T	133	0.135	115	68.104	4.066	18	67.611	4.286	115	18	GDPD4	UTR3	NA
RCC_T5--4	chr11:76928234	G	T	153	0.144	131	66.924	7.271	22	69.091	3.915	131	22	GDPD4	UTR3	NA
RCC_T5--5	chr11:76928234	G	T	136	0.206	108	67.491	5.769	28	67.893	3.735	108	28	GDPD4	UTR3	NA
RCC_T5--6	chr11:76928234	G	T	112	0.179	92	67.196	6.647	20	65.650	9.756	92	20	GDPD4	UTR3	NA
RCC_T5--7	chr11:76928234	G	T	143	0.329	96	67.990	3.967	47	68.383	4.256	96	47	GDPD4	UTR3	NA
RCC_T5--GL	chr11:76928234	G	NA	129	0	129	68.171	5.359	0	0	0	129	0	GDPD4	UTR3	NA
RCC_T5--1	chr1:182499249	A	G	18	0.056	17	53.706	11.682	1	33.000	0.000	17	1	RGSL1	intronic	NA
RCC_T5--2	chr1:182499249	A	G	17	0.059	16	51.000	11.472	1	37.000	0.000	16	1	RGSL1	intronic	NA
RCC_T5--3	chr1:182499249	A	G	17	0.176	14	50.357	12.345	3	36.000	2.646	14	3	RGSL1	intronic	NA
RCC_T5--4	chr1:182499249	A	G	33	0.091	29	55.207	11.156	3	35.667	2.309	29	3	RGSL1	intronic	NA
RCC_T5--5	chr1:182499249	A	G	27	0.037	26	50.962	11.763	1	33.000	0.000	26	1	RGSL1	intronic	NA
RCC_T5--6	chr1:182499249	A	G	25	0.240	19	55.211	11.598	6	35.667	4.844	19	6	RGSL1	intronic	NA
RCC_T5--7	chr1:182499249	A	NA	18	0	18	56.722	12.413	0	0	0	18	0	RGSL1	intronic	NA
RCC_T5--GL	chr1:182499249	A	NA	34	0	34	51.559	10.378	0	0	0	34	0	RGSL1	intronic	NA
RCC_T5--1	chr1:1897773	T	G	20	0.100	18	53.389	13.151	2	34.500	2.121	18	2	KIAA1751	intronic	NA
RCC_T5--2	chr1:1897773	T	G	24	0.208	18	60.667	9.518	5	35.600	4.336	18	5	KIAA1751	intronic	NA
RCC_T5--3	chr1:1897773	T	G	21	0.143	18	52.611	12.889	3	40.000	9.644	18	3	KIAA1751	intronic	NA
RCC_T5--4	chr1:1897773	T	G	28	0.071	26	59.423	9.713	2	33.000	0.000	26	2	KIAA1751	intronic	NA
RCC_T5--5	chr1:1897773	T	G	31	0.065	29	54.690	11.161	2	38.000	7.071	29	2	KIAA1751	intronic	NA
RCC_T5--6	chr1:1897773	T	NA	17	0	16	56.062	12.008	0	0	0	16	0	KIAA1751	intronic	NA
RCC_T5--7	chr1:1897773	T	NA	26	0	26	57.346	12.743	0	0	0	26	0	KIAA1751	intronic	NA
RCC_T5--GL	chr1:1897773	T	NA	44	0	44	56.227	11.612	0	0	0	44	0	KIAA1751	intronic	NA
RCC_T5--1	chr11:9182384	C	T	85	0.153	72	65.764	7.151	13	58.154	13.898	72	13	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:9182384	C	T	107	0.178	87	67.379	6.757	19	65.789	8.094	87	19	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:9182384	C	T	84	0.143	72	66.583	7.831	12	65.333	4.519	72	12	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:9182384	C	T	79	0.152	67	66.746	7.123	12	67.083	3.679	67	12	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:9182384	C	T	99	0.162	83	67.301	5.293	16	65.500	6.208	83	16	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:9182384	C	T	88	0.170	72	66.389	7.008	15	63.133	9.694	72	15	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:9182384	C	T	86	0.221	66	66.212	6.892	19	65.737	7.773	66	19	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:9182384	C	NA	109	0	109	66.743	6.225	0	0	0	109	0	DENND5A	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:92600034	C	NA	29	0	29	58.621	13.508	0	0	0	29	0	FAT3	exonic	nonsynonymous_SNV
RCC_T5--2	chr11:92600034	C	G	40	0.025	39	56.077	14.434	1	33.000	0.000	39	1	FAT3	exonic	nonsynonymous_SNV
RCC_T5--3	chr11:92600034	C	G	28	0.071	26	62.423	11.666	2	33.000	0.000	26	2	FAT3	exonic	nonsynonymous_SNV
RCC_T5--4	chr11:92600034	C	G	27	0.037	26	57.154	13.514	1	33.000	0.000	26	1	FAT3	exonic	nonsynonymous_SNV
RCC_T5--5	chr11:92600034	C	G	39	0.205	31	54.774	14.908	8	33.000	0.000	31	8	FAT3	exonic	nonsynonymous_SNV
RCC_T5--6	chr11:92600034	C	G	24	0.042	23	57.870	13.039	1	33.000	0.000	23	1	FAT3	exonic	nonsynonymous_SNV
RCC_T5--7	chr11:92600034	C	G	40	0.075	37	56.838	13.843	3	35.000	3.464	37	3	FAT3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr11:92600034	C	NA	41	0	41	55.634	14.531	0	0	0	41	0	FAT3	exonic	nonsynonymous_SNV
RCC_T5--1	chr11:9456364	T	G	21	0.143	18	53.722	9.132	3	38.000	0.000	18	3	IPO7	intronic	NA
RCC_T5--2	chr11:9456364	T	G	28	0.036	27	56.926	8.961	1	38.000	0.000	27	1	IPO7	intronic	NA
RCC_T5--3	chr11:9456364	T	G	25	0.200	20	57.200	9.545	5	38.800	1.304	20	5	IPO7	intronic	NA
RCC_T5--4	chr11:9456364	T	NA	22	0	20	56.900	10.270	0	0	0	20	0	IPO7	intronic	NA
RCC_T5--5	chr11:9456364	T	G	31	0.097	25	55.960	8.979	3	38.000	0.000	25	3	IPO7	intronic	NA
RCC_T5--6	chr11:9456364	T	G	24	0.125	21	53.190	10.572	3	39.000	1.732	21	3	IPO7	intronic	NA
RCC_T5--7	chr11:9456364	T	NA	20	0	20	56.150	7.492	0	0	0	20	0	IPO7	intronic	NA
RCC_T5--GL	chr11:9456364	T	NA	46	0	45	57.111	8.329	0	0	0	45	0	IPO7	intronic	NA
RCC_T5--1	chr11:9547076	G	C	23	0.348	15	64.600	9.583	8	69.000	3.546	15	8	ZNF143	intronic	NA
RCC_T5--2	chr11:9547076	G	NA	18	0	18	68.111	3.359	0	0	0	18	0	ZNF143	intronic	NA
RCC_T5--3	chr11:9547076	G	C	25	0.120	22	67.000	4.840	3	64.333	4.041	22	3	ZNF143	intronic	NA
RCC_T5--4	chr11:9547076	G	C	27	0.111	24	65.417	7.235	3	64.333	8.327	24	3	ZNF143	intronic	NA
RCC_T5--5	chr11:9547076	G	C	28	0.036	27	67.963	4.686	1	70.000	0.000	27	1	ZNF143	intronic	NA
RCC_T5--6	chr11:9547076	G	C	15	0.133	13	68.154	4.758	2	65.500	0.707	13	2	ZNF143	intronic	NA
RCC_T5--7	chr11:9547076	G	C	16	0.250	12	68.250	4.003	4	68.750	3.304	12	4	ZNF143	intronic	NA
RCC_T5--GL	chr11:9547076	G	NA	44	0	44	67.841	5.473	0	0	0	44	0	ZNF143	intronic	NA
RCC_T5--1	chr1:197098902	T	NA	17	0	17	48.882	8.630	0	0	0	17	0	ASPM	intronic	NA
RCC_T5--2	chr1:197098902	T	G	15	0.200	12	53.083	10.638	3	38.333	1.155	12	3	ASPM	intronic	NA
RCC_T5--3	chr1:197098902	T	NA	29	0	27	54.704	9.384	0	0	0	27	0	ASPM	intronic	NA
RCC_T5--4	chr1:197098902	T	G	36	0.028	34	56.118	7.335	1	37.000	0.000	34	1	ASPM	intronic	NA
RCC_T5--5	chr1:197098902	T	G	23	0.043	22	51.864	10.167	1	46.000	0.000	22	1	ASPM	intronic	NA
RCC_T5--6	chr1:197098902	T	G	27	0.074	25	56.520	8.540	2	39.000	0.000	25	2	ASPM	intronic	NA
RCC_T5--7	chr1:197098902	T	NA	18	0	18	55.333	6.435	0	0	0	18	0	ASPM	intronic	NA
RCC_T5--GL	chr1:197098902	T	NA	37	0	35	56.314	8.080	0	0	0	35	0	ASPM	intronic	NA
RCC_T5--1	chr1:204086646	C	NA	13	0	13	67.538	3.777	0	0	0	13	0	SOX13	intronic	NA
RCC_T5--2	chr1:204086646	C	NA	22	0	22	68.591	2.873	0	0	0	22	0	SOX13	intronic	NA
RCC_T5--3	chr1:204086646	C	A	11	0.182	9	66.889	2.892	2	69.000	4.243	9	2	SOX13	intronic	NA
RCC_T5--4	chr1:204086646	C	NA	13	0	13	69.846	2.154	0	0	0	13	0	SOX13	intronic	NA
RCC_T5--5	chr1:204086646	C	NA	29	0	29	68.414	3.246	0	0	0	29	0	SOX13	intronic	NA
RCC_T5--6	chr1:204086646	C	NA	21	0	21	67.095	8.402	0	0	0	21	0	SOX13	intronic	NA
RCC_T5--7	chr1:204086646	C	NA	14	0	14	70.571	1.651	0	0	0	14	0	SOX13	intronic	NA
RCC_T5--GL	chr1:204086646	C	NA	34	0	34	66.765	4.665	0	0	0	34	0	SOX13	intronic	NA
RCC_T5--1	chr1:205561306	C	NA	32	0	32	62.844	9.106	0	0	0	32	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--2	chr1:205561306	C	NA	27	0	27	62.259	11.051	0	0	0	27	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--3	chr1:205561306	C	A	20	0.150	17	61.294	10.646	3	54.667	18.771	17	3	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--4	chr1:205561306	C	NA	36	0	36	66.833	3.194	0	0	0	36	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--5	chr1:205561306	C	NA	23	0	23	66.609	3.327	0	0	0	23	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--6	chr1:205561306	C	NA	25	0	25	64.680	7.279	0	0	0	25	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--7	chr1:205561306	C	NA	18	0	18	66.222	3.919	0	0	0	18	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr1:205561306	C	NA	51	0	51	65.490	6.417	0	0	0	51	0	MFSD4	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:206225156	T	G	44	0.068	41	53.902	11.991	3	34.000	1.732	41	3	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--2	chr1:206225156	T	G	44	0.091	39	57.103	13.082	4	42.000	6.481	39	4	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--3	chr1:206225156	T	G	51	0.137	44	56.705	13.780	7	41.571	7.091	44	7	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--4	chr1:206225156	T	NA	72	0	72	56.986	11.932	0	0	0	72	0	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--5	chr1:206225156	T	G	50	0.040	47	57.468	12.270	2	37.000	0.000	47	2	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--6	chr1:206225156	T	G	62	0.081	56	55.411	11.580	5	35.600	1.517	56	5	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--7	chr1:206225156	T	G	51	0.020	48	58.854	11.020	1	36.000	0.000	48	1	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr1:206225156	T	NA	70	0	70	56.957	11.953	0	0	0	70	0	AVPR1B	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:20664118	C	NA	28	0	28	62.500	10.916	0	0	0	28	0	VWA5B1	intronic	NA
RCC_T5--2	chr1:20664118	C	NA	31	0	31	67.710	3.237	0	0	0	31	0	VWA5B1	intronic	NA
RCC_T5--3	chr1:20664118	C	NA	31	0	31	66.290	5.126	0	0	0	31	0	VWA5B1	intronic	NA
RCC_T5--4	chr1:20664118	C	T	30	0.133	26	68.846	2.949	4	59.250	17.746	26	4	VWA5B1	intronic	NA
RCC_T5--5	chr1:20664118	C	NA	30	0	30	65.467	9.504	0	0	0	30	0	VWA5B1	intronic	NA
RCC_T5--6	chr1:20664118	C	NA	24	0	24	67.083	4.442	0	0	0	24	0	VWA5B1	intronic	NA
RCC_T5--7	chr1:20664118	C	NA	19	0	19	67.053	3.689	0	0	0	19	0	VWA5B1	intronic	NA
RCC_T5--GL	chr1:20664118	C	NA	49	0	49	67.469	5.631	0	0	0	49	0	VWA5B1	intronic	NA
RCC_T5--1	chr1:206647643	C	T	29	0.138	25	65.120	5.518	4	65.500	1.732	25	4	IKBKE	intronic	NA
RCC_T5--2	chr1:206647643	C	NA	43	0	43	63.721	9.852	0	0	0	43	0	IKBKE	intronic	NA
RCC_T5--3	chr1:206647643	C	NA	32	0	32	65.094	7.643	0	0	0	32	0	IKBKE	intronic	NA
RCC_T5--4	chr1:206647643	C	NA	45	0	45	65.356	8.603	0	0	0	45	0	IKBKE	intronic	NA
RCC_T5--5	chr1:206647643	C	NA	46	0	46	67.326	3.314	0	0	0	46	0	IKBKE	intronic	NA
RCC_T5--6	chr1:206647643	C	NA	43	0	43	65.395	6.444	0	0	0	43	0	IKBKE	intronic	NA
RCC_T5--7	chr1:206647643	C	NA	43	0	43	66.767	4.151	0	0	0	43	0	IKBKE	intronic	NA
RCC_T5--GL	chr1:206647643	C	NA	69	0	68	65.382	6.409	0	0	0	68	0	IKBKE	intronic	NA
RCC_T5--1	chr12:100550901	A	C	23	0.217	18	56.500	10.001	5	33.600	1.342	18	5	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--2	chr12:100550901	A	NA	31	0	31	56.871	9.929	0	0	0	31	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--3	chr12:100550901	A	C	31	0.032	30	57.167	11.888	1	36.000	0.000	30	1	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--4	chr12:100550901	A	NA	38	0	37	57.216	10.056	0	0	0	37	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--5	chr12:100550901	A	NA	24	0	23	58.609	10.646	0	0	0	23	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--6	chr12:100550901	A	NA	34	0	34	55.206	12.158	0	0	0	34	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--7	chr12:100550901	A	NA	26	0	25	53.160	10.538	0	0	0	25	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--GL	chr12:100550901	A	NA	34	0	33	54.939	12.240	0	0	0	33	0	GOLGA2P5	ncRNA_intronic	NA
RCC_T5--1	chr12:10312927	A	T	66	0.106	59	67.119	5.733	7	64.714	4.071	59	7	OLR1	intronic	NA
RCC_T5--2	chr12:10312927	A	T	82	0.195	66	67.485	5.765	16	68.688	3.420	66	16	OLR1	intronic	NA
RCC_T5--3	chr12:10312927	A	T	63	0.111	56	67.661	5.788	7	67.571	3.910	56	7	OLR1	intronic	NA
RCC_T5--4	chr12:10312927	A	T	82	0.134	71	68.366	3.784	11	67.364	4.653	71	11	OLR1	intronic	NA
RCC_T5--5	chr12:10312927	A	T	74	0.149	63	67.952	3.705	11	64.364	11.552	63	11	OLR1	intronic	NA
RCC_T5--6	chr12:10312927	A	T	64	0.109	57	67.368	5.921	7	69.286	3.302	57	7	OLR1	intronic	NA
RCC_T5--7	chr12:10312927	A	T	64	0.188	52	68.769	2.928	12	69.417	3.753	52	12	OLR1	intronic	NA
RCC_T5--GL	chr12:10312927	A	NA	118	0	118	67.958	3.692	0	0	0	118	0	OLR1	intronic	NA
RCC_T5--1	chr12:129360282	T	NA	23	0	23	56.478	9.972	0	0	0	23	0	GLT1D1	intronic	NA
RCC_T5--2	chr12:129360282	T	G	26	0.038	25	56.400	11.496	1	36.000	0.000	25	1	GLT1D1	intronic	NA
RCC_T5--3	chr12:129360282	T	G	25	0.120	22	57.182	11.375	3	38.667	3.786	22	3	GLT1D1	intronic	NA
RCC_T5--4	chr12:129360282	T	G	32	0.031	31	58.323	9.603	1	37.000	0.000	31	1	GLT1D1	intronic	NA
RCC_T5--5	chr12:129360282	T	G	20	0.100	17	54.235	10.866	2	33.000	0.000	17	2	GLT1D1	intronic	NA
RCC_T5--6	chr12:129360282	T	G	24	0.167	18	57.389	10.319	4	36.750	0.500	18	4	GLT1D1	intronic	NA
RCC_T5--7	chr12:129360282	T	NA	21	0	21	53.952	10.670	0	0	0	21	0	GLT1D1	intronic	NA
RCC_T5--GL	chr12:129360282	T	NA	38	0	37	57.703	10.883	0	0	0	37	0	GLT1D1	intronic	NA
RCC_T5--1	chr12:132393411	C	NA	23	0	23	56.957	13.357	0	0	0	23	0	ULK1	intronic	NA
RCC_T5--2	chr12:132393411	C	NA	17	0	17	57.176	14.757	0	0	0	17	0	ULK1	intronic	NA
RCC_T5--3	chr12:132393411	C	G	12	0.333	8	51.000	12.177	4	33.000	0.000	8	4	ULK1	intronic	NA
RCC_T5--4	chr12:132393411	C	NA	25	0	25	56.400	10.528	0	0	0	25	0	ULK1	intronic	NA
RCC_T5--5	chr12:132393411	C	G	24	0.083	22	59.136	11.757	2	33.000	0.000	22	2	ULK1	intronic	NA
RCC_T5--6	chr12:132393411	C	G	10	0.100	9	58.111	14.929	1	33.000	0.000	9	1	ULK1	intronic	NA
RCC_T5--7	chr12:132393411	C	NA	24	0	24	52.500	12.656	0	0	0	24	0	ULK1	intronic	NA
RCC_T5--GL	chr12:132393411	C	NA	35	0	35	56.800	12.785	0	0	0	35	0	ULK1	intronic	NA
RCC_T5--1	chr1:214781778	A	NA	32	0	31	55.129	12.971	0	0	0	31	0	CENPF	intronic	NA
RCC_T5--2	chr1:214781778	A	G	45	0.178	34	49.471	13.455	8	35.500	3.505	34	8	CENPF	intronic	NA
RCC_T5--3	chr1:214781778	A	G	34	0.088	30	50.633	11.883	3	34.000	1.732	30	3	CENPF	intronic	NA
RCC_T5--4	chr1:214781778	A	G	50	0.040	45	53.978	11.208	2	39.500	2.121	45	2	CENPF	intronic	NA
RCC_T5--5	chr1:214781778	A	G	45	0.044	41	55.146	11.512	2	41.000	4.243	41	2	CENPF	intronic	NA
RCC_T5--6	chr1:214781778	A	G	37	0.081	33	52.303	13.787	3	33.000	0.000	33	3	CENPF	intronic	NA
RCC_T5--7	chr1:214781778	A	G	46	0.087	40	55.375	12.072	4	36.750	2.630	40	4	CENPF	intronic	NA
RCC_T5--GL	chr1:214781778	A	NA	42	0	41	56.415	11.610	0	0	0	41	0	CENPF	intronic	NA
RCC_T5--1	chr1:214818616	A	C	167	0.144	143	65.783	7.679	24	67.708	7.006	143	24	CENPF	exonic	nonsynonymous_SNV
RCC_T5--2	chr1:214818616	A	C	174	0.138	150	67.853	5.454	24	68.500	3.575	150	24	CENPF	exonic	nonsynonymous_SNV
RCC_T5--3	chr1:214818616	A	C	182	0.088	166	67.536	5.645	16	63.500	10.991	166	16	CENPF	exonic	nonsynonymous_SNV
RCC_T5--4	chr1:214818616	A	C	243	0.132	210	68.700	3.851	32	67.156	7.419	210	32	CENPF	exonic	nonsynonymous_SNV
RCC_T5--5	chr1:214818616	A	C	166	0.120	146	68.226	4.587	20	66.650	4.738	146	20	CENPF	exonic	nonsynonymous_SNV
RCC_T5--6	chr1:214818616	A	C	187	0.118	165	67.764	5.529	22	67.364	8.039	165	22	CENPF	exonic	nonsynonymous_SNV
RCC_T5--7	chr1:214818616	A	C	158	0.411	93	68.161	3.585	65	67.292	6.735	93	65	CENPF	exonic	nonsynonymous_SNV
RCC_T5--GL	chr1:214818616	A	NA	252	0	252	67.996	5.364	0	0	0	252	0	CENPF	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:21546544	G	NA	27	0	27	61.519	8.040	0	0	0	27	0	ECE1	exonic	synonymous_SNV
RCC_T5--2	chr1:21546544	G	NA	35	0	35	61.200	8.811	0	0	0	35	0	ECE1	exonic	synonymous_SNV
RCC_T5--3	chr1:21546544	G	NA	26	0	26	60.962	7.389	0	0	0	26	0	ECE1	exonic	synonymous_SNV
RCC_T5--4	chr1:21546544	G	A	30	0.133	26	63.385	8.570	4	61.250	6.946	26	4	ECE1	exonic	synonymous_SNV
RCC_T5--5	chr1:21546544	G	NA	22	0	22	63.818	6.037	0	0	0	22	0	ECE1	exonic	synonymous_SNV
RCC_T5--6	chr1:21546544	G	NA	23	0	23	59.087	10.238	0	0	0	23	0	ECE1	exonic	synonymous_SNV
RCC_T5--7	chr1:21546544	G	NA	32	0	32	63.219	5.308	0	0	0	32	0	ECE1	exonic	synonymous_SNV
RCC_T5--GL	chr1:21546544	G	NA	43	0	42	64.262	4.418	0	0	0	42	0	ECE1	exonic	synonymous_SNV
RCC_T5--1	chr12:20705628	A	G	43	0.116	38	65.237	6.210	5	63.200	2.387	38	5	PDE3A	intronic	NA
RCC_T5--2	chr12:20705628	A	G	66	0.136	57	65.281	8.154	9	66.889	4.197	57	9	PDE3A	intronic	NA
RCC_T5--3	chr12:20705628	A	G	50	0.120	44	65.591	6.384	6	66.500	4.764	44	6	PDE3A	intronic	NA
RCC_T5--4	chr12:20705628	A	G	74	0.081	68	67.647	3.578	6	66.500	3.146	68	6	PDE3A	intronic	NA
RCC_T5--5	chr12:20705628	A	G	62	0.161	52	66.212	5.348	10	67.700	3.622	52	10	PDE3A	intronic	NA
RCC_T5--6	chr12:20705628	A	G	58	0.034	56	65.786	4.861	2	66.000	0.000	56	2	PDE3A	intronic	NA
RCC_T5--7	chr12:20705628	A	G	56	0.232	43	66.512	4.652	13	65.231	5.085	43	13	PDE3A	intronic	NA
RCC_T5--GL	chr12:20705628	A	NA	54	0	54	65.907	6.411	0	0	0	54	0	PDE3A	intronic	NA
RCC_T5--1	chr12:2797739	A	C	63	0.048	58	54.293	11.795	3	35.333	2.082	58	3	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--2	chr12:2797739	A	C	81	0.099	71	53.197	12.214	8	37.125	4.612	71	8	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--3	chr12:2797739	A	C	71	0.099	61	57.361	10.941	7	39.429	6.268	61	7	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--4	chr12:2797739	A	NA	89	0	89	56.888	10.047	0	0	0	89	0	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--5	chr12:2797739	A	C	80	0.025	76	56.671	11.480	2	40.000	4.243	76	2	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--6	chr12:2797739	A	C	88	0.136	75	54.680	11.582	12	36.333	4.207	75	12	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--7	chr12:2797739	A	NA	92	0	91	58.429	9.157	0	0	0	91	0	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--GL	chr12:2797739	A	NA	78	0	77	59.013	11.714	0	0	0	77	0	CACNA1C	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:228505771	G	A	48	0.021	47	63.681	8.328	1	69.000	0.000	47	1	OBSCN	exonic	synonymous_SNV
RCC_T5--2	chr1:228505771	G	A	44	0.114	39	65.692	5.468	5	55.200	16.392	39	5	OBSCN	exonic	synonymous_SNV
RCC_T5--3	chr1:228505771	G	NA	43	0	43	66.767	5.736	0	0	0	43	0	OBSCN	exonic	synonymous_SNV
RCC_T5--4	chr1:228505771	G	NA	42	0	42	64.286	8.915	0	0	0	42	0	OBSCN	exonic	synonymous_SNV
RCC_T5--5	chr1:228505771	G	NA	48	0	48	66.021	5.905	0	0	0	48	0	OBSCN	exonic	synonymous_SNV
RCC_T5--6	chr1:228505771	G	NA	49	0	49	64.551	6.325	0	0	0	49	0	OBSCN	exonic	synonymous_SNV
RCC_T5--7	chr1:228505771	G	NA	47	0	47	65.277	8.454	0	0	0	47	0	OBSCN	exonic	synonymous_SNV
RCC_T5--GL	chr1:228505771	G	NA	45	0	45	65.778	6.321	0	0	0	45	0	OBSCN	exonic	synonymous_SNV
RCC_T5--1	chr1:228529217	T	G	13	0.077	12	60.250	11.030	1	33.000	0.000	12	1	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--2	chr1:228529217	T	G	18	0.167	15	59.333	10.742	3	34.333	2.309	15	3	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--3	chr1:228529217	T	G	10	0.300	7	66.000	5.164	3	35.667	2.309	7	3	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--4	chr1:228529217	T	G	19	0.105	17	59.059	11.172	2	35.000	2.828	17	2	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--5	chr1:228529217	T	G	27	0.037	26	58.577	11.843	1	43.000	0.000	26	1	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--6	chr1:228529217	T	G	16	0.125	13	60.077	12.155	2	33.000	0.000	13	2	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--7	chr1:228529217	T	G	26	0.077	24	57.750	12.868	2	35.000	2.828	24	2	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--GL	chr1:228529217	T	NA	33	0	33	58.636	12.111	0	0	0	33	0	OBSCN	exonic	nonsynonymous_SNV
RCC_T5--1	chr1:229706257	G	A	16	0.188	13	64.462	4.875	3	60.000	4.583	13	3	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--2	chr1:229706257	G	NA	21	0	21	63.429	6.013	0	0	0	21	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--3	chr1:229706257	G	NA	15	0	15	63.733	8.285	0	0	0	15	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--4	chr1:229706257	G	A	28	0.036	27	60.407	10.001	1	71.000	0.000	27	1	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--5	chr1:229706257	G	NA	13	0	13	57.615	7.698	0	0	0	13	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--6	chr1:229706257	G	NA	17	0	17	62.824	7.804	0	0	0	17	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--7	chr1:229706257	G	NA	15	0	15	66.000	5.855	0	0	0	15	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--GL	chr1:229706257	G	NA	41	0	39	61.179	11.512	0	0	0	39	0	ABCB10(dist=11815),TAF5L(dist=22609)	intergenic	NA
RCC_T5--1	chr1:231360229	A	C	12	0.250	9	57.222	12.458	3	41.000	4.359	9	3	C1orf131	intronic	NA
RCC_T5--2	chr1:231360229	A	NA	11	0	11	58.727	7.669	0	0	0	11	0	C1orf131	intronic	NA
RCC_T5--3	chr1:231360229	A	NA	14	0	13	57.923	13.913	0	0	0	13	0	C1orf131	intronic	NA
RCC_T5--4	chr1:231360229	A	C	31	0.032	30	60.200	9.499	1	38.000	0.000	30	1	C1orf131	intronic	NA
RCC_T5--5	chr1:231360229	A	C	19	0.053	18	58.500	9.083	1	38.000	0.000	18	1	C1orf131	intronic	NA
RCC_T5--6	chr1:231360229	A	NA	26	0	26	61.538	7.768	0	0	0	26	0	C1orf131	intronic	NA
RCC_T5--7	chr1:231360229	A	NA	17	0	16	62.250	10.854	0	0	0	16	0	C1orf131	intronic	NA
RCC_T5--GL	chr1:231360229	A	NA	41	0	41	63.195	8.183	0	0	0	41	0	C1orf131	intronic	NA
RCC_T5--1	chr12:31600542	C	T	237	0.203	189	66.243	6.942	48	65.042	6.983	189	48	DENND5B	exonic	synonymous_SNV
RCC_T5--2	chr12:31600542	C	T	356	0.188	288	66.802	7.285	67	66.134	5.747	288	67	DENND5B	exonic	synonymous_SNV
RCC_T5--3	chr12:31600542	C	T	258	0.236	197	67.315	5.795	61	66.852	6.044	197	61	DENND5B	exonic	synonymous_SNV
RCC_T5--4	chr12:31600542	C	T	326	0.092	296	68.321	5.052	30	66.500	6.219	296	30	DENND5B	exonic	synonymous_SNV
RCC_T5--5	chr12:31600542	C	T	315	0.263	231	66.390	7.663	83	66.072	6.564	231	83	DENND5B	exonic	synonymous_SNV
RCC_T5--6	chr12:31600542	C	T	250	0.172	206	67.345	6.208	43	65.884	9.153	206	43	DENND5B	exonic	synonymous_SNV
RCC_T5--7	chr12:31600542	C	T	296	0.304	206	67.490	5.883	90	66.500	6.068	206	90	DENND5B	exonic	synonymous_SNV
RCC_T5--GL	chr12:31600542	C	NA	463	0	462	67.823	5.863	0	0	0	462	0	DENND5B	exonic	synonymous_SNV
RCC_T5--1	chr12:32225811	T	NA	22	0	22	59.455	10.914	0	0	0	22	0	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--2	chr12:32225811	T	G	28	0.179	23	62.087	10.233	5	36.400	3.130	23	5	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--3	chr12:32225811	T	NA	22	0	22	63.000	7.407	0	0	0	22	0	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--4	chr12:32225811	T	G	30	0.033	29	60.241	8.601	1	33.000	0.000	29	1	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--5	chr12:32225811	T	G	18	0.111	16	61.312	9.450	2	38.000	0.000	16	2	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--6	chr12:32225811	T	NA	22	0	22	62.182	9.854	0	0	0	22	0	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--7	chr12:32225811	T	G	22	0.045	21	59.476	11.741	1	39.000	0.000	21	1	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--GL	chr12:32225811	T	NA	40	0	40	63.075	8.453	0	0	0	40	0	RNU6-78P(dist=79009),BICD1(dist=34374)	intergenic	NA
RCC_T5--1	chr1:240306634	A	NA	33	0	33	63.455	10.698	0	0	0	33	0	FMN2	intronic	NA
RCC_T5--2	chr1:240306634	A	NA	35	0	35	65.829	5.227	0	0	0	35	0	FMN2	intronic	NA
RCC_T5--3	chr1:240306634	A	NA	38	0	38	67.026	5.829	0	0	0	38	0	FMN2	intronic	NA
RCC_T5--4	chr1:240306634	A	G	32	0.125	28	66.321	7.708	4	66.000	0.000	28	4	FMN2	intronic	NA
RCC_T5--5	chr1:240306634	A	NA	39	0	39	66.538	5.360	0	0	0	39	0	FMN2	intronic	NA
RCC_T5--6	chr1:240306634	A	NA	45	0	45	66.689	5.819	0	0	0	45	0	FMN2	intronic	NA
RCC_T5--7	chr1:240306634	A	NA	30	0	30	66.433	7.186	0	0	0	30	0	FMN2	intronic	NA
RCC_T5--GL	chr1:240306634	A	NA	52	0	52	64.269	9.862	0	0	0	52	0	FMN2	intronic	NA
RCC_T5--1	chr12:40740834	T	G	33	0.061	31	68.290	7.184	2	65.000	0.000	31	2	LRRK2	intronic	NA
RCC_T5--2	chr12:40740834	T	G	36	0.028	35	69.914	3.407	1	65.000	0.000	35	1	LRRK2	intronic	NA
RCC_T5--3	chr12:40740834	T	G	40	0.025	39	68.179	4.734	1	61.000	0.000	39	1	LRRK2	intronic	NA
RCC_T5--4	chr12:40740834	T	G	47	0.106	42	70.167	2.929	5	64.000	4.183	42	5	LRRK2	intronic	NA
RCC_T5--5	chr12:40740834	T	NA	37	0	37	69.432	5.014	0	0	0	37	0	LRRK2	intronic	NA
RCC_T5--6	chr12:40740834	T	G	32	0.156	27	69.852	5.127	5	64.800	2.168	27	5	LRRK2	intronic	NA
RCC_T5--7	chr12:40740834	T	NA	34	0	34	70.559	1.910	0	0	0	34	0	LRRK2	intronic	NA
RCC_T5--GL	chr12:40740834	T	NA	46	0	46	69.370	5.462	0	0	0	46	0	LRRK2	intronic	NA
RCC_T5--1	chr1:240933003	T	NA	64	0	64	66.625	7.588	0	0	0	64	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--2	chr1:240933003	T	NA	69	0	69	68.377	5.469	0	0	0	69	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--3	chr1:240933003	T	NA	69	0	69	67.841	5.614	0	0	0	69	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--4	chr1:240933003	T	NA	101	0	101	69.485	4.019	0	0	0	101	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--5	chr1:240933003	T	NA	66	0	66	67.288	5.143	0	0	0	66	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--6	chr1:240933003	T	A	68	0.132	59	67.661	6.219	9	69.333	3.640	59	9	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--7	chr1:240933003	T	NA	62	0	62	67.081	7.291	0	0	0	62	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--GL	chr1:240933003	T	NA	116	0	116	69.405	3.148	0	0	0	116	0	GREM2(dist=157541),RGS7(dist=5811)	intergenic	NA
RCC_T5--1	chr1:240962146	G	T	34	0.147	29	67.207	7.384	5	68.000	2.121	29	5	RGS7	intronic	NA
RCC_T5--2	chr1:240962146	G	T	43	0.163	36	69.444	2.932	7	68.429	4.504	36	7	RGS7	intronic	NA
RCC_T5--3	chr1:240962146	G	T	25	0.240	19	68.053	3.582	6	68.667	2.160	19	6	RGS7	intronic	NA
RCC_T5--4	chr1:240962146	G	T	45	0.044	43	68.674	3.980	2	72.000	0.000	43	2	RGS7	intronic	NA
RCC_T5--5	chr1:240962146	G	T	27	0.185	22	70.318	2.317	5	69.000	3.317	22	5	RGS7	intronic	NA
RCC_T5--6	chr1:240962146	G	T	41	0.244	31	69.968	2.614	10	69.900	2.961	31	10	RGS7	intronic	NA
RCC_T5--7	chr1:240962146	G	T	30	0.200	24	67.958	4.359	6	68.833	4.262	24	6	RGS7	intronic	NA
RCC_T5--GL	chr1:240962146	G	NA	46	0	46	69.435	3.045	0	0	0	46	0	RGS7	intronic	NA
RCC_T5--1	chr12:43828343	A	T	29	0.034	28	69.071	2.210	1	62.000	0.000	28	1	ADAMTS20	intronic	NA
RCC_T5--2	chr12:43828343	A	T	21	0.048	20	70.200	2.802	1	47.000	0.000	20	1	ADAMTS20	intronic	NA
RCC_T5--3	chr12:43828343	A	T	26	0.115	23	69.348	2.622	3	63.667	2.309	23	3	ADAMTS20	intronic	NA
RCC_T5--4	chr12:43828343	A	T	39	0.051	37	70.081	2.454	2	66.500	2.121	37	2	ADAMTS20	intronic	NA
RCC_T5--5	chr12:43828343	A	T	24	0.042	23	69.261	2.615	1	62.000	0.000	23	1	ADAMTS20	intronic	NA
RCC_T5--6	chr12:43828343	A	T	29	0.172	24	69.167	2.854	5	63.000	1.871	24	5	ADAMTS20	intronic	NA
RCC_T5--7	chr12:43828343	A	NA	11	0	11	66.182	6.997	0	0	0	11	0	ADAMTS20	intronic	NA
RCC_T5--GL	chr12:43828343	A	NA	41	0	41	69.439	3.564	0	0	0	41	0	ADAMTS20	intronic	NA
RCC_T5--1	chr1:246939477	C	NA	44	0	43	61.326	10.708	0	0	0	43	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--2	chr1:246939477	C	NA	53	0	53	60.472	10.818	0	0	0	53	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--3	chr1:246939477	C	NA	30	0	30	62.767	10.391	0	0	0	30	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--4	chr1:246939477	C	NA	42	0	42	64.881	7.868	0	0	0	42	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--5	chr1:246939477	C	NA	38	0	38	60.763	9.998	0	0	0	38	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--6	chr1:246939477	C	NA	36	0	36	61.750	10.120	0	0	0	36	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--7	chr1:246939477	C	T	33	0.182	27	65.630	4.482	6	48.667	17.212	27	6	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--GL	chr1:246939477	C	NA	33	0	33	62.606	8.906	0	0	0	33	0	SCCPDH(dist=8037),LOC149134(dist=13442)	intergenic	NA
RCC_T5--1	chr12:48554047	C	A	18	0.167	15	67.933	2.789	3	54.000	14.000	15	3	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--2	chr12:48554047	C	NA	27	0	27	67.593	6.259	0	0	0	27	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--3	chr12:48554047	C	NA	37	0	37	67.649	7.044	0	0	0	37	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--4	chr12:48554047	C	NA	37	0	37	67.459	5.414	0	0	0	37	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--5	chr12:48554047	C	NA	23	0	23	65.000	8.453	0	0	0	23	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--6	chr12:48554047	C	NA	19	0	19	67.579	4.087	0	0	0	19	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--7	chr12:48554047	C	NA	27	0	27	67.963	3.032	0	0	0	27	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--GL	chr12:48554047	C	NA	37	0	37	66.946	8.683	0	0	0	37	0	ASB8(dist=2670),C12orf68(dist=23319)	intergenic	NA
RCC_T5--1	chr1:248605312	T	A	81	0.148	69	62.594	9.414	12	65.917	4.926	69	12	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--2	chr1:248605312	T	A	82	0.073	76	66.526	5.536	6	69.333	2.805	76	6	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--3	chr1:248605312	T	A	76	0.171	63	66.651	4.870	13	65.538	6.887	63	13	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--4	chr1:248605312	T	A	98	0.153	83	66.952	5.657	15	67.333	4.370	83	15	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--5	chr1:248605312	T	A	71	0.183	57	64.526	7.614	13	68.231	4.549	57	13	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--6	chr1:248605312	T	A	91	0.154	77	65.623	6.554	14	64.143	7.502	77	14	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--7	chr1:248605312	T	A	96	0.188	78	65.564	6.755	18	67.611	4.217	78	18	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--GL	chr1:248605312	T	NA	110	0	110	67.309	6.949	0	0	0	110	0	OR2T1(dist=34907),OR2T2(dist=10787)	intergenic	NA
RCC_T5--1	chr12:57472517	T	C	18	0.056	17	58.294	12.082	1	33.000	0.000	17	1	TMEM194A	exonic	synonymous_SNV
RCC_T5--2	chr12:57472517	T	C	39	0.205	31	52.419	14.412	8	34.250	1.753	31	8	TMEM194A	exonic	synonymous_SNV
RCC_T5--3	chr12:57472517	T	C	40	0.125	35	58.486	12.641	5	34.200	1.643	35	5	TMEM194A	exonic	synonymous_SNV
RCC_T5--4	chr12:57472517	T	C	47	0.021	46	56.043	12.215	1	36.000	0.000	46	1	TMEM194A	exonic	synonymous_SNV
RCC_T5--5	chr12:57472517	T	C	42	0.048	40	56.450	11.743	2	36.000	0.000	40	2	TMEM194A	exonic	synonymous_SNV
RCC_T5--6	chr12:57472517	T	C	28	0.036	27	56.519	13.701	1	33.000	0.000	27	1	TMEM194A	exonic	synonymous_SNV
RCC_T5--7	chr12:57472517	T	C	47	0.085	43	56.791	12.365	4	35.500	1.732	43	4	TMEM194A	exonic	synonymous_SNV
RCC_T5--GL	chr12:57472517	T	NA	50	0	50	55.080	13.251	0	0	0	50	0	TMEM194A	exonic	synonymous_SNV
RCC_T5--1	chr12:57486589	A	NA	33	0	33	63.909	8.837	0	0	0	33	0	NAB2	intronic	NA
RCC_T5--2	chr12:57486589	A	NA	25	0	25	65.560	5.853	0	0	0	25	0	NAB2	intronic	NA
RCC_T5--3	chr12:57486589	A	NA	29	0	29	66.310	6.280	0	0	0	29	0	NAB2	intronic	NA
RCC_T5--4	chr12:57486589	A	NA	39	0	39	66.282	5.256	0	0	0	39	0	NAB2	intronic	NA
RCC_T5--5	chr12:57486589	A	NA	36	0	36	65.278	8.279	0	0	0	36	0	NAB2	intronic	NA
RCC_T5--6	chr12:57486589	A	NA	19	0	19	65.632	4.193	0	0	0	19	0	NAB2	intronic	NA
RCC_T5--7	chr12:57486589	A	C	27	0.185	22	65.182	5.569	5	65.000	2.236	22	5	NAB2	intronic	NA
RCC_T5--GL	chr12:57486589	A	NA	43	0	43	64.767	8.164	0	0	0	43	0	NAB2	intronic	NA
RCC_T5--1	chr12:57486590	G	NA	35	0	35	66.343	4.485	0	0	0	35	0	NAB2	intronic	NA
RCC_T5--2	chr12:57486590	G	NA	25	0	25	66.840	4.758	0	0	0	25	0	NAB2	intronic	NA
RCC_T5--3	chr12:57486590	G	NA	34	0	34	65.971	6.417	0	0	0	34	0	NAB2	intronic	NA
RCC_T5--4	chr12:57486590	G	NA	40	0	40	65.900	6.778	0	0	0	40	0	NAB2	intronic	NA
RCC_T5--5	chr12:57486590	G	NA	38	0	38	65.395	7.688	0	0	0	38	0	NAB2	intronic	NA
RCC_T5--6	chr12:57486590	G	NA	20	0	20	65.250	4.518	0	0	0	20	0	NAB2	intronic	NA
RCC_T5--7	chr12:57486590	G	T	27	0.185	22	66.409	3.775	5	64.400	2.510	22	5	NAB2	intronic	NA
RCC_T5--GL	chr12:57486590	G	NA	41	0	41	66.171	6.453	0	0	0	41	0	NAB2	intronic	NA
RCC_T5--1	chr12:57606341	C	NA	17	0	17	64.059	8.892	0	0	0	17	0	LRP1	UTR3	NA
RCC_T5--2	chr12:57606341	C	NA	17	0	17	65.765	4.323	0	0	0	17	0	LRP1	UTR3	NA
RCC_T5--3	chr12:57606341	C	T	11	0.182	9	60.111	10.775	2	60.000	7.071	9	2	LRP1	UTR3	NA
RCC_T5--4	chr12:57606341	C	NA	23	0	23	64.043	10.254	0	0	0	23	0	LRP1	UTR3	NA
RCC_T5--5	chr12:57606341	C	NA	24	0	24	66.000	4.890	0	0	0	24	0	LRP1	UTR3	NA
RCC_T5--6	chr12:57606341	C	NA	20	0	20	64.250	8.143	0	0	0	20	0	LRP1	UTR3	NA
RCC_T5--7	chr12:57606341	C	NA	13	0	13	64.692	4.871	0	0	0	13	0	LRP1	UTR3	NA
RCC_T5--GL	chr12:57606341	C	NA	38	0	38	65.000	7.480	0	0	0	38	0	LRP1	UTR3	NA
RCC_T5--1	chr12:6457802	C	A	20	0.050	19	64.947	6.884	1	41.000	0.000	19	1	SCNN1A	intronic	NA
RCC_T5--2	chr12:6457802	C	NA	18	0	17	61.824	10.466	0	0	0	17	0	SCNN1A	intronic	NA
RCC_T5--3	chr12:6457802	C	A	18	0.056	17	63.941	5.804	1	41.000	0.000	17	1	SCNN1A	intronic	NA
RCC_T5--4	chr12:6457802	C	A	15	0.200	12	62.333	10.866	3	39.333	1.528	12	3	SCNN1A	intronic	NA
RCC_T5--5	chr12:6457802	C	NA	25	0	24	59.917	9.031	0	0	0	24	0	SCNN1A	intronic	NA
RCC_T5--6	chr12:6457802	C	NA	21	0	21	61.810	11.822	0	0	0	21	0	SCNN1A	intronic	NA
RCC_T5--7	chr12:6457802	C	NA	23	0	23	65.261	6.804	0	0	0	23	0	SCNN1A	intronic	NA
RCC_T5--GL	chr12:6457802	C	NA	40	0	40	63.550	7.795	0	0	0	40	0	SCNN1A	intronic	NA
RCC_T5--1	chr12:6754380	T	G	16	0.125	14	58.000	10.138	2	49.000	16.971	14	2	ACRBP	intronic	NA
RCC_T5--2	chr12:6754380	T	G	32	0.062	30	55.167	11.928	2	35.000	2.828	30	2	ACRBP	intronic	NA
RCC_T5--3	chr12:6754380	T	G	30	0.067	28	59.214	8.342	2	33.000	0.000	28	2	ACRBP	intronic	NA
RCC_T5--4	chr12:6754380	T	G	26	0.038	25	54.000	12.708	1	33.000	0.000	25	1	ACRBP	intronic	NA
RCC_T5--5	chr12:6754380	T	G	22	0.045	21	59.762	11.000	1	33.000	0.000	21	1	ACRBP	intronic	NA
RCC_T5--6	chr12:6754380	T	G	20	0.200	16	59.688	9.823	4	37.500	4.123	16	4	ACRBP	intronic	NA
RCC_T5--7	chr12:6754380	T	NA	33	0	31	55.774	11.298	0	0	0	31	0	ACRBP	intronic	NA
RCC_T5--GL	chr12:6754380	T	NA	34	0	34	59.941	10.351	0	0	0	34	0	ACRBP	intronic	NA
RCC_T5--1	chr12:7818312	A	NA	12	0	12	64.333	7.832	0	0	0	12	0	APOBEC1	intronic	NA
RCC_T5--2	chr12:7818312	A	NA	26	0	26	64.846	9.019	0	0	0	26	0	APOBEC1	intronic	NA
RCC_T5--3	chr12:7818312	A	T	11	0.182	9	70.556	1.333	2	65.000	8.485	9	2	APOBEC1	intronic	NA
RCC_T5--4	chr12:7818312	A	NA	29	0	29	65.172	8.611	0	0	0	29	0	APOBEC1	intronic	NA
RCC_T5--5	chr12:7818312	A	NA	13	0	13	67.308	2.898	0	0	0	13	0	APOBEC1	intronic	NA
RCC_T5--6	chr12:7818312	A	NA	19	0	19	62.842	10.388	0	0	0	19	0	APOBEC1	intronic	NA
RCC_T5--7	chr12:7818312	A	NA	13	0	13	68.077	3.303	0	0	0	13	0	APOBEC1	intronic	NA
RCC_T5--GL	chr12:7818312	A	NA	44	0	44	67.886	3.712	0	0	0	44	0	APOBEC1	intronic	NA
RCC_T5--1	chr12:78225583	A	C	35	0.171	29	68.483	6.260	6	64.833	8.589	29	6	NAV3	intronic	NA
RCC_T5--2	chr12:78225583	A	C	31	0.226	24	69.875	2.787	7	68.143	6.768	24	7	NAV3	intronic	NA
RCC_T5--3	chr12:78225583	A	C	37	0.135	32	68.062	6.370	5	68.000	4.183	32	5	NAV3	intronic	NA
RCC_T5--4	chr12:78225583	A	C	59	0.102	53	69.132	4.620	6	66.833	6.463	53	6	NAV3	intronic	NA
RCC_T5--5	chr12:78225583	A	C	44	0.159	37	67.838	5.475	7	66.286	3.402	37	7	NAV3	intronic	NA
RCC_T5--6	chr12:78225583	A	C	49	0.102	44	68.614	4.952	5	66.600	6.387	44	5	NAV3	intronic	NA
RCC_T5--7	chr12:78225583	A	C	32	0.281	22	68.500	3.233	9	64.222	10.353	22	9	NAV3	intronic	NA
RCC_T5--GL	chr12:78225583	A	NA	66	0	66	68.909	3.645	0	0	0	66	0	NAV3	intronic	NA
RCC_T5--1	chr12:80201276	T	NA	40	0	40	64.300	7.868	0	0	0	40	0	PPP1R12A	intronic	NA
RCC_T5--2	chr12:80201276	T	C	29	0.034	28	65.536	5.288	1	68.000	0.000	28	1	PPP1R12A	intronic	NA
RCC_T5--3	chr12:80201276	T	C	51	0.020	50	64.060	6.241	1	65.000	0.000	50	1	PPP1R12A	intronic	NA
RCC_T5--4	chr12:80201276	T	C	46	0.043	44	65.318	6.250	2	65.000	4.243	44	2	PPP1R12A	intronic	NA
RCC_T5--5	chr12:80201276	T	NA	38	0	38	64.711	7.591	0	0	0	38	0	PPP1R12A	intronic	NA
RCC_T5--6	chr12:80201276	T	C	46	0.043	44	64.068	6.585	2	63.500	2.121	44	2	PPP1R12A	intronic	NA
RCC_T5--7	chr12:80201276	T	C	23	0.261	17	65.941	4.943	6	64.000	1.549	17	6	PPP1R12A	intronic	NA
RCC_T5--GL	chr12:80201276	T	NA	40	0	40	66.300	5.949	0	0	0	40	0	PPP1R12A	intronic	NA
RCC_T5--1	chr12:9020302	T	G	12	0.083	11	58.364	11.030	1	36.000	0.000	11	1	A2ML1	intronic	NA
RCC_T5--2	chr12:9020302	T	G	16	0.188	13	54.923	10.828	3	36.667	1.155	13	3	A2ML1	intronic	NA
RCC_T5--3	chr12:9020302	T	G	13	0.231	10	56.000	10.231	3	37.000	1.732	10	3	A2ML1	intronic	NA
RCC_T5--4	chr12:9020302	T	NA	19	0	19	55.895	9.814	0	0	0	19	0	A2ML1	intronic	NA
RCC_T5--5	chr12:9020302	T	G	13	0.077	12	57.083	9.385	1	33.000	0.000	12	1	A2ML1	intronic	NA
RCC_T5--6	chr12:9020302	T	NA	10	0	10	57.600	10.255	0	0	0	10	0	A2ML1	intronic	NA
RCC_T5--7	chr12:9020302	T	NA	13	0	13	52.846	12.362	0	0	0	13	0	A2ML1	intronic	NA
RCC_T5--GL	chr12:9020302	T	NA	35	0	34	58.382	9.293	0	0	0	34	0	A2ML1	intronic	NA
RCC_T5--1	chr13:111293903	T	C	155	0.206	122	61.000	10.200	32	64.844	7.616	122	32	CARS2	exonic	nonsynonymous_SNV
RCC_T5--2	chr13:111293903	T	C	145	0.193	117	64.504	7.107	28	63.321	9.306	117	28	CARS2	exonic	nonsynonymous_SNV
RCC_T5--3	chr13:111293903	T	C	136	0.147	114	63.061	8.414	20	66.500	7.273	114	20	CARS2	exonic	nonsynonymous_SNV
RCC_T5--4	chr13:111293903	T	C	176	0.119	155	64.594	6.305	21	65.476	5.537	155	21	CARS2	exonic	nonsynonymous_SNV
RCC_T5--5	chr13:111293903	T	C	164	0.201	130	62.108	8.406	33	62.394	10.479	130	33	CARS2	exonic	nonsynonymous_SNV
RCC_T5--6	chr13:111293903	T	C	153	0.163	127	62.205	8.635	25	63.720	8.811	127	25	CARS2	exonic	nonsynonymous_SNV
RCC_T5--7	chr13:111293903	T	C	162	0.302	112	64.232	6.758	49	65.837	5.367	112	49	CARS2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr13:111293903	T	NA	166	0	166	63.873	6.502	0	0	0	166	0	CARS2	exonic	nonsynonymous_SNV
RCC_T5--1	chr13:32981601	C	T	29	0.276	21	64.333	8.622	8	65.250	3.732	21	8	N4BP2L1	intronic	NA
RCC_T5--2	chr13:32981601	C	T	33	0.152	28	67.321	7.469	5	69.600	2.074	28	5	N4BP2L1	intronic	NA
RCC_T5--3	chr13:32981601	C	T	38	0.289	27	65.074	10.429	11	69.636	3.749	27	11	N4BP2L1	intronic	NA
RCC_T5--4	chr13:32981601	C	T	33	0.061	31	68.839	3.934	2	70.000	1.414	31	2	N4BP2L1	intronic	NA
RCC_T5--5	chr13:32981601	C	T	35	0.343	23	69.261	3.467	12	67.000	8.801	23	12	N4BP2L1	intronic	NA
RCC_T5--6	chr13:32981601	C	T	36	0.167	30	68.833	4.186	6	69.833	2.639	30	6	N4BP2L1	intronic	NA
RCC_T5--7	chr13:32981601	C	T	26	0.385	16	68.188	3.188	10	68.400	4.671	16	10	N4BP2L1	intronic	NA
RCC_T5--GL	chr13:32981601	C	NA	60	0	60	68.050	4.378	0	0	0	60	0	N4BP2L1	intronic	NA
RCC_T5--1	chr13:50299649	C	A	51	0.039	23	69.435	2.921	2	64.000	2.828	23	2	KPNA3	intronic	NA
RCC_T5--2	chr13:50299649	C	A	48	0.083	20	67.650	4.804	4	68.250	2.363	20	4	KPNA3	intronic	NA
RCC_T5--3	chr13:50299649	C	A	48	0.021	23	69.000	2.629	1	63.000	0.000	23	1	KPNA3	intronic	NA
RCC_T5--4	chr13:50299649	C	A	54	0.093	30	68.600	3.349	5	67.200	3.347	30	5	KPNA3	intronic	NA
RCC_T5--5	chr13:50299649	C	A	44	0.023	24	68.042	4.369	1	65.000	0.000	24	1	KPNA3	intronic	NA
RCC_T5--6	chr13:50299649	C	A	51	0.039	28	68.214	6.167	2	61.500	0.707	28	2	KPNA3	intronic	NA
RCC_T5--7	chr13:50299649	C	A	46	0.065	19	69.316	2.730	3	67.333	1.155	19	3	KPNA3	intronic	NA
RCC_T5--GL	chr13:50299649	C	NA	65	0	36	69.472	3.194	0	0	0	36	0	KPNA3	intronic	NA
RCC_T5--1	chr13:79766275	A	C	20	0.050	19	52.684	11.309	1	38.000	0.000	19	1	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--2	chr13:79766275	A	C	23	0.087	21	58.667	7.876	2	36.000	4.243	21	2	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--3	chr13:79766275	A	C	17	0.176	13	53.846	11.276	3	40.667	4.726	13	3	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--4	chr13:79766275	A	NA	18	0	17	57.118	9.380	0	0	0	17	0	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--5	chr13:79766275	A	NA	12	0	12	58.333	5.532	0	0	0	12	0	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--6	chr13:79766275	A	C	23	0.043	22	56.773	9.601	1	33.000	0.000	22	1	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--7	chr13:79766275	A	NA	23	0	23	53.304	10.070	0	0	0	23	0	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--GL	chr13:79766275	A	NA	37	0	37	54.216	8.772	0	0	0	37	0	LINC00331(dist=352090),RBM26(dist=126728)	intergenic	NA
RCC_T5--1	chr1:38078323	T	NA	42	0	42	53.690	12.242	0	0	0	42	0	RSPO1	UTR3	NA
RCC_T5--2	chr1:38078323	T	G	30	0.033	28	60.107	7.569	1	33.000	0.000	28	1	RSPO1	UTR3	NA
RCC_T5--3	chr1:38078323	T	G	28	0.214	22	55.273	8.860	6	36.500	2.739	22	6	RSPO1	UTR3	NA
RCC_T5--4	chr1:38078323	T	G	37	0.027	36	60.583	9.634	1	41.000	0.000	36	1	RSPO1	UTR3	NA
RCC_T5--5	chr1:38078323	T	G	45	0.044	42	58.690	8.038	2	40.000	9.899	42	2	RSPO1	UTR3	NA
RCC_T5--6	chr1:38078323	T	NA	36	0	36	56.694	8.944	0	0	0	36	0	RSPO1	UTR3	NA
RCC_T5--7	chr1:38078323	T	NA	33	0	33	61.273	7.225	0	0	0	33	0	RSPO1	UTR3	NA
RCC_T5--GL	chr1:38078323	T	NA	41	0	41	57.707	7.859	0	0	0	41	0	RSPO1	UTR3	NA
RCC_T5--1	chr13:90882859	A	NA	20	0	20	59.450	13.858	0	0	0	20	0	MIR622	upstream	NA
RCC_T5--2	chr13:90882859	A	G	17	0.235	13	64.077	5.469	4	34.250	2.500	13	4	MIR622	upstream	NA
RCC_T5--3	chr13:90882859	A	G	30	0.033	29	59.966	10.933	1	33.000	0.000	29	1	MIR622	upstream	NA
RCC_T5--4	chr13:90882859	A	NA	35	0	35	62.686	8.707	0	0	0	35	0	MIR622	upstream	NA
RCC_T5--5	chr13:90882859	A	NA	33	0	33	59.061	9.721	0	0	0	33	0	MIR622	upstream	NA
RCC_T5--6	chr13:90882859	A	G	31	0.032	30	63.433	7.186	1	33.000	0.000	30	1	MIR622	upstream	NA
RCC_T5--7	chr13:90882859	A	NA	25	0	25	62.800	9.129	0	0	0	25	0	MIR622	upstream	NA
RCC_T5--GL	chr13:90882859	A	NA	35	0	35	64.486	6.214	0	0	0	35	0	MIR622	upstream	NA
RCC_T5--1	chr13:95768002	C	NA	14	0	14	63.286	10.395	0	0	0	14	0	ABCC4	intronic	NA
RCC_T5--2	chr13:95768002	C	NA	13	0	13	67.538	3.865	0	0	0	13	0	ABCC4	intronic	NA
RCC_T5--3	chr13:95768002	C	NA	15	0	15	68.333	4.685	0	0	0	15	0	ABCC4	intronic	NA
RCC_T5--4	chr13:95768002	C	A	20	0.150	17	67.118	5.219	3	68.333	5.508	17	3	ABCC4	intronic	NA
RCC_T5--5	chr13:95768002	C	NA	20	0	20	65.800	8.160	0	0	0	20	0	ABCC4	intronic	NA
RCC_T5--6	chr13:95768002	C	NA	17	0	17	66.176	6.106	0	0	0	17	0	ABCC4	intronic	NA
RCC_T5--7	chr13:95768002	C	NA	17	0	17	67.941	2.926	0	0	0	17	0	ABCC4	intronic	NA
RCC_T5--GL	chr13:95768002	C	NA	36	0	36	66.139	8.191	0	0	0	36	0	ABCC4	intronic	NA
RCC_T5--1	chr1:39905038	G	T	79	0.139	68	64.897	8.480	11	67.091	6.395	68	11	MACF1	exonic	stopgain_SNV
RCC_T5--2	chr1:39905038	G	NA	85	0	85	68.224	4.863	0	0	0	85	0	MACF1	exonic	stopgain_SNV
RCC_T5--3	chr1:39905038	G	NA	78	0	78	66.744	6.737	0	0	0	78	0	MACF1	exonic	stopgain_SNV
RCC_T5--4	chr1:39905038	G	NA	99	0	99	68.273	4.499	0	0	0	99	0	MACF1	exonic	stopgain_SNV
RCC_T5--5	chr1:39905038	G	NA	67	0	67	67.299	4.380	0	0	0	67	0	MACF1	exonic	stopgain_SNV
RCC_T5--6	chr1:39905038	G	NA	81	0	81	69.333	2.302	0	0	0	81	0	MACF1	exonic	stopgain_SNV
RCC_T5--7	chr1:39905038	G	NA	72	0	72	68.583	5.101	0	0	0	72	0	MACF1	exonic	stopgain_SNV
RCC_T5--GL	chr1:39905038	G	NA	121	0	121	68.099	3.659	0	0	0	121	0	MACF1	exonic	stopgain_SNV
RCC_T5--1	chr14:100134515	T	G	20	0.350	13	64.308	9.123	7	35.857	1.345	13	7	HHIPL1	intronic	NA
RCC_T5--2	chr14:100134515	T	NA	18	0	18	65.556	4.527	0	0	0	18	0	HHIPL1	intronic	NA
RCC_T5--3	chr14:100134515	T	NA	24	0	24	64.542	4.736	0	0	0	24	0	HHIPL1	intronic	NA
RCC_T5--4	chr14:100134515	T	G	15	0.067	14	64.214	8.135	1	33.000	0.000	14	1	HHIPL1	intronic	NA
RCC_T5--5	chr14:100134515	T	G	22	0.136	19	58.684	11.949	3	35.000	1.732	19	3	HHIPL1	intronic	NA
RCC_T5--6	chr14:100134515	T	G	20	0.050	19	63.421	8.355	1	37.000	0.000	19	1	HHIPL1	intronic	NA
RCC_T5--7	chr14:100134515	T	G	17	0.118	15	62.600	9.014	2	33.000	0.000	15	2	HHIPL1	intronic	NA
RCC_T5--GL	chr14:100134515	T	NA	35	0	35	62.571	8.843	0	0	0	35	0	HHIPL1	intronic	NA
RCC_T5--1	chr14:103573738	A	C	23	0.130	20	64.950	8.823	3	33.000	0.000	20	3	EXOC3L4	intronic	NA
RCC_T5--2	chr14:103573738	A	C	24	0.042	22	59.364	11.842	1	33.000	0.000	22	1	EXOC3L4	intronic	NA
RCC_T5--3	chr14:103573738	A	C	18	0.222	14	61.786	10.416	4	35.250	2.630	14	4	EXOC3L4	intronic	NA
RCC_T5--4	chr14:103573738	A	C	28	0.071	26	54.846	13.959	2	36.000	0.000	26	2	EXOC3L4	intronic	NA
RCC_T5--5	chr14:103573738	A	C	22	0.091	20	56.900	11.580	2	36.000	0.000	20	2	EXOC3L4	intronic	NA
RCC_T5--6	chr14:103573738	A	C	13	0.077	12	59.250	12.786	1	33.000	0.000	12	1	EXOC3L4	intronic	NA
RCC_T5--7	chr14:103573738	A	C	25	0.040	24	60.833	11.005	1	33.000	0.000	24	1	EXOC3L4	intronic	NA
RCC_T5--GL	chr14:103573738	A	NA	33	0	33	59.333	13.742	0	0	0	33	0	EXOC3L4	intronic	NA
RCC_T5--1	chr14:104053476	A	NA	10	0	10	67.300	4.373	0	0	0	10	0	APOPT1	intronic	NA
RCC_T5--2	chr14:104053476	A	NA	15	0	15	68.467	3.114	0	0	0	15	0	APOPT1	intronic	NA
RCC_T5--3	chr14:104053476	A	NA	10	0	10	68.100	3.635	0	0	0	10	0	APOPT1	intronic	NA
RCC_T5--4	chr14:104053476	A	NA	17	0	17	68.941	3.799	0	0	0	17	0	APOPT1	intronic	NA
RCC_T5--5	chr14:104053476	A	NA	14	0	14	68.214	4.660	0	0	0	14	0	APOPT1	intronic	NA
RCC_T5--6	chr14:104053476	A	NA	16	0	16	68.938	3.235	0	0	0	16	0	APOPT1	intronic	NA
RCC_T5--7	chr14:104053476	A	G	11	0.364	7	68.286	3.861	4	66.750	0.500	7	4	APOPT1	intronic	NA
RCC_T5--GL	chr14:104053476	A	NA	49	0	49	66.633	7.050	0	0	0	49	0	APOPT1	intronic	NA
RCC_T5--1	chr14:104139290	T	G	24	0.042	23	56.913	6.862	1	33.000	0.000	23	1	KLC1	intronic	NA
RCC_T5--2	chr14:104139290	T	G	30	0.067	27	57.704	8.236	2	36.000	4.243	27	2	KLC1	intronic	NA
RCC_T5--3	chr14:104139290	T	G	18	0.222	13	56.462	9.744	4	34.000	2.000	13	4	KLC1	intronic	NA
RCC_T5--4	chr14:104139290	T	NA	23	0	23	58.783	7.816	0	0	0	23	0	KLC1	intronic	NA
RCC_T5--5	chr14:104139290	T	NA	18	0	17	52.471	10.823	0	0	0	17	0	KLC1	intronic	NA
RCC_T5--6	chr14:104139290	T	G	22	0.091	19	52.526	10.757	2	33.000	0.000	19	2	KLC1	intronic	NA
RCC_T5--7	chr14:104139290	T	NA	16	0	15	54.200	8.687	0	0	0	15	0	KLC1	intronic	NA
RCC_T5--GL	chr14:104139290	T	NA	48	0	48	56.667	8.101	0	0	0	48	0	KLC1	intronic	NA
RCC_T5--1	chr14:22671087	A	NA	60	0	60	66.083	7.831	0	0	0	60	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--2	chr14:22671087	A	NA	56	0	56	68.304	3.633	0	0	0	56	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--3	chr14:22671087	A	NA	67	0	67	67.194	4.346	0	0	0	67	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--4	chr14:22671087	A	NA	64	0	64	68.844	3.892	0	0	0	64	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--5	chr14:22671087	A	NA	68	0	68	67.015	4.631	0	0	0	68	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--6	chr14:22671087	A	NA	57	0	57	67.228	4.009	0	0	0	57	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--7	chr14:22671087	A	G	50	0.260	36	67.583	5.495	13	69.154	2.544	36	13	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--GL	chr14:22671087	A	NA	63	0	63	67.889	6.350	0	0	0	63	0	OR4E2(dist=536849),DAD1(dist=362720)	intergenic	NA
RCC_T5--1	chr14:22987747	A	G	18	0.111	16	58.500	12.982	2	33.000	0.000	16	2	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--2	chr14:22987747	A	G	19	0.105	17	61.353	9.137	2	35.000	2.828	17	2	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--3	chr14:22987747	A	G	16	0.250	12	60.083	11.349	4	34.500	1.732	12	4	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--4	chr14:22987747	A	NA	26	0	26	62.654	8.323	0	0	0	26	0	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--5	chr14:22987747	A	NA	21	0	21	63.095	7.803	0	0	0	21	0	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--6	chr14:22987747	A	G	11	0.091	10	61.500	9.835	1	33.000	0.000	10	1	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--7	chr14:22987747	A	NA	20	0	20	59.050	10.118	0	0	0	20	0	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--GL	chr14:22987747	A	NA	34	0	34	57.853	11.394	0	0	0	34	0	OR4E2(dist=853509),DAD1(dist=46060)	intergenic	NA
RCC_T5--1	chr14:23538654	A	C	45	0.067	41	62.829	12.292	3	34.333	2.309	41	3	ACIN1	intronic	NA
RCC_T5--2	chr14:23538654	A	C	27	0.185	22	59.045	13.510	5	34.200	1.643	22	5	ACIN1	intronic	NA
RCC_T5--3	chr14:23538654	A	C	33	0.030	32	61.938	9.817	1	49.000	0.000	32	1	ACIN1	intronic	NA
RCC_T5--4	chr14:23538654	A	NA	52	0	51	61.490	11.587	0	0	0	51	0	ACIN1	intronic	NA
RCC_T5--5	chr14:23538654	A	NA	36	0	36	62.722	10.595	0	0	0	36	0	ACIN1	intronic	NA
RCC_T5--6	chr14:23538654	A	C	42	0.095	38	60.316	12.792	4	38.000	3.367	38	4	ACIN1	intronic	NA
RCC_T5--7	chr14:23538654	A	NA	34	0	34	62.471	10.323	0	0	0	34	0	ACIN1	intronic	NA
RCC_T5--GL	chr14:23538654	A	NA	51	0	51	65.706	9.770	0	0	0	51	0	ACIN1	intronic	NA
RCC_T5--1	chr14:50809538	T	G	28	0.071	26	53.846	9.918	2	37.000	0.000	26	2	CDKL1	intronic	NA
RCC_T5--2	chr14:50809538	T	G	33	0.030	29	51.793	9.748	1	37.000	0.000	29	1	CDKL1	intronic	NA
RCC_T5--3	chr14:50809538	T	G	17	0.176	14	50.857	10.855	3	37.667	1.155	14	3	CDKL1	intronic	NA
RCC_T5--4	chr14:50809538	T	G	35	0.029	33	55.697	9.422	1	37.000	0.000	33	1	CDKL1	intronic	NA
RCC_T5--5	chr14:50809538	T	G	40	0.050	38	54.842	8.952	2	35.000	2.828	38	2	CDKL1	intronic	NA
RCC_T5--6	chr14:50809538	T	G	26	0.192	21	55.905	8.324	5	39.000	4.243	21	5	CDKL1	intronic	NA
RCC_T5--7	chr14:50809538	T	G	22	0.045	21	54.952	9.276	1	37.000	0.000	21	1	CDKL1	intronic	NA
RCC_T5--GL	chr14:50809538	T	NA	49	0	49	56.898	8.432	0	0	0	49	0	CDKL1	intronic	NA
RCC_T5--1	chr14:58608254	T	NA	19	0	19	61.632	9.447	0	0	0	19	0	C14orf37	intronic	NA
RCC_T5--2	chr14:58608254	T	NA	17	0	17	62.471	8.538	0	0	0	17	0	C14orf37	intronic	NA
RCC_T5--3	chr14:58608254	T	NA	20	0	20	65.450	5.907	0	0	0	20	0	C14orf37	intronic	NA
RCC_T5--4	chr14:58608254	T	C	26	0.154	22	64.773	9.421	4	63.500	6.557	22	4	C14orf37	intronic	NA
RCC_T5--5	chr14:58608254	T	NA	20	0	20	61.550	10.008	0	0	0	20	0	C14orf37	intronic	NA
RCC_T5--6	chr14:58608254	T	NA	12	0	12	60.333	10.075	0	0	0	12	0	C14orf37	intronic	NA
RCC_T5--7	chr14:58608254	T	NA	11	0	11	61.636	10.966	0	0	0	11	0	C14orf37	intronic	NA
RCC_T5--GL	chr14:58608254	T	NA	37	0	37	64.595	7.305	0	0	0	37	0	C14orf37	intronic	NA
RCC_T5--1	chr14:59820504	T	G	17	0.294	11	49.727	10.011	5	38.400	4.278	11	5	DAAM1	intronic	NA
RCC_T5--2	chr14:59820504	T	G	11	0.091	10	50.200	12.318	1	36.000	0.000	10	1	DAAM1	intronic	NA
RCC_T5--3	chr14:59820504	T	G	13	0.077	12	50.250	10.780	1	37.000	0.000	12	1	DAAM1	intronic	NA
RCC_T5--4	chr14:59820504	T	G	23	0.043	22	54.727	8.402	1	37.000	0.000	22	1	DAAM1	intronic	NA
RCC_T5--5	chr14:59820504	T	NA	22	0	22	48.227	10.109	0	0	0	22	0	DAAM1	intronic	NA
RCC_T5--6	chr14:59820504	T	NA	21	0	21	49.333	10.209	0	0	0	21	0	DAAM1	intronic	NA
RCC_T5--7	chr14:59820504	T	G	12	0.083	11	53.455	6.138	1	36.000	0.000	11	1	DAAM1	intronic	NA
RCC_T5--GL	chr14:59820504	T	NA	34	0	34	50.147	10.765	0	0	0	34	0	DAAM1	intronic	NA
RCC_T5--1	chr14:74976767	A	G	33	0.030	32	61.469	9.052	1	33.000	0.000	32	1	LTBP2	intronic	NA
RCC_T5--2	chr14:74976767	A	G	26	0.231	20	63.950	10.506	6	36.333	6.408	20	6	LTBP2	intronic	NA
RCC_T5--3	chr14:74976767	A	NA	12	0	12	58.083	12.965	0	0	0	12	0	LTBP2	intronic	NA
RCC_T5--4	chr14:74976767	A	G	25	0.040	24	62.875	9.724	1	46.000	0.000	24	1	LTBP2	intronic	NA
RCC_T5--5	chr14:74976767	A	G	40	0.050	37	61.054	12.423	2	39.500	9.192	37	2	LTBP2	intronic	NA
RCC_T5--6	chr14:74976767	A	G	31	0.097	27	52.296	15.104	3	34.333	2.309	27	3	LTBP2	intronic	NA
RCC_T5--7	chr14:74976767	A	G	15	0.067	13	60.308	10.111	1	37.000	0.000	13	1	LTBP2	intronic	NA
RCC_T5--GL	chr14:74976767	A	NA	43	0	43	59.512	11.572	0	0	0	43	0	LTBP2	intronic	NA
RCC_T5--1	chr14:74988630	C	NA	27	0	27	60.593	11.382	0	0	0	27	0	LTBP2	exonic	synonymous_SNV
RCC_T5--2	chr14:74988630	C	NA	36	0	36	61.806	8.488	0	0	0	36	0	LTBP2	exonic	synonymous_SNV
RCC_T5--3	chr14:74988630	C	NA	14	0	14	64.000	10.168	0	0	0	14	0	LTBP2	exonic	synonymous_SNV
RCC_T5--4	chr14:74988630	C	T	24	0.167	20	66.750	4.471	4	68.500	3.512	20	4	LTBP2	exonic	synonymous_SNV
RCC_T5--5	chr14:74988630	C	NA	37	0	37	63.757	8.735	0	0	0	37	0	LTBP2	exonic	synonymous_SNV
RCC_T5--6	chr14:74988630	C	NA	25	0	25	64.840	4.939	0	0	0	25	0	LTBP2	exonic	synonymous_SNV
RCC_T5--7	chr14:74988630	C	NA	16	0	16	61.938	7.716	0	0	0	16	0	LTBP2	exonic	synonymous_SNV
RCC_T5--GL	chr14:74988630	C	NA	42	0	42	64.905	8.407	0	0	0	42	0	LTBP2	exonic	synonymous_SNV
RCC_T5--1	chr14:91770162	T	G	23	0.043	22	57.409	11.827	1	33.000	0.000	22	1	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--2	chr14:91770162	T	G	34	0.059	31	59.258	13.191	2	33.000	0.000	31	2	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--3	chr14:91770162	T	NA	18	0	18	57.778	11.358	0	0	0	18	0	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--4	chr14:91770162	T	NA	20	0	20	58.050	12.738	0	0	0	20	0	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--5	chr14:91770162	T	NA	35	0	34	57.500	12.932	0	0	0	34	0	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--6	chr14:91770162	T	G	28	0.214	22	58.000	11.259	6	34.167	1.835	22	6	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--7	chr14:91770162	T	G	33	0.061	31	57.129	10.683	2	39.000	8.485	31	2	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--GL	chr14:91770162	T	NA	53	0	52	55.827	12.423	0	0	0	52	0	CCDC88C	exonic	nonsynonymous_SNV
RCC_T5--1	chr14:91942990	A	NA	14	0	14	60.929	10.042	0	0	0	14	0	SMEK1	intronic	NA
RCC_T5--2	chr14:91942990	A	C	14	0.286	10	59.000	8.498	4	34.750	2.062	10	4	SMEK1	intronic	NA
RCC_T5--3	chr14:91942990	A	C	27	0.074	25	61.200	8.636	2	35.000	2.828	25	2	SMEK1	intronic	NA
RCC_T5--4	chr14:91942990	A	C	25	0.040	24	57.292	11.790	1	33.000	0.000	24	1	SMEK1	intronic	NA
RCC_T5--5	chr14:91942990	A	NA	15	0	15	54.600	11.903	0	0	0	15	0	SMEK1	intronic	NA
RCC_T5--6	chr14:91942990	A	C	18	0.056	17	60.588	10.852	1	37.000	0.000	17	1	SMEK1	intronic	NA
RCC_T5--7	chr14:91942990	A	NA	16	0	16	56.938	10.402	0	0	0	16	0	SMEK1	intronic	NA
RCC_T5--GL	chr14:91942990	A	NA	37	0	37	57.514	9.803	0	0	0	37	0	SMEK1	intronic	NA
RCC_T5--1	chr14:92055912	C	A	93	0.172	77	67.013	7.265	16	66.125	7.974	77	16	CATSPERB	exonic	synonymous_SNV
RCC_T5--2	chr14:92055912	C	NA	98	0	98	68.663	4.102	0	0	0	98	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--3	chr14:92055912	C	NA	107	0	107	67.477	4.843	0	0	0	107	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--4	chr14:92055912	C	NA	113	0	113	68.761	4.089	0	0	0	113	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--5	chr14:92055912	C	A	116	0.121	102	68.373	4.235	14	65.929	5.413	102	14	CATSPERB	exonic	synonymous_SNV
RCC_T5--6	chr14:92055912	C	NA	108	0	108	67.694	4.433	0	0	0	108	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--7	chr14:92055912	C	NA	96	0	96	67.562	5.623	0	0	0	96	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--GL	chr14:92055912	C	NA	158	0	158	68.892	4.327	0	0	0	158	0	CATSPERB	exonic	synonymous_SNV
RCC_T5--1	chr15:22955090	T	C	37	0.162	29	59.138	10.656	6	60.667	14.152	29	6	CYFIP1	intronic	NA
RCC_T5--2	chr15:22955090	T	C	36	0.139	30	57.533	10.572	5	65.800	1.304	30	5	CYFIP1	intronic	NA
RCC_T5--3	chr15:22955090	T	C	28	0.143	22	59.409	8.942	4	63.750	7.632	22	4	CYFIP1	intronic	NA
RCC_T5--4	chr15:22955090	T	C	28	0.107	25	61.560	6.820	3	63.333	6.028	25	3	CYFIP1	intronic	NA
RCC_T5--5	chr15:22955090	T	C	37	0.243	27	61.370	8.798	9	62.444	6.386	27	9	CYFIP1	intronic	NA
RCC_T5--6	chr15:22955090	T	C	26	0.038	24	56.000	10.608	1	71.000	0.000	24	1	CYFIP1	intronic	NA
RCC_T5--7	chr15:22955090	T	C	20	0.300	14	58.071	8.827	6	65.833	6.014	14	6	CYFIP1	intronic	NA
RCC_T5--GL	chr15:22955090	T	NA	62	0	62	59.113	9.672	0	0	0	62	0	CYFIP1	intronic	NA
RCC_T5--1	chr15:26866717	A	C	32	0.094	27	51.889	10.282	3	36.333	3.055	27	3	GABRB3	intronic	NA
RCC_T5--2	chr15:26866717	A	C	39	0.077	34	54.647	8.334	3	35.667	2.309	34	3	GABRB3	intronic	NA
RCC_T5--3	chr15:26866717	A	C	47	0.170	39	53.333	8.812	8	37.250	1.909	39	8	GABRB3	intronic	NA
RCC_T5--4	chr15:26866717	A	C	59	0.068	54	56.130	9.204	4	39.500	3.786	54	4	GABRB3	intronic	NA
RCC_T5--5	chr15:26866717	A	C	43	0.116	38	54.474	10.459	5	38.000	4.796	38	5	GABRB3	intronic	NA
RCC_T5--6	chr15:26866717	A	C	32	0.062	30	53.133	10.837	2	35.000	2.828	30	2	GABRB3	intronic	NA
RCC_T5--7	chr15:26866717	A	C	55	0.109	47	55.426	9.107	6	39.333	5.820	47	6	GABRB3	intronic	NA
RCC_T5--GL	chr15:26866717	A	NA	57	0	56	56.089	9.237	0	0	0	56	0	GABRB3	intronic	NA
RCC_T5--1	chr15:33218594	T	NA	25	0	25	67.520	7.212	0	0	0	25	0	FMN1	intronic	NA
RCC_T5--2	chr15:33218594	T	NA	17	0	17	69.765	3.270	0	0	0	17	0	FMN1	intronic	NA
RCC_T5--3	chr15:33218594	T	C	18	0.222	14	69.286	3.646	4	63.500	1.732	14	4	FMN1	intronic	NA
RCC_T5--4	chr15:33218594	T	C	16	0.125	14	69.000	6.861	2	65.000	0.000	14	2	FMN1	intronic	NA
RCC_T5--5	chr15:33218594	T	C	17	0.059	16	66.750	4.612	1	62.000	0.000	16	1	FMN1	intronic	NA
RCC_T5--6	chr15:33218594	T	NA	26	0	26	69.423	3.838	0	0	0	26	0	FMN1	intronic	NA
RCC_T5--7	chr15:33218594	T	NA	18	0	18	68.833	2.995	0	0	0	18	0	FMN1	intronic	NA
RCC_T5--GL	chr15:33218594	T	NA	39	0	39	69.897	2.303	0	0	0	39	0	FMN1	intronic	NA
RCC_T5--1	chr15:34127080	A	C	108	0.167	90	66.833	6.119	18	66.833	7.649	90	18	RYR3	intronic	NA
RCC_T5--2	chr15:34127080	A	C	90	0.178	74	67.459	5.070	16	68.688	4.512	74	16	RYR3	intronic	NA
RCC_T5--3	chr15:34127080	A	C	100	0.210	79	67.797	5.217	21	68.571	3.370	79	21	RYR3	intronic	NA
RCC_T5--4	chr15:34127080	A	C	111	0.117	98	68.980	3.488	13	67.308	4.498	98	13	RYR3	intronic	NA
RCC_T5--5	chr15:34127080	A	C	118	0.203	94	66.298	6.914	24	69.667	3.046	94	24	RYR3	intronic	NA
RCC_T5--6	chr15:34127080	A	C	92	0.098	82	68.134	4.268	9	69.000	1.658	82	9	RYR3	intronic	NA
RCC_T5--7	chr15:34127080	A	C	99	0.333	66	67.742	5.663	33	68.879	2.987	66	33	RYR3	intronic	NA
RCC_T5--GL	chr15:34127080	A	NA	171	0	171	67.754	5.638	0	0	0	171	0	RYR3	intronic	NA
RCC_T5--1	chr15:41145472	A	C	29	0.241	22	54.182	11.304	7	34.286	2.360	22	7	SPINT1	intronic	NA
RCC_T5--2	chr15:41145472	A	C	32	0.062	29	54.103	10.893	2	35.000	2.828	29	2	SPINT1	intronic	NA
RCC_T5--3	chr15:41145472	A	C	45	0.022	44	56.886	10.316	1	33.000	0.000	44	1	SPINT1	intronic	NA
RCC_T5--4	chr15:41145472	A	C	44	0.045	41	57.488	10.868	2	34.500	2.121	41	2	SPINT1	intronic	NA
RCC_T5--5	chr15:41145472	A	C	42	0.071	39	56.103	11.964	3	35.333	2.082	39	3	SPINT1	intronic	NA
RCC_T5--6	chr15:41145472	A	NA	40	0	40	53.075	12.851	0	0	0	40	0	SPINT1	intronic	NA
RCC_T5--7	chr15:41145472	A	C	31	0.032	30	55.667	10.327	1	36.000	0.000	30	1	SPINT1	intronic	NA
RCC_T5--GL	chr15:41145472	A	NA	59	0	59	54.881	10.482	0	0	0	59	0	SPINT1	intronic	NA
RCC_T5--1	chr15:41853526	A	G	24	0.042	23	61.043	13.513	1	36.000	0.000	23	1	TYRO3	intronic	NA
RCC_T5--2	chr15:41853526	A	G	25	0.040	24	58.750	13.801	1	33.000	0.000	24	1	TYRO3	intronic	NA
RCC_T5--3	chr15:41853526	A	G	24	0.208	19	62.632	11.567	5	33.600	1.342	19	5	TYRO3	intronic	NA
RCC_T5--4	chr15:41853526	A	G	18	0.056	17	67.059	3.929	1	36.000	0.000	17	1	TYRO3	intronic	NA
RCC_T5--5	chr15:41853526	A	G	34	0.029	32	61.500	12.056	1	33.000	0.000	32	1	TYRO3	intronic	NA
RCC_T5--6	chr15:41853526	A	G	16	0.062	15	63.133	13.174	1	33.000	0.000	15	1	TYRO3	intronic	NA
RCC_T5--7	chr15:41853526	A	G	28	0.036	27	61.222	12.420	1	46.000	0.000	27	1	TYRO3	intronic	NA
RCC_T5--GL	chr15:41853526	A	NA	34	0	34	64.000	8.449	0	0	0	34	0	TYRO3	intronic	NA
RCC_T5--1	chr15:42105093	T	G	39	0.077	36	54.611	10.726	3	35.000	1.732	36	3	MAPKBP1	intronic	NA
RCC_T5--2	chr15:42105093	T	G	34	0.059	31	55.935	10.661	2	36.000	0.000	31	2	MAPKBP1	intronic	NA
RCC_T5--3	chr15:42105093	T	G	30	0.067	28	52.429	11.670	2	34.500	2.121	28	2	MAPKBP1	intronic	NA
RCC_T5--4	chr15:42105093	T	G	41	0.024	40	57.600	8.714	1	36.000	0.000	40	1	MAPKBP1	intronic	NA
RCC_T5--5	chr15:42105093	T	NA	43	0	43	54.023	11.323	0	0	0	43	0	MAPKBP1	intronic	NA
RCC_T5--6	chr15:42105093	T	G	31	0.194	25	52.920	10.962	6	38.667	9.585	25	6	MAPKBP1	intronic	NA
RCC_T5--7	chr15:42105093	T	G	39	0.077	35	54.914	9.877	3	36.000	0.000	35	3	MAPKBP1	intronic	NA
RCC_T5--GL	chr15:42105093	T	NA	64	0	64	54.266	9.789	0	0	0	64	0	MAPKBP1	intronic	NA
RCC_T5--1	chr15:42462150	T	A	27	0.074	25	63.600	9.443	2	44.000	7.071	25	2	VPS39	intronic	NA
RCC_T5--2	chr15:42462150	T	NA	22	0	22	58.955	13.047	0	0	0	22	0	VPS39	intronic	NA
RCC_T5--3	chr15:42462150	T	A	18	0.111	16	61.938	10.142	2	35.500	3.536	16	2	VPS39	intronic	NA
RCC_T5--4	chr15:42462150	T	A	33	0.030	32	58.656	12.712	1	38.000	0.000	32	1	VPS39	intronic	NA
RCC_T5--5	chr15:42462150	T	A	24	0.042	22	59.500	12.731	1	38.000	0.000	22	1	VPS39	intronic	NA
RCC_T5--6	chr15:42462150	T	A	22	0.182	18	60.389	12.789	4	41.250	6.500	18	4	VPS39	intronic	NA
RCC_T5--7	chr15:42462150	T	A	23	0.174	19	58.737	13.089	4	38.500	0.577	19	4	VPS39	intronic	NA
RCC_T5--GL	chr15:42462150	T	NA	41	0	41	55.415	13.809	0	0	0	41	0	VPS39	intronic	NA
RCC_T5--1	chr15:60644024	G	A	39	0.026	38	59.368	13.556	1	58.000	0.000	38	1	ANXA2	intronic	NA
RCC_T5--2	chr15:60644024	G	A	45	0.111	40	66.225	8.285	5	33.000	0.000	40	5	ANXA2	intronic	NA
RCC_T5--3	chr15:60644024	G	A	44	0.023	43	61.023	13.662	1	37.000	0.000	43	1	ANXA2	intronic	NA
RCC_T5--4	chr15:60644024	G	A	63	0.063	59	61.102	12.209	4	37.000	5.657	59	4	ANXA2	intronic	NA
RCC_T5--5	chr15:60644024	G	NA	60	0	59	61.407	12.079	0	0	0	59	0	ANXA2	intronic	NA
RCC_T5--6	chr15:60644024	G	A	55	0.200	44	63.795	10.496	11	36.273	4.901	44	11	ANXA2	intronic	NA
RCC_T5--7	chr15:60644024	G	A	59	0.085	54	61.815	11.628	5	34.600	2.191	54	5	ANXA2	intronic	NA
RCC_T5--GL	chr15:60644024	G	NA	64	0	64	59.156	14.018	0	0	0	64	0	ANXA2	intronic	NA
RCC_T5--1	chr15:62168178	A	NA	20	0	19	54.947	8.650	0	0	0	19	0	VPS13C	intronic	NA
RCC_T5--2	chr15:62168178	A	C	23	0.043	22	56.545	10.122	1	39.000	0.000	22	1	VPS13C	intronic	NA
RCC_T5--3	chr15:62168178	A	C	25	0.040	22	55.091	7.621	1	62.000	0.000	22	1	VPS13C	intronic	NA
RCC_T5--4	chr15:62168178	A	C	21	0.048	20	56.600	6.731	1	39.000	0.000	20	1	VPS13C	intronic	NA
RCC_T5--5	chr15:62168178	A	NA	18	0	18	54.556	10.601	0	0	0	18	0	VPS13C	intronic	NA
RCC_T5--6	chr15:62168178	A	C	17	0.235	13	60.000	5.831	4	42.250	4.992	13	4	VPS13C	intronic	NA
RCC_T5--7	chr15:62168178	A	NA	19	0	19	61.789	5.483	0	0	0	19	0	VPS13C	intronic	NA
RCC_T5--GL	chr15:62168178	A	NA	33	0	33	57.667	8.809	0	0	0	33	0	VPS13C	intronic	NA
RCC_T5--1	chr15:65625603	A	C	25	0.200	20	60.500	8.654	5	42.200	10.521	20	5	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--2	chr15:65625603	A	C	32	0.062	30	60.567	10.461	2	33.000	0.000	30	2	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--3	chr15:65625603	A	NA	22	0	22	58.909	11.621	0	0	0	22	0	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--4	chr15:65625603	A	NA	32	0	32	61.188	8.844	0	0	0	32	0	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--5	chr15:65625603	A	NA	35	0	35	60.886	10.892	0	0	0	35	0	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--6	chr15:65625603	A	NA	25	0	25	61.760	8.671	0	0	0	25	0	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--7	chr15:65625603	A	C	40	0.025	39	61.359	7.329	1	38.000	0.000	39	1	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr15:65625603	A	NA	36	0	36	58.556	10.497	0	0	0	36	0	IGDCC3	exonic	nonsynonymous_SNV
RCC_T5--1	chr15:68126058	A	NA	63	0	63	59.317	11.713	0	0	0	63	0	SKOR1	intronic	NA
RCC_T5--2	chr15:68126058	A	C	37	0.081	33	61.939	9.324	3	35.333	2.082	33	3	SKOR1	intronic	NA
RCC_T5--3	chr15:68126058	A	C	46	0.130	39	61.231	8.794	6	38.500	7.204	39	6	SKOR1	intronic	NA
RCC_T5--4	chr15:68126058	A	C	65	0.031	63	61.127	9.815	2	34.500	2.121	63	2	SKOR1	intronic	NA
RCC_T5--5	chr15:68126058	A	C	39	0.026	38	57.658	11.276	1	33.000	0.000	38	1	SKOR1	intronic	NA
RCC_T5--6	chr15:68126058	A	C	46	0.174	38	60.105	11.420	8	37.125	4.883	38	8	SKOR1	intronic	NA
RCC_T5--7	chr15:68126058	A	C	67	0.015	66	59.333	11.472	1	43.000	0.000	66	1	SKOR1	intronic	NA
RCC_T5--GL	chr15:68126058	A	NA	55	0	55	59.927	10.761	0	0	0	55	0	SKOR1	intronic	NA
RCC_T5--1	chr15:76452341	G	NA	42	0	42	58.500	10.910	0	0	0	42	0	C15orf27	intronic	NA
RCC_T5--2	chr15:76452341	G	C	37	0.027	36	56.611	11.074	1	33.000	0.000	36	1	C15orf27	intronic	NA
RCC_T5--3	chr15:76452341	G	C	40	0.175	33	60.242	8.639	7	40.857	14.182	33	7	C15orf27	intronic	NA
RCC_T5--4	chr15:76452341	G	NA	44	0	44	62.614	9.094	0	0	0	44	0	C15orf27	intronic	NA
RCC_T5--5	chr15:76452341	G	NA	51	0	50	58.780	10.566	0	0	0	50	0	C15orf27	intronic	NA
RCC_T5--6	chr15:76452341	G	C	22	0.045	21	57.810	9.469	1	33.000	0.000	21	1	C15orf27	intronic	NA
RCC_T5--7	chr15:76452341	G	NA	26	0	26	59.769	10.420	0	0	0	26	0	C15orf27	intronic	NA
RCC_T5--GL	chr15:76452341	G	NA	57	0	57	61.421	8.207	0	0	0	57	0	C15orf27	intronic	NA
RCC_T5--1	chr15:78386549	A	G	26	0.154	21	63.619	11.020	4	41.750	17.500	21	4	SH2D7	intronic	NA
RCC_T5--2	chr15:78386549	A	NA	29	0	29	63.034	8.183	0	0	0	29	0	SH2D7	intronic	NA
RCC_T5--3	chr15:78386549	A	NA	16	0	16	68.188	3.619	0	0	0	16	0	SH2D7	intronic	NA
RCC_T5--4	chr15:78386549	A	NA	28	0	28	66.929	8.454	0	0	0	28	0	SH2D7	intronic	NA
RCC_T5--5	chr15:78386549	A	NA	28	0	28	64.071	9.436	0	0	0	28	0	SH2D7	intronic	NA
RCC_T5--6	chr15:78386549	A	NA	15	0	15	65.667	5.246	0	0	0	15	0	SH2D7	intronic	NA
RCC_T5--7	chr15:78386549	A	NA	32	0	32	67.906	3.364	0	0	0	32	0	SH2D7	intronic	NA
RCC_T5--GL	chr15:78386549	A	NA	39	0	39	65.590	5.025	0	0	0	39	0	SH2D7	intronic	NA
RCC_T5--1	chr15:81636503	C	NA	24	0	24	68.083	3.078	0	0	0	24	0	TMC3	intronic	NA
RCC_T5--2	chr15:81636503	C	NA	17	0	17	66.824	6.673	0	0	0	17	0	TMC3	intronic	NA
RCC_T5--3	chr15:81636503	C	NA	21	0	21	67.714	4.787	0	0	0	21	0	TMC3	intronic	NA
RCC_T5--4	chr15:81636503	C	A	32	0.125	28	68.143	3.798	4	68.500	1.732	28	4	TMC3	intronic	NA
RCC_T5--5	chr15:81636503	C	NA	28	0	28	66.143	8.082	0	0	0	28	0	TMC3	intronic	NA
RCC_T5--6	chr15:81636503	C	NA	18	0	18	68.889	3.160	0	0	0	18	0	TMC3	intronic	NA
RCC_T5--7	chr15:81636503	C	NA	16	0	16	69.312	2.626	0	0	0	16	0	TMC3	intronic	NA
RCC_T5--GL	chr15:81636503	C	NA	33	0	33	64.939	9.852	0	0	0	33	0	TMC3	intronic	NA
RCC_T5--1	chr15:83495618	A	NA	29	0	29	60.931	7.101	0	0	0	29	0	WHAMM	intronic	NA
RCC_T5--2	chr15:83495618	A	C	17	0.059	16	62.750	9.088	1	39.000	0.000	16	1	WHAMM	intronic	NA
RCC_T5--3	chr15:83495618	A	NA	21	0	21	59.714	8.673	0	0	0	21	0	WHAMM	intronic	NA
RCC_T5--4	chr15:83495618	A	C	22	0.045	21	63.571	5.105	1	39.000	0.000	21	1	WHAMM	intronic	NA
RCC_T5--5	chr15:83495618	A	NA	21	0	21	61.667	6.374	0	0	0	21	0	WHAMM	intronic	NA
RCC_T5--6	chr15:83495618	A	C	20	0.200	16	59.125	7.311	4	39.750	1.500	16	4	WHAMM	intronic	NA
RCC_T5--7	chr15:83495618	A	NA	17	0	17	60.882	9.280	0	0	0	17	0	WHAMM	intronic	NA
RCC_T5--GL	chr15:83495618	A	NA	37	0	37	61.135	7.020	0	0	0	37	0	WHAMM	intronic	NA
RCC_T5--1	chr15:89392639	T	G	46	0.065	43	51.419	11.955	3	33.000	0.000	43	3	ACAN	intronic	NA
RCC_T5--2	chr15:89392639	T	G	34	0.029	33	50.788	11.986	1	36.000	0.000	33	1	ACAN	intronic	NA
RCC_T5--3	chr15:89392639	T	G	36	0.083	33	50.303	9.465	3	35.333	2.082	33	3	ACAN	intronic	NA
RCC_T5--4	chr15:89392639	T	NA	33	0	33	50.212	7.917	0	0	0	33	0	ACAN	intronic	NA
RCC_T5--5	chr15:89392639	T	G	25	0.040	24	55.333	9.149	1	36.000	0.000	24	1	ACAN	intronic	NA
RCC_T5--6	chr15:89392639	T	G	32	0.219	25	53.000	8.588	7	36.571	3.047	25	7	ACAN	intronic	NA
RCC_T5--7	chr15:89392639	T	G	45	0.044	42	53.452	11.635	2	36.000	0.000	42	2	ACAN	intronic	NA
RCC_T5--GL	chr15:89392639	T	NA	47	0	46	54.283	8.988	0	0	0	46	0	ACAN	intronic	NA
RCC_T5--1	chr15:89867189	A	NA	30	0	30	62.100	8.314	0	0	0	30	0	POLG	intronic	NA
RCC_T5--2	chr15:89867189	A	C	24	0.125	21	63.381	9.785	3	39.333	6.506	21	3	POLG	intronic	NA
RCC_T5--3	chr15:89867189	A	C	20	0.200	16	61.500	10.733	4	39.000	5.354	16	4	POLG	intronic	NA
RCC_T5--4	chr15:89867189	A	NA	38	0	38	61.921	7.841	0	0	0	38	0	POLG	intronic	NA
RCC_T5--5	chr15:89867189	A	NA	26	0	25	62.760	8.819	0	0	0	25	0	POLG	intronic	NA
RCC_T5--6	chr15:89867189	A	C	27	0.074	23	58.913	9.972	2	42.500	6.364	23	2	POLG	intronic	NA
RCC_T5--7	chr15:89867189	A	NA	20	0	20	64.250	6.290	0	0	0	20	0	POLG	intronic	NA
RCC_T5--GL	chr15:89867189	A	NA	38	0	38	60.500	10.237	0	0	0	38	0	POLG	intronic	NA
RCC_T5--1	chr15:90631807	A	C	39	0.026	38	56.000	10.957	1	33.000	0.000	38	1	IDH2	intronic	NA
RCC_T5--2	chr15:90631807	A	C	31	0.032	28	62.536	5.960	1	33.000	0.000	28	1	IDH2	intronic	NA
RCC_T5--3	chr15:90631807	A	C	26	0.154	22	55.682	11.445	4	36.250	2.217	22	4	IDH2	intronic	NA
RCC_T5--4	chr15:90631807	A	C	38	0.026	37	60.000	9.162	1	37.000	0.000	37	1	IDH2	intronic	NA
RCC_T5--5	chr15:90631807	A	C	52	0.038	49	57.306	11.576	2	44.000	1.414	49	2	IDH2	intronic	NA
RCC_T5--6	chr15:90631807	A	C	43	0.047	41	59.317	10.582	2	36.500	0.707	41	2	IDH2	intronic	NA
RCC_T5--7	chr15:90631807	A	C	35	0.029	33	60.879	10.043	1	37.000	0.000	33	1	IDH2	intronic	NA
RCC_T5--GL	chr15:90631807	A	NA	52	0	52	58.712	10.630	0	0	0	52	0	IDH2	intronic	NA
RCC_T5--1	chr15:91454388	C	NA	31	0	31	65.452	5.278	0	0	0	31	0	MAN2A2	intronic	NA
RCC_T5--2	chr15:91454388	C	NA	30	0	30	64.733	6.943	0	0	0	30	0	MAN2A2	intronic	NA
RCC_T5--3	chr15:91454388	C	NA	22	0	22	64.409	5.981	0	0	0	22	0	MAN2A2	intronic	NA
RCC_T5--4	chr15:91454388	C	A	37	0.108	33	66.758	4.493	4	65.000	1.155	33	4	MAN2A2	intronic	NA
RCC_T5--5	chr15:91454388	C	NA	26	0	26	64.269	8.743	0	0	0	26	0	MAN2A2	intronic	NA
RCC_T5--6	chr15:91454388	C	NA	30	0	30	63.500	8.063	0	0	0	30	0	MAN2A2	intronic	NA
RCC_T5--7	chr15:91454388	C	NA	33	0	33	65.758	3.354	0	0	0	33	0	MAN2A2	intronic	NA
RCC_T5--GL	chr15:91454388	C	NA	33	0	33	65.485	6.657	0	0	0	33	0	MAN2A2	intronic	NA
RCC_T5--1	chr15:91493765	G	T	32	0.062	30	65.533	3.812	2	33.000	0.000	30	2	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--2	chr15:91493765	G	NA	29	0	29	66.103	4.161	0	0	0	29	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--3	chr15:91493765	G	NA	35	0	35	63.600	8.708	0	0	0	35	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--4	chr15:91493765	G	T	14	0.286	10	65.400	6.257	4	64.750	2.630	10	4	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--5	chr15:91493765	G	NA	29	0	29	66.172	6.666	0	0	0	29	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--6	chr15:91493765	G	NA	26	0	26	64.038	8.511	0	0	0	26	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--7	chr15:91493765	G	NA	34	0	34	65.382	7.916	0	0	0	34	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--GL	chr15:91493765	G	NA	36	0	36	64.194	8.568	0	0	0	36	0	UNC45A	exonic	nonsynonymous_SNV
RCC_T5--1	chr15:91550870	C	NA	24	0	24	66.125	5.127	0	0	0	24	0	VPS33B	intronic	NA
RCC_T5--2	chr15:91550870	C	NA	27	0	27	67.000	4.682	0	0	0	27	0	VPS33B	intronic	NA
RCC_T5--3	chr15:91550870	C	NA	22	0	21	66.619	5.074	0	0	0	21	0	VPS33B	intronic	NA
RCC_T5--4	chr15:91550870	C	A	29	0.138	25	67.520	5.832	4	66.000	1.414	25	4	VPS33B	intronic	NA
RCC_T5--5	chr15:91550870	C	NA	16	0	16	66.438	4.647	0	0	0	16	0	VPS33B	intronic	NA
RCC_T5--6	chr15:91550870	C	NA	10	0	10	63.800	9.636	0	0	0	10	0	VPS33B	intronic	NA
RCC_T5--7	chr15:91550870	C	NA	21	0	21	67.952	4.006	0	0	0	21	0	VPS33B	intronic	NA
RCC_T5--GL	chr15:91550870	C	NA	59	0	59	64.797	7.777	0	0	0	59	0	VPS33B	intronic	NA
RCC_T5--1	chr15:97301776	C	NA	103	0	102	64.843	8.159	0	0	0	102	0	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--2	chr15:97301776	C	T	101	0.040	97	67.722	4.327	4	69.250	4.272	97	4	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--3	chr15:97301776	C	T	117	0.120	103	65.864	6.751	14	63.857	10.159	103	14	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--4	chr15:97301776	C	T	123	0.122	108	67.056	5.518	15	66.467	5.181	108	15	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--5	chr15:97301776	C	T	111	0.009	110	67.064	5.633	1	33.000	0.000	110	1	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--6	chr15:97301776	C	NA	136	0	136	66.456	7.642	0	0	0	136	0	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--7	chr15:97301776	C	T	91	0.286	65	66.815	5.668	26	66.269	5.647	65	26	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--GL	chr15:97301776	C	NA	130	0	130	66.831	6.749	0	0	0	130	0	NR2F2(dist=418284),SPATA8-AS1(dist=13459)	intergenic	NA
RCC_T5--1	chr16:11001469	C	NA	51	0	51	63.118	7.602	0	0	0	51	0	CIITA	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:11001469	C	T	53	0.019	52	63.173	9.044	1	54.000	0.000	52	1	CIITA	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:11001469	C	T	34	0.029	33	64.000	6.250	1	54.000	0.000	33	1	CIITA	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:11001469	C	T	41	0.122	36	66.167	6.860	5	66.600	3.286	36	5	CIITA	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:11001469	C	NA	50	0	50	63.520	7.083	0	0	0	50	0	CIITA	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:11001469	C	NA	49	0	49	64.857	6.079	0	0	0	49	0	CIITA	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:11001469	C	NA	55	0	55	65.764	4.426	0	0	0	55	0	CIITA	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:11001469	C	NA	55	0	55	63.982	7.903	0	0	0	55	0	CIITA	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:1129296	A	C	31	0.065	29	52.310	13.988	2	33.000	0.000	29	2	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:1129296	A	C	14	0.143	12	56.333	10.254	2	33.000	0.000	12	2	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:1129296	A	C	35	0.171	29	52.862	11.861	6	38.333	8.335	29	6	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:1129296	A	C	28	0.036	26	58.808	12.339	1	33.000	0.000	26	1	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:1129296	A	NA	19	0	19	61.263	9.380	0	0	0	19	0	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:1129296	A	C	25	0.240	19	56.895	12.688	6	35.667	1.366	19	6	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:1129296	A	NA	18	0	18	55.667	12.088	0	0	0	18	0	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:1129296	A	NA	37	0	37	58.216	11.700	0	0	0	37	0	SSTR5	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:19184754	T	G	21	0.190	17	60.059	7.782	4	38.000	1.155	17	4	SYT17	exonic	synonymous_SNV
RCC_T5--2	chr16:19184754	T	NA	31	0	31	61.774	7.843	0	0	0	31	0	SYT17	exonic	synonymous_SNV
RCC_T5--3	chr16:19184754	T	G	34	0.029	33	59.394	7.697	1	37.000	0.000	33	1	SYT17	exonic	synonymous_SNV
RCC_T5--4	chr16:19184754	T	G	37	0.027	36	59.972	8.594	1	45.000	0.000	36	1	SYT17	exonic	synonymous_SNV
RCC_T5--5	chr16:19184754	T	G	19	0.105	17	59.588	9.507	2	37.000	0.000	17	2	SYT17	exonic	synonymous_SNV
RCC_T5--6	chr16:19184754	T	G	33	0.061	31	59.065	10.838	2	41.000	5.657	31	2	SYT17	exonic	synonymous_SNV
RCC_T5--7	chr16:19184754	T	G	29	0.103	26	61.269	7.136	3	37.667	1.155	26	3	SYT17	exonic	synonymous_SNV
RCC_T5--GL	chr16:19184754	T	NA	39	0	39	59.333	9.056	0	0	0	39	0	SYT17	exonic	synonymous_SNV
RCC_T5--1	chr16:21051087	C	G	32	0.156	27	69.037	2.752	5	65.400	9.529	27	5	DNAH3	intronic	NA
RCC_T5--2	chr16:21051087	C	G	39	0.128	34	68.441	3.727	5	67.400	3.578	34	5	DNAH3	intronic	NA
RCC_T5--3	chr16:21051087	C	G	41	0.098	37	67.189	6.936	4	70.000	1.633	37	4	DNAH3	intronic	NA
RCC_T5--4	chr16:21051087	C	G	46	0.152	39	67.974	6.683	7	67.000	4.690	39	7	DNAH3	intronic	NA
RCC_T5--5	chr16:21051087	C	G	40	0.225	31	68.097	4.308	9	69.222	3.420	31	9	DNAH3	intronic	NA
RCC_T5--6	chr16:21051087	C	G	35	0.114	31	68.710	3.447	4	68.750	3.202	31	4	DNAH3	intronic	NA
RCC_T5--7	chr16:21051087	C	G	44	0.386	27	66.852	8.809	17	67.941	5.673	27	17	DNAH3	intronic	NA
RCC_T5--GL	chr16:21051087	C	NA	77	0	77	68.948	3.856	0	0	0	77	0	DNAH3	intronic	NA
RCC_T5--1	chr16:27230403	A	NA	36	0	36	66.833	4.966	0	0	0	36	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:27230403	A	NA	31	0	31	65.742	9.525	0	0	0	31	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:27230403	A	NA	21	0	21	65.905	10.540	0	0	0	21	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:27230403	A	G	35	0.114	31	67.032	6.902	4	71.250	0.957	31	4	KDM8	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:27230403	A	NA	29	0	29	66.586	5.748	0	0	0	29	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:27230403	A	NA	32	0	32	65.969	7.381	0	0	0	32	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:27230403	A	NA	34	0	34	68.176	2.907	0	0	0	34	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:27230403	A	NA	41	0	41	66.415	7.839	0	0	0	41	0	KDM8	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:28145233	A	NA	40	0	38	58.368	11.563	0	0	0	38	0	XPO6	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:28145233	A	C	35	0.029	34	58.412	11.327	1	37.000	0.000	34	1	XPO6	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:28145233	A	C	37	0.027	36	57.194	12.118	1	33.000	0.000	36	1	XPO6	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:28145233	A	C	38	0.053	36	59.694	10.127	2	37.000	0.000	36	2	XPO6	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:28145233	A	C	32	0.156	27	54.556	10.721	5	34.600	2.191	27	5	XPO6	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:28145233	A	C	35	0.171	29	61.483	8.153	6	37.167	0.983	29	6	XPO6	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:28145233	A	C	37	0.027	35	58.314	9.649	1	33.000	0.000	35	1	XPO6	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:28145233	A	NA	49	0	49	58.959	10.017	0	0	0	49	0	XPO6	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:30532769	T	NA	32	0	31	57.065	10.269	0	0	0	31	0	ITGAL	intronic	NA
RCC_T5--2	chr16:30532769	T	G	38	0.053	36	59.694	10.071	2	41.000	11.314	36	2	ITGAL	intronic	NA
RCC_T5--3	chr16:30532769	T	G	18	0.056	17	59.118	12.404	1	42.000	0.000	17	1	ITGAL	intronic	NA
RCC_T5--4	chr16:30532769	T	G	39	0.051	37	61.054	9.758	2	38.000	0.000	37	2	ITGAL	intronic	NA
RCC_T5--5	chr16:30532769	T	G	46	0.043	43	57.814	11.508	2	38.500	0.707	43	2	ITGAL	intronic	NA
RCC_T5--6	chr16:30532769	T	G	27	0.074	25	61.560	7.757	2	45.000	16.971	25	2	ITGAL	intronic	NA
RCC_T5--7	chr16:30532769	T	G	27	0.148	23	61.913	9.639	4	38.750	1.500	23	4	ITGAL	intronic	NA
RCC_T5--GL	chr16:30532769	T	NA	50	0	50	58.920	12.192	0	0	0	50	0	ITGAL	intronic	NA
RCC_T5--1	chr16:30934134	C	NA	25	0	25	64.680	6.650	0	0	0	25	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--2	chr16:30934134	C	NA	17	0	17	66.941	4.867	0	0	0	17	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--3	chr16:30934134	C	NA	19	0	19	62.895	9.865	0	0	0	19	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--4	chr16:30934134	C	NA	20	0	20	63.700	9.234	0	0	0	20	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--5	chr16:30934134	C	NA	17	0	17	63.529	9.586	0	0	0	17	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--6	chr16:30934134	C	NA	14	0	14	66.714	6.305	0	0	0	14	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--7	chr16:30934134	C	T	19	0.211	15	66.733	4.511	4	62.250	4.500	15	4	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--GL	chr16:30934134	C	NA	37	0	37	64.027	9.987	0	0	0	37	0	FBXL19-AS1	ncRNA_exonic	NA
RCC_T5--1	chr16:31382634	A	NA	16	0	16	63.062	6.266	0	0	0	16	0	ITGAX	intronic	NA
RCC_T5--2	chr16:31382634	A	NA	30	0	30	62.967	9.264	0	0	0	30	0	ITGAX	intronic	NA
RCC_T5--3	chr16:31382634	A	NA	18	0	18	65.167	4.287	0	0	0	18	0	ITGAX	intronic	NA
RCC_T5--4	chr16:31382634	A	NA	21	0	21	65.238	8.246	0	0	0	21	0	ITGAX	intronic	NA
RCC_T5--5	chr16:31382634	A	NA	17	0	17	63.353	8.817	0	0	0	17	0	ITGAX	intronic	NA
RCC_T5--6	chr16:31382634	A	NA	18	0	18	63.500	9.996	0	0	0	18	0	ITGAX	intronic	NA
RCC_T5--7	chr16:31382634	A	C	11	0.273	8	65.500	4.567	3	53.000	17.321	8	3	ITGAX	intronic	NA
RCC_T5--GL	chr16:31382634	A	NA	37	0	37	66.676	7.472	0	0	0	37	0	ITGAX	intronic	NA
RCC_T5--1	chr16:31382636	C	NA	16	0	16	65.688	2.938	0	0	0	16	0	ITGAX	intronic	NA
RCC_T5--2	chr16:31382636	C	NA	28	0	28	63.893	8.526	0	0	0	28	0	ITGAX	intronic	NA
RCC_T5--3	chr16:31382636	C	NA	18	0	18	64.500	6.428	0	0	0	18	0	ITGAX	intronic	NA
RCC_T5--4	chr16:31382636	C	NA	19	0	19	64.526	9.312	0	0	0	19	0	ITGAX	intronic	NA
RCC_T5--5	chr16:31382636	C	NA	16	0	16	64.500	9.940	0	0	0	16	0	ITGAX	intronic	NA
RCC_T5--6	chr16:31382636	C	NA	18	0	18	64.333	9.036	0	0	0	18	0	ITGAX	intronic	NA
RCC_T5--7	chr16:31382636	C	A	10	0.300	7	61.286	12.932	3	52.667	17.039	7	3	ITGAX	intronic	NA
RCC_T5--GL	chr16:31382636	C	NA	35	0	35	67.343	6.712	0	0	0	35	0	ITGAX	intronic	NA
RCC_T5--1	chr16:31499558	A	C	46	0.152	38	51.237	10.901	7	36.571	5.682	38	7	SLC5A2	intronic	NA
RCC_T5--2	chr16:31499558	A	NA	38	0	38	54.053	10.870	0	0	0	38	0	SLC5A2	intronic	NA
RCC_T5--3	chr16:31499558	A	C	44	0.136	37	50.784	11.738	6	37.833	5.419	37	6	SLC5A2	intronic	NA
RCC_T5--4	chr16:31499558	A	NA	37	0	36	56.722	8.962	0	0	0	36	0	SLC5A2	intronic	NA
RCC_T5--5	chr16:31499558	A	C	54	0.037	48	54.583	9.248	2	34.500	2.121	48	2	SLC5A2	intronic	NA
RCC_T5--6	chr16:31499558	A	C	33	0.182	27	54.370	9.536	6	35.500	2.950	27	6	SLC5A2	intronic	NA
RCC_T5--7	chr16:31499558	A	C	40	0.050	35	54.429	10.823	2	43.000	5.657	35	2	SLC5A2	intronic	NA
RCC_T5--GL	chr16:31499558	A	NA	42	0	42	57.762	9.533	0	0	0	42	0	SLC5A2	intronic	NA
RCC_T5--1	chr16:321511	A	C	53	0.189	42	59.500	11.013	10	37.900	8.386	42	10	RGS11	intronic	NA
RCC_T5--2	chr16:321511	A	C	43	0.070	39	55.487	13.260	3	34.333	2.309	39	3	RGS11	intronic	NA
RCC_T5--3	chr16:321511	A	C	37	0.054	35	58.229	12.905	2	33.000	0.000	35	2	RGS11	intronic	NA
RCC_T5--4	chr16:321511	A	C	50	0.040	48	60.208	10.983	2	38.000	7.071	48	2	RGS11	intronic	NA
RCC_T5--5	chr16:321511	A	C	51	0.039	47	62.085	9.993	2	37.500	0.707	47	2	RGS11	intronic	NA
RCC_T5--6	chr16:321511	A	C	39	0.026	36	60.833	9.605	1	37.000	0.000	36	1	RGS11	intronic	NA
RCC_T5--7	chr16:321511	A	NA	57	0	56	60.750	9.915	0	0	0	56	0	RGS11	intronic	NA
RCC_T5--GL	chr16:321511	A	NA	46	0	46	61.435	8.307	0	0	0	46	0	RGS11	intronic	NA
RCC_T5--1	chr16:601673	A	NA	33	0	33	57.152	11.214	0	0	0	33	0	CAPN15	intronic	NA
RCC_T5--2	chr16:601673	A	C	17	0.059	16	56.625	11.988	1	33.000	0.000	16	1	CAPN15	intronic	NA
RCC_T5--3	chr16:601673	A	C	17	0.235	13	59.846	8.543	4	33.750	1.500	13	4	CAPN15	intronic	NA
RCC_T5--4	chr16:601673	A	C	46	0.065	43	59.023	11.285	3	35.000	1.732	43	3	CAPN15	intronic	NA
RCC_T5--5	chr16:601673	A	C	38	0.026	36	58.278	12.390	1	33.000	0.000	36	1	CAPN15	intronic	NA
RCC_T5--6	chr16:601673	A	NA	23	0	23	60.957	9.383	0	0	0	23	0	CAPN15	intronic	NA
RCC_T5--7	chr16:601673	A	C	30	0.033	29	59.448	10.521	1	33.000	0.000	29	1	CAPN15	intronic	NA
RCC_T5--GL	chr16:601673	A	NA	34	0	34	63.059	8.198	0	0	0	34	0	CAPN15	intronic	NA
RCC_T5--1	chr16:66762143	T	G	43	0.047	41	62.146	9.457	2	35.000	2.828	41	2	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--2	chr16:66762143	T	G	43	0.163	36	63.000	11.866	7	34.143	1.952	36	7	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--3	chr16:66762143	T	G	31	0.129	25	63.960	9.770	4	34.000	2.000	25	4	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--4	chr16:66762143	T	G	50	0.160	42	61.190	12.757	8	36.000	1.852	42	8	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--5	chr16:66762143	T	G	41	0.146	34	58.353	14.564	6	35.667	2.944	34	6	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--6	chr16:66762143	T	G	29	0.172	24	60.667	12.788	5	36.400	5.639	24	5	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--7	chr16:66762143	T	G	48	0.188	37	60.703	13.205	9	34.333	2.000	37	9	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--GL	chr16:66762143	T	NA	37	0	37	61.270	12.653	0	0	0	37	0	DYNC1LI2	exonic	synonymous_SNV
RCC_T5--1	chr16:67694058	T	G	32	0.188	26	61.462	6.414	6	34.833	2.041	26	6	ACD	exonic	synonymous_SNV
RCC_T5--2	chr16:67694058	T	G	39	0.154	33	57.576	12.334	6	37.500	4.550	33	6	ACD	exonic	synonymous_SNV
RCC_T5--3	chr16:67694058	T	G	34	0.118	30	56.000	13.506	4	39.250	8.016	30	4	ACD	exonic	synonymous_SNV
RCC_T5--4	chr16:67694058	T	G	39	0.103	34	61.647	8.655	4	37.250	4.193	34	4	ACD	exonic	synonymous_SNV
RCC_T5--5	chr16:67694058	T	G	37	0.027	35	56.886	11.578	1	36.000	0.000	35	1	ACD	exonic	synonymous_SNV
RCC_T5--6	chr16:67694058	T	G	31	0.097	27	56.148	11.973	3	34.667	2.887	27	3	ACD	exonic	synonymous_SNV
RCC_T5--7	chr16:67694058	T	G	24	0.042	23	51.913	12.420	1	38.000	0.000	23	1	ACD	exonic	synonymous_SNV
RCC_T5--GL	chr16:67694058	T	NA	38	0	38	57.421	11.719	0	0	0	38	0	ACD	exonic	synonymous_SNV
RCC_T5--1	chr16:67899046	C	A	46	0.043	44	57.818	10.068	2	39.500	2.121	44	2	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:67899046	C	A	44	0.023	43	57.442	11.147	1	51.000	0.000	43	1	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:67899046	C	A	33	0.152	28	59.250	9.921	5	51.000	7.483	28	5	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:67899046	C	NA	48	0	47	59.128	8.586	0	0	0	47	0	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:67899046	C	A	33	0.061	31	59.258	10.139	2	40.000	1.414	31	2	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:67899046	C	NA	46	0	46	56.087	11.869	0	0	0	46	0	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:67899046	C	NA	51	0	51	59.333	9.452	0	0	0	51	0	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:67899046	C	NA	55	0	54	62.296	10.028	0	0	0	54	0	NUTF2	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:68380000	T	NA	39	0	39	64.282	7.786	0	0	0	39	0	PRMT7	intronic	NA
RCC_T5--2	chr16:68380000	T	NA	33	0	33	66.091	6.616	0	0	0	33	0	PRMT7	intronic	NA
RCC_T5--3	chr16:68380000	T	NA	36	0	36	65.194	8.773	0	0	0	36	0	PRMT7	intronic	NA
RCC_T5--4	chr16:68380000	T	C	31	0.129	27	67.630	3.712	4	63.000	11.605	27	4	PRMT7	intronic	NA
RCC_T5--5	chr16:68380000	T	NA	50	0	50	64.520	7.836	0	0	0	50	0	PRMT7	intronic	NA
RCC_T5--6	chr16:68380000	T	NA	29	0	29	66.862	4.860	0	0	0	29	0	PRMT7	intronic	NA
RCC_T5--7	chr16:68380000	T	NA	33	0	33	67.333	4.005	0	0	0	33	0	PRMT7	intronic	NA
RCC_T5--GL	chr16:68380000	T	NA	53	0	53	65.906	6.347	0	0	0	53	0	PRMT7	intronic	NA
RCC_T5--1	chr16:69791097	G	NA	36	0	36	65.028	7.588	0	0	0	36	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--2	chr16:69791097	G	NA	33	0	33	64.424	7.838	0	0	0	33	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--3	chr16:69791097	G	NA	29	0	29	62.931	8.506	0	0	0	29	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--4	chr16:69791097	G	A	24	0.167	20	68.200	3.222	4	68.000	1.633	20	4	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--5	chr16:69791097	G	NA	31	0	31	65.903	5.140	0	0	0	31	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--6	chr16:69791097	G	NA	26	0	26	66.077	5.145	0	0	0	26	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--7	chr16:69791097	G	NA	25	0	25	66.120	7.485	0	0	0	25	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--GL	chr16:69791097	G	NA	49	0	49	67.429	5.017	0	0	0	49	0	NOB1(dist=2226),WWP2(dist=5090)	intergenic	NA
RCC_T5--1	chr16:70532069	T	A	23	0.043	22	65.955	8.203	1	33.000	0.000	22	1	COG4	intronic	NA
RCC_T5--2	chr16:70532069	T	NA	18	0	18	68.778	4.453	0	0	0	18	0	COG4	intronic	NA
RCC_T5--3	chr16:70532069	T	NA	22	0	22	68.455	3.900	0	0	0	22	0	COG4	intronic	NA
RCC_T5--4	chr16:70532069	T	NA	17	0	17	67.471	7.954	0	0	0	17	0	COG4	intronic	NA
RCC_T5--5	chr16:70532069	T	NA	16	0	16	68.562	3.759	0	0	0	16	0	COG4	intronic	NA
RCC_T5--6	chr16:70532069	T	A	11	0.182	9	68.333	3.674	2	59.000	4.243	9	2	COG4	intronic	NA
RCC_T5--7	chr16:70532069	T	NA	12	0	12	69.083	2.314	0	0	0	12	0	COG4	intronic	NA
RCC_T5--GL	chr16:70532069	T	NA	38	0	38	67.789	4.160	0	0	0	38	0	COG4	intronic	NA
RCC_T5--1	chr16:71698076	A	C	34	0.147	28	55.357	10.137	5	34.000	2.236	28	5	PHLPP2	intronic	NA
RCC_T5--2	chr16:71698076	A	NA	18	0	18	58.278	10.851	0	0	0	18	0	PHLPP2	intronic	NA
RCC_T5--3	chr16:71698076	A	C	21	0.048	20	57.500	9.844	1	38.000	0.000	20	1	PHLPP2	intronic	NA
RCC_T5--4	chr16:71698076	A	C	21	0.190	17	59.294	9.333	4	34.500	3.000	17	4	PHLPP2	intronic	NA
RCC_T5--5	chr16:71698076	A	C	22	0.091	19	54.000	11.823	2	33.000	0.000	19	2	PHLPP2	intronic	NA
RCC_T5--6	chr16:71698076	A	C	26	0.192	21	61.333	7.310	5	35.600	2.510	21	5	PHLPP2	intronic	NA
RCC_T5--7	chr16:71698076	A	C	23	0.261	17	59.471	8.818	6	35.167	3.488	17	6	PHLPP2	intronic	NA
RCC_T5--GL	chr16:71698076	A	NA	46	0	45	58.689	8.557	0	0	0	45	0	PHLPP2	intronic	NA
RCC_T5--1	chr16:722949	A	C	42	0.143	36	59.889	11.858	6	35.667	3.882	36	6	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--2	chr16:722949	A	C	43	0.163	36	58.694	13.973	7	35.714	3.546	36	7	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--3	chr16:722949	A	C	34	0.059	31	57.516	12.622	2	39.500	4.950	31	2	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--4	chr16:722949	A	C	46	0.043	44	60.477	10.308	2	36.000	0.000	44	2	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--5	chr16:722949	A	C	41	0.024	40	54.625	13.845	1	36.000	0.000	40	1	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--6	chr16:722949	A	C	37	0.054	35	60.400	10.262	2	38.000	7.071	35	2	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--7	chr16:722949	A	C	44	0.023	43	60.349	10.052	1	43.000	0.000	43	1	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr16:722949	A	NA	58	0	58	58.862	10.755	0	0	0	58	0	RHOT2	exonic	nonsynonymous_SNV
RCC_T5--1	chr16:781020	T	G	35	0.029	34	59.588	12.821	1	33.000	0.000	34	1	NARFL	intronic	NA
RCC_T5--2	chr16:781020	T	G	35	0.029	34	60.118	13.497	1	49.000	0.000	34	1	NARFL	intronic	NA
RCC_T5--3	chr16:781020	T	G	28	0.143	23	63.130	10.266	4	33.000	0.000	23	4	NARFL	intronic	NA
RCC_T5--4	chr16:781020	T	G	57	0.018	56	62.357	12.482	1	33.000	0.000	56	1	NARFL	intronic	NA
RCC_T5--5	chr16:781020	T	G	46	0.043	43	63.326	10.006	2	33.000	0.000	43	2	NARFL	intronic	NA
RCC_T5--6	chr16:781020	T	G	62	0.194	49	63.714	10.198	12	34.333	2.964	49	12	NARFL	intronic	NA
RCC_T5--7	chr16:781020	T	G	37	0.027	36	64.389	11.382	1	46.000	0.000	36	1	NARFL	intronic	NA
RCC_T5--GL	chr16:781020	T	NA	43	0	43	63.860	9.224	0	0	0	43	0	NARFL	intronic	NA
RCC_T5--1	chr1:6894566	T	G	12	0.250	9	67.667	3.775	3	38.000	6.245	9	3	CAMTA1	intronic	NA
RCC_T5--2	chr1:6894566	T	NA	29	0	29	64.586	8.335	0	0	0	29	0	CAMTA1	intronic	NA
RCC_T5--3	chr1:6894566	T	NA	27	0	27	67.148	6.365	0	0	0	27	0	CAMTA1	intronic	NA
RCC_T5--4	chr1:6894566	T	NA	17	0	17	65.235	6.088	0	0	0	17	0	CAMTA1	intronic	NA
RCC_T5--5	chr1:6894566	T	NA	24	0	24	61.875	12.048	0	0	0	24	0	CAMTA1	intronic	NA
RCC_T5--6	chr1:6894566	T	NA	14	0	14	66.143	5.067	0	0	0	14	0	CAMTA1	intronic	NA
RCC_T5--7	chr1:6894566	T	NA	19	0	19	64.421	6.785	0	0	0	19	0	CAMTA1	intronic	NA
RCC_T5--GL	chr1:6894566	T	NA	33	0	33	65.000	9.520	0	0	0	33	0	CAMTA1	intronic	NA
RCC_T5--1	chr17:10231492	A	C	53	0.208	42	49.048	12.869	11	35.000	1.612	42	11	MYH13	intronic	NA
RCC_T5--2	chr17:10231492	A	C	36	0.111	32	49.094	11.588	4	36.000	0.000	32	4	MYH13	intronic	NA
RCC_T5--3	chr17:10231492	A	C	42	0.167	35	49.343	11.507	7	36.143	4.598	35	7	MYH13	intronic	NA
RCC_T5--4	chr17:10231492	A	C	50	0.040	48	52.521	11.881	2	38.000	7.071	48	2	MYH13	intronic	NA
RCC_T5--5	chr17:10231492	A	C	42	0.048	38	51.132	11.862	2	41.000	7.071	38	2	MYH13	intronic	NA
RCC_T5--6	chr17:10231492	A	C	38	0.105	33	51.727	12.141	4	39.750	7.500	33	4	MYH13	intronic	NA
RCC_T5--7	chr17:10231492	A	C	45	0.067	41	51.634	11.715	3	38.667	3.786	41	3	MYH13	intronic	NA
RCC_T5--GL	chr17:10231492	A	NA	83	0	83	55.542	11.889	0	0	0	83	0	MYH13	intronic	NA
RCC_T5--1	chr17:10297616	C	A	84	0.202	67	63.866	8.866	17	65.059	7.084	67	17	MYH8	exonic	stopgain_SNV
RCC_T5--2	chr17:10297616	C	A	85	0.153	72	64.958	7.133	13	67.308	5.073	72	13	MYH8	exonic	stopgain_SNV
RCC_T5--3	chr17:10297616	C	A	98	0.133	83	62.566	10.409	13	67.692	4.785	83	13	MYH8	exonic	stopgain_SNV
RCC_T5--4	chr17:10297616	C	A	88	0.159	74	66.527	5.751	14	65.429	6.847	74	14	MYH8	exonic	stopgain_SNV
RCC_T5--5	chr17:10297616	C	A	81	0.222	63	65.952	4.884	18	66.944	4.505	63	18	MYH8	exonic	stopgain_SNV
RCC_T5--6	chr17:10297616	C	A	90	0.133	78	65.115	7.133	12	68.333	2.902	78	12	MYH8	exonic	stopgain_SNV
RCC_T5--7	chr17:10297616	C	A	93	0.258	69	66.290	4.535	24	65.208	8.377	69	24	MYH8	exonic	stopgain_SNV
RCC_T5--GL	chr17:10297616	C	NA	95	0	95	65.442	8.113	0	0	0	95	0	MYH8	exonic	stopgain_SNV
RCC_T5--1	chr17:1371709	T	NA	44	0	44	63.727	10.915	0	0	0	44	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:1371709	T	NA	61	0	61	64.689	8.999	0	0	0	61	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:1371709	T	NA	34	0	34	65.765	4.164	0	0	0	34	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:1371709	T	NA	46	0	46	66.022	7.827	0	0	0	46	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:1371709	T	NA	40	0	40	66.375	8.056	0	0	0	40	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:1371709	T	NA	39	0	39	68.462	3.378	0	0	0	39	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:1371709	T	C	40	0.175	33	65.364	6.795	7	59.857	11.964	33	7	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:1371709	T	NA	56	0	56	65.143	9.913	0	0	0	56	0	MYO1C	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:1631632	G	NA	47	0	47	58.000	13.508	0	0	0	47	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:1631632	G	NA	58	0	58	63.655	7.931	0	0	0	58	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:1631632	G	NA	50	0	50	63.880	8.463	0	0	0	50	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:1631632	G	NA	50	0	50	63.880	7.400	0	0	0	50	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:1631632	G	NA	51	0	51	62.000	8.711	0	0	0	51	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:1631632	G	NA	48	0	48	61.229	10.190	0	0	0	48	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:1631632	G	A	58	0.276	42	62.429	9.961	16	65.000	2.366	42	16	WDR81	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:1631632	G	NA	72	0	72	63.014	9.866	0	0	0	72	0	WDR81	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:17029937	T	G	24	0.042	23	57.217	11.086	1	37.000	0.000	23	1	MPRIP	intronic	NA
RCC_T5--2	chr17:17029937	T	G	22	0.227	17	54.294	11.190	5	41.400	9.813	17	5	MPRIP	intronic	NA
RCC_T5--3	chr17:17029937	T	G	33	0.061	31	57.484	10.171	2	34.500	2.121	31	2	MPRIP	intronic	NA
RCC_T5--4	chr17:17029937	T	G	25	0.040	24	58.042	9.420	1	39.000	0.000	24	1	MPRIP	intronic	NA
RCC_T5--5	chr17:17029937	T	G	25	0.040	24	59.750	9.795	1	37.000	0.000	24	1	MPRIP	intronic	NA
RCC_T5--6	chr17:17029937	T	G	34	0.059	31	59.097	8.580	2	36.500	0.707	31	2	MPRIP	intronic	NA
RCC_T5--7	chr17:17029937	T	NA	34	0	33	56.788	11.664	0	0	0	33	0	MPRIP	intronic	NA
RCC_T5--GL	chr17:17029937	T	NA	40	0	40	57.725	10.486	0	0	0	40	0	MPRIP	intronic	NA
RCC_T5--1	chr17:18061024	A	NA	30	0	30	60.367	12.439	0	0	0	30	0	MYO15A	intronic	NA
RCC_T5--2	chr17:18061024	A	C	42	0.214	33	63.606	10.633	9	36.222	2.906	33	9	MYO15A	intronic	NA
RCC_T5--3	chr17:18061024	A	C	36	0.028	35	57.200	13.436	1	36.000	0.000	35	1	MYO15A	intronic	NA
RCC_T5--4	chr17:18061024	A	NA	46	0	46	58.435	13.477	0	0	0	46	0	MYO15A	intronic	NA
RCC_T5--5	chr17:18061024	A	NA	43	0	43	59.047	13.230	0	0	0	43	0	MYO15A	intronic	NA
RCC_T5--6	chr17:18061024	A	C	34	0.029	33	57.758	14.038	1	36.000	0.000	33	1	MYO15A	intronic	NA
RCC_T5--7	chr17:18061024	A	C	40	0.025	39	59.897	12.165	1	36.000	0.000	39	1	MYO15A	intronic	NA
RCC_T5--GL	chr17:18061024	A	NA	38	0	38	58.211	12.637	0	0	0	38	0	MYO15A	intronic	NA
RCC_T5--1	chr17:18145887	A	NA	19	0	19	59.895	8.550	0	0	0	19	0	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:18145887	A	NA	26	0	25	59.240	9.905	0	0	0	25	0	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:18145887	A	NA	13	0	13	56.769	12.201	0	0	0	13	0	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:18145887	A	C	13	0.154	11	61.636	7.514	2	35.500	3.536	11	2	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:18145887	A	NA	25	0	25	58.760	9.837	0	0	0	25	0	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:18145887	A	C	18	0.167	15	58.800	8.419	3	46.000	7.550	15	3	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:18145887	A	C	17	0.059	16	59.562	9.143	1	39.000	0.000	16	1	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:18145887	A	NA	37	0	37	58.595	9.541	0	0	0	37	0	LLGL1	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:18155347	A	C	42	0.167	35	59.543	9.805	7	35.000	1.915	35	7	FLII	exonic	synonymous_SNV
RCC_T5--2	chr17:18155347	A	C	45	0.067	42	58.405	9.961	3	34.333	2.309	42	3	FLII	exonic	synonymous_SNV
RCC_T5--3	chr17:18155347	A	C	43	0.070	40	58.775	8.900	3	34.000	1.732	40	3	FLII	exonic	synonymous_SNV
RCC_T5--4	chr17:18155347	A	NA	64	0	64	59.812	8.817	0	0	0	64	0	FLII	exonic	synonymous_SNV
RCC_T5--5	chr17:18155347	A	C	63	0.016	60	59.567	10.471	1	36.000	0.000	60	1	FLII	exonic	synonymous_SNV
RCC_T5--6	chr17:18155347	A	C	40	0.025	39	56.718	11.657	1	37.000	0.000	39	1	FLII	exonic	synonymous_SNV
RCC_T5--7	chr17:18155347	A	C	87	0.011	85	59.824	9.651	1	43.000	0.000	85	1	FLII	exonic	synonymous_SNV
RCC_T5--GL	chr17:18155347	A	NA	78	0	78	57.449	10.266	0	0	0	78	0	FLII	exonic	synonymous_SNV
RCC_T5--1	chr17:18923734	A	C	49	0.061	44	54.636	11.658	3	42.000	8.660	44	3	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:18923734	A	C	42	0.167	34	58.382	9.400	7	38.571	4.237	34	7	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:18923734	A	C	55	0.018	52	56.538	12.068	1	46.000	0.000	52	1	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:18923734	A	C	48	0.021	47	61.191	9.322	1	37.000	0.000	47	1	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:18923734	A	C	50	0.040	46	52.457	13.316	2	33.000	0.000	46	2	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:18923734	A	C	38	0.026	36	55.306	12.689	1	39.000	0.000	36	1	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:18923734	A	C	36	0.056	34	56.324	10.510	2	38.500	0.707	34	2	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:18923734	A	NA	54	0	54	58.722	10.451	0	0	0	54	0	SLC5A10	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:19451506	C	NA	16	0	16	65.250	8.843	0	0	0	16	0	SLC47A1	intronic	NA
RCC_T5--2	chr17:19451506	C	NA	17	0	17	67.941	4.956	0	0	0	17	0	SLC47A1	intronic	NA
RCC_T5--3	chr17:19451506	C	NA	12	0	12	68.167	4.064	0	0	0	12	0	SLC47A1	intronic	NA
RCC_T5--4	chr17:19451506	C	A	11	0.182	9	65.444	3.358	2	67.000	7.071	9	2	SLC47A1	intronic	NA
RCC_T5--5	chr17:19451506	C	NA	18	0	18	67.222	4.918	0	0	0	18	0	SLC47A1	intronic	NA
RCC_T5--6	chr17:19451506	C	NA	16	0	16	66.312	5.437	0	0	0	16	0	SLC47A1	intronic	NA
RCC_T5--7	chr17:19451506	C	NA	22	0	22	65.500	8.058	0	0	0	22	0	SLC47A1	intronic	NA
RCC_T5--GL	chr17:19451506	C	NA	35	0	35	66.914	4.925	0	0	0	35	0	SLC47A1	intronic	NA
RCC_T5--1	chr17:26692224	A	G	25	0.160	21	62.857	9.655	4	60.750	3.403	21	4	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:26692224	A	NA	39	0	38	65.842	3.018	0	0	0	38	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:26692224	A	NA	28	0	28	65.071	5.900	0	0	0	28	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:26692224	A	G	33	0.030	32	66.000	3.223	1	65.000	0.000	32	1	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:26692224	A	NA	33	0	32	66.375	5.148	0	0	0	32	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:26692224	A	G	29	0.034	28	66.679	2.842	1	65.000	0.000	28	1	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:26692224	A	G	44	0.068	41	65.829	5.818	3	63.333	2.309	41	3	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:26692224	A	NA	34	0	34	66.912	3.841	0	0	0	34	0	SEBOX	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:26883792	A	C	32	0.031	31	57.871	12.455	1	33.000	0.000	31	1	PIGS	intronic	NA
RCC_T5--2	chr17:26883792	A	C	19	0.158	16	60.312	12.642	3	39.000	2.000	16	3	PIGS	intronic	NA
RCC_T5--3	chr17:26883792	A	NA	20	0	20	57.250	12.243	0	0	0	20	0	PIGS	intronic	NA
RCC_T5--4	chr17:26883792	A	C	33	0.061	31	63.226	9.014	2	34.500	2.121	31	2	PIGS	intronic	NA
RCC_T5--5	chr17:26883792	A	NA	27	0	27	57.593	13.189	0	0	0	27	0	PIGS	intronic	NA
RCC_T5--6	chr17:26883792	A	C	32	0.031	31	59.581	10.865	1	33.000	0.000	31	1	PIGS	intronic	NA
RCC_T5--7	chr17:26883792	A	NA	18	0	18	65.833	5.328	0	0	0	18	0	PIGS	intronic	NA
RCC_T5--GL	chr17:26883792	A	NA	49	0	49	65.347	7.443	0	0	0	49	0	PIGS	intronic	NA
RCC_T5--1	chr17:27869444	T	C	21	0.190	17	68.941	2.512	4	63.000	10.520	17	4	TAOK1	intronic	NA
RCC_T5--2	chr17:27869444	T	C	26	0.077	24	68.417	2.501	2	71.000	1.414	24	2	TAOK1	intronic	NA
RCC_T5--3	chr17:27869444	T	C	26	0.115	23	67.913	3.976	3	69.667	3.215	23	3	TAOK1	intronic	NA
RCC_T5--4	chr17:27869444	T	C	33	0.152	28	67.786	3.872	5	67.400	4.099	28	5	TAOK1	intronic	NA
RCC_T5--5	chr17:27869444	T	C	20	0.350	13	67.846	5.273	7	68.429	3.457	13	7	TAOK1	intronic	NA
RCC_T5--6	chr17:27869444	T	C	26	0.154	22	69.409	4.915	4	62.250	14.268	22	4	TAOK1	intronic	NA
RCC_T5--7	chr17:27869444	T	C	26	0.269	19	69.053	3.274	7	69.000	2.236	19	7	TAOK1	intronic	NA
RCC_T5--GL	chr17:27869444	T	NA	52	0	52	69.077	4.715	0	0	0	52	0	TAOK1	intronic	NA
RCC_T5--1	chr17:3663418	T	G	30	0.067	26	54.885	9.758	2	38.000	1.414	26	2	ITGAE	intronic	NA
RCC_T5--2	chr17:3663418	T	G	31	0.194	25	58.080	7.767	6	39.667	3.204	25	6	ITGAE	intronic	NA
RCC_T5--3	chr17:3663418	T	NA	27	0	27	54.519	9.617	0	0	0	27	0	ITGAE	intronic	NA
RCC_T5--4	chr17:3663418	T	NA	27	0	27	60.667	5.414	0	0	0	27	0	ITGAE	intronic	NA
RCC_T5--5	chr17:3663418	T	NA	23	0	22	56.045	9.409	0	0	0	22	0	ITGAE	intronic	NA
RCC_T5--6	chr17:3663418	T	G	29	0.034	27	55.630	9.030	1	39.000	0.000	27	1	ITGAE	intronic	NA
RCC_T5--7	chr17:3663418	T	G	18	0.056	15	57.667	8.156	1	38.000	0.000	15	1	ITGAE	intronic	NA
RCC_T5--GL	chr17:3663418	T	NA	39	0	39	58.462	7.440	0	0	0	39	0	ITGAE	intronic	NA
RCC_T5--1	chr17:37899732	A	C	38	0.184	30	50.933	12.281	7	35.143	2.268	30	7	GRB7	intronic	NA
RCC_T5--2	chr17:37899732	A	C	27	0.037	26	55.808	7.233	1	33.000	0.000	26	1	GRB7	intronic	NA
RCC_T5--3	chr17:37899732	A	C	37	0.027	36	51.750	10.856	1	33.000	0.000	36	1	GRB7	intronic	NA
RCC_T5--4	chr17:37899732	A	NA	44	0	44	55.705	8.959	0	0	0	44	0	GRB7	intronic	NA
RCC_T5--5	chr17:37899732	A	NA	31	0	31	53.581	9.157	0	0	0	31	0	GRB7	intronic	NA
RCC_T5--6	chr17:37899732	A	NA	31	0	31	53.935	9.409	0	0	0	31	0	GRB7	intronic	NA
RCC_T5--7	chr17:37899732	A	NA	31	0	30	56.767	7.578	0	0	0	30	0	GRB7	intronic	NA
RCC_T5--GL	chr17:37899732	A	NA	49	0	48	56.792	7.314	0	0	0	48	0	GRB7	intronic	NA
RCC_T5--1	chr17:40263514	A	T	22	0.091	20	61.450	8.823	2	71.000	1.414	20	2	DHX58	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:40263514	A	T	16	0.188	13	64.385	4.445	3	66.333	0.577	13	3	DHX58	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:40263514	A	T	32	0.219	24	64.792	4.452	7	65.000	4.933	24	7	DHX58	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:40263514	A	T	19	0.158	16	63.250	8.266	3	67.333	3.215	16	3	DHX58	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:40263514	A	T	33	0.273	23	60.174	9.976	9	63.333	6.708	23	9	DHX58	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:40263514	A	T	14	0.143	12	63.667	6.733	2	65.500	3.536	12	2	DHX58	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:40263514	A	T	27	0.296	18	63.167	7.180	8	68.875	2.642	18	8	DHX58	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:40263514	A	NA	35	0	35	63.714	7.323	0	0	0	35	0	DHX58	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:40266737	A	C	21	0.238	16	58.688	13.200	5	36.600	4.099	16	5	KAT2A	intronic	NA
RCC_T5--2	chr17:40266737	A	C	13	0.077	12	52.000	10.322	1	36.000	0.000	12	1	KAT2A	intronic	NA
RCC_T5--3	chr17:40266737	A	NA	13	0	13	56.385	11.878	0	0	0	13	0	KAT2A	intronic	NA
RCC_T5--4	chr17:40266737	A	C	19	0.053	18	62.556	6.827	1	38.000	0.000	18	1	KAT2A	intronic	NA
RCC_T5--5	chr17:40266737	A	C	27	0.037	25	56.880	10.674	1	37.000	0.000	25	1	KAT2A	intronic	NA
RCC_T5--6	chr17:40266737	A	NA	15	0	15	53.467	10.602	0	0	0	15	0	KAT2A	intronic	NA
RCC_T5--7	chr17:40266737	A	C	12	0.083	11	56.727	9.789	1	38.000	0.000	11	1	KAT2A	intronic	NA
RCC_T5--GL	chr17:40266737	A	NA	35	0	34	61.676	7.639	0	0	0	34	0	KAT2A	intronic	NA
RCC_T5--1	chr17:40314297	A	C	44	0.068	40	56.950	10.782	3	37.000	0.000	40	3	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:40314297	A	C	54	0.093	47	58.021	11.422	5	39.400	5.367	47	5	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:40314297	A	C	40	0.175	32	51.906	12.975	7	37.143	2.035	32	7	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:40314297	A	C	60	0.017	59	57.441	11.232	1	37.000	0.000	59	1	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:40314297	A	C	41	0.024	39	58.205	11.519	1	33.000	0.000	39	1	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:40314297	A	C	52	0.115	46	59.565	9.514	6	38.000	1.673	46	6	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:40314297	A	C	39	0.051	37	55.757	10.326	2	37.000	5.657	37	2	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:40314297	A	NA	57	0	57	60.351	9.777	0	0	0	57	0	KCNH4	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:40714518	A	C	32	0.062	29	57.621	10.675	2	34.500	2.121	29	2	COASY	UTR5	NA
RCC_T5--2	chr17:40714518	A	C	29	0.103	26	55.923	11.260	3	38.667	6.658	26	3	COASY	UTR5	NA
RCC_T5--3	chr17:40714518	A	C	21	0.048	20	58.100	9.084	1	57.000	0.000	20	1	COASY	UTR5	NA
RCC_T5--4	chr17:40714518	A	NA	30	0	30	58.500	11.153	0	0	0	30	0	COASY	UTR5	NA
RCC_T5--5	chr17:40714518	A	C	40	0.075	37	56.378	10.709	3	34.000	1.732	37	3	COASY	UTR5	NA
RCC_T5--6	chr17:40714518	A	NA	21	0	21	59.381	11.106	0	0	0	21	0	COASY	UTR5	NA
RCC_T5--7	chr17:40714518	A	C	32	0.188	26	54.231	11.061	6	38.333	5.574	26	6	COASY	UTR5	NA
RCC_T5--GL	chr17:40714518	A	NA	36	0	35	56.286	10.772	0	0	0	35	0	COASY	UTR5	NA
RCC_T5--1	chr17:42457933	A	NA	28	0	28	59.321	11.066	0	0	0	28	0	ITGA2B	intronic	NA
RCC_T5--2	chr17:42457933	A	C	35	0.057	33	60.485	12.792	2	33.000	0.000	33	2	ITGA2B	intronic	NA
RCC_T5--3	chr17:42457933	A	C	32	0.250	23	64.043	5.958	8	33.375	1.061	23	8	ITGA2B	intronic	NA
RCC_T5--4	chr17:42457933	A	NA	28	0	28	62.714	11.630	0	0	0	28	0	ITGA2B	intronic	NA
RCC_T5--5	chr17:42457933	A	C	27	0.074	24	61.375	10.291	2	33.000	0.000	24	2	ITGA2B	intronic	NA
RCC_T5--6	chr17:42457933	A	C	31	0.097	28	64.321	5.186	3	36.333	5.774	28	3	ITGA2B	intronic	NA
RCC_T5--7	chr17:42457933	A	NA	41	0	41	57.146	13.041	0	0	0	41	0	ITGA2B	intronic	NA
RCC_T5--GL	chr17:42457933	A	NA	48	0	47	62.681	9.765	0	0	0	47	0	ITGA2B	intronic	NA
RCC_T5--1	chr17:42978782	A	NA	40	0	40	66.125	5.871	0	0	0	40	0	CCDC103	intronic	NA
RCC_T5--2	chr17:42978782	A	NA	32	0	32	66.812	5.733	0	0	0	32	0	CCDC103	intronic	NA
RCC_T5--3	chr17:42978782	A	NA	47	0	47	67.511	3.706	0	0	0	47	0	CCDC103	intronic	NA
RCC_T5--4	chr17:42978782	A	NA	45	0	45	67.778	6.030	0	0	0	45	0	CCDC103	intronic	NA
RCC_T5--5	chr17:42978782	A	NA	43	0	43	66.791	4.663	0	0	0	43	0	CCDC103	intronic	NA
RCC_T5--6	chr17:42978782	A	NA	44	0	44	66.636	4.591	0	0	0	44	0	CCDC103	intronic	NA
RCC_T5--7	chr17:42978782	A	T	35	0.171	29	66.034	6.219	6	65.667	0.516	29	6	CCDC103	intronic	NA
RCC_T5--GL	chr17:42978782	A	NA	48	0	48	68.083	3.797	0	0	0	48	0	CCDC103	intronic	NA
RCC_T5--1	chr17:43196473	C	NA	25	0	25	68.440	5.009	0	0	0	25	0	PLCD3	intronic	NA
RCC_T5--2	chr17:43196473	C	NA	20	0	20	67.750	4.678	0	0	0	20	0	PLCD3	intronic	NA
RCC_T5--3	chr17:43196473	C	NA	27	0	27	66.185	9.954	0	0	0	27	0	PLCD3	intronic	NA
RCC_T5--4	chr17:43196473	C	A	34	0.118	30	68.300	4.822	4	67.250	2.872	30	4	PLCD3	intronic	NA
RCC_T5--5	chr17:43196473	C	NA	35	0	35	64.800	9.722	0	0	0	35	0	PLCD3	intronic	NA
RCC_T5--6	chr17:43196473	C	NA	20	0	20	65.950	9.400	0	0	0	20	0	PLCD3	intronic	NA
RCC_T5--7	chr17:43196473	C	NA	32	0	32	67.875	4.420	0	0	0	32	0	PLCD3	intronic	NA
RCC_T5--GL	chr17:43196473	C	NA	34	0	34	67.882	4.617	0	0	0	34	0	PLCD3	intronic	NA
RCC_T5--1	chr17:4644118	A	C	21	0.190	17	56.882	14.495	4	41.000	10.832	17	4	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:4644118	A	NA	26	0	26	59.577	9.450	0	0	0	26	0	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:4644118	A	C	24	0.125	21	54.048	11.745	3	37.000	0.000	21	3	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:4644118	A	C	24	0.042	23	62.348	11.551	1	33.000	0.000	23	1	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:4644118	A	C	15	0.133	13	57.615	12.613	2	35.000	2.828	13	2	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:4644118	A	C	15	0.067	14	62.571	13.125	1	37.000	0.000	14	1	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:4644118	A	C	23	0.087	21	63.286	9.748	2	37.000	0.000	21	2	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:4644118	A	NA	34	0	34	63.971	10.011	0	0	0	34	0	ZMYND15	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:466005	C	A	33	0.152	28	65.571	9.303	5	62.200	6.496	28	5	VPS53	intronic	NA
RCC_T5--2	chr17:466005	C	A	39	0.077	36	66.583	7.291	3	54.333	18.502	36	3	VPS53	intronic	NA
RCC_T5--3	chr17:466005	C	A	45	0.044	43	66.279	7.268	2	49.500	23.335	43	2	VPS53	intronic	NA
RCC_T5--4	chr17:466005	C	A	38	0.079	35	68.571	6.744	3	50.000	15.133	35	3	VPS53	intronic	NA
RCC_T5--5	chr17:466005	C	A	29	0.034	28	68.750	3.134	1	66.000	0.000	28	1	VPS53	intronic	NA
RCC_T5--6	chr17:466005	C	A	49	0.041	47	68.085	5.278	2	66.000	0.000	47	2	VPS53	intronic	NA
RCC_T5--7	chr17:466005	C	NA	36	0	36	66.889	6.351	0	0	0	36	0	VPS53	intronic	NA
RCC_T5--GL	chr17:466005	C	NA	60	0	60	67.350	5.399	0	0	0	60	0	VPS53	intronic	NA
RCC_T5--1	chr17:4718585	T	G	21	0.143	17	55.235	7.293	3	35.667	4.619	17	3	PLD2	intronic	NA
RCC_T5--2	chr17:4718585	T	NA	28	0	28	53.750	10.153	0	0	0	28	0	PLD2	intronic	NA
RCC_T5--3	chr17:4718585	T	NA	15	0	15	54.200	10.220	0	0	0	15	0	PLD2	intronic	NA
RCC_T5--4	chr17:4718585	T	G	28	0.036	27	53.111	6.583	1	33.000	0.000	27	1	PLD2	intronic	NA
RCC_T5--5	chr17:4718585	T	G	24	0.167	20	51.150	11.909	4	37.500	3.317	20	4	PLD2	intronic	NA
RCC_T5--6	chr17:4718585	T	NA	23	0	23	54.826	9.562	0	0	0	23	0	PLD2	intronic	NA
RCC_T5--7	chr17:4718585	T	G	10	0.100	9	53.111	11.062	1	39.000	0.000	9	1	PLD2	intronic	NA
RCC_T5--GL	chr17:4718585	T	NA	35	0	34	58.824	8.200	0	0	0	34	0	PLD2	intronic	NA
RCC_T5--1	chr17:47699335	G	NA	137	0	136	67.081	6.384	0	0	0	136	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:47699335	G	A	129	0.008	127	68.622	4.835	1	65.000	0.000	127	1	SPOP	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:47699335	G	NA	106	0	106	68.226	5.441	0	0	0	106	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:47699335	G	NA	113	0	113	69.150	4.126	0	0	0	113	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:47699335	G	NA	98	0	98	68.133	3.989	0	0	0	98	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:47699335	G	A	108	0.176	89	67.742	4.499	19	69.211	7.495	89	19	SPOP	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:47699335	G	NA	85	0	85	68.612	4.776	0	0	0	85	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:47699335	G	NA	132	0	132	68.614	5.984	0	0	0	132	0	SPOP	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:48355018	C	NA	29	0	28	64.536	5.840	0	0	0	28	0	TMEM92	intronic	NA
RCC_T5--2	chr17:48355018	C	NA	32	0	32	63.219	10.238	0	0	0	32	0	TMEM92	intronic	NA
RCC_T5--3	chr17:48355018	C	NA	38	0	38	63.237	10.320	0	0	0	38	0	TMEM92	intronic	NA
RCC_T5--4	chr17:48355018	C	A	33	0.121	29	66.586	6.327	4	67.250	4.500	29	4	TMEM92	intronic	NA
RCC_T5--5	chr17:48355018	C	NA	35	0	35	65.000	8.033	0	0	0	35	0	TMEM92	intronic	NA
RCC_T5--6	chr17:48355018	C	NA	25	0	25	63.560	9.959	0	0	0	25	0	TMEM92	intronic	NA
RCC_T5--7	chr17:48355018	C	NA	38	0	38	65.921	6.895	0	0	0	38	0	TMEM92	intronic	NA
RCC_T5--GL	chr17:48355018	C	NA	42	0	42	67.048	6.688	0	0	0	42	0	TMEM92	intronic	NA
RCC_T5--1	chr17:48822974	G	A	24	0.125	21	66.524	7.827	3	65.333	7.234	21	3	LUC7L3	intronic	NA
RCC_T5--2	chr17:48822974	G	A	29	0.138	25	68.160	3.986	4	70.500	2.380	25	4	LUC7L3	intronic	NA
RCC_T5--3	chr17:48822974	G	A	29	0.138	25	67.840	4.643	4	70.500	1.291	25	4	LUC7L3	intronic	NA
RCC_T5--4	chr17:48822974	G	A	26	0.231	20	67.400	8.798	6	69.333	1.966	20	6	LUC7L3	intronic	NA
RCC_T5--5	chr17:48822974	G	A	29	0.207	23	65.957	7.784	6	68.333	2.422	23	6	LUC7L3	intronic	NA
RCC_T5--6	chr17:48822974	G	A	31	0.032	30	67.933	3.581	1	41.000	0.000	30	1	LUC7L3	intronic	NA
RCC_T5--7	chr17:48822974	G	A	26	0.308	18	68.611	3.109	8	67.750	5.776	18	8	LUC7L3	intronic	NA
RCC_T5--GL	chr17:48822974	G	NA	43	0	43	67.884	5.909	0	0	0	43	0	LUC7L3	intronic	NA
RCC_T5--1	chr17:5338315	C	G	25	0.160	15	66.267	5.812	4	58.000	16.713	15	4	C1QBP	intronic	NA
RCC_T5--2	chr17:5338315	C	G	50	0.100	34	65.118	6.888	5	60.600	12.700	34	5	C1QBP	intronic	NA
RCC_T5--3	chr17:5338315	C	G	36	0.139	26	65.538	7.763	5	64.400	2.510	26	5	C1QBP	intronic	NA
RCC_T5--4	chr17:5338315	C	G	37	0.054	25	68.600	3.524	2	67.500	0.707	25	2	C1QBP	intronic	NA
RCC_T5--5	chr17:5338315	C	G	27	0.074	19	65.105	6.350	2	50.000	24.042	19	2	C1QBP	intronic	NA
RCC_T5--6	chr17:5338315	C	G	30	0.067	27	65.222	9.374	2	67.500	0.707	27	2	C1QBP	intronic	NA
RCC_T5--7	chr17:5338315	C	G	36	0.028	28	67.500	4.159	1	65.000	0.000	28	1	C1QBP	intronic	NA
RCC_T5--GL	chr17:5338315	C	NA	55	0	48	67.792	3.038	0	0	0	48	0	C1QBP	intronic	NA
RCC_T5--1	chr17:56350043	T	G	31	0.032	28	47.750	11.068	1	33.000	0.000	28	1	MPO	intronic	NA
RCC_T5--2	chr17:56350043	T	G	24	0.083	22	48.455	7.398	2	39.500	4.950	22	2	MPO	intronic	NA
RCC_T5--3	chr17:56350043	T	G	40	0.050	38	50.184	8.037	2	39.500	4.950	38	2	MPO	intronic	NA
RCC_T5--4	chr17:56350043	T	NA	31	0	31	51.710	7.777	0	0	0	31	0	MPO	intronic	NA
RCC_T5--5	chr17:56350043	T	NA	31	0	29	51.690	11.292	0	0	0	29	0	MPO	intronic	NA
RCC_T5--6	chr17:56350043	T	G	27	0.185	21	50.571	10.902	5	36.000	0.000	21	5	MPO	intronic	NA
RCC_T5--7	chr17:56350043	T	G	26	0.038	23	54.391	8.917	1	43.000	0.000	23	1	MPO	intronic	NA
RCC_T5--GL	chr17:56350043	T	NA	43	0	42	50.738	7.924	0	0	0	42	0	MPO	intronic	NA
RCC_T5--1	chr17:62122813	G	T	100	0.180	82	64.524	9.758	18	60.667	9.616	82	18	ERN1	exonic	synonymous_SNV
RCC_T5--2	chr17:62122813	G	T	123	0.106	110	64.755	7.766	13	61.308	11.722	110	13	ERN1	exonic	synonymous_SNV
RCC_T5--3	chr17:62122813	G	T	92	0.130	80	64.812	8.660	12	65.500	3.896	80	12	ERN1	exonic	synonymous_SNV
RCC_T5--4	chr17:62122813	G	T	104	0.144	89	66.180	6.127	15	62.333	6.842	89	15	ERN1	exonic	synonymous_SNV
RCC_T5--5	chr17:62122813	G	T	110	0.136	95	66.158	7.682	15	64.133	9.094	95	15	ERN1	exonic	synonymous_SNV
RCC_T5--6	chr17:62122813	G	T	75	0.093	68	65.676	7.799	7	64.429	5.912	68	7	ERN1	exonic	synonymous_SNV
RCC_T5--7	chr17:62122813	G	T	97	0.268	71	65.915	6.431	26	64.731	7.857	71	26	ERN1	exonic	synonymous_SNV
RCC_T5--GL	chr17:62122813	G	NA	116	0	116	65.250	9.175	0	0	0	116	0	ERN1	exonic	synonymous_SNV
RCC_T5--1	chr17:62141575	T	C	10	0.200	8	64.875	6.896	2	39.000	8.485	8	2	ERN1	intronic	NA
RCC_T5--2	chr17:62141575	T	C	16	0.125	14	50.571	13.207	2	35.000	2.828	14	2	ERN1	intronic	NA
RCC_T5--3	chr17:62141575	T	C	17	0.235	13	53.077	11.878	4	37.750	9.500	13	4	ERN1	intronic	NA
RCC_T5--4	chr17:62141575	T	C	17	0.118	15	60.133	9.486	2	36.000	4.243	15	2	ERN1	intronic	NA
RCC_T5--5	chr17:62141575	T	C	12	0.083	11	63.364	5.954	1	33.000	0.000	11	1	ERN1	intronic	NA
RCC_T5--6	chr17:62141575	T	C	16	0.125	14	56.714	10.179	2	35.000	2.828	14	2	ERN1	intronic	NA
RCC_T5--7	chr17:62141575	T	C	13	0.077	12	59.250	8.884	1	33.000	0.000	12	1	ERN1	intronic	NA
RCC_T5--GL	chr17:62141575	T	NA	33	0	33	59.030	8.323	0	0	0	33	0	ERN1	intronic	NA
RCC_T5--1	chr17:6353776	A	C	47	0.043	45	56.400	10.955	2	34.500	2.121	45	2	FAM64A	UTR3	NA
RCC_T5--2	chr17:6353776	A	C	49	0.082	45	56.689	11.223	4	35.500	1.732	45	4	FAM64A	UTR3	NA
RCC_T5--3	chr17:6353776	A	C	42	0.190	32	56.531	9.841	8	37.875	5.987	32	8	FAM64A	UTR3	NA
RCC_T5--4	chr17:6353776	A	C	36	0.056	34	61.588	6.425	2	33.000	0.000	34	2	FAM64A	UTR3	NA
RCC_T5--5	chr17:6353776	A	C	43	0.093	38	54.500	10.684	4	37.000	1.414	38	4	FAM64A	UTR3	NA
RCC_T5--6	chr17:6353776	A	C	42	0.048	40	57.300	10.196	2	41.000	5.657	40	2	FAM64A	UTR3	NA
RCC_T5--7	chr17:6353776	A	C	42	0.048	40	58.175	9.038	2	38.000	7.071	40	2	FAM64A	UTR3	NA
RCC_T5--GL	chr17:6353776	A	NA	44	0	43	59.000	10.878	0	0	0	43	0	FAM64A	UTR3	NA
RCC_T5--1	chr17:66145376	G	NA	106	0	106	65.830	6.854	0	0	0	106	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--2	chr17:66145376	G	NA	119	0	119	67.731	3.389	0	0	0	119	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--3	chr17:66145376	G	NA	114	0	113	66.363	6.009	0	0	0	113	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--4	chr17:66145376	G	NA	121	0	121	67.380	5.290	0	0	0	121	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--5	chr17:66145376	G	NA	87	0	86	66.070	6.497	0	0	0	86	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--6	chr17:66145376	G	A	109	0.174	90	66.556	6.360	19	64.368	6.986	90	19	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--7	chr17:66145376	G	NA	103	0	103	67.320	5.039	0	0	0	103	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--GL	chr17:66145376	G	NA	154	0	154	67.799	4.371	0	0	0	154	0	LINC00674(dist=13306),LOC440461(dist=49425)	intergenic	NA
RCC_T5--1	chr17:67516353	A	T	27	0.074	25	54.520	10.852	2	49.500	17.678	25	2	MAP2K6	intronic	NA
RCC_T5--2	chr17:67516353	A	T	38	0.079	34	51.471	9.928	3	35.333	2.082	34	3	MAP2K6	intronic	NA
RCC_T5--3	chr17:67516353	A	T	47	0.064	44	53.682	9.885	3	39.000	3.464	44	3	MAP2K6	intronic	NA
RCC_T5--4	chr17:67516353	A	T	36	0.111	32	58.188	7.420	4	36.500	0.577	32	4	MAP2K6	intronic	NA
RCC_T5--5	chr17:67516353	A	T	38	0.026	37	57.973	9.191	1	37.000	0.000	37	1	MAP2K6	intronic	NA
RCC_T5--6	chr17:67516353	A	T	32	0.188	26	53.885	8.874	6	43.167	6.274	26	6	MAP2K6	intronic	NA
RCC_T5--7	chr17:67516353	A	NA	39	0	39	59.436	7.040	0	0	0	39	0	MAP2K6	intronic	NA
RCC_T5--GL	chr17:67516353	A	NA	41	0	41	54.341	8.794	0	0	0	41	0	MAP2K6	intronic	NA
RCC_T5--1	chr17:7189233	T	C	25	0.160	21	52.048	8.806	4	34.500	1.732	21	4	SLC2A4	intronic	NA
RCC_T5--2	chr17:7189233	T	C	22	0.091	18	49.833	9.243	2	39.500	4.950	18	2	SLC2A4	intronic	NA
RCC_T5--3	chr17:7189233	T	C	18	0.167	15	54.133	11.594	3	42.667	8.505	15	3	SLC2A4	intronic	NA
RCC_T5--4	chr17:7189233	T	NA	19	0	19	58.316	8.744	0	0	0	19	0	SLC2A4	intronic	NA
RCC_T5--5	chr17:7189233	T	C	22	0.045	20	54.300	8.163	1	33.000	0.000	20	1	SLC2A4	intronic	NA
RCC_T5--6	chr17:7189233	T	C	20	0.250	15	48.200	8.612	5	36.200	4.087	15	5	SLC2A4	intronic	NA
RCC_T5--7	chr17:7189233	T	NA	25	0	25	55.000	10.079	0	0	0	25	0	SLC2A4	intronic	NA
RCC_T5--GL	chr17:7189233	T	NA	44	0	44	54.341	9.942	0	0	0	44	0	SLC2A4	intronic	NA
RCC_T5--1	chr17:72285826	T	NA	27	0	27	65.296	5.869	0	0	0	27	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--2	chr17:72285826	T	NA	38	0	38	67.000	7.226	0	0	0	38	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--3	chr17:72285826	T	NA	32	0	32	65.688	8.134	0	0	0	32	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--4	chr17:72285826	T	A	28	0.143	24	67.375	3.820	4	70.750	1.258	24	4	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--5	chr17:72285826	T	NA	36	0	36	64.306	8.376	0	0	0	36	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--6	chr17:72285826	T	NA	35	0	35	65.057	8.044	0	0	0	35	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--7	chr17:72285826	T	NA	27	0	27	62.630	11.682	0	0	0	27	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr17:72285826	T	NA	38	0	38	67.421	6.844	0	0	0	38	0	DNAI2	exonic	nonsynonymous_SNV
RCC_T5--1	chr17:74010609	G	NA	31	0	31	67.194	6.052	0	0	0	31	0	EVPL	exonic	synonymous_SNV
RCC_T5--2	chr17:74010609	G	NA	29	0	29	67.448	4.128	0	0	0	29	0	EVPL	exonic	synonymous_SNV
RCC_T5--3	chr17:74010609	G	NA	19	0	19	65.842	4.561	0	0	0	19	0	EVPL	exonic	synonymous_SNV
RCC_T5--4	chr17:74010609	G	A	29	0.138	25	68.640	2.660	4	62.250	6.898	25	4	EVPL	exonic	synonymous_SNV
RCC_T5--5	chr17:74010609	G	NA	26	0	26	66.038	5.204	0	0	0	26	0	EVPL	exonic	synonymous_SNV
RCC_T5--6	chr17:74010609	G	NA	27	0	27	66.593	7.423	0	0	0	27	0	EVPL	exonic	synonymous_SNV
RCC_T5--7	chr17:74010609	G	NA	37	0	37	65.297	7.597	0	0	0	37	0	EVPL	exonic	synonymous_SNV
RCC_T5--GL	chr17:74010609	G	NA	45	0	45	66.556	4.054	0	0	0	45	0	EVPL	exonic	synonymous_SNV
RCC_T5--1	chr17:76130905	G	NA	24	0	24	60.917	9.376	0	0	0	24	0	TMC8	intronic	NA
RCC_T5--2	chr17:76130905	G	NA	24	0	24	59.625	9.306	0	0	0	24	0	TMC8	intronic	NA
RCC_T5--3	chr17:76130905	G	NA	24	0	24	62.083	8.235	0	0	0	24	0	TMC8	intronic	NA
RCC_T5--4	chr17:76130905	G	T	29	0.138	25	64.120	4.438	4	65.000	2.000	25	4	TMC8	intronic	NA
RCC_T5--5	chr17:76130905	G	NA	27	0	27	61.741	8.524	0	0	0	27	0	TMC8	intronic	NA
RCC_T5--6	chr17:76130905	G	NA	16	0	16	64.875	2.754	0	0	0	16	0	TMC8	intronic	NA
RCC_T5--7	chr17:76130905	G	NA	26	0	26	60.692	9.553	0	0	0	26	0	TMC8	intronic	NA
RCC_T5--GL	chr17:76130905	G	NA	43	0	43	64.860	3.241	0	0	0	43	0	TMC8	intronic	NA
RCC_T5--1	chr17:78082232	G	NA	11	0	11	61.182	10.018	0	0	0	11	0	GAA	intronic	NA
RCC_T5--2	chr17:78082232	G	C	18	0.333	12	59.500	10.229	6	33.500	1.225	12	6	GAA	intronic	NA
RCC_T5--3	chr17:78082232	G	C	30	0.167	25	49.760	14.324	5	33.000	0.000	25	5	GAA	intronic	NA
RCC_T5--4	chr17:78082232	G	NA	28	0	26	58.462	10.655	0	0	0	26	0	GAA	intronic	NA
RCC_T5--5	chr17:78082232	G	NA	39	0	38	58.526	11.977	0	0	0	38	0	GAA	intronic	NA
RCC_T5--6	chr17:78082232	G	C	40	0.075	36	54.111	12.423	3	33.000	0.000	36	3	GAA	intronic	NA
RCC_T5--7	chr17:78082232	G	C	42	0.048	40	55.075	13.004	2	33.000	0.000	40	2	GAA	intronic	NA
RCC_T5--GL	chr17:78082232	G	NA	34	0	34	55.088	13.469	0	0	0	34	0	GAA	intronic	NA
RCC_T5--1	chr17:78184422	G	NA	29	0	28	63.071	12.126	0	0	0	28	0	SGSH	exonic	synonymous_SNV
RCC_T5--2	chr17:78184422	G	NA	24	0	24	66.833	3.116	0	0	0	24	0	SGSH	exonic	synonymous_SNV
RCC_T5--3	chr17:78184422	G	NA	24	0	24	65.167	5.045	0	0	0	24	0	SGSH	exonic	synonymous_SNV
RCC_T5--4	chr17:78184422	G	A	17	0.235	13	68.538	3.711	4	55.750	15.650	13	4	SGSH	exonic	synonymous_SNV
RCC_T5--5	chr17:78184422	G	NA	25	0	25	65.160	7.696	0	0	0	25	0	SGSH	exonic	synonymous_SNV
RCC_T5--6	chr17:78184422	G	NA	19	0	19	65.158	4.285	0	0	0	19	0	SGSH	exonic	synonymous_SNV
RCC_T5--7	chr17:78184422	G	NA	14	0	14	63.286	9.335	0	0	0	14	0	SGSH	exonic	synonymous_SNV
RCC_T5--GL	chr17:78184422	G	NA	40	0	40	62.350	9.421	0	0	0	40	0	SGSH	exonic	synonymous_SNV
RCC_T5--1	chr17:80020850	C	NA	34	0	34	65.206	5.607	0	0	0	34	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--2	chr17:80020850	C	NA	25	0	25	67.560	3.927	0	0	0	25	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--3	chr17:80020850	C	NA	30	0	30	62.367	11.174	0	0	0	30	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--4	chr17:80020850	C	A	37	0.108	33	68.303	2.878	4	65.750	3.775	33	4	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--5	chr17:80020850	C	NA	39	0	39	65.282	7.294	0	0	0	39	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--6	chr17:80020850	C	NA	39	0	39	64.872	7.891	0	0	0	39	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--7	chr17:80020850	C	NA	32	0	32	65.781	6.328	0	0	0	32	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--GL	chr17:80020850	C	NA	46	0	46	66.500	4.569	0	0	0	46	0	DUS1L(NM_022156:exon6:c.398-1G>T)	splicing	NA
RCC_T5--1	chr17:80277322	G	NA	21	0	21	64.857	5.013	0	0	0	21	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--2	chr17:80277322	G	NA	41	0	41	62.415	10.691	0	0	0	41	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--3	chr17:80277322	G	NA	30	0	30	62.000	9.613	0	0	0	30	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--4	chr17:80277322	G	A	36	0.111	32	63.500	10.907	4	59.000	3.367	32	4	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--5	chr17:80277322	G	NA	48	0	48	60.104	11.324	0	0	0	48	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--6	chr17:80277322	G	NA	36	0	36	63.833	6.483	0	0	0	36	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--7	chr17:80277322	G	NA	55	0	55	62.582	9.693	0	0	0	55	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--GL	chr17:80277322	G	NA	34	0	34	65.088	6.965	0	0	0	34	0	CD7(dist=1842),SECTM1(dist=1578)	intergenic	NA
RCC_T5--1	chr17:8052532	A	C	89	0.056	49	65.694	6.724	5	57.200	12.458	49	5	PER1	intronic	NA
RCC_T5--2	chr17:8052532	A	C	70	0.071	49	67.469	4.037	5	59.400	6.804	49	5	PER1	intronic	NA
RCC_T5--3	chr17:8052532	A	C	66	0.106	42	65.643	6.625	7	57.143	15.518	42	7	PER1	intronic	NA
RCC_T5--4	chr17:8052532	A	C	84	0.048	52	67.231	3.305	4	60.250	6.238	52	4	PER1	intronic	NA
RCC_T5--5	chr17:8052532	A	C	62	0.065	41	68.171	3.376	4	64.500	3.000	41	4	PER1	intronic	NA
RCC_T5--6	chr17:8052532	A	C	70	0.100	45	67.333	4.791	7	58.714	12.606	45	7	PER1	intronic	NA
RCC_T5--7	chr17:8052532	A	C	75	0.067	45	67.178	8.100	5	65.600	2.608	45	5	PER1	intronic	NA
RCC_T5--GL	chr17:8052532	A	NA	95	0	58	67.293	6.347	0	0	0	58	0	PER1	intronic	NA
RCC_T5--1	chr17:8135877	A	NA	19	0	17	59.765	9.011	0	0	0	17	0	CTC1	intronic	NA
RCC_T5--2	chr17:8135877	A	NA	22	0	22	60.727	5.658	0	0	0	22	0	CTC1	intronic	NA
RCC_T5--3	chr17:8135877	A	NA	25	0	25	60.880	7.038	0	0	0	25	0	CTC1	intronic	NA
RCC_T5--4	chr17:8135877	A	NA	25	0	25	61.920	5.115	0	0	0	25	0	CTC1	intronic	NA
RCC_T5--5	chr17:8135877	A	NA	29	0	29	60.552	6.550	0	0	0	29	0	CTC1	intronic	NA
RCC_T5--6	chr17:8135877	A	C	26	0.154	22	58.955	8.549	4	40.500	1.000	22	4	CTC1	intronic	NA
RCC_T5--7	chr17:8135877	A	NA	16	0	16	62.750	4.583	0	0	0	16	0	CTC1	intronic	NA
RCC_T5--GL	chr17:8135877	A	NA	39	0	39	59.179	9.822	0	0	0	39	0	CTC1	intronic	NA
RCC_T5--1	chr17:8660961	G	NA	13	0	13	61.923	6.958	0	0	0	13	0	SPDYE4	intronic	NA
RCC_T5--2	chr17:8660961	G	NA	15	0	15	66.267	3.863	0	0	0	15	0	SPDYE4	intronic	NA
RCC_T5--3	chr17:8660961	G	T	15	0.200	12	58.667	13.607	3	53.000	17.436	12	3	SPDYE4	intronic	NA
RCC_T5--4	chr17:8660961	G	NA	19	0	19	65.789	5.623	0	0	0	19	0	SPDYE4	intronic	NA
RCC_T5--5	chr17:8660961	G	NA	23	0	23	63.435	4.756	0	0	0	23	0	SPDYE4	intronic	NA
RCC_T5--6	chr17:8660961	G	NA	10	0	10	65.000	10.371	0	0	0	10	0	SPDYE4	intronic	NA
RCC_T5--7	chr17:8660961	G	T	13	0.077	12	67.417	5.854	1	38.000	0.000	12	1	SPDYE4	intronic	NA
RCC_T5--GL	chr17:8660961	G	NA	33	0	33	65.485	6.001	0	0	0	33	0	SPDYE4	intronic	NA
RCC_T5--1	chr1:8117364	G	NA	23	0	23	65.130	8.198	0	0	0	23	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--2	chr1:8117364	G	NA	38	0	38	64.789	8.406	0	0	0	38	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--3	chr1:8117364	G	NA	22	0	22	65.227	6.597	0	0	0	22	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--4	chr1:8117364	G	T	16	0.250	12	68.583	2.906	4	67.000	1.414	12	4	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--5	chr1:8117364	G	NA	12	0	12	68.500	4.296	0	0	0	12	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--6	chr1:8117364	G	NA	22	0	22	64.273	8.664	0	0	0	22	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--7	chr1:8117364	G	NA	13	0	13	68.385	4.857	0	0	0	13	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--GL	chr1:8117364	G	NA	36	0	36	63.222	11.243	0	0	0	36	0	ERRFI1(dist=30971),SLC45A1(dist=267026)	intergenic	NA
RCC_T5--1	chr18:14763979	C	G	143	0.189	114	67.807	4.343	27	69.037	3.956	114	27	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--2	chr18:14763979	C	G	175	0.154	148	68.892	4.321	27	69.556	2.887	148	27	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--3	chr18:14763979	C	G	176	0.136	152	68.493	3.953	24	68.625	3.786	152	24	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--4	chr18:14763979	C	G	198	0.162	166	69.096	3.233	32	69.375	2.697	166	32	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--5	chr18:14763979	C	G	124	0.218	97	67.948	4.417	27	65.889	8.732	97	27	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--6	chr18:14763979	C	G	207	0.150	176	68.784	4.582	31	67.968	3.656	176	31	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--7	chr18:14763979	C	G	155	0.213	122	67.738	5.593	33	68.970	3.377	122	33	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr18:14763979	C	NA	196	0	196	68.337	3.502	0	0	0	196	0	ANKRD30B	exonic	nonsynonymous_SNV
RCC_T5--1	chr18:2728741	T	G	60	0.017	16	66.188	3.167	1	33.000	0.000	16	1	SMCHD1	intronic	NA
RCC_T5--2	chr18:2728741	T	NA	63	0	20	67.000	2.384	0	0	0	20	0	SMCHD1	intronic	NA
RCC_T5--3	chr18:2728741	T	G	87	0.011	24	66.417	3.092	1	33.000	0.000	24	1	SMCHD1	intronic	NA
RCC_T5--4	chr18:2728741	T	G	80	0.050	14	67.643	2.706	4	48.000	17.340	14	4	SMCHD1	intronic	NA
RCC_T5--5	chr18:2728741	T	G	82	0.024	26	65.654	3.310	2	33.000	0.000	26	2	SMCHD1	intronic	NA
RCC_T5--6	chr18:2728741	T	G	110	0.009	24	64.625	7.961	1	55.000	0.000	24	1	SMCHD1	intronic	NA
RCC_T5--7	chr18:2728741	T	G	81	0.012	24	65.583	3.787	1	62.000	0.000	24	1	SMCHD1	intronic	NA
RCC_T5--GL	chr18:2728741	T	NA	122	0	41	67.659	3.046	0	0	0	41	0	SMCHD1	intronic	NA
RCC_T5--1	chr18:30350585	A	C	17	0.059	16	50.375	10.996	1	36.000	0.000	16	1	KLHL14	UTR5	NA
RCC_T5--2	chr18:30350585	A	C	19	0.105	17	57.706	9.413	2	36.000	4.243	17	2	KLHL14	UTR5	NA
RCC_T5--3	chr18:30350585	A	NA	19	0	19	56.421	10.292	0	0	0	19	0	KLHL14	UTR5	NA
RCC_T5--4	chr18:30350585	A	C	31	0.161	26	55.346	9.769	5	40.000	5.477	26	5	KLHL14	UTR5	NA
RCC_T5--5	chr18:30350585	A	C	35	0.029	34	58.000	9.964	1	43.000	0.000	34	1	KLHL14	UTR5	NA
RCC_T5--6	chr18:30350585	A	C	31	0.065	29	60.034	7.908	2	38.000	1.414	29	2	KLHL14	UTR5	NA
RCC_T5--7	chr18:30350585	A	C	34	0.088	30	56.600	9.988	3	40.667	7.234	30	3	KLHL14	UTR5	NA
RCC_T5--GL	chr18:30350585	A	NA	35	0	35	60.914	7.018	0	0	0	35	0	KLHL14	UTR5	NA
RCC_T5--1	chr1:84764119	A	C	31	0.065	29	52.379	11.137	2	33.000	0.000	29	2	SAMD13	UTR5	NA
RCC_T5--2	chr1:84764119	A	C	51	0.157	43	53.465	11.268	8	37.000	5.928	43	8	SAMD13	UTR5	NA
RCC_T5--3	chr1:84764119	A	C	36	0.194	29	54.483	10.249	7	39.286	8.200	29	7	SAMD13	UTR5	NA
RCC_T5--4	chr1:84764119	A	C	47	0.021	46	51.413	11.336	1	46.000	0.000	46	1	SAMD13	UTR5	NA
RCC_T5--5	chr1:84764119	A	C	70	0.057	65	51.123	11.568	4	33.750	1.500	65	4	SAMD13	UTR5	NA
RCC_T5--6	chr1:84764119	A	C	41	0.146	35	51.429	12.074	6	41.000	11.402	35	6	SAMD13	UTR5	NA
RCC_T5--7	chr1:84764119	A	C	51	0.059	48	54.229	8.628	3	37.333	7.506	48	3	SAMD13	UTR5	NA
RCC_T5--GL	chr1:84764119	A	NA	49	0	49	52.061	10.651	0	0	0	49	0	SAMD13	UTR5	NA
RCC_T5--1	chr18:57106606	A	G	24	0.125	21	49.476	11.053	3	33.000	0.000	21	3	CCBE1	intronic	NA
RCC_T5--2	chr18:57106606	A	G	21	0.238	16	49.375	14.132	5	33.000	0.000	16	5	CCBE1	intronic	NA
RCC_T5--3	chr18:57106606	A	G	26	0.154	22	51.909	13.162	4	34.500	1.732	22	4	CCBE1	intronic	NA
RCC_T5--4	chr18:57106606	A	G	51	0.078	47	54.809	11.631	4	35.500	5.000	47	4	CCBE1	intronic	NA
RCC_T5--5	chr18:57106606	A	G	32	0.031	31	54.419	11.298	1	36.000	0.000	31	1	CCBE1	intronic	NA
RCC_T5--6	chr18:57106606	A	G	33	0.242	25	52.920	12.506	8	33.375	1.061	25	8	CCBE1	intronic	NA
RCC_T5--7	chr18:57106606	A	G	22	0.045	21	56.381	10.566	1	43.000	0.000	21	1	CCBE1	intronic	NA
RCC_T5--GL	chr18:57106606	A	NA	59	0	59	55.610	11.854	0	0	0	59	0	CCBE1	intronic	NA
RCC_T5--1	chr18:63430081	G	NA	59	0	58	63.362	6.315	0	0	0	58	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--2	chr18:63430081	G	NA	55	0	55	63.236	8.745	0	0	0	55	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--3	chr18:63430081	G	NA	49	0	49	64.020	7.353	0	0	0	49	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--4	chr18:63430081	G	NA	73	0	73	65.342	8.226	0	0	0	73	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--5	chr18:63430081	G	NA	59	0	59	64.763	6.260	0	0	0	59	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--6	chr18:63430081	G	A	69	0.014	68	61.809	9.782	1	33.000	0.000	68	1	CDH7	exonic	nonsynonymous_SNV
RCC_T5--7	chr18:63430081	G	A	60	0.217	47	66.638	3.738	13	66.308	3.449	47	13	CDH7	exonic	nonsynonymous_SNV
RCC_T5--GL	chr18:63430081	G	NA	75	0	75	65.747	6.603	0	0	0	75	0	CDH7	exonic	nonsynonymous_SNV
RCC_T5--1	chr18:67801756	T	A	118	0.110	104	62.808	9.734	13	66.462	4.807	104	13	RTTN	exonic	nonsynonymous_SNV
RCC_T5--2	chr18:67801756	T	A	129	0.101	116	64.017	8.056	13	64.923	10.316	116	13	RTTN	exonic	nonsynonymous_SNV
RCC_T5--3	chr18:67801756	T	A	129	0.140	111	64.135	7.212	18	66.778	4.124	111	18	RTTN	exonic	nonsynonymous_SNV
RCC_T5--4	chr18:67801756	T	A	148	0.162	122	66.172	6.013	24	68.542	3.476	122	24	RTTN	exonic	nonsynonymous_SNV
RCC_T5--5	chr18:67801756	T	A	91	0.099	82	63.902	9.003	9	68.667	3.279	82	9	RTTN	exonic	nonsynonymous_SNV
RCC_T5--6	chr18:67801756	T	A	125	0.224	97	64.948	8.633	28	64.500	9.613	97	28	RTTN	exonic	nonsynonymous_SNV
RCC_T5--7	chr18:67801756	T	A	116	0.267	84	65.262	6.292	31	66.710	8.986	84	31	RTTN	exonic	nonsynonymous_SNV
RCC_T5--GL	chr18:67801756	T	NA	117	0	117	64.274	8.070	0	0	0	117	0	RTTN	exonic	nonsynonymous_SNV
RCC_T5--1	chr18:74154934	A	C	21	0.048	19	55.158	11.486	1	33.000	0.000	19	1	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--2	chr18:74154934	A	C	18	0.222	14	52.429	13.574	4	35.250	1.500	14	4	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--3	chr18:74154934	A	C	20	0.150	16	49.812	10.603	3	35.333	2.082	16	3	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--4	chr18:74154934	A	C	26	0.038	22	54.545	12.957	1	46.000	0.000	22	1	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--5	chr18:74154934	A	C	29	0.103	26	55.077	11.074	3	34.000	1.732	26	3	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--6	chr18:74154934	A	C	20	0.050	19	52.211	12.399	1	33.000	0.000	19	1	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--7	chr18:74154934	A	C	21	0.048	20	50.800	10.211	1	33.000	0.000	20	1	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--GL	chr18:74154934	A	NA	36	0	36	55.083	11.188	0	0	0	36	0	ZNF516	exonic	nonsynonymous_SNV
RCC_T5--1	chr18:77104379	C	NA	21	0	21	67.619	4.364	0	0	0	21	0	ATP9B	intronic	NA
RCC_T5--2	chr18:77104379	C	NA	25	0	25	67.920	3.796	0	0	0	25	0	ATP9B	intronic	NA
RCC_T5--3	chr18:77104379	C	NA	35	0	35	68.629	4.145	0	0	0	35	0	ATP9B	intronic	NA
RCC_T5--4	chr18:77104379	C	A	33	0.121	29	68.724	4.131	4	68.250	3.202	29	4	ATP9B	intronic	NA
RCC_T5--5	chr18:77104379	C	NA	36	0	36	67.556	6.855	0	0	0	36	0	ATP9B	intronic	NA
RCC_T5--6	chr18:77104379	C	NA	31	0	31	64.419	9.736	0	0	0	31	0	ATP9B	intronic	NA
RCC_T5--7	chr18:77104379	C	NA	31	0	31	68.355	3.342	0	0	0	31	0	ATP9B	intronic	NA
RCC_T5--GL	chr18:77104379	C	NA	38	0	38	66.789	8.444	0	0	0	38	0	ATP9B	intronic	NA
RCC_T5--1	chr1:89582609	T	A	99	0.131	85	68.576	3.825	13	67.769	2.555	85	13	GBP2	intronic	NA
RCC_T5--2	chr1:89582609	T	NA	125	0	125	68.648	4.467	0	0	0	125	0	GBP2	intronic	NA
RCC_T5--3	chr1:89582609	T	NA	105	0	105	68.257	5.029	0	0	0	105	0	GBP2	intronic	NA
RCC_T5--4	chr1:89582609	T	NA	123	0	123	68.951	5.232	0	0	0	123	0	GBP2	intronic	NA
RCC_T5--5	chr1:89582609	T	A	94	0.074	87	68.414	4.943	7	66.571	5.318	87	7	GBP2	intronic	NA
RCC_T5--6	chr1:89582609	T	NA	102	0	102	68.333	5.092	0	0	0	102	0	GBP2	intronic	NA
RCC_T5--7	chr1:89582609	T	A	88	0.011	87	69.966	3.179	1	72.000	0.000	87	1	GBP2	intronic	NA
RCC_T5--GL	chr1:89582609	T	NA	128	0	128	68.898	4.886	0	0	0	128	0	GBP2	intronic	NA
RCC_T5--1	chr1:896939	A	NA	25	0	25	58.160	10.877	0	0	0	25	0	KLHL17	intronic	NA
RCC_T5--2	chr1:896939	A	C	21	0.048	20	57.800	11.813	1	33.000	0.000	20	1	KLHL17	intronic	NA
RCC_T5--3	chr1:896939	A	C	25	0.200	20	55.650	10.564	5	34.800	1.643	20	5	KLHL17	intronic	NA
RCC_T5--4	chr1:896939	A	NA	29	0	28	60.929	10.791	0	0	0	28	0	KLHL17	intronic	NA
RCC_T5--5	chr1:896939	A	C	33	0.061	31	57.387	11.828	2	34.500	2.121	31	2	KLHL17	intronic	NA
RCC_T5--6	chr1:896939	A	C	20	0.050	18	56.056	12.831	1	36.000	0.000	18	1	KLHL17	intronic	NA
RCC_T5--7	chr1:896939	A	NA	18	0	18	56.611	14.308	0	0	0	18	0	KLHL17	intronic	NA
RCC_T5--GL	chr1:896939	A	NA	33	0	33	57.545	10.820	0	0	0	33	0	KLHL17	intronic	NA
RCC_T5--1	chr19:10077063	T	C	19	0.053	18	57.389	13.899	1	33.000	0.000	18	1	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:10077063	T	C	21	0.048	20	52.650	13.011	1	33.000	0.000	20	1	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:10077063	T	C	12	0.417	7	58.714	17.746	5	33.600	1.342	7	5	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:10077063	T	NA	24	0	24	54.583	12.155	0	0	0	24	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:10077063	T	C	21	0.048	20	53.600	11.618	1	33.000	0.000	20	1	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:10077063	T	C	12	0.167	8	45.875	12.688	2	36.000	0.000	8	2	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:10077063	T	NA	20	0	20	53.250	13.282	0	0	0	20	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:10077063	T	NA	33	0	33	54.121	11.768	0	0	0	33	0	COL5A3	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:10468648	C	NA	20	0	20	62.200	8.532	0	0	0	20	0	TYK2	intronic	NA
RCC_T5--2	chr19:10468648	C	NA	14	0	14	66.929	4.843	0	0	0	14	0	TYK2	intronic	NA
RCC_T5--3	chr19:10468648	C	NA	18	0	18	65.167	6.802	0	0	0	18	0	TYK2	intronic	NA
RCC_T5--4	chr19:10468648	C	NA	17	0	17	64.412	9.843	0	0	0	17	0	TYK2	intronic	NA
RCC_T5--5	chr19:10468648	C	NA	19	0	19	66.000	3.496	0	0	0	19	0	TYK2	intronic	NA
RCC_T5--6	chr19:10468648	C	NA	13	0	13	67.000	3.894	0	0	0	13	0	TYK2	intronic	NA
RCC_T5--7	chr19:10468648	C	T	19	0.263	14	65.500	4.202	5	58.200	14.114	14	5	TYK2	intronic	NA
RCC_T5--GL	chr19:10468648	C	NA	33	0	33	65.121	9.532	0	0	0	33	0	TYK2	intronic	NA
RCC_T5--1	chr19:10943718	A	NA	31	0	31	58.516	11.486	0	0	0	31	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:10943718	A	NA	30	0	30	61.667	10.675	0	0	0	30	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:10943718	A	NA	29	0	29	65.103	7.282	0	0	0	29	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:10943718	A	NA	27	0	27	64.259	7.278	0	0	0	27	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:10943718	A	NA	26	0	26	66.885	7.591	0	0	0	26	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:10943718	A	NA	26	0	26	60.308	9.182	0	0	0	26	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:10943718	A	T	19	0.211	15	63.400	8.458	4	46.750	9.743	15	4	TMED1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:10943718	A	NA	40	0	40	63.950	5.233	0	0	0	40	0	TMED1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:11222105	T	G	36	0.056	34	56.676	10.750	2	41.500	6.364	34	2	LDLR	intronic	NA
RCC_T5--2	chr19:11222105	T	G	34	0.029	33	55.091	11.120	1	37.000	0.000	33	1	LDLR	intronic	NA
RCC_T5--3	chr19:11222105	T	G	32	0.188	26	57.654	11.589	6	36.667	1.966	26	6	LDLR	intronic	NA
RCC_T5--4	chr19:11222105	T	NA	54	0	54	57.778	10.269	0	0	0	54	0	LDLR	intronic	NA
RCC_T5--5	chr19:11222105	T	G	48	0.042	45	55.511	12.598	2	37.000	0.000	45	2	LDLR	intronic	NA
RCC_T5--6	chr19:11222105	T	NA	50	0	50	55.160	11.518	0	0	0	50	0	LDLR	intronic	NA
RCC_T5--7	chr19:11222105	T	G	43	0.070	40	57.300	12.692	3	37.000	6.928	40	3	LDLR	intronic	NA
RCC_T5--GL	chr19:11222105	T	NA	87	0	87	58.885	10.071	0	0	0	87	0	LDLR	intronic	NA
RCC_T5--1	chr19:11224148	G	A	29	0.138	25	62.640	11.022	4	56.750	16.998	25	4	LDLR	intronic	NA
RCC_T5--2	chr19:11224148	G	A	33	0.242	25	65.320	7.999	8	63.125	7.298	25	8	LDLR	intronic	NA
RCC_T5--3	chr19:11224148	G	A	28	0.107	25	65.160	8.581	3	60.333	4.509	25	3	LDLR	intronic	NA
RCC_T5--4	chr19:11224148	G	A	29	0.069	27	68.407	4.405	2	55.500	9.192	27	2	LDLR	intronic	NA
RCC_T5--5	chr19:11224148	G	A	23	0.348	15	63.000	10.461	8	61.000	9.666	15	8	LDLR	intronic	NA
RCC_T5--6	chr19:11224148	G	A	28	0.107	25	63.920	9.004	3	67.333	2.309	25	3	LDLR	intronic	NA
RCC_T5--7	chr19:11224148	G	A	22	0.318	15	65.867	9.606	7	63.143	7.603	15	7	LDLR	intronic	NA
RCC_T5--GL	chr19:11224148	G	NA	37	0	37	64.000	10.187	0	0	0	37	0	LDLR	intronic	NA
RCC_T5--1	chr19:11917401	A	C	91	0.242	69	65.507	5.684	22	62.682	11.922	69	22	ZNF491	exonic	synonymous_SNV
RCC_T5--2	chr19:11917401	A	C	92	0.098	83	66.048	7.819	9	66.778	4.919	83	9	ZNF491	exonic	synonymous_SNV
RCC_T5--3	chr19:11917401	A	C	82	0.061	77	66.234	6.943	5	68.400	4.336	77	5	ZNF491	exonic	synonymous_SNV
RCC_T5--4	chr19:11917401	A	C	89	0.101	80	67.950	4.106	9	67.000	9.394	80	9	ZNF491	exonic	synonymous_SNV
RCC_T5--5	chr19:11917401	A	C	85	0.247	64	65.781	6.514	21	64.000	7.899	64	21	ZNF491	exonic	synonymous_SNV
RCC_T5--6	chr19:11917401	A	C	94	0.138	81	65.938	5.292	13	63.923	9.768	81	13	ZNF491	exonic	synonymous_SNV
RCC_T5--7	chr19:11917401	A	C	70	0.286	50	67.460	4.195	20	68.450	2.819	50	20	ZNF491	exonic	synonymous_SNV
RCC_T5--GL	chr19:11917401	A	NA	169	0	169	66.396	6.566	0	0	0	169	0	ZNF491	exonic	synonymous_SNV
RCC_T5--1	chr19:13220985	T	NA	33	0	33	63.182	6.640	0	0	0	33	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:13220985	T	NA	36	0	36	64.167	8.034	0	0	0	36	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:13220985	T	NA	33	0	33	62.091	9.713	0	0	0	33	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:13220985	T	C	37	0.108	33	64.091	9.248	4	65.750	3.096	33	4	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:13220985	T	NA	31	0	31	64.226	8.032	0	0	0	31	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:13220985	T	NA	33	0	33	63.788	9.784	0	0	0	33	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:13220985	T	NA	33	0	33	66.091	3.574	0	0	0	33	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:13220985	T	NA	36	0	36	65.250	8.129	0	0	0	36	0	TRMT1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:13386738	A	C	32	0.062	29	57.690	12.748	2	38.000	1.414	29	2	CACNA1A	exonic	synonymous_SNV
RCC_T5--2	chr19:13386738	A	C	54	0.056	51	60.216	10.917	3	34.333	2.309	51	3	CACNA1A	exonic	synonymous_SNV
RCC_T5--3	chr19:13386738	A	C	35	0.029	33	57.061	12.470	1	37.000	0.000	33	1	CACNA1A	exonic	synonymous_SNV
RCC_T5--4	chr19:13386738	A	C	36	0.056	34	61.147	8.550	2	35.000	2.828	34	2	CACNA1A	exonic	synonymous_SNV
RCC_T5--5	chr19:13386738	A	C	33	0.030	32	59.906	7.993	1	33.000	0.000	32	1	CACNA1A	exonic	synonymous_SNV
RCC_T5--6	chr19:13386738	A	C	34	0.206	27	58.519	11.617	7	37.714	1.254	27	7	CACNA1A	exonic	synonymous_SNV
RCC_T5--7	chr19:13386738	A	C	24	0.042	23	61.522	5.333	1	45.000	0.000	23	1	CACNA1A	exonic	synonymous_SNV
RCC_T5--GL	chr19:13386738	A	NA	36	0	36	59.667	11.844	0	0	0	36	0	CACNA1A	exonic	synonymous_SNV
RCC_T5--1	chr19:14000568	T	G	15	0.067	14	54.071	15.112	1	42.000	0.000	14	1	C19orf57	exonic	synonymous_SNV
RCC_T5--2	chr19:14000568	T	G	16	0.125	13	54.308	13.047	2	35.000	2.828	13	2	C19orf57	exonic	synonymous_SNV
RCC_T5--3	chr19:14000568	T	G	20	0.200	16	54.062	9.801	4	34.000	2.000	16	4	C19orf57	exonic	synonymous_SNV
RCC_T5--4	chr19:14000568	T	G	22	0.136	19	64.158	7.143	3	37.667	5.033	19	3	C19orf57	exonic	synonymous_SNV
RCC_T5--5	chr19:14000568	T	G	25	0.040	24	58.375	9.495	1	38.000	0.000	24	1	C19orf57	exonic	synonymous_SNV
RCC_T5--6	chr19:14000568	T	G	24	0.250	18	60.444	10.662	6	40.667	7.285	18	6	C19orf57	exonic	synonymous_SNV
RCC_T5--7	chr19:14000568	T	G	17	0.059	16	55.750	8.473	1	39.000	0.000	16	1	C19orf57	exonic	synonymous_SNV
RCC_T5--GL	chr19:14000568	T	NA	38	0	38	57.737	10.363	0	0	0	38	0	C19orf57	exonic	synonymous_SNV
RCC_T5--1	chr19:14028841	C	NA	25	0	25	65.240	5.093	0	0	0	25	0	CC2D1A	intronic	NA
RCC_T5--2	chr19:14028841	C	NA	20	0	20	68.450	3.967	0	0	0	20	0	CC2D1A	intronic	NA
RCC_T5--3	chr19:14028841	C	NA	22	0	22	66.591	4.043	0	0	0	22	0	CC2D1A	intronic	NA
RCC_T5--4	chr19:14028841	C	T	33	0.121	29	64.586	8.810	4	62.750	9.979	29	4	CC2D1A	intronic	NA
RCC_T5--5	chr19:14028841	C	NA	22	0	22	64.182	7.601	0	0	0	22	0	CC2D1A	intronic	NA
RCC_T5--6	chr19:14028841	C	NA	26	0	26	67.423	6.313	0	0	0	26	0	CC2D1A	intronic	NA
RCC_T5--7	chr19:14028841	C	T	27	0.037	26	67.538	5.428	1	60.000	0.000	26	1	CC2D1A	intronic	NA
RCC_T5--GL	chr19:14028841	C	NA	41	0	41	65.756	7.224	0	0	0	41	0	CC2D1A	intronic	NA
RCC_T5--1	chr19:15465981	G	NA	20	0	20	60.150	12.343	0	0	0	20	0	AKAP8	exonic	synonymous_SNV
RCC_T5--2	chr19:15465981	G	A	34	0.029	33	62.970	8.278	1	68.000	0.000	33	1	AKAP8	exonic	synonymous_SNV
RCC_T5--3	chr19:15465981	G	NA	33	0	33	62.394	11.149	0	0	0	33	0	AKAP8	exonic	synonymous_SNV
RCC_T5--4	chr19:15465981	G	A	36	0.111	32	66.031	4.533	4	58.000	6.683	32	4	AKAP8	exonic	synonymous_SNV
RCC_T5--5	chr19:15465981	G	NA	38	0	38	63.711	7.410	0	0	0	38	0	AKAP8	exonic	synonymous_SNV
RCC_T5--6	chr19:15465981	G	NA	28	0	27	64.407	7.982	0	0	0	27	0	AKAP8	exonic	synonymous_SNV
RCC_T5--7	chr19:15465981	G	NA	27	0	27	60.519	11.484	0	0	0	27	0	AKAP8	exonic	synonymous_SNV
RCC_T5--GL	chr19:15465981	G	NA	44	0	44	66.659	6.258	0	0	0	44	0	AKAP8	exonic	synonymous_SNV
RCC_T5--1	chr19:17091565	C	NA	25	0	25	63.840	5.482	0	0	0	25	0	CPAMD8	intronic	NA
RCC_T5--2	chr19:17091565	C	NA	19	0	19	64.895	8.647	0	0	0	19	0	CPAMD8	intronic	NA
RCC_T5--3	chr19:17091565	C	NA	17	0	17	66.706	3.981	0	0	0	17	0	CPAMD8	intronic	NA
RCC_T5--4	chr19:17091565	C	NA	25	0	25	65.960	8.239	0	0	0	25	0	CPAMD8	intronic	NA
RCC_T5--5	chr19:17091565	C	NA	15	0	15	64.600	9.530	0	0	0	15	0	CPAMD8	intronic	NA
RCC_T5--6	chr19:17091565	C	T	12	0.250	9	58.333	15.676	3	60.333	12.503	9	3	CPAMD8	intronic	NA
RCC_T5--7	chr19:17091565	C	NA	19	0	19	68.053	3.472	0	0	0	19	0	CPAMD8	intronic	NA
RCC_T5--GL	chr19:17091565	C	NA	38	0	38	65.421	6.931	0	0	0	38	0	CPAMD8	intronic	NA
RCC_T5--1	chr19:17452461	T	G	40	0.025	39	59.744	10.472	1	33.000	0.000	39	1	GTPBP3	exonic	synonymous_SNV
RCC_T5--2	chr19:17452461	T	G	34	0.029	33	58.152	12.013	1	36.000	0.000	33	1	GTPBP3	exonic	synonymous_SNV
RCC_T5--3	chr19:17452461	T	G	32	0.188	26	60.462	10.760	6	38.667	8.091	26	6	GTPBP3	exonic	synonymous_SNV
RCC_T5--4	chr19:17452461	T	NA	40	0	40	59.375	11.749	0	0	0	40	0	GTPBP3	exonic	synonymous_SNV
RCC_T5--5	chr19:17452461	T	NA	38	0	38	60.237	10.015	0	0	0	38	0	GTPBP3	exonic	synonymous_SNV
RCC_T5--6	chr19:17452461	T	NA	32	0	32	58.219	13.877	0	0	0	32	0	GTPBP3	exonic	synonymous_SNV
RCC_T5--7	chr19:17452461	T	G	42	0.048	40	59.750	10.729	2	34.500	2.121	40	2	GTPBP3	exonic	synonymous_SNV
RCC_T5--GL	chr19:17452461	T	NA	58	0	57	60.877	9.459	0	0	0	57	0	GTPBP3	exonic	synonymous_SNV
RCC_T5--1	chr19:17487922	T	NA	25	0	25	59.400	12.440	0	0	0	25	0	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:17487922	T	G	17	0.118	15	55.667	15.008	2	36.500	0.707	15	2	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:17487922	T	G	17	0.059	16	56.938	12.954	1	37.000	0.000	16	1	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:17487922	T	NA	24	0	24	60.667	10.829	0	0	0	24	0	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:17487922	T	G	17	0.235	13	59.154	13.146	4	36.000	2.000	13	4	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:17487922	T	NA	27	0	27	60.593	12.589	0	0	0	27	0	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:17487922	T	G	16	0.125	14	61.214	11.212	2	39.000	8.485	14	2	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:17487922	T	NA	38	0	38	60.395	10.063	0	0	0	38	0	PLVAP	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:17679335	A	C	34	0.029	33	61.485	10.220	1	33.000	0.000	33	1	COLGALT1	exonic	synonymous_SNV
RCC_T5--2	chr19:17679335	A	C	44	0.068	41	63.000	9.778	3	34.000	1.732	41	3	COLGALT1	exonic	synonymous_SNV
RCC_T5--3	chr19:17679335	A	C	35	0.143	30	59.800	10.380	5	38.000	9.592	30	5	COLGALT1	exonic	synonymous_SNV
RCC_T5--4	chr19:17679335	A	C	31	0.032	29	58.862	11.880	1	48.000	0.000	29	1	COLGALT1	exonic	synonymous_SNV
RCC_T5--5	chr19:17679335	A	C	30	0.033	29	57.586	13.324	1	37.000	0.000	29	1	COLGALT1	exonic	synonymous_SNV
RCC_T5--6	chr19:17679335	A	C	31	0.194	25	65.480	7.990	6	33.500	1.225	25	6	COLGALT1	exonic	synonymous_SNV
RCC_T5--7	chr19:17679335	A	C	26	0.038	25	58.080	11.514	1	39.000	0.000	25	1	COLGALT1	exonic	synonymous_SNV
RCC_T5--GL	chr19:17679335	A	NA	48	0	48	63.750	9.622	0	0	0	48	0	COLGALT1	exonic	synonymous_SNV
RCC_T5--1	chr19:17941363	G	NA	28	0	28	59.607	11.117	0	0	0	28	0	JAK3	exonic	synonymous_SNV
RCC_T5--2	chr19:17941363	G	NA	32	0	32	61.688	10.575	0	0	0	32	0	JAK3	exonic	synonymous_SNV
RCC_T5--3	chr19:17941363	G	NA	18	0	18	59.278	12.555	0	0	0	18	0	JAK3	exonic	synonymous_SNV
RCC_T5--4	chr19:17941363	G	T	28	0.143	24	62.750	9.451	4	65.500	1.000	24	4	JAK3	exonic	synonymous_SNV
RCC_T5--5	chr19:17941363	G	NA	28	0	28	57.821	12.305	0	0	0	28	0	JAK3	exonic	synonymous_SNV
RCC_T5--6	chr19:17941363	G	NA	20	0	20	59.200	11.821	0	0	0	20	0	JAK3	exonic	synonymous_SNV
RCC_T5--7	chr19:17941363	G	NA	27	0	27	59.111	11.859	0	0	0	27	0	JAK3	exonic	synonymous_SNV
RCC_T5--GL	chr19:17941363	G	NA	37	0	37	65.081	7.005	0	0	0	37	0	JAK3	exonic	synonymous_SNV
RCC_T5--1	chr19:18123784	G	NA	24	0	24	62.375	7.418	0	0	0	24	0	ARRDC2	UTR3	NA
RCC_T5--2	chr19:18123784	G	NA	27	0	27	64.185	10.378	0	0	0	27	0	ARRDC2	UTR3	NA
RCC_T5--3	chr19:18123784	G	NA	28	0	28	65.286	9.079	0	0	0	28	0	ARRDC2	UTR3	NA
RCC_T5--4	chr19:18123784	G	T	35	0.114	31	67.129	7.261	4	68.000	2.309	31	4	ARRDC2	UTR3	NA
RCC_T5--5	chr19:18123784	G	NA	29	0	29	65.552	7.159	0	0	0	29	0	ARRDC2	UTR3	NA
RCC_T5--6	chr19:18123784	G	NA	18	0	18	66.444	8.952	0	0	0	18	0	ARRDC2	UTR3	NA
RCC_T5--7	chr19:18123784	G	NA	29	0	29	62.759	10.809	0	0	0	29	0	ARRDC2	UTR3	NA
RCC_T5--GL	chr19:18123784	G	NA	37	0	37	66.514	5.800	0	0	0	37	0	ARRDC2	UTR3	NA
RCC_T5--1	chr19:21579935	A	NA	21	0	21	55.333	10.850	0	0	0	21	0	ZNF493	UTR5	NA
RCC_T5--2	chr19:21579935	A	C	20	0.100	18	50.833	14.662	2	34.500	2.121	18	2	ZNF493	UTR5	NA
RCC_T5--3	chr19:21579935	A	C	26	0.192	20	56.500	14.620	5	36.800	5.357	20	5	ZNF493	UTR5	NA
RCC_T5--4	chr19:21579935	A	C	29	0.034	28	60.107	12.862	1	36.000	0.000	28	1	ZNF493	UTR5	NA
RCC_T5--5	chr19:21579935	A	C	17	0.059	16	59.250	9.990	1	33.000	0.000	16	1	ZNF493	UTR5	NA
RCC_T5--6	chr19:21579935	A	C	25	0.120	22	57.636	13.304	3	35.000	3.464	22	3	ZNF493	UTR5	NA
RCC_T5--7	chr19:21579935	A	NA	22	0	22	60.045	12.515	0	0	0	22	0	ZNF493	UTR5	NA
RCC_T5--GL	chr19:21579935	A	NA	34	0	34	62.471	7.617	0	0	0	34	0	ZNF493	UTR5	NA
RCC_T5--1	chr19:2216607	A	NA	27	0	27	58.296	10.805	0	0	0	27	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:2216607	A	C	33	0.152	28	56.679	13.092	5	42.600	7.668	28	5	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:2216607	A	C	18	0.056	16	62.250	12.003	1	33.000	0.000	16	1	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:2216607	A	C	27	0.148	23	58.478	11.516	4	36.000	2.449	23	4	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:2216607	A	C	30	0.100	27	61.074	9.683	3	36.333	5.774	27	3	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:2216607	A	C	21	0.095	18	61.500	8.933	2	34.500	2.121	18	2	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:2216607	A	C	16	0.062	14	56.714	13.680	1	37.000	0.000	14	1	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:2216607	A	NA	45	0	43	59.349	10.265	0	0	0	43	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:35829029	T	G	29	0.034	28	53.929	11.208	1	33.000	0.000	28	1	CD22	intronic	NA
RCC_T5--2	chr19:35829029	T	NA	25	0	25	53.080	12.100	0	0	0	25	0	CD22	intronic	NA
RCC_T5--3	chr19:35829029	T	G	29	0.069	27	57.259	10.357	2	34.500	2.121	27	2	CD22	intronic	NA
RCC_T5--4	chr19:35829029	T	NA	29	0	29	57.276	9.888	0	0	0	29	0	CD22	intronic	NA
RCC_T5--5	chr19:35829029	T	NA	21	0	21	55.571	9.667	0	0	0	21	0	CD22	intronic	NA
RCC_T5--6	chr19:35829029	T	G	22	0.182	18	54.500	11.331	4	39.500	4.041	18	4	CD22	intronic	NA
RCC_T5--7	chr19:35829029	T	G	20	0.100	17	57.471	7.116	2	36.000	0.000	17	2	CD22	intronic	NA
RCC_T5--GL	chr19:35829029	T	NA	35	0	35	57.914	10.526	0	0	0	35	0	CD22	intronic	NA
RCC_T5--1	chr19:36219619	C	G	16	0.125	13	57.615	14.186	2	43.500	7.778	13	2	KMT2B	intronic	NA
RCC_T5--2	chr19:36219619	C	NA	20	0	20	60.250	11.397	0	0	0	20	0	KMT2B	intronic	NA
RCC_T5--3	chr19:36219619	C	G	28	0.071	26	60.923	10.692	2	42.000	12.728	26	2	KMT2B	intronic	NA
RCC_T5--4	chr19:36219619	C	NA	41	0	39	60.333	11.148	0	0	0	39	0	KMT2B	intronic	NA
RCC_T5--5	chr19:36219619	C	NA	30	0	30	59.933	11.823	0	0	0	30	0	KMT2B	intronic	NA
RCC_T5--6	chr19:36219619	C	G	40	0.175	33	61.818	9.970	7	37.714	6.370	33	7	KMT2B	intronic	NA
RCC_T5--7	chr19:36219619	C	NA	38	0	38	61.895	9.311	0	0	0	38	0	KMT2B	intronic	NA
RCC_T5--GL	chr19:36219619	C	NA	34	0	34	60.000	12.764	0	0	0	34	0	KMT2B	intronic	NA
RCC_T5--1	chr19:36517154	C	NA	26	0	26	63.308	9.164	0	0	0	26	0	CLIP3	exonic	synonymous_SNV
RCC_T5--2	chr19:36517154	C	NA	36	0	36	64.389	7.632	0	0	0	36	0	CLIP3	exonic	synonymous_SNV
RCC_T5--3	chr19:36517154	C	NA	31	0	31	66.161	6.481	0	0	0	31	0	CLIP3	exonic	synonymous_SNV
RCC_T5--4	chr19:36517154	C	A	28	0.143	24	65.833	4.603	4	67.750	4.646	24	4	CLIP3	exonic	synonymous_SNV
RCC_T5--5	chr19:36517154	C	NA	21	0	21	65.190	7.929	0	0	0	21	0	CLIP3	exonic	synonymous_SNV
RCC_T5--6	chr19:36517154	C	NA	23	0	23	63.870	7.143	0	0	0	23	0	CLIP3	exonic	synonymous_SNV
RCC_T5--7	chr19:36517154	C	NA	22	0	22	66.182	8.622	0	0	0	22	0	CLIP3	exonic	synonymous_SNV
RCC_T5--GL	chr19:36517154	C	NA	48	0	48	65.604	6.715	0	0	0	48	0	CLIP3	exonic	synonymous_SNV
RCC_T5--1	chr19:38959916	A	C	29	0.034	28	59.679	10.998	1	38.000	0.000	28	1	RYR1	intronic	NA
RCC_T5--2	chr19:38959916	A	C	30	0.100	27	59.852	10.730	3	34.000	1.732	27	3	RYR1	intronic	NA
RCC_T5--3	chr19:38959916	A	C	24	0.083	22	65.545	7.222	2	34.500	2.121	22	2	RYR1	intronic	NA
RCC_T5--4	chr19:38959916	A	C	16	0.188	12	63.167	5.638	3	36.000	2.646	12	3	RYR1	intronic	NA
RCC_T5--5	chr19:38959916	A	C	20	0.050	19	58.053	13.298	1	33.000	0.000	19	1	RYR1	intronic	NA
RCC_T5--6	chr19:38959916	A	NA	27	0	27	63.074	10.392	0	0	0	27	0	RYR1	intronic	NA
RCC_T5--7	chr19:38959916	A	NA	19	0	19	63.526	5.777	0	0	0	19	0	RYR1	intronic	NA
RCC_T5--GL	chr19:38959916	A	NA	48	0	48	62.854	8.134	0	0	0	48	0	RYR1	intronic	NA
RCC_T5--1	chr19:38968413	A	C	27	0.037	26	58.538	9.496	1	33.000	0.000	26	1	RYR1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:38968413	A	C	25	0.160	20	60.550	6.700	4	38.750	3.096	20	4	RYR1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:38968413	A	C	23	0.043	22	53.727	9.896	1	36.000	0.000	22	1	RYR1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:38968413	A	NA	29	0	29	57.793	10.248	0	0	0	29	0	RYR1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:38968413	A	NA	25	0	25	58.760	8.540	0	0	0	25	0	RYR1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:38968413	A	C	19	0.053	17	57.176	11.075	1	36.000	0.000	17	1	RYR1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:38968413	A	C	23	0.087	21	60.143	8.278	2	35.500	3.536	21	2	RYR1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:38968413	A	NA	34	0	34	56.471	10.922	0	0	0	34	0	RYR1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:38976459	G	C	32	0.062	30	59.300	10.716	2	33.000	0.000	30	2	RYR1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:38976459	G	C	35	0.200	28	63.679	9.105	7	33.000	0.000	28	7	RYR1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:38976459	G	C	30	0.133	26	56.500	14.627	4	35.250	4.500	26	4	RYR1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:38976459	G	C	28	0.107	25	57.200	14.583	3	33.000	0.000	25	3	RYR1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:38976459	G	C	41	0.024	40	56.225	14.300	1	33.000	0.000	40	1	RYR1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:38976459	G	C	22	0.091	20	65.500	5.424	2	33.000	0.000	20	2	RYR1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:38976459	G	C	48	0.062	45	57.867	13.584	3	34.333	2.309	45	3	RYR1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:38976459	G	NA	72	0	72	59.667	13.203	0	0	0	72	0	RYR1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:3918773	A	NA	31	0	31	56.387	13.015	0	0	0	31	0	ATCAY	intronic	NA
RCC_T5--2	chr19:3918773	A	NA	36	0	36	60.722	12.727	0	0	0	36	0	ATCAY	intronic	NA
RCC_T5--3	chr19:3918773	A	NA	42	0	42	55.976	13.131	0	0	0	42	0	ATCAY	intronic	NA
RCC_T5--4	chr19:3918773	A	NA	39	0	39	64.436	8.593	0	0	0	39	0	ATCAY	intronic	NA
RCC_T5--5	chr19:3918773	A	C	46	0.043	44	61.864	9.062	2	36.500	0.707	44	2	ATCAY	intronic	NA
RCC_T5--6	chr19:3918773	A	C	30	0.167	25	57.120	11.308	5	39.600	6.387	25	5	ATCAY	intronic	NA
RCC_T5--7	chr19:3918773	A	NA	25	0	25	62.560	7.800	0	0	0	25	0	ATCAY	intronic	NA
RCC_T5--GL	chr19:3918773	A	NA	50	0	50	60.560	11.450	0	0	0	50	0	ATCAY	intronic	NA
RCC_T5--1	chr19:39369886	A	C	24	0.292	17	51.647	13.043	7	37.000	5.477	17	7	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:39369886	A	C	21	0.143	18	49.333	12.528	3	46.667	4.041	18	3	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:39369886	A	C	18	0.111	16	48.312	12.322	2	34.500	2.121	16	2	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:39369886	A	NA	15	0	15	53.067	12.826	0	0	0	15	0	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:39369886	A	NA	30	0	29	50.621	10.321	0	0	0	29	0	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:39369886	A	NA	10	0	10	49.800	10.369	0	0	0	10	0	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:39369886	A	C	24	0.083	22	51.182	9.960	2	34.500	2.121	22	2	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:39369886	A	NA	40	0	39	52.308	10.322	0	0	0	39	0	SIRT2	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:39877491	A	C	20	0.200	16	51.812	9.297	4	36.250	4.717	16	4	PAF1	intronic	NA
RCC_T5--2	chr19:39877491	A	NA	20	0	20	52.200	7.770	0	0	0	20	0	PAF1	intronic	NA
RCC_T5--3	chr19:39877491	A	C	29	0.103	26	49.731	10.634	3	36.000	3.000	26	3	PAF1	intronic	NA
RCC_T5--4	chr19:39877491	A	NA	33	0	32	52.875	9.853	0	0	0	32	0	PAF1	intronic	NA
RCC_T5--5	chr19:39877491	A	C	26	0.115	23	53.087	10.215	3	42.000	7.937	23	3	PAF1	intronic	NA
RCC_T5--6	chr19:39877491	A	C	20	0.050	17	50.059	9.536	1	46.000	0.000	17	1	PAF1	intronic	NA
RCC_T5--7	chr19:39877491	A	NA	28	0	27	53.704	9.458	0	0	0	27	0	PAF1	intronic	NA
RCC_T5--GL	chr19:39877491	A	NA	36	0	34	53.971	10.602	0	0	0	34	0	PAF1	intronic	NA
RCC_T5--1	chr19:40405818	A	C	33	0.030	32	59.531	12.276	1	36.000	0.000	32	1	FCGBP	intronic	NA
RCC_T5--2	chr19:40405818	A	NA	26	0	26	67.038	6.708	0	0	0	26	0	FCGBP	intronic	NA
RCC_T5--3	chr19:40405818	A	C	29	0.207	23	64.870	7.742	6	33.000	0.000	23	6	FCGBP	intronic	NA
RCC_T5--4	chr19:40405818	A	NA	35	0	34	65.294	8.339	0	0	0	34	0	FCGBP	intronic	NA
RCC_T5--5	chr19:40405818	A	NA	27	0	27	63.296	10.254	0	0	0	27	0	FCGBP	intronic	NA
RCC_T5--6	chr19:40405818	A	NA	23	0	23	64.087	12.402	0	0	0	23	0	FCGBP	intronic	NA
RCC_T5--7	chr19:40405818	A	NA	22	0	22	64.091	10.300	0	0	0	22	0	FCGBP	intronic	NA
RCC_T5--GL	chr19:40405818	A	NA	40	0	40	63.325	11.680	0	0	0	40	0	FCGBP	intronic	NA
RCC_T5--1	chr19:4164608	A	C	19	0.053	18	56.000	11.366	1	33.000	0.000	18	1	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:4164608	A	C	29	0.172	24	57.833	10.941	5	35.400	2.191	24	5	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:4164608	A	C	21	0.048	20	61.500	6.902	1	36.000	0.000	20	1	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:4164608	A	NA	11	0	11	61.909	10.578	0	0	0	11	0	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:4164608	A	C	29	0.034	28	55.214	10.528	1	33.000	0.000	28	1	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:4164608	A	NA	32	0	32	57.531	9.398	0	0	0	32	0	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:4164608	A	C	26	0.038	24	59.792	6.782	1	39.000	0.000	24	1	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:4164608	A	NA	45	0	44	56.182	9.074	0	0	0	44	0	CREB3L3	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:4347750	G	NA	26	0	25	64.720	9.998	0	0	0	25	0	MPND	intronic	NA
RCC_T5--2	chr19:4347750	G	NA	30	0	30	68.267	4.218	0	0	0	30	0	MPND	intronic	NA
RCC_T5--3	chr19:4347750	G	NA	30	0	30	66.567	6.668	0	0	0	30	0	MPND	intronic	NA
RCC_T5--4	chr19:4347750	G	T	30	0.133	26	68.346	3.136	4	68.750	3.775	26	4	MPND	intronic	NA
RCC_T5--5	chr19:4347750	G	NA	15	0	15	67.600	2.530	0	0	0	15	0	MPND	intronic	NA
RCC_T5--6	chr19:4347750	G	T	25	0.080	23	67.739	8.181	2	54.500	21.920	23	2	MPND	intronic	NA
RCC_T5--7	chr19:4347750	G	NA	30	0	30	66.067	6.000	0	0	0	30	0	MPND	intronic	NA
RCC_T5--GL	chr19:4347750	G	NA	37	0	37	67.784	4.036	0	0	0	37	0	MPND	intronic	NA
RCC_T5--1	chr19:44056093	G	A	18	0.222	14	64.429	9.565	4	69.250	3.403	14	4	XRCC1	intronic	NA
RCC_T5--2	chr19:44056093	G	A	12	0.167	10	66.400	3.978	2	69.500	3.536	10	2	XRCC1	intronic	NA
RCC_T5--3	chr19:44056093	G	A	17	0.176	13	66.385	5.440	3	69.000	3.606	13	3	XRCC1	intronic	NA
RCC_T5--4	chr19:44056093	G	A	24	0.042	23	67.609	3.551	1	72.000	0.000	23	1	XRCC1	intronic	NA
RCC_T5--5	chr19:44056093	G	A	25	0.400	15	65.600	9.782	10	69.200	2.781	15	10	XRCC1	intronic	NA
RCC_T5--6	chr19:44056093	G	A	10	0.100	9	67.111	5.036	1	64.000	0.000	9	1	XRCC1	intronic	NA
RCC_T5--7	chr19:44056093	G	A	20	0.300	14	64.214	12.632	6	66.667	7.174	14	6	XRCC1	intronic	NA
RCC_T5--GL	chr19:44056093	G	NA	37	0	37	66.757	8.132	0	0	0	37	0	XRCC1	intronic	NA
RCC_T5--1	chr19:45160981	C	NA	23	0	23	65.087	10.942	0	0	0	23	0	PVR	intronic	NA
RCC_T5--2	chr19:45160981	C	NA	23	0	23	65.130	8.379	0	0	0	23	0	PVR	intronic	NA
RCC_T5--3	chr19:45160981	C	NA	30	0	30	63.300	11.375	0	0	0	30	0	PVR	intronic	NA
RCC_T5--4	chr19:45160981	C	A	23	0.174	19	68.737	3.297	4	67.750	4.349	19	4	PVR	intronic	NA
RCC_T5--5	chr19:45160981	C	NA	31	0	31	66.516	7.606	0	0	0	31	0	PVR	intronic	NA
RCC_T5--6	chr19:45160981	C	NA	20	0	20	66.250	5.428	0	0	0	20	0	PVR	intronic	NA
RCC_T5--7	chr19:45160981	C	NA	19	0	19	67.316	3.917	0	0	0	19	0	PVR	intronic	NA
RCC_T5--GL	chr19:45160981	C	NA	41	0	41	64.927	9.193	0	0	0	41	0	PVR	intronic	NA
RCC_T5--1	chr19:46289938	T	NA	30	0	30	57.233	11.584	0	0	0	30	0	DMWD	exonic	synonymous_SNV
RCC_T5--2	chr19:46289938	T	G	23	0.043	21	59.381	10.443	1	33.000	0.000	21	1	DMWD	exonic	synonymous_SNV
RCC_T5--3	chr19:46289938	T	G	25	0.200	20	59.350	13.007	5	39.200	7.155	20	5	DMWD	exonic	synonymous_SNV
RCC_T5--4	chr19:46289938	T	NA	14	0	14	58.357	12.157	0	0	0	14	0	DMWD	exonic	synonymous_SNV
RCC_T5--5	chr19:46289938	T	G	33	0.061	30	57.733	10.875	2	42.500	13.435	30	2	DMWD	exonic	synonymous_SNV
RCC_T5--6	chr19:46289938	T	NA	14	0	14	56.714	13.269	0	0	0	14	0	DMWD	exonic	synonymous_SNV
RCC_T5--7	chr19:46289938	T	NA	23	0	23	60.783	8.749	0	0	0	23	0	DMWD	exonic	synonymous_SNV
RCC_T5--GL	chr19:46289938	T	NA	54	0	54	60.130	10.217	0	0	0	54	0	DMWD	exonic	synonymous_SNV
RCC_T5--1	chr1:94670892	T	NA	16	0	16	66.250	5.447	0	0	0	16	0	ARHGAP29	intronic	NA
RCC_T5--2	chr1:94670892	T	C	20	0.150	17	67.000	9.327	3	42.667	6.429	17	3	ARHGAP29	intronic	NA
RCC_T5--3	chr1:94670892	T	NA	21	0	21	68.048	8.387	0	0	0	21	0	ARHGAP29	intronic	NA
RCC_T5--4	chr1:94670892	T	NA	34	0	34	69.353	3.356	0	0	0	34	0	ARHGAP29	intronic	NA
RCC_T5--5	chr1:94670892	T	NA	15	0	15	68.333	4.117	0	0	0	15	0	ARHGAP29	intronic	NA
RCC_T5--6	chr1:94670892	T	NA	21	0	21	69.048	3.801	0	0	0	21	0	ARHGAP29	intronic	NA
RCC_T5--7	chr1:94670892	T	NA	15	0	15	66.867	8.105	0	0	0	15	0	ARHGAP29	intronic	NA
RCC_T5--GL	chr1:94670892	T	NA	34	0	34	68.088	4.379	0	0	0	34	0	ARHGAP29	intronic	NA
RCC_T5--1	chr19:47646734	C	NA	31	0	31	64.484	9.003	0	0	0	31	0	SAE1	intronic	NA
RCC_T5--2	chr19:47646734	C	NA	39	0	39	67.359	6.011	0	0	0	39	0	SAE1	intronic	NA
RCC_T5--3	chr19:47646734	C	NA	43	0	43	67.698	6.541	0	0	0	43	0	SAE1	intronic	NA
RCC_T5--4	chr19:47646734	C	NA	40	0	40	67.650	4.510	0	0	0	40	0	SAE1	intronic	NA
RCC_T5--5	chr19:47646734	C	NA	37	0	37	66.703	9.058	0	0	0	37	0	SAE1	intronic	NA
RCC_T5--6	chr19:47646734	C	NA	30	0	30	67.300	8.146	0	0	0	30	0	SAE1	intronic	NA
RCC_T5--7	chr19:47646734	C	T	38	0.158	32	67.406	7.869	6	59.500	13.065	32	6	SAE1	intronic	NA
RCC_T5--GL	chr19:47646734	C	NA	48	0	47	66.489	7.920	0	0	0	47	0	SAE1	intronic	NA
RCC_T5--1	chr19:4769547	T	G	24	0.083	22	46.727	9.677	2	44.000	11.314	22	2	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--2	chr19:4769547	T	G	24	0.042	21	53.476	11.448	1	36.000	0.000	21	1	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--3	chr19:4769547	T	G	27	0.148	23	51.000	12.285	4	35.750	1.893	23	4	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--4	chr19:4769547	T	G	29	0.103	26	49.462	10.838	3	39.667	5.508	26	3	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--5	chr19:4769547	T	NA	23	0	23	51.826	9.485	0	0	0	23	0	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--6	chr19:4769547	T	G	23	0.174	16	46.875	9.229	4	45.000	9.899	16	4	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--7	chr19:4769547	T	G	20	0.050	19	53.263	10.038	1	48.000	0.000	19	1	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--GL	chr19:4769547	T	NA	38	0	38	53.342	12.135	0	0	0	38	0	MIR7-3HG	ncRNA_intronic	NA
RCC_T5--1	chr19:4817522	T	NA	14	0	14	62.286	10.440	0	0	0	14	0	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:4817522	T	G	30	0.033	29	61.207	12.134	1	36.000	0.000	29	1	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:4817522	T	G	18	0.278	13	60.923	13.714	5	38.800	3.834	13	5	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:4817522	T	G	22	0.045	21	60.667	11.142	1	36.000	0.000	21	1	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:4817522	T	NA	14	0	13	66.308	4.990	0	0	0	13	0	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:4817522	T	NA	18	0	18	61.778	12.279	0	0	0	18	0	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:4817522	T	NA	11	0	11	63.182	7.561	0	0	0	11	0	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:4817522	T	NA	34	0	34	61.206	11.562	0	0	0	34	0	TICAM1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:48836560	T	G	34	0.088	31	50.871	11.369	3	37.333	5.132	31	3	TMEM143	exonic	synonymous_SNV
RCC_T5--2	chr19:48836560	T	G	37	0.081	34	58.353	11.903	3	51.667	14.295	34	3	TMEM143	exonic	synonymous_SNV
RCC_T5--3	chr19:48836560	T	G	35	0.057	33	55.030	10.540	2	53.500	6.364	33	2	TMEM143	exonic	synonymous_SNV
RCC_T5--4	chr19:48836560	T	G	39	0.103	35	56.429	11.223	4	39.000	8.124	35	4	TMEM143	exonic	synonymous_SNV
RCC_T5--5	chr19:48836560	T	G	34	0.118	30	56.367	10.483	4	38.500	5.000	30	4	TMEM143	exonic	synonymous_SNV
RCC_T5--6	chr19:48836560	T	G	51	0.176	42	56.024	10.674	9	37.556	5.175	42	9	TMEM143	exonic	synonymous_SNV
RCC_T5--7	chr19:48836560	T	G	35	0.086	32	59.281	9.330	3	40.667	4.041	32	3	TMEM143	exonic	synonymous_SNV
RCC_T5--GL	chr19:48836560	T	NA	53	0	51	58.000	11.533	0	0	0	51	0	TMEM143	exonic	synonymous_SNV
RCC_T5--1	chr19:48879435	A	C	68	0.103	61	57.607	11.553	7	35.857	2.795	61	7	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:48879435	A	C	81	0.086	72	57.875	11.550	7	35.857	1.952	72	7	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:48879435	A	C	67	0.104	59	57.644	12.162	7	39.857	8.454	59	7	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:48879435	A	C	61	0.016	60	56.400	11.649	1	38.000	0.000	60	1	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:48879435	A	C	66	0.076	58	54.810	11.787	5	35.800	2.683	58	5	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:48879435	A	C	49	0.184	40	62.375	9.223	9	36.333	1.414	40	9	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:48879435	A	C	32	0.031	31	56.355	11.053	1	43.000	0.000	31	1	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:48879435	A	NA	76	0	76	58.184	10.769	0	0	0	76	0	SYNGR4	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:48887664	C	NA	19	0	19	60.158	13.941	0	0	0	19	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:48887664	C	NA	20	0	20	63.150	11.250	0	0	0	20	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:48887664	C	NA	15	0	15	60.533	14.412	0	0	0	15	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:48887664	C	T	26	0.154	22	65.364	4.573	4	63.000	2.449	22	4	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:48887664	C	NA	17	0	17	63.412	9.220	0	0	0	17	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:48887664	C	NA	21	0	21	60.238	12.231	0	0	0	21	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:48887664	C	NA	22	0	22	63.636	10.693	0	0	0	22	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:48887664	C	NA	44	0	44	63.568	7.934	0	0	0	44	0	KDELR1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:49962938	T	G	31	0.161	26	56.885	13.756	5	38.800	6.017	26	5	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:49962938	T	G	35	0.029	34	57.441	9.702	1	33.000	0.000	34	1	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:49962938	T	G	41	0.024	38	54.868	14.783	1	39.000	0.000	38	1	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:49962938	T	G	47	0.106	41	58.610	9.615	5	39.000	3.464	41	5	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:49962938	T	G	42	0.048	40	58.875	9.861	2	35.000	2.828	40	2	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:49962938	T	NA	28	0	28	55.571	12.868	0	0	0	28	0	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:49962938	T	G	36	0.083	32	58.688	11.473	3	35.667	2.309	32	3	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:49962938	T	NA	35	0	35	60.029	8.863	0	0	0	35	0	ALDH16A1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:50148557	T	G	24	0.042	23	60.783	8.279	1	39.000	0.000	23	1	SCAF1	intronic	NA
RCC_T5--2	chr19:50148557	T	G	26	0.192	21	62.667	11.195	5	37.000	6.928	21	5	SCAF1	intronic	NA
RCC_T5--3	chr19:50148557	T	G	24	0.083	22	61.864	9.367	2	35.000	2.828	22	2	SCAF1	intronic	NA
RCC_T5--4	chr19:50148557	T	NA	15	0	15	63.400	5.152	0	0	0	15	0	SCAF1	intronic	NA
RCC_T5--5	chr19:50148557	T	G	41	0.024	40	62.225	8.699	1	38.000	0.000	40	1	SCAF1	intronic	NA
RCC_T5--6	chr19:50148557	T	G	25	0.040	24	59.792	10.043	1	33.000	0.000	24	1	SCAF1	intronic	NA
RCC_T5--7	chr19:50148557	T	NA	22	0	22	61.773	8.668	0	0	0	22	0	SCAF1	intronic	NA
RCC_T5--GL	chr19:50148557	T	NA	44	0	44	62.773	8.089	0	0	0	44	0	SCAF1	intronic	NA
RCC_T5--1	chr19:52887146	A	T	35	0.029	17	67.824	3.592	1	65.000	0.000	17	1	ZNF880	exonic	stopgain_SNV
RCC_T5--2	chr19:52887146	A	T	58	0.017	37	68.405	4.038	1	68.000	0.000	37	1	ZNF880	exonic	stopgain_SNV
RCC_T5--3	chr19:52887146	A	T	46	0.022	25	67.400	4.173	1	65.000	0.000	25	1	ZNF880	exonic	stopgain_SNV
RCC_T5--4	chr19:52887146	A	T	38	0.105	22	68.545	4.194	4	67.250	2.217	22	4	ZNF880	exonic	stopgain_SNV
RCC_T5--5	chr19:52887146	A	NA	35	0	20	68.950	3.605	0	0	0	20	0	ZNF880	exonic	stopgain_SNV
RCC_T5--6	chr19:52887146	A	NA	37	0	27	69.556	2.486	0	0	0	27	0	ZNF880	exonic	stopgain_SNV
RCC_T5--7	chr19:52887146	A	T	47	0.043	33	67.727	7.068	2	65.000	4.243	33	2	ZNF880	exonic	stopgain_SNV
RCC_T5--GL	chr19:52887146	A	NA	60	0	37	69.108	2.777	0	0	0	37	0	ZNF880	exonic	stopgain_SNV
RCC_T5--1	chr19:53313436	G	C	39	0.154	33	64.152	8.997	6	60.833	6.178	33	6	ZNF28	intronic	NA
RCC_T5--2	chr19:53313436	G	C	30	0.067	28	64.571	7.970	2	63.500	12.021	28	2	ZNF28	intronic	NA
RCC_T5--3	chr19:53313436	G	C	24	0.292	17	62.412	10.131	7	63.143	11.510	17	7	ZNF28	intronic	NA
RCC_T5--4	chr19:53313436	G	C	31	0.161	26	64.500	9.475	5	70.200	2.683	26	5	ZNF28	intronic	NA
RCC_T5--5	chr19:53313436	G	C	29	0.207	23	67.000	3.729	6	67.500	3.391	23	6	ZNF28	intronic	NA
RCC_T5--6	chr19:53313436	G	NA	26	0	26	60.769	12.291	0	0	0	26	0	ZNF28	intronic	NA
RCC_T5--7	chr19:53313436	G	C	26	0.346	17	65.824	4.334	9	64.000	6.124	17	9	ZNF28	intronic	NA
RCC_T5--GL	chr19:53313436	G	NA	40	0	40	65.950	6.536	0	0	0	40	0	ZNF28	intronic	NA
RCC_T5--1	chr19:54198697	A	C	17	0.235	13	58.462	10.284	4	43.000	7.439	13	4	MIR519B,MIR526B	downstream	NA
RCC_T5--2	chr19:54198697	A	NA	22	0	22	61.773	10.924	0	0	0	22	0	MIR519B,MIR526B	downstream	NA
RCC_T5--3	chr19:54198697	A	C	26	0.038	25	63.600	8.646	1	39.000	0.000	25	1	MIR519B,MIR526B	downstream	NA
RCC_T5--4	chr19:54198697	A	NA	20	0	20	62.150	9.207	0	0	0	20	0	MIR519B,MIR526B	downstream	NA
RCC_T5--5	chr19:54198697	A	C	21	0.048	20	65.750	4.610	1	38.000	0.000	20	1	MIR519B,MIR526B	downstream	NA
RCC_T5--6	chr19:54198697	A	NA	11	0	11	59.364	12.468	0	0	0	11	0	MIR519B,MIR526B	downstream	NA
RCC_T5--7	chr19:54198697	A	NA	13	0	13	60.538	9.306	0	0	0	13	0	MIR519B,MIR526B	downstream	NA
RCC_T5--GL	chr19:54198697	A	NA	53	0	53	62.887	10.019	0	0	0	53	0	MIR519B,MIR526B	downstream	NA
RCC_T5--1	chr19:54416077	C	T	18	0.167	15	63.533	5.423	3	64.667	1.528	15	3	CACNG7	UTR5	NA
RCC_T5--2	chr19:54416077	C	NA	21	0	21	68.762	2.528	0	0	0	21	0	CACNG7	UTR5	NA
RCC_T5--3	chr19:54416077	C	NA	15	0	15	63.533	8.847	0	0	0	15	0	CACNG7	UTR5	NA
RCC_T5--4	chr19:54416077	C	NA	23	0	23	66.087	3.801	0	0	0	23	0	CACNG7	UTR5	NA
RCC_T5--5	chr19:54416077	C	NA	16	0	16	61.938	11.744	0	0	0	16	0	CACNG7	UTR5	NA
RCC_T5--6	chr19:54416077	C	NA	13	0	13	62.385	13.420	0	0	0	13	0	CACNG7	UTR5	NA
RCC_T5--7	chr19:54416077	C	NA	22	0	22	66.364	4.249	0	0	0	22	0	CACNG7	UTR5	NA
RCC_T5--GL	chr19:54416077	C	NA	39	0	39	65.000	8.454	0	0	0	39	0	CACNG7	UTR5	NA
RCC_T5--1	chr19:56204282	A	NA	52	0	50	55.520	13.154	0	0	0	50	0	EPN1	intronic	NA
RCC_T5--2	chr19:56204282	A	C	44	0.114	39	58.410	11.920	5	39.800	8.228	39	5	EPN1	intronic	NA
RCC_T5--3	chr19:56204282	A	C	35	0.057	33	57.697	10.850	2	34.500	2.121	33	2	EPN1	intronic	NA
RCC_T5--4	chr19:56204282	A	C	61	0.049	58	60.690	9.261	3	34.000	1.732	58	3	EPN1	intronic	NA
RCC_T5--5	chr19:56204282	A	C	85	0.024	83	56.145	11.862	2	34.500	2.121	83	2	EPN1	intronic	NA
RCC_T5--6	chr19:56204282	A	C	39	0.231	30	56.567	13.597	9	33.333	1.000	30	9	EPN1	intronic	NA
RCC_T5--7	chr19:56204282	A	C	73	0.014	72	56.639	11.557	1	33.000	0.000	72	1	EPN1	intronic	NA
RCC_T5--GL	chr19:56204282	A	NA	63	0	63	55.349	12.130	0	0	0	63	0	EPN1	intronic	NA
RCC_T5--1	chr19:56369355	C	NA	98	0	98	63.327	9.990	0	0	0	98	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:56369355	C	NA	126	0	126	66.524	6.319	0	0	0	126	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:56369355	C	T	112	0.161	94	66.426	4.086	18	62.722	8.956	94	18	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:56369355	C	NA	132	0	132	67.182	5.057	0	0	0	132	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:56369355	C	NA	91	0	91	65.648	7.943	0	0	0	91	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:56369355	C	NA	75	0	75	65.053	8.008	0	0	0	75	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:56369355	C	NA	109	0	109	65.963	6.901	0	0	0	109	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:56369355	C	NA	143	0	142	65.993	6.518	0	0	0	142	0	NLRP4	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:5696679	A	NA	24	0	24	54.125	13.192	0	0	0	24	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--2	chr19:5696679	A	C	36	0.028	35	61.857	8.510	1	33.000	0.000	35	1	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--3	chr19:5696679	A	C	25	0.160	21	59.000	8.062	4	37.250	5.679	21	4	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--4	chr19:5696679	A	NA	49	0	49	61.816	7.978	0	0	0	49	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--5	chr19:5696679	A	NA	35	0	34	62.176	8.827	0	0	0	34	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--6	chr19:5696679	A	NA	28	0	28	62.929	7.798	0	0	0	28	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--7	chr19:5696679	A	NA	31	0	31	63.581	7.027	0	0	0	31	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--GL	chr19:5696679	A	NA	36	0	36	61.861	9.268	0	0	0	36	0	LONP1(NM_004793:exon12:c.1773+2T>G,NM_001276480:exon12:c.1185+2T>G,NM_001276479:exon13:c.1581+2T>G)	splicing	NA
RCC_T5--1	chr19:5714400	A	NA	23	0	22	51.409	11.529	0	0	0	22	0	LONP1	intronic	NA
RCC_T5--2	chr19:5714400	A	C	18	0.222	13	48.923	10.696	4	43.250	6.131	13	4	LONP1	intronic	NA
RCC_T5--3	chr19:5714400	A	C	16	0.188	12	49.417	9.278	3	34.000	1.732	12	3	LONP1	intronic	NA
RCC_T5--4	chr19:5714400	A	C	24	0.083	20	50.250	10.068	2	33.000	0.000	20	2	LONP1	intronic	NA
RCC_T5--5	chr19:5714400	A	NA	20	0	19	54.474	8.376	0	0	0	19	0	LONP1	intronic	NA
RCC_T5--6	chr19:5714400	A	C	20	0.200	15	53.133	9.970	4	37.500	5.196	15	4	LONP1	intronic	NA
RCC_T5--7	chr19:5714400	A	NA	17	0	16	57.812	8.002	0	0	0	16	0	LONP1	intronic	NA
RCC_T5--GL	chr19:5714400	A	NA	41	0	40	52.925	9.338	0	0	0	40	0	LONP1	intronic	NA
RCC_T5--1	chr19:59028071	T	G	13	0.231	10	58.900	10.806	3	36.667	1.155	10	3	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:59028071	T	NA	13	0	13	59.462	7.709	0	0	0	13	0	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:59028071	T	NA	20	0	20	58.450	8.325	0	0	0	20	0	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:59028071	T	NA	25	0	25	55.800	10.735	0	0	0	25	0	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:59028071	T	G	18	0.167	15	60.800	6.132	3	36.000	0.000	15	3	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:59028071	T	G	21	0.048	20	56.050	12.301	1	43.000	0.000	20	1	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:59028071	T	NA	26	0	26	56.308	9.817	0	0	0	26	0	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:59028071	T	NA	37	0	36	57.361	11.524	0	0	0	36	0	ZBTB45	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:6496257	C	T	12	0.167	10	65.700	3.164	2	66.000	0.000	10	2	TUBB4A	intronic	NA
RCC_T5--2	chr19:6496257	C	T	26	0.115	23	64.348	6.125	3	65.000	2.000	23	3	TUBB4A	intronic	NA
RCC_T5--3	chr19:6496257	C	T	23	0.174	19	65.474	6.204	4	68.500	2.380	19	4	TUBB4A	intronic	NA
RCC_T5--4	chr19:6496257	C	T	19	0.105	17	64.824	8.524	2	49.000	22.627	17	2	TUBB4A	intronic	NA
RCC_T5--5	chr19:6496257	C	T	24	0.125	21	64.095	3.659	3	68.333	2.517	21	3	TUBB4A	intronic	NA
RCC_T5--6	chr19:6496257	C	T	24	0.042	23	60.522	12.098	1	66.000	0.000	23	1	TUBB4A	intronic	NA
RCC_T5--7	chr19:6496257	C	T	15	0.267	11	65.364	4.523	4	67.250	0.957	11	4	TUBB4A	intronic	NA
RCC_T5--GL	chr19:6496257	C	NA	41	0	41	64.780	5.203	0	0	0	41	0	TUBB4A	intronic	NA
RCC_T5--1	chr19:6754535	C	A	21	0.143	18	66.278	4.496	3	52.000	17.349	18	3	SH2D3A	intronic	NA
RCC_T5--2	chr19:6754535	C	NA	13	0	13	65.692	5.851	0	0	0	13	0	SH2D3A	intronic	NA
RCC_T5--3	chr19:6754535	C	NA	12	0	12	66.667	4.942	0	0	0	12	0	SH2D3A	intronic	NA
RCC_T5--4	chr19:6754535	C	NA	16	0	16	66.625	3.222	0	0	0	16	0	SH2D3A	intronic	NA
RCC_T5--5	chr19:6754535	C	NA	24	0	24	67.875	3.982	0	0	0	24	0	SH2D3A	intronic	NA
RCC_T5--6	chr19:6754535	C	NA	14	0	14	69.071	2.759	0	0	0	14	0	SH2D3A	intronic	NA
RCC_T5--7	chr19:6754535	C	NA	13	0	13	68.231	2.976	0	0	0	13	0	SH2D3A	intronic	NA
RCC_T5--GL	chr19:6754535	C	NA	33	0	33	63.485	10.326	0	0	0	33	0	SH2D3A	intronic	NA
RCC_T5--1	chr19:7532019	T	NA	26	0	26	57.731	14.815	0	0	0	26	0	ARHGEF18	intronic	NA
RCC_T5--2	chr19:7532019	T	G	33	0.121	29	61.759	11.163	4	35.500	5.000	29	4	ARHGEF18	intronic	NA
RCC_T5--3	chr19:7532019	T	G	31	0.226	24	59.500	10.718	7	41.143	11.922	24	7	ARHGEF18	intronic	NA
RCC_T5--4	chr19:7532019	T	NA	32	0	32	64.688	8.660	0	0	0	32	0	ARHGEF18	intronic	NA
RCC_T5--5	chr19:7532019	T	G	38	0.079	35	62.029	10.107	3	39.333	5.774	35	3	ARHGEF18	intronic	NA
RCC_T5--6	chr19:7532019	T	G	28	0.143	24	62.208	9.371	4	38.750	6.752	24	4	ARHGEF18	intronic	NA
RCC_T5--7	chr19:7532019	T	G	27	0.037	26	62.385	9.940	1	33.000	0.000	26	1	ARHGEF18	intronic	NA
RCC_T5--GL	chr19:7532019	T	NA	51	0	51	63.725	7.645	0	0	0	51	0	ARHGEF18	intronic	NA
RCC_T5--1	chr19:7593785	T	G	13	0.077	12	57.083	14.087	1	33.000	0.000	12	1	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:7593785	T	G	22	0.091	20	59.300	9.009	2	33.000	0.000	20	2	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:7593785	T	G	23	0.087	21	59.333	10.351	2	33.000	0.000	21	2	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:7593785	T	G	38	0.211	30	60.633	11.100	8	35.375	4.779	30	8	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:7593785	T	G	26	0.115	23	62.261	6.831	3	34.667	2.887	23	3	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:7593785	T	G	26	0.038	25	62.960	7.722	1	33.000	0.000	25	1	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:7593785	T	G	28	0.214	22	58.773	9.237	6	35.333	5.715	22	6	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:7593785	T	NA	34	0	34	60.059	10.910	0	0	0	34	0	MCOLN1	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:7831775	C	NA	20	0	20	67.850	3.937	0	0	0	20	0	CLEC4M	intronic	NA
RCC_T5--2	chr19:7831775	C	NA	15	0	15	68.600	3.542	0	0	0	15	0	CLEC4M	intronic	NA
RCC_T5--3	chr19:7831775	C	NA	18	0	18	66.611	5.271	0	0	0	18	0	CLEC4M	intronic	NA
RCC_T5--4	chr19:7831775	C	NA	21	0	21	67.571	5.240	0	0	0	21	0	CLEC4M	intronic	NA
RCC_T5--5	chr19:7831775	C	NA	25	0	25	66.160	7.209	0	0	0	25	0	CLEC4M	intronic	NA
RCC_T5--6	chr19:7831775	C	NA	19	0	19	68.737	4.641	0	0	0	19	0	CLEC4M	intronic	NA
RCC_T5--7	chr19:7831775	C	T	10	0.200	8	67.500	5.477	2	64.000	9.899	8	2	CLEC4M	intronic	NA
RCC_T5--GL	chr19:7831775	C	NA	38	0	38	66.816	5.751	0	0	0	38	0	CLEC4M	intronic	NA
RCC_T5--1	chr19:7976053	G	NA	27	0	27	63.000	7.411	0	0	0	27	0	MAP2K7	intronic	NA
RCC_T5--2	chr19:7976053	G	NA	21	0	21	58.857	13.181	0	0	0	21	0	MAP2K7	intronic	NA
RCC_T5--3	chr19:7976053	G	NA	27	0	27	60.593	11.712	0	0	0	27	0	MAP2K7	intronic	NA
RCC_T5--4	chr19:7976053	G	A	26	0.192	21	60.810	9.898	5	52.600	15.758	21	5	MAP2K7	intronic	NA
RCC_T5--5	chr19:7976053	G	NA	13	0	13	58.385	9.596	0	0	0	13	0	MAP2K7	intronic	NA
RCC_T5--6	chr19:7976053	G	NA	20	0	20	61.500	8.799	0	0	0	20	0	MAP2K7	intronic	NA
RCC_T5--7	chr19:7976053	G	NA	23	0	23	62.304	6.255	0	0	0	23	0	MAP2K7	intronic	NA
RCC_T5--GL	chr19:7976053	G	NA	34	0	34	63.353	6.980	0	0	0	34	0	MAP2K7	intronic	NA
RCC_T5--1	chr19:7976157	A	C	30	0.133	26	60.615	10.545	4	42.000	10.677	26	4	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:7976157	A	C	37	0.297	26	57.308	11.855	11	39.000	3.821	26	11	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:7976157	A	C	25	0.240	19	62.526	8.127	6	40.667	6.377	19	6	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:7976157	A	C	55	0.073	51	55.529	12.085	4	36.000	2.000	51	4	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:7976157	A	C	32	0.031	31	56.968	13.114	1	33.000	0.000	31	1	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:7976157	A	C	38	0.105	34	60.412	8.539	4	37.250	4.193	34	4	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:7976157	A	C	46	0.130	39	59.692	10.167	6	36.667	3.830	39	6	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:7976157	A	NA	53	0	53	58.453	12.055	0	0	0	53	0	MAP2K7	exonic	nonsynonymous_SNV
RCC_T5--1	chr19:8564168	T	NA	21	0	21	59.238	10.124	0	0	0	21	0	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--2	chr19:8564168	T	G	17	0.118	15	62.533	10.106	2	34.500	2.121	15	2	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--3	chr19:8564168	T	NA	17	0	16	55.938	14.415	0	0	0	16	0	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--4	chr19:8564168	T	G	23	0.087	21	60.619	10.293	2	45.500	13.435	21	2	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--5	chr19:8564168	T	G	17	0.118	15	56.200	9.390	2	36.000	0.000	15	2	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--6	chr19:8564168	T	G	21	0.238	16	55.812	12.571	5	42.600	10.691	16	5	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--7	chr19:8564168	T	G	30	0.033	29	60.379	9.861	1	36.000	0.000	29	1	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr19:8564168	T	NA	39	0	38	58.711	11.566	0	0	0	38	0	PRAM1	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:19664921	A	C	49	0.122	43	53.558	13.560	6	36.333	2.582	43	6	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--2	chr20:19664921	A	C	46	0.109	41	55.439	10.436	5	40.000	7.583	41	5	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--3	chr20:19664921	A	C	48	0.062	44	54.068	12.170	3	37.333	7.506	44	3	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--4	chr20:19664921	A	C	62	0.048	59	56.695	10.323	3	39.667	7.638	59	3	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--5	chr20:19664921	A	C	45	0.156	38	55.263	11.203	7	39.571	4.756	38	7	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--6	chr20:19664921	A	C	52	0.077	48	54.792	12.322	4	35.500	2.887	48	4	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--7	chr20:19664921	A	C	54	0.093	49	56.673	11.470	5	41.000	6.708	49	5	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr20:19664921	A	NA	48	0	48	56.438	10.351	0	0	0	48	0	SLC24A3	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:2779226	T	NA	34	0	34	61.588	9.103	0	0	0	34	0	CPXM1	intronic	NA
RCC_T5--2	chr20:2779226	T	G	30	0.067	28	64.107	9.624	2	33.000	0.000	28	2	CPXM1	intronic	NA
RCC_T5--3	chr20:2779226	T	G	28	0.179	23	64.217	8.355	5	39.400	4.775	23	5	CPXM1	intronic	NA
RCC_T5--4	chr20:2779226	T	NA	30	0	30	60.267	12.230	0	0	0	30	0	CPXM1	intronic	NA
RCC_T5--5	chr20:2779226	T	G	30	0.033	28	59.893	10.837	1	43.000	0.000	28	1	CPXM1	intronic	NA
RCC_T5--6	chr20:2779226	T	G	22	0.045	21	64.905	5.700	1	33.000	0.000	21	1	CPXM1	intronic	NA
RCC_T5--7	chr20:2779226	T	NA	21	0	21	64.714	6.754	0	0	0	21	0	CPXM1	intronic	NA
RCC_T5--GL	chr20:2779226	T	NA	53	0	53	60.415	12.517	0	0	0	53	0	CPXM1	intronic	NA
RCC_T5--1	chr20:279445	A	C	28	0.179	22	58.909	11.555	5	33.800	1.789	22	5	ZCCHC3	UTR3	NA
RCC_T5--2	chr20:279445	A	C	27	0.333	16	57.562	12.649	9	36.667	3.905	16	9	ZCCHC3	UTR3	NA
RCC_T5--3	chr20:279445	A	C	26	0.192	20	50.750	14.279	5	35.800	1.643	20	5	ZCCHC3	UTR3	NA
RCC_T5--4	chr20:279445	A	C	17	0.059	16	56.938	9.441	1	33.000	0.000	16	1	ZCCHC3	UTR3	NA
RCC_T5--5	chr20:279445	A	C	18	0.056	17	51.412	13.616	1	37.000	0.000	17	1	ZCCHC3	UTR3	NA
RCC_T5--6	chr20:279445	A	C	17	0.353	10	60.500	11.375	6	39.500	8.167	10	6	ZCCHC3	UTR3	NA
RCC_T5--7	chr20:279445	A	C	19	0.053	18	56.500	13.241	1	36.000	0.000	18	1	ZCCHC3	UTR3	NA
RCC_T5--GL	chr20:279445	A	NA	35	0	34	55.765	10.857	0	0	0	34	0	ZCCHC3	UTR3	NA
RCC_T5--1	chr20:30418752	T	G	21	0.095	19	60.158	7.544	2	39.000	0.000	19	2	MYLK2	intronic	NA
RCC_T5--2	chr20:30418752	T	NA	20	0	20	56.950	7.258	0	0	0	20	0	MYLK2	intronic	NA
RCC_T5--3	chr20:30418752	T	NA	25	0	25	58.400	9.188	0	0	0	25	0	MYLK2	intronic	NA
RCC_T5--4	chr20:30418752	T	NA	31	0	31	57.484	10.917	0	0	0	31	0	MYLK2	intronic	NA
RCC_T5--5	chr20:30418752	T	G	29	0.069	27	56.889	10.811	2	36.500	0.707	27	2	MYLK2	intronic	NA
RCC_T5--6	chr20:30418752	T	G	21	0.190	17	63.824	7.161	4	36.000	2.449	17	4	MYLK2	intronic	NA
RCC_T5--7	chr20:30418752	T	G	38	0.026	37	58.730	10.153	1	36.000	0.000	37	1	MYLK2	intronic	NA
RCC_T5--GL	chr20:30418752	T	NA	40	0	40	59.725	8.177	0	0	0	40	0	MYLK2	intronic	NA
RCC_T5--1	chr20:31671067	T	NA	17	0	17	45.824	8.784	0	0	0	17	0	BPIFB4	intronic	NA
RCC_T5--2	chr20:31671067	T	G	23	0.130	20	55.200	9.650	3	42.667	8.505	20	3	BPIFB4	intronic	NA
RCC_T5--3	chr20:31671067	T	G	12	0.083	11	47.091	6.848	1	33.000	0.000	11	1	BPIFB4	intronic	NA
RCC_T5--4	chr20:31671067	T	NA	34	0	34	52.088	7.948	0	0	0	34	0	BPIFB4	intronic	NA
RCC_T5--5	chr20:31671067	T	G	28	0.179	23	51.261	5.029	5	38.800	3.834	23	5	BPIFB4	intronic	NA
RCC_T5--6	chr20:31671067	T	G	20	0.100	18	49.278	9.486	2	36.000	0.000	18	2	BPIFB4	intronic	NA
RCC_T5--7	chr20:31671067	T	NA	28	0	28	49.929	10.495	0	0	0	28	0	BPIFB4	intronic	NA
RCC_T5--GL	chr20:31671067	T	NA	39	0	38	48.421	7.607	0	0	0	38	0	BPIFB4	intronic	NA
RCC_T5--1	chr20:3209214	T	G	21	0.048	20	56.250	13.114	1	38.000	0.000	20	1	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--2	chr20:3209214	T	NA	24	0	24	58.417	10.782	0	0	0	24	0	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--3	chr20:3209214	T	G	10	0.300	7	60.571	9.981	3	36.667	0.577	7	3	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--4	chr20:3209214	T	NA	24	0	24	60.292	11.153	0	0	0	24	0	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--5	chr20:3209214	T	NA	32	0	32	58.375	11.178	0	0	0	32	0	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--6	chr20:3209214	T	NA	17	0	17	55.294	11.661	0	0	0	17	0	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--7	chr20:3209214	T	G	27	0.074	25	57.560	9.483	2	37.500	2.121	25	2	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--GL	chr20:3209214	T	NA	35	0	35	55.086	12.752	0	0	0	35	0	SLC4A11	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:33583254	T	G	20	0.150	17	57.529	11.114	3	37.333	0.577	17	3	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--2	chr20:33583254	T	G	22	0.136	19	57.526	8.784	3	35.667	2.309	19	3	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--3	chr20:33583254	T	G	23	0.217	18	56.944	11.269	5	39.800	9.960	18	5	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--4	chr20:33583254	T	G	19	0.105	17	55.235	11.492	2	33.000	0.000	17	2	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--5	chr20:33583254	T	G	29	0.103	26	51.154	12.115	3	34.333	2.309	26	3	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--6	chr20:33583254	T	G	20	0.050	19	55.526	11.418	1	37.000	0.000	19	1	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--7	chr20:33583254	T	G	26	0.077	24	54.042	10.378	2	43.500	10.607	24	2	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr20:33583254	T	NA	36	0	36	53.806	10.644	0	0	0	36	0	MYH7B	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:34147989	A	C	41	0.073	37	58.297	10.099	3	34.333	2.309	37	3	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--2	chr20:34147989	A	C	31	0.065	29	61.310	11.072	2	34.500	2.121	29	2	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--3	chr20:34147989	A	NA	33	0	33	58.758	11.336	0	0	0	33	0	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--4	chr20:34147989	A	C	39	0.026	38	60.079	11.182	1	33.000	0.000	38	1	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--5	chr20:34147989	A	NA	33	0	33	56.697	13.251	0	0	0	33	0	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--6	chr20:34147989	A	C	33	0.212	25	54.120	14.695	7	34.857	1.773	25	7	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--7	chr20:34147989	A	NA	32	0	32	58.812	8.213	0	0	0	32	0	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--GL	chr20:34147989	A	NA	38	0	38	58.368	9.931	0	0	0	38	0	ERGIC3(dist=2584),SPAG4(dist=55820)	intergenic	NA
RCC_T5--1	chr20:45812085	A	C	25	0.040	24	55.833	10.111	1	37.000	0.000	24	1	EYA2	intronic	NA
RCC_T5--2	chr20:45812085	A	C	21	0.238	16	57.125	11.026	5	37.400	1.140	16	5	EYA2	intronic	NA
RCC_T5--3	chr20:45812085	A	C	17	0.176	14	55.786	12.027	3	37.000	3.464	14	3	EYA2	intronic	NA
RCC_T5--4	chr20:45812085	A	C	24	0.042	23	58.087	9.793	1	36.000	0.000	23	1	EYA2	intronic	NA
RCC_T5--5	chr20:45812085	A	C	23	0.043	22	57.318	10.467	1	39.000	0.000	22	1	EYA2	intronic	NA
RCC_T5--6	chr20:45812085	A	C	28	0.036	26	51.538	10.771	1	33.000	0.000	26	1	EYA2	intronic	NA
RCC_T5--7	chr20:45812085	A	NA	22	0	22	55.682	10.965	0	0	0	22	0	EYA2	intronic	NA
RCC_T5--GL	chr20:45812085	A	NA	34	0	34	57.676	9.341	0	0	0	34	0	EYA2	intronic	NA
RCC_T5--1	chr20:47307504	G	NA	38	0	38	63.053	7.870	0	0	0	38	0	PREX1	exonic	synonymous_SNV
RCC_T5--2	chr20:47307504	G	NA	33	0	33	62.030	7.691	0	0	0	33	0	PREX1	exonic	synonymous_SNV
RCC_T5--3	chr20:47307504	G	NA	32	0	32	58.188	13.128	0	0	0	32	0	PREX1	exonic	synonymous_SNV
RCC_T5--4	chr20:47307504	G	A	37	0.108	33	64.394	9.483	4	62.000	4.690	33	4	PREX1	exonic	synonymous_SNV
RCC_T5--5	chr20:47307504	G	NA	44	0	44	58.682	11.896	0	0	0	44	0	PREX1	exonic	synonymous_SNV
RCC_T5--6	chr20:47307504	G	NA	44	0	44	59.705	11.665	0	0	0	44	0	PREX1	exonic	synonymous_SNV
RCC_T5--7	chr20:47307504	G	NA	38	0	38	62.184	10.575	0	0	0	38	0	PREX1	exonic	synonymous_SNV
RCC_T5--GL	chr20:47307504	G	NA	45	0	45	64.333	6.809	0	0	0	45	0	PREX1	exonic	synonymous_SNV
RCC_T5--1	chr20:47591397	A	C	16	0.125	14	63.357	7.782	2	33.000	0.000	14	2	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--2	chr20:47591397	A	C	33	0.061	31	55.032	13.353	2	38.000	0.000	31	2	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--3	chr20:47591397	A	C	33	0.212	26	55.615	13.706	7	35.429	3.047	26	7	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--4	chr20:47591397	A	C	18	0.056	17	58.706	13.104	1	49.000	0.000	17	1	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--5	chr20:47591397	A	C	27	0.185	22	56.091	12.177	5	36.800	5.762	22	5	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--6	chr20:47591397	A	NA	26	0	26	50.308	12.145	0	0	0	26	0	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--7	chr20:47591397	A	C	19	0.053	18	59.333	12.146	1	33.000	0.000	18	1	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr20:47591397	A	NA	39	0	39	60.538	11.135	0	0	0	39	0	ARFGEF2	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:56089881	T	G	22	0.091	20	68.400	4.070	2	65.000	4.243	20	2	CTCFL	intronic	NA
RCC_T5--2	chr20:56089881	T	G	16	0.250	12	65.917	4.441	4	57.250	16.358	12	4	CTCFL	intronic	NA
RCC_T5--3	chr20:56089881	T	G	25	0.080	23	62.174	10.404	2	68.000	0.000	23	2	CTCFL	intronic	NA
RCC_T5--4	chr20:56089881	T	G	34	0.088	31	64.742	10.991	3	54.333	18.475	31	3	CTCFL	intronic	NA
RCC_T5--5	chr20:56089881	T	G	20	0.050	19	66.842	6.423	1	68.000	0.000	19	1	CTCFL	intronic	NA
RCC_T5--6	chr20:56089881	T	G	27	0.074	25	67.680	4.643	2	68.000	0.000	25	2	CTCFL	intronic	NA
RCC_T5--7	chr20:56089881	T	G	22	0.091	20	67.100	6.164	2	68.000	0.000	20	2	CTCFL	intronic	NA
RCC_T5--GL	chr20:56089881	T	NA	35	0	35	66.457	5.746	0	0	0	35	0	CTCFL	intronic	NA
RCC_T5--1	chr20:57769030	A	C	38	0.079	34	60.412	11.333	3	34.000	1.732	34	3	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--2	chr20:57769030	A	C	45	0.067	42	58.190	9.620	3	34.333	2.309	42	3	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--3	chr20:57769030	A	C	43	0.186	35	59.257	9.344	8	35.875	2.031	35	8	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--4	chr20:57769030	A	C	42	0.024	41	57.854	10.662	1	38.000	0.000	41	1	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--5	chr20:57769030	A	C	50	0.020	49	57.633	10.519	1	33.000	0.000	49	1	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--6	chr20:57769030	A	C	29	0.138	25	59.160	10.566	4	34.500	1.732	25	4	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--7	chr20:57769030	A	NA	42	0	42	60.905	9.730	0	0	0	42	0	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--GL	chr20:57769030	A	NA	46	0	45	60.978	9.189	0	0	0	45	0	ZNF831	exonic	nonsynonymous_SNV
RCC_T5--1	chr20:58348272	G	NA	58	0	58	66.034	4.638	0	0	0	58	0	PHACTR3	intronic	NA
RCC_T5--2	chr20:58348272	G	NA	46	0	46	65.370	8.306	0	0	0	46	0	PHACTR3	intronic	NA
RCC_T5--3	chr20:58348272	G	NA	59	0	59	65.475	7.796	0	0	0	59	0	PHACTR3	intronic	NA
RCC_T5--4	chr20:58348272	G	A	67	0.134	58	64.397	7.943	9	66.333	4.583	58	9	PHACTR3	intronic	NA
RCC_T5--5	chr20:58348272	G	NA	64	0	64	66.344	6.407	0	0	0	64	0	PHACTR3	intronic	NA
RCC_T5--6	chr20:58348272	G	NA	48	0	48	65.229	8.511	0	0	0	48	0	PHACTR3	intronic	NA
RCC_T5--7	chr20:58348272	G	NA	66	0	66	66.621	6.012	0	0	0	66	0	PHACTR3	intronic	NA
RCC_T5--GL	chr20:58348272	G	NA	72	0	72	64.750	8.070	0	0	0	72	0	PHACTR3	intronic	NA
RCC_T5--1	chr2:100006061	G	A	33	0.030	31	68.355	3.115	1	61.000	0.000	31	1	EIF5B	intronic	NA
RCC_T5--2	chr2:100006061	G	A	32	0.094	28	66.929	8.092	3	64.000	3.464	28	3	EIF5B	intronic	NA
RCC_T5--3	chr2:100006061	G	A	40	0.075	36	68.917	3.358	3	63.667	1.528	36	3	EIF5B	intronic	NA
RCC_T5--4	chr2:100006061	G	NA	41	0	41	69.220	4.174	0	0	0	41	0	EIF5B	intronic	NA
RCC_T5--5	chr2:100006061	G	A	31	0.194	23	68.261	4.372	6	62.500	2.811	23	6	EIF5B	intronic	NA
RCC_T5--6	chr2:100006061	G	A	38	0.053	35	67.200	6.263	2	62.500	0.707	35	2	EIF5B	intronic	NA
RCC_T5--7	chr2:100006061	G	A	22	0.045	21	68.095	2.663	1	65.000	0.000	21	1	EIF5B	intronic	NA
RCC_T5--GL	chr2:100006061	G	NA	43	0	43	70.605	1.620	0	0	0	43	0	EIF5B	intronic	NA
RCC_T5--1	chr2:102855586	T	G	44	0.159	37	51.243	11.112	7	37.000	3.215	37	7	IL1RL2	intronic	NA
RCC_T5--2	chr2:102855586	T	G	30	0.200	24	56.583	9.815	6	39.667	5.279	24	6	IL1RL2	intronic	NA
RCC_T5--3	chr2:102855586	T	G	51	0.235	39	54.897	9.428	12	37.917	4.926	39	12	IL1RL2	intronic	NA
RCC_T5--4	chr2:102855586	T	G	48	0.083	44	56.068	10.215	4	38.000	5.033	44	4	IL1RL2	intronic	NA
RCC_T5--5	chr2:102855586	T	G	36	0.056	34	57.794	8.831	2	46.000	12.728	34	2	IL1RL2	intronic	NA
RCC_T5--6	chr2:102855586	T	G	40	0.075	37	54.892	10.674	3	36.333	3.055	37	3	IL1RL2	intronic	NA
RCC_T5--7	chr2:102855586	T	G	43	0.047	40	60.625	7.791	2	38.000	1.414	40	2	IL1RL2	intronic	NA
RCC_T5--GL	chr2:102855586	T	NA	36	0	36	57.694	10.051	0	0	0	36	0	IL1RL2	intronic	NA
RCC_T5--1	chr2:10924402	T	NA	41	0	41	66.317	8.716	0	0	0	41	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:10924402	T	NA	59	0	59	67.068	5.644	0	0	0	59	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:10924402	T	NA	54	0	54	66.333	5.136	0	0	0	54	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:10924402	T	A	36	0.111	32	68.469	6.730	4	67.500	7.141	32	4	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:10924402	T	NA	43	0	43	66.093	3.921	0	0	0	43	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:10924402	T	NA	60	0	59	66.797	5.238	0	0	0	59	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:10924402	T	NA	58	0	58	66.724	7.393	0	0	0	58	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:10924402	T	NA	70	0	70	66.671	7.326	0	0	0	70	0	PDIA6	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:113304734	G	NA	71	0	71	62.803	10.029	0	0	0	71	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:113304734	G	NA	82	0	82	65.866	6.883	0	0	0	82	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:113304734	G	NA	80	0	79	65.278	6.972	0	0	0	79	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:113304734	G	NA	94	0	94	67.309	5.603	0	0	0	94	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:113304734	G	NA	65	0	65	66.000	6.876	0	0	0	65	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:113304734	G	A	80	0.138	69	65.232	7.416	11	66.636	3.828	69	11	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:113304734	G	NA	74	0	74	66.770	4.928	0	0	0	74	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:113304734	G	NA	129	0	129	65.791	7.161	0	0	0	129	0	POLR1B	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:113480600	T	G	40	0.075	37	59.676	10.146	3	35.333	2.082	37	3	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--2	chr2:113480600	T	G	26	0.231	20	60.750	10.632	6	37.333	4.457	20	6	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--3	chr2:113480600	T	NA	12	0	12	51.917	12.191	0	0	0	12	0	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--4	chr2:113480600	T	G	21	0.048	20	57.600	9.811	1	49.000	0.000	20	1	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--5	chr2:113480600	T	NA	25	0	25	55.640	12.003	0	0	0	25	0	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--6	chr2:113480600	T	G	22	0.045	21	62.524	7.808	1	33.000	0.000	21	1	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--7	chr2:113480600	T	G	25	0.080	23	54.217	11.237	2	34.500	2.121	23	2	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--GL	chr2:113480600	T	NA	43	0	41	61.878	9.558	0	0	0	41	0	SLC20A1(dist=59200),CKAP2L(dist=14844)	intergenic	NA
RCC_T5--1	chr21:37581060	T	G	32	0.031	31	55.710	12.846	1	33.000	0.000	31	1	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--2	chr21:37581060	T	G	38	0.026	36	56.083	12.537	1	37.000	0.000	36	1	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--3	chr21:37581060	T	G	30	0.167	25	59.880	8.762	5	38.800	6.797	25	5	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--4	chr21:37581060	T	NA	43	0	43	61.744	7.823	0	0	0	43	0	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--5	chr21:37581060	T	NA	27	0	27	53.926	11.170	0	0	0	27	0	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--6	chr21:37581060	T	G	32	0.125	28	57.893	11.403	4	37.500	1.000	28	4	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--7	chr21:37581060	T	G	32	0.062	30	60.400	8.173	2	46.000	14.142	30	2	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr21:37581060	T	NA	45	0	45	59.111	11.175	0	0	0	45	0	DOPEY2	exonic	nonsynonymous_SNV
RCC_T5--1	chr21:47558716	G	NA	21	0	20	62.750	9.369	0	0	0	20	0	FTCD	intronic	NA
RCC_T5--2	chr21:47558716	G	NA	39	0	39	66.231	6.599	0	0	0	39	0	FTCD	intronic	NA
RCC_T5--3	chr21:47558716	G	NA	23	0	23	63.304	10.346	0	0	0	23	0	FTCD	intronic	NA
RCC_T5--4	chr21:47558716	G	T	25	0.160	21	66.000	5.604	4	65.750	6.131	21	4	FTCD	intronic	NA
RCC_T5--5	chr21:47558716	G	NA	36	0	36	65.278	5.501	0	0	0	36	0	FTCD	intronic	NA
RCC_T5--6	chr21:47558716	G	NA	23	0	23	63.304	8.221	0	0	0	23	0	FTCD	intronic	NA
RCC_T5--7	chr21:47558716	G	NA	26	0	26	66.269	3.459	0	0	0	26	0	FTCD	intronic	NA
RCC_T5--GL	chr21:47558716	G	NA	35	0	35	65.829	6.985	0	0	0	35	0	FTCD	intronic	NA
RCC_T5--1	chr2:155307077	C	A	48	0.146	41	54.000	13.950	7	43.714	12.284	41	7	GALNT13	UTR3	NA
RCC_T5--2	chr2:155307077	C	A	58	0.190	47	53.872	12.414	11	37.273	6.198	47	11	GALNT13	UTR3	NA
RCC_T5--3	chr2:155307077	C	A	61	0.016	60	54.400	13.225	1	49.000	0.000	60	1	GALNT13	UTR3	NA
RCC_T5--4	chr2:155307077	C	A	75	0.027	73	58.247	11.666	2	35.500	3.536	73	2	GALNT13	UTR3	NA
RCC_T5--5	chr2:155307077	C	A	59	0.034	57	55.228	11.916	2	41.000	11.314	57	2	GALNT13	UTR3	NA
RCC_T5--6	chr2:155307077	C	A	67	0.090	60	51.083	12.176	6	34.000	2.449	60	6	GALNT13	UTR3	NA
RCC_T5--7	chr2:155307077	C	A	61	0.016	60	57.483	11.849	1	39.000	0.000	60	1	GALNT13	UTR3	NA
RCC_T5--GL	chr2:155307077	C	NA	53	0	53	58.340	11.312	0	0	0	53	0	GALNT13	UTR3	NA
RCC_T5--1	chr2:159389818	T	C	49	0.184	40	66.175	5.098	9	68.333	3.674	40	9	PKP4	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:159389818	T	C	46	0.087	42	65.071	7.253	4	59.000	17.378	42	4	PKP4	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:159389818	T	C	45	0.156	38	66.079	4.956	7	68.286	2.928	38	7	PKP4	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:159389818	T	C	59	0.119	52	65.519	7.237	7	69.714	2.984	52	7	PKP4	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:159389818	T	C	38	0.237	29	66.448	6.127	9	67.000	4.093	29	9	PKP4	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:159389818	T	C	50	0.060	47	64.340	7.399	3	69.667	3.215	47	3	PKP4	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:159389818	T	C	44	0.227	34	66.176	5.518	10	68.700	2.263	34	10	PKP4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:159389818	T	NA	54	0	54	66.370	5.867	0	0	0	54	0	PKP4	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:162762402	G	T	206	0.218	161	67.205	5.450	45	66.822	5.561	161	45	SLC4A10	intronic	NA
RCC_T5--2	chr2:162762402	G	T	177	0.141	152	68.428	4.341	25	66.720	7.068	152	25	SLC4A10	intronic	NA
RCC_T5--3	chr2:162762402	G	T	211	0.171	175	67.566	5.448	36	67.389	4.390	175	36	SLC4A10	intronic	NA
RCC_T5--4	chr2:162762402	G	T	250	0.172	206	68.762	3.834	43	67.837	5.533	206	43	SLC4A10	intronic	NA
RCC_T5--5	chr2:162762402	G	T	214	0.192	173	67.040	6.714	41	66.902	6.774	173	41	SLC4A10	intronic	NA
RCC_T5--6	chr2:162762402	G	T	222	0.099	200	67.680	5.656	22	67.591	2.631	200	22	SLC4A10	intronic	NA
RCC_T5--7	chr2:162762402	G	T	211	0.299	148	67.932	5.790	63	67.429	5.327	148	63	SLC4A10	intronic	NA
RCC_T5--GL	chr2:162762402	G	NA	254	0	254	67.606	5.682	0	0	0	254	0	SLC4A10	intronic	NA
RCC_T5--1	chr2:163029264	C	A	34	0.029	33	63.970	7.406	1	48.000	0.000	33	1	FAP	intronic	NA
RCC_T5--2	chr2:163029264	C	NA	44	0	44	67.409	4.702	0	0	0	44	0	FAP	intronic	NA
RCC_T5--3	chr2:163029264	C	NA	41	0	41	63.512	11.598	0	0	0	41	0	FAP	intronic	NA
RCC_T5--4	chr2:163029264	C	A	42	0.119	37	67.892	4.228	5	56.000	16.837	37	5	FAP	intronic	NA
RCC_T5--5	chr2:163029264	C	NA	34	0	34	66.029	4.246	0	0	0	34	0	FAP	intronic	NA
RCC_T5--6	chr2:163029264	C	NA	44	0	44	68.023	5.272	0	0	0	44	0	FAP	intronic	NA
RCC_T5--7	chr2:163029264	C	NA	39	0	39	68.231	5.402	0	0	0	39	0	FAP	intronic	NA
RCC_T5--GL	chr2:163029264	C	NA	58	0	58	66.966	6.926	0	0	0	58	0	FAP	intronic	NA
RCC_T5--1	chr2:167313337	T	G	25	0.040	24	67.708	5.457	1	39.000	0.000	24	1	SCN7A	intronic	NA
RCC_T5--2	chr2:167313337	T	G	29	0.034	28	67.571	4.880	1	66.000	0.000	28	1	SCN7A	intronic	NA
RCC_T5--3	chr2:167313337	T	G	24	0.208	19	69.421	3.006	5	58.400	12.740	19	5	SCN7A	intronic	NA
RCC_T5--4	chr2:167313337	T	G	35	0.200	28	67.500	4.087	7	58.429	8.734	28	7	SCN7A	intronic	NA
RCC_T5--5	chr2:167313337	T	G	15	0.133	13	67.692	2.926	2	47.500	10.607	13	2	SCN7A	intronic	NA
RCC_T5--6	chr2:167313337	T	G	31	0.226	24	67.500	6.672	7	61.714	4.786	24	7	SCN7A	intronic	NA
RCC_T5--7	chr2:167313337	T	G	28	0.071	26	68.385	3.383	2	61.500	2.121	26	2	SCN7A	intronic	NA
RCC_T5--GL	chr2:167313337	T	NA	36	0	36	68.861	3.766	0	0	0	36	0	SCN7A	intronic	NA
RCC_T5--1	chr2:171634348	A	T	48	0.083	12	67.833	3.243	4	62.500	1.000	12	4	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--2	chr2:171634348	A	T	49	0.082	26	69.308	3.968	4	62.000	4.243	26	4	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--3	chr2:171634348	A	T	55	0.055	29	68.897	3.802	3	63.000	1.732	29	3	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--4	chr2:171634348	A	T	82	0.049	46	69.587	3.059	4	64.250	2.872	46	4	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--5	chr2:171634348	A	T	54	0.019	35	68.914	3.052	1	62.000	0.000	35	1	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--6	chr2:171634348	A	T	73	0.014	38	68.632	5.164	1	62.000	0.000	38	1	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--7	chr2:171634348	A	NA	44	0	20	68.200	4.420	0	0	0	20	0	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--GL	chr2:171634348	A	NA	84	0	51	69.196	4.252	0	0	0	51	0	AC007405.4(dist=7072),ERICH2(dist=5948)	intergenic	NA
RCC_T5--1	chr2:182360634	T	C	189	0.180	155	66.387	6.913	34	67.824	3.433	155	34	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:182360634	T	C	159	0.119	140	68.293	3.893	19	65.684	9.511	140	19	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:182360634	T	C	167	0.198	133	67.624	5.825	33	68.545	3.615	133	33	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:182360634	T	C	246	0.175	203	68.788	4.327	43	69.721	3.018	203	43	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:182360634	T	C	208	0.207	165	68.358	4.793	43	68.372	4.299	165	43	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:182360634	T	C	221	0.167	184	68.250	4.022	37	68.000	3.249	184	37	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:182360634	T	C	255	0.306	177	68.435	4.544	78	68.115	5.066	177	78	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:182360634	T	NA	201	0	201	67.925	5.392	0	0	0	201	0	ITGA4	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:189968809	A	T	54	0.056	29	65.621	7.262	3	64.000	1.732	29	3	COL5A2	intronic	NA
RCC_T5--2	chr2:189968809	A	T	31	0.065	18	67.333	3.597	2	65.500	0.707	18	2	COL5A2	intronic	NA
RCC_T5--3	chr2:189968809	A	T	52	0.038	24	68.000	4.606	2	65.000	0.000	24	2	COL5A2	intronic	NA
RCC_T5--4	chr2:189968809	A	T	50	0.020	23	66.783	5.877	1	65.000	0.000	23	1	COL5A2	intronic	NA
RCC_T5--5	chr2:189968809	A	T	54	0.056	31	66.387	7.535	3	61.333	3.055	31	3	COL5A2	intronic	NA
RCC_T5--6	chr2:189968809	A	T	59	0.051	28	66.214	5.679	3	65.000	1.000	28	3	COL5A2	intronic	NA
RCC_T5--7	chr2:189968809	A	T	29	0.103	11	68.364	2.618	3	64.000	2.646	11	3	COL5A2	intronic	NA
RCC_T5--GL	chr2:189968809	A	NA	70	0	38	67.368	6.732	0	0	0	38	0	COL5A2	intronic	NA
RCC_T5--1	chr2:201440949	T	C	30	0.167	19	61.105	11.239	5	67.000	1.414	19	5	SGOL2	intronic	NA
RCC_T5--2	chr2:201440949	T	C	38	0.079	24	65.083	8.910	3	65.000	0.000	24	3	SGOL2	intronic	NA
RCC_T5--3	chr2:201440949	T	C	24	0.208	15	62.200	12.451	5	59.800	12.377	15	5	SGOL2	intronic	NA
RCC_T5--4	chr2:201440949	T	C	39	0.051	30	63.633	8.377	2	67.000	1.414	30	2	SGOL2	intronic	NA
RCC_T5--5	chr2:201440949	T	C	38	0.026	26	67.231	4.421	1	62.000	0.000	26	1	SGOL2	intronic	NA
RCC_T5--6	chr2:201440949	T	C	42	0.071	29	64.793	10.150	3	66.000	1.732	29	3	SGOL2	intronic	NA
RCC_T5--7	chr2:201440949	T	NA	24	0	16	66.000	4.844	0	0	0	16	0	SGOL2	intronic	NA
RCC_T5--GL	chr2:201440949	T	NA	47	0	37	64.946	7.483	0	0	0	37	0	SGOL2	intronic	NA
RCC_T5--1	chr2:21360907	T	C	385	0.216	302	66.937	6.487	83	66.373	7.548	302	83	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--2	chr2:21360907	T	C	394	0.157	332	68.461	4.803	62	68.887	3.859	332	62	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--3	chr2:21360907	T	C	477	0.182	390	67.944	5.368	87	66.931	7.749	390	87	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--4	chr2:21360907	T	C	482	0.124	422	68.578	4.660	60	68.983	4.176	422	60	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--5	chr2:21360907	T	C	436	0.200	349	67.966	5.379	87	68.253	5.106	349	87	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--6	chr2:21360907	T	C	449	0.167	373	67.584	6.788	75	66.587	8.256	373	75	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--7	chr2:21360907	T	C	436	0.284	312	68.638	3.926	124	68.806	4.788	312	124	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--GL	chr2:21360907	T	NA	464	0	464	68.554	4.824	0	0	0	464	0	APOB(dist=93962),AC018742.1(dist=549399)	intergenic	NA
RCC_T5--1	chr22:18912538	T	G	28	0.179	23	54.609	13.714	5	41.200	11.756	23	5	PRODH	intronic	NA
RCC_T5--2	chr22:18912538	T	G	36	0.167	30	53.700	12.736	6	42.000	8.832	30	6	PRODH	intronic	NA
RCC_T5--3	chr22:18912538	T	G	37	0.162	31	54.677	12.087	6	37.000	6.197	31	6	PRODH	intronic	NA
RCC_T5--4	chr22:18912538	T	G	38	0.079	35	57.029	10.720	3	39.333	5.508	35	3	PRODH	intronic	NA
RCC_T5--5	chr22:18912538	T	G	45	0.044	43	53.488	10.354	2	44.500	16.263	43	2	PRODH	intronic	NA
RCC_T5--6	chr22:18912538	T	G	39	0.128	33	53.697	12.834	5	37.000	3.674	33	5	PRODH	intronic	NA
RCC_T5--7	chr22:18912538	T	G	57	0.053	51	57.314	10.961	3	38.000	6.245	51	3	PRODH	intronic	NA
RCC_T5--GL	chr22:18912538	T	NA	48	0	48	55.562	11.941	0	0	0	48	0	PRODH	intronic	NA
RCC_T5--1	chr2:219221933	T	G	19	0.053	18	61.500	10.512	1	36.000	0.000	18	1	CATIP	intronic	NA
RCC_T5--2	chr2:219221933	T	G	20	0.050	19	67.316	9.298	1	51.000	0.000	19	1	CATIP	intronic	NA
RCC_T5--3	chr2:219221933	T	G	18	0.056	17	63.353	13.379	1	33.000	0.000	17	1	CATIP	intronic	NA
RCC_T5--4	chr2:219221933	T	NA	13	0	13	63.538	10.381	0	0	0	13	0	CATIP	intronic	NA
RCC_T5--5	chr2:219221933	T	G	25	0.200	20	67.350	8.443	5	36.200	5.215	20	5	CATIP	intronic	NA
RCC_T5--6	chr2:219221933	T	NA	21	0	21	58.238	14.526	0	0	0	21	0	CATIP	intronic	NA
RCC_T5--7	chr2:219221933	T	G	28	0.036	26	62.769	10.934	1	45.000	0.000	26	1	CATIP	intronic	NA
RCC_T5--GL	chr2:219221933	T	NA	41	0	41	63.610	10.599	0	0	0	41	0	CATIP	intronic	NA
RCC_T5--1	chr2:219231771	G	NA	30	0	30	64.767	6.912	0	0	0	30	0	CATIP	exonic	synonymous_SNV
RCC_T5--2	chr2:219231771	G	NA	41	0	41	64.317	8.051	0	0	0	41	0	CATIP	exonic	synonymous_SNV
RCC_T5--3	chr2:219231771	G	NA	24	0	24	64.333	5.378	0	0	0	24	0	CATIP	exonic	synonymous_SNV
RCC_T5--4	chr2:219231771	G	T	27	0.148	23	66.826	4.228	4	71.000	1.414	23	4	CATIP	exonic	synonymous_SNV
RCC_T5--5	chr2:219231771	G	NA	19	0	19	63.947	6.346	0	0	0	19	0	CATIP	exonic	synonymous_SNV
RCC_T5--6	chr2:219231771	G	NA	37	0	36	65.722	7.474	0	0	0	36	0	CATIP	exonic	synonymous_SNV
RCC_T5--7	chr2:219231771	G	NA	36	0	36	64.889	6.952	0	0	0	36	0	CATIP	exonic	synonymous_SNV
RCC_T5--GL	chr2:219231771	G	NA	43	0	43	66.535	6.674	0	0	0	43	0	CATIP	exonic	synonymous_SNV
RCC_T5--1	chr2:220037499	T	G	25	0.040	24	64.958	8.600	1	33.000	0.000	24	1	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:220037499	T	G	26	0.038	25	65.320	5.907	1	33.000	0.000	25	1	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:220037499	T	G	37	0.108	33	64.424	9.338	4	35.250	2.630	33	4	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:220037499	T	G	45	0.111	39	60.974	11.424	5	40.600	4.775	39	5	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:220037499	T	G	36	0.139	31	64.871	9.326	5	36.000	1.732	31	5	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:220037499	T	G	33	0.091	30	65.000	9.713	3	35.667	2.309	30	3	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:220037499	T	G	31	0.194	24	61.333	10.785	6	39.167	3.817	24	6	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:220037499	T	NA	48	0	48	64.729	7.477	0	0	0	48	0	CNPPD1	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:220047123	A	C	65	0.031	63	58.190	10.796	2	40.000	9.899	63	2	FAM134A	exonic	synonymous_SNV
RCC_T5--2	chr2:220047123	A	C	62	0.065	57	56.632	10.816	4	37.500	9.000	57	4	FAM134A	exonic	synonymous_SNV
RCC_T5--3	chr2:220047123	A	C	73	0.151	60	56.617	10.557	11	37.273	5.676	60	11	FAM134A	exonic	synonymous_SNV
RCC_T5--4	chr2:220047123	A	NA	95	0	95	60.589	9.725	0	0	0	95	0	FAM134A	exonic	synonymous_SNV
RCC_T5--5	chr2:220047123	A	C	84	0.060	78	57.564	9.967	5	37.800	5.718	78	5	FAM134A	exonic	synonymous_SNV
RCC_T5--6	chr2:220047123	A	C	58	0.017	57	56.351	11.319	1	38.000	0.000	57	1	FAM134A	exonic	synonymous_SNV
RCC_T5--7	chr2:220047123	A	C	48	0.062	43	57.628	10.484	3	45.333	11.846	43	3	FAM134A	exonic	synonymous_SNV
RCC_T5--GL	chr2:220047123	A	NA	75	0	75	58.560	8.270	0	0	0	75	0	FAM134A	exonic	synonymous_SNV
RCC_T5--1	chr2:220333630	T	G	23	0.087	21	59.810	11.737	2	38.000	7.071	21	2	SPEG	exonic	synonymous_SNV
RCC_T5--2	chr2:220333630	T	G	18	0.278	13	58.385	10.821	5	34.200	1.643	13	5	SPEG	exonic	synonymous_SNV
RCC_T5--3	chr2:220333630	T	G	13	0.231	10	58.700	11.206	3	33.000	0.000	10	3	SPEG	exonic	synonymous_SNV
RCC_T5--4	chr2:220333630	T	NA	17	0	17	54.059	13.484	0	0	0	17	0	SPEG	exonic	synonymous_SNV
RCC_T5--5	chr2:220333630	T	NA	15	0	15	59.600	10.960	0	0	0	15	0	SPEG	exonic	synonymous_SNV
RCC_T5--6	chr2:220333630	T	G	13	0.077	12	56.583	11.524	1	33.000	0.000	12	1	SPEG	exonic	synonymous_SNV
RCC_T5--7	chr2:220333630	T	G	23	0.043	22	57.227	12.390	1	36.000	0.000	22	1	SPEG	exonic	synonymous_SNV
RCC_T5--GL	chr2:220333630	T	NA	35	0	35	60.971	10.651	0	0	0	35	0	SPEG	exonic	synonymous_SNV
RCC_T5--1	chr22:21350938	T	G	17	0.059	16	53.188	11.531	1	36.000	0.000	16	1	LZTR1	intronic	NA
RCC_T5--2	chr22:21350938	T	NA	20	0	20	55.900	9.531	0	0	0	20	0	LZTR1	intronic	NA
RCC_T5--3	chr22:21350938	T	G	17	0.412	10	55.000	10.033	7	35.429	1.718	10	7	LZTR1	intronic	NA
RCC_T5--4	chr22:21350938	T	G	28	0.036	27	58.000	8.744	1	36.000	0.000	27	1	LZTR1	intronic	NA
RCC_T5--5	chr22:21350938	T	G	26	0.038	25	54.760	9.739	1	43.000	0.000	25	1	LZTR1	intronic	NA
RCC_T5--6	chr22:21350938	T	G	14	0.071	13	52.000	9.764	1	33.000	0.000	13	1	LZTR1	intronic	NA
RCC_T5--7	chr22:21350938	T	NA	18	0	17	52.647	7.921	0	0	0	17	0	LZTR1	intronic	NA
RCC_T5--GL	chr22:21350938	T	NA	38	0	38	54.763	10.551	0	0	0	38	0	LZTR1	intronic	NA
RCC_T5--1	chr22:21989364	A	NA	33	0	33	61.364	10.374	0	0	0	33	0	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--2	chr22:21989364	A	C	35	0.143	30	60.033	11.171	5	40.200	4.919	30	5	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--3	chr22:21989364	A	NA	23	0	23	62.435	8.218	0	0	0	23	0	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--4	chr22:21989364	A	NA	29	0	29	60.345	10.695	0	0	0	29	0	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--5	chr22:21989364	A	C	39	0.077	36	61.583	9.551	3	41.000	5.196	36	3	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--6	chr22:21989364	A	C	27	0.074	25	59.560	9.461	2	35.500	3.536	25	2	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--7	chr22:21989364	A	NA	29	0	29	59.724	11.414	0	0	0	29	0	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--GL	chr22:21989364	A	NA	40	0	40	63.050	6.222	0	0	0	40	0	CCDC116	exonic	nonsynonymous_SNV
RCC_T5--1	chr22:24621238	T	NA	22	0	22	64.591	9.850	0	0	0	22	0	GGT5	exonic	nonsynonymous_SNV
RCC_T5--2	chr22:24621238	T	C	23	0.087	21	64.762	9.055	2	61.000	4.243	21	2	GGT5	exonic	nonsynonymous_SNV
RCC_T5--3	chr22:24621238	T	C	28	0.107	25	62.360	11.636	3	47.333	13.577	25	3	GGT5	exonic	nonsynonymous_SNV
RCC_T5--4	chr22:24621238	T	C	33	0.212	26	67.308	7.509	7	40.286	13.175	26	7	GGT5	exonic	nonsynonymous_SNV
RCC_T5--5	chr22:24621238	T	C	22	0.091	20	63.650	9.281	2	33.000	0.000	20	2	GGT5	exonic	nonsynonymous_SNV
RCC_T5--6	chr22:24621238	T	C	24	0.042	23	64.913	9.020	1	33.000	0.000	23	1	GGT5	exonic	nonsynonymous_SNV
RCC_T5--7	chr22:24621238	T	C	27	0.111	24	62.083	12.894	3	33.000	0.000	24	3	GGT5	exonic	nonsynonymous_SNV
RCC_T5--GL	chr22:24621238	T	NA	39	0	39	64.974	7.693	0	0	0	39	0	GGT5	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:225160467	G	NA	23	0	23	68.043	3.808	0	0	0	23	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--2	chr2:225160467	G	NA	31	0	31	70.065	2.351	0	0	0	31	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--3	chr2:225160467	G	NA	28	0	28	67.929	5.221	0	0	0	28	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--4	chr2:225160467	G	NA	30	0	30	69.233	3.266	0	0	0	30	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--5	chr2:225160467	G	NA	31	0	31	67.226	3.730	0	0	0	31	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--6	chr2:225160467	G	NA	44	0	44	67.864	7.306	0	0	0	44	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--7	chr2:225160467	G	A	28	0.214	22	67.818	4.102	6	67.167	5.707	22	6	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--GL	chr2:225160467	G	NA	33	0	33	69.364	3.587	0	0	0	33	0	SERPINE2(dist=256431),FAM124B(dist=82948)	intergenic	NA
RCC_T5--1	chr22:26937131	A	T	35	0.171	29	65.759	3.078	6	60.333	13.823	29	6	TPST2	exonic	nonsynonymous_SNV
RCC_T5--2	chr22:26937131	A	T	34	0.294	24	64.583	4.085	10	67.500	3.440	24	10	TPST2	exonic	nonsynonymous_SNV
RCC_T5--3	chr22:26937131	A	T	45	0.178	37	63.811	10.517	8	64.625	3.926	37	8	TPST2	exonic	nonsynonymous_SNV
RCC_T5--4	chr22:26937131	A	T	35	0.086	32	67.125	3.536	3	59.667	9.238	32	3	TPST2	exonic	nonsynonymous_SNV
RCC_T5--5	chr22:26937131	A	T	44	0.159	36	67.083	3.409	7	66.857	3.805	36	7	TPST2	exonic	nonsynonymous_SNV
RCC_T5--6	chr22:26937131	A	T	35	0.086	32	64.031	8.892	3	66.333	3.512	32	3	TPST2	exonic	nonsynonymous_SNV
RCC_T5--7	chr22:26937131	A	T	51	0.333	34	66.059	3.064	17	64.824	4.261	34	17	TPST2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr22:26937131	A	NA	34	0	34	66.088	3.793	0	0	0	34	0	TPST2	exonic	nonsynonymous_SNV
RCC_T5--1	chr22:30888451	C	T	27	0.111	24	65.125	6.576	3	70.333	1.528	24	3	SEC14L4	intronic	NA
RCC_T5--2	chr22:30888451	C	T	38	0.105	34	64.059	9.112	4	69.750	1.708	34	4	SEC14L4	intronic	NA
RCC_T5--3	chr22:30888451	C	T	22	0.227	17	61.706	10.318	5	63.400	6.804	17	5	SEC14L4	intronic	NA
RCC_T5--4	chr22:30888451	C	T	30	0.233	23	67.783	4.022	7	66.429	3.155	23	7	SEC14L4	intronic	NA
RCC_T5--5	chr22:30888451	C	T	32	0.312	22	65.727	5.556	10	65.200	7.193	22	10	SEC14L4	intronic	NA
RCC_T5--6	chr22:30888451	C	T	35	0.200	28	62.429	9.712	7	67.000	2.236	28	7	SEC14L4	intronic	NA
RCC_T5--7	chr22:30888451	C	T	38	0.211	30	65.167	7.493	8	66.000	3.423	30	8	SEC14L4	intronic	NA
RCC_T5--GL	chr22:30888451	C	NA	51	0	51	67.392	4.838	0	0	0	51	0	SEC14L4	intronic	NA
RCC_T5--1	chr22:31523926	A	C	46	0.022	44	57.136	11.585	1	33.000	0.000	44	1	INPP5J	intronic	NA
RCC_T5--2	chr22:31523926	A	C	43	0.140	36	59.750	9.446	6	35.833	1.472	36	6	INPP5J	intronic	NA
RCC_T5--3	chr22:31523926	A	NA	35	0	35	56.600	10.545	0	0	0	35	0	INPP5J	intronic	NA
RCC_T5--4	chr22:31523926	A	NA	45	0	45	59.089	9.716	0	0	0	45	0	INPP5J	intronic	NA
RCC_T5--5	chr22:31523926	A	C	45	0.022	44	57.545	11.013	1	58.000	0.000	44	1	INPP5J	intronic	NA
RCC_T5--6	chr22:31523926	A	NA	40	0	40	58.150	10.601	0	0	0	40	0	INPP5J	intronic	NA
RCC_T5--7	chr22:31523926	A	NA	57	0	57	56.105	8.999	0	0	0	57	0	INPP5J	intronic	NA
RCC_T5--GL	chr22:31523926	A	NA	54	0	53	56.245	13.625	0	0	0	53	0	INPP5J	intronic	NA
RCC_T5--1	chr2:233410365	A	NA	45	0	45	60.867	12.442	0	0	0	45	0	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:233410365	A	C	55	0.091	50	58.940	14.728	5	33.600	1.342	50	5	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:233410365	A	C	31	0.194	25	61.320	12.492	6	35.833	5.231	25	6	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:233410365	A	NA	59	0	59	60.136	11.390	0	0	0	59	0	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:233410365	A	NA	36	0	36	58.889	13.309	0	0	0	36	0	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:233410365	A	C	32	0.031	30	62.267	13.128	1	37.000	0.000	30	1	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:233410365	A	C	40	0.075	37	60.459	14.317	3	36.333	0.577	37	3	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:233410365	A	NA	49	0	48	62.167	9.909	0	0	0	48	0	CHRNG	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:233791798	T	NA	23	0	23	57.217	13.635	0	0	0	23	0	NGEF	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:233791798	T	G	40	0.025	37	59.189	13.178	1	33.000	0.000	37	1	NGEF	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:233791798	T	G	38	0.211	30	60.133	10.421	8	37.625	6.781	30	8	NGEF	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:233791798	T	G	41	0.073	38	59.605	10.026	3	35.667	2.309	38	3	NGEF	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:233791798	T	G	43	0.023	42	58.762	11.146	1	33.000	0.000	42	1	NGEF	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:233791798	T	G	38	0.079	35	59.943	11.889	3	37.667	5.033	35	3	NGEF	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:233791798	T	G	48	0.021	47	57.617	10.375	1	33.000	0.000	47	1	NGEF	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:233791798	T	NA	60	0	60	59.033	11.952	0	0	0	60	0	NGEF	exonic	nonsynonymous_SNV
RCC_T5--1	chr22:39479644	T	G	12	0.083	11	52.182	10.944	1	37.000	0.000	11	1	APOBEC3G	intronic	NA
RCC_T5--2	chr22:39479644	T	G	27	0.111	24	51.167	9.721	3	35.000	1.732	24	3	APOBEC3G	intronic	NA
RCC_T5--3	chr22:39479644	T	G	23	0.043	21	52.143	10.570	1	39.000	0.000	21	1	APOBEC3G	intronic	NA
RCC_T5--4	chr22:39479644	T	G	28	0.036	27	52.222	10.097	1	39.000	0.000	27	1	APOBEC3G	intronic	NA
RCC_T5--5	chr22:39479644	T	G	15	0.200	12	53.583	10.264	3	37.667	1.155	12	3	APOBEC3G	intronic	NA
RCC_T5--6	chr22:39479644	T	G	22	0.045	21	55.762	10.173	1	33.000	0.000	21	1	APOBEC3G	intronic	NA
RCC_T5--7	chr22:39479644	T	NA	16	0	14	54.571	10.316	0	0	0	14	0	APOBEC3G	intronic	NA
RCC_T5--GL	chr22:39479644	T	NA	39	0	38	51.711	9.421	0	0	0	38	0	APOBEC3G	intronic	NA
RCC_T5--1	chr2:241534427	T	NA	25	0	25	58.120	10.426	0	0	0	25	0	CAPN10	intronic	NA
RCC_T5--2	chr2:241534427	T	G	24	0.083	22	58.000	11.084	2	38.000	0.000	22	2	CAPN10	intronic	NA
RCC_T5--3	chr2:241534427	T	G	21	0.048	20	61.450	5.424	1	46.000	0.000	20	1	CAPN10	intronic	NA
RCC_T5--4	chr2:241534427	T	G	40	0.025	39	58.256	9.147	1	38.000	0.000	39	1	CAPN10	intronic	NA
RCC_T5--5	chr2:241534427	T	NA	33	0	32	55.281	10.116	0	0	0	32	0	CAPN10	intronic	NA
RCC_T5--6	chr2:241534427	T	G	31	0.194	25	54.520	12.480	6	37.167	3.371	25	6	CAPN10	intronic	NA
RCC_T5--7	chr2:241534427	T	G	40	0.075	37	57.865	8.690	3	41.333	5.774	37	3	CAPN10	intronic	NA
RCC_T5--GL	chr2:241534427	T	NA	33	0	33	57.848	11.102	0	0	0	33	0	CAPN10	intronic	NA
RCC_T5--1	chr2:241535353	T	G	64	0.062	59	57.475	11.796	4	36.000	6.000	59	4	CAPN10	intronic	NA
RCC_T5--2	chr2:241535353	T	G	40	0.175	33	56.364	11.008	7	37.571	5.653	33	7	CAPN10	intronic	NA
RCC_T5--3	chr2:241535353	T	G	48	0.042	46	59.652	10.348	2	36.000	4.243	46	2	CAPN10	intronic	NA
RCC_T5--4	chr2:241535353	T	G	54	0.019	52	55.981	12.334	1	33.000	0.000	52	1	CAPN10	intronic	NA
RCC_T5--5	chr2:241535353	T	G	55	0.036	53	56.660	11.244	2	35.000	2.828	53	2	CAPN10	intronic	NA
RCC_T5--6	chr2:241535353	T	G	42	0.095	38	59.711	10.503	4	37.500	9.000	38	4	CAPN10	intronic	NA
RCC_T5--7	chr2:241535353	T	G	58	0.052	54	59.519	9.884	3	35.667	2.309	54	3	CAPN10	intronic	NA
RCC_T5--GL	chr2:241535353	T	NA	56	0	56	60.446	9.244	0	0	0	56	0	CAPN10	intronic	NA
RCC_T5--1	chr22:43563932	A	G	31	0.097	28	57.643	12.120	3	35.000	1.732	28	3	TTLL12	UTR3	NA
RCC_T5--2	chr22:43563932	A	G	35	0.057	33	61.061	10.700	2	36.000	0.000	33	2	TTLL12	UTR3	NA
RCC_T5--3	chr22:43563932	A	G	36	0.028	34	59.647	10.586	1	43.000	0.000	34	1	TTLL12	UTR3	NA
RCC_T5--4	chr22:43563932	A	G	51	0.059	47	58.468	11.004	3	38.333	4.041	47	3	TTLL12	UTR3	NA
RCC_T5--5	chr22:43563932	A	NA	32	0	32	57.000	11.503	0	0	0	32	0	TTLL12	UTR3	NA
RCC_T5--6	chr22:43563932	A	G	24	0.292	17	60.000	11.816	7	35.286	6.047	17	7	TTLL12	UTR3	NA
RCC_T5--7	chr22:43563932	A	NA	35	0	35	62.400	8.722	0	0	0	35	0	TTLL12	UTR3	NA
RCC_T5--GL	chr22:43563932	A	NA	57	0	56	60.232	10.811	0	0	0	56	0	TTLL12	UTR3	NA
RCC_T5--1	chr22:44373771	G	NA	29	0	29	66.414	7.790	0	0	0	29	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--2	chr22:44373771	G	A	11	0.182	9	68.889	3.516	2	55.000	8.485	9	2	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--3	chr22:44373771	G	NA	15	0	15	63.333	9.983	0	0	0	15	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--4	chr22:44373771	G	NA	29	0	29	65.897	8.015	0	0	0	29	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--5	chr22:44373771	G	NA	26	0	26	65.962	7.790	0	0	0	26	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--6	chr22:44373771	G	NA	11	0	11	67.909	4.826	0	0	0	11	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--7	chr22:44373771	G	NA	26	0	26	68.615	3.601	0	0	0	26	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--GL	chr22:44373771	G	NA	41	0	41	67.537	7.124	0	0	0	41	0	SAMM50	exonic	nonsynonymous_SNV
RCC_T5--1	chr22:44543572	A	NA	38	0	37	62.568	8.345	0	0	0	37	0	PARVB	intronic	NA
RCC_T5--2	chr22:44543572	A	NA	46	0	46	63.348	9.144	0	0	0	46	0	PARVB	intronic	NA
RCC_T5--3	chr22:44543572	A	G	40	0.025	39	62.410	9.290	1	33.000	0.000	39	1	PARVB	intronic	NA
RCC_T5--4	chr22:44543572	A	G	35	0.114	30	66.467	6.564	4	69.750	3.304	30	4	PARVB	intronic	NA
RCC_T5--5	chr22:44543572	A	NA	30	0	29	65.793	6.920	0	0	0	29	0	PARVB	intronic	NA
RCC_T5--6	chr22:44543572	A	NA	55	0	55	63.618	9.344	0	0	0	55	0	PARVB	intronic	NA
RCC_T5--7	chr22:44543572	A	NA	48	0	47	66.064	5.231	0	0	0	47	0	PARVB	intronic	NA
RCC_T5--GL	chr22:44543572	A	NA	56	0	56	65.304	7.834	0	0	0	56	0	PARVB	intronic	NA
RCC_T5--1	chr22:47057344	A	C	26	0.038	24	55.292	9.238	1	56.000	0.000	24	1	GRAMD4	intronic	NA
RCC_T5--2	chr22:47057344	A	NA	29	0	28	52.500	10.351	0	0	0	28	0	GRAMD4	intronic	NA
RCC_T5--3	chr22:47057344	A	NA	23	0	23	53.217	8.096	0	0	0	23	0	GRAMD4	intronic	NA
RCC_T5--4	chr22:47057344	A	NA	36	0	35	60.257	8.763	0	0	0	35	0	GRAMD4	intronic	NA
RCC_T5--5	chr22:47057344	A	NA	38	0	37	57.243	8.122	0	0	0	37	0	GRAMD4	intronic	NA
RCC_T5--6	chr22:47057344	A	C	24	0.167	19	54.737	10.027	4	42.000	8.981	19	4	GRAMD4	intronic	NA
RCC_T5--7	chr22:47057344	A	C	36	0.028	34	56.853	10.145	1	36.000	0.000	34	1	GRAMD4	intronic	NA
RCC_T5--GL	chr22:47057344	A	NA	35	0	35	55.714	9.691	0	0	0	35	0	GRAMD4	intronic	NA
RCC_T5--1	chr22:51045299	T	G	40	0.100	36	52.333	11.311	4	35.250	1.500	36	4	MAPK8IP2	intronic	NA
RCC_T5--2	chr22:51045299	T	G	32	0.188	26	52.269	12.811	6	36.000	4.000	26	6	MAPK8IP2	intronic	NA
RCC_T5--3	chr22:51045299	T	G	33	0.121	29	51.345	11.998	4	36.250	0.500	29	4	MAPK8IP2	intronic	NA
RCC_T5--4	chr22:51045299	T	NA	34	0	34	59.382	8.941	0	0	0	34	0	MAPK8IP2	intronic	NA
RCC_T5--5	chr22:51045299	T	G	42	0.071	39	56.692	11.084	3	35.333	2.082	39	3	MAPK8IP2	intronic	NA
RCC_T5--6	chr22:51045299	T	G	31	0.065	29	55.414	11.670	2	35.000	2.828	29	2	MAPK8IP2	intronic	NA
RCC_T5--7	chr22:51045299	T	G	31	0.065	29	56.862	10.211	2	34.500	2.121	29	2	MAPK8IP2	intronic	NA
RCC_T5--GL	chr22:51045299	T	NA	49	0	49	56.122	11.620	0	0	0	49	0	MAPK8IP2	intronic	NA
RCC_T5--1	chr2:25344469	T	G	23	0.087	20	56.700	10.162	2	34.500	2.121	20	2	EFR3B	intronic	NA
RCC_T5--2	chr2:25344469	T	G	28	0.179	23	55.522	10.326	5	38.200	4.550	23	5	EFR3B	intronic	NA
RCC_T5--3	chr2:25344469	T	NA	22	0	22	55.955	11.416	0	0	0	22	0	EFR3B	intronic	NA
RCC_T5--4	chr2:25344469	T	G	27	0.074	25	58.200	11.402	2	36.000	0.000	25	2	EFR3B	intronic	NA
RCC_T5--5	chr2:25344469	T	NA	21	0	21	53.048	8.941	0	0	0	21	0	EFR3B	intronic	NA
RCC_T5--6	chr2:25344469	T	G	25	0.040	23	54.652	12.316	1	36.000	0.000	23	1	EFR3B	intronic	NA
RCC_T5--7	chr2:25344469	T	G	26	0.192	21	50.476	11.673	5	35.600	4.336	21	5	EFR3B	intronic	NA
RCC_T5--GL	chr2:25344469	T	NA	34	0	33	53.818	12.953	0	0	0	33	0	EFR3B	intronic	NA
RCC_T5--1	chr2:27429941	A	C	19	0.158	15	52.733	11.889	3	38.333	1.155	15	3	SLC5A6	intronic	NA
RCC_T5--2	chr2:27429941	A	C	34	0.206	27	53.593	10.874	7	36.286	2.360	27	7	SLC5A6	intronic	NA
RCC_T5--3	chr2:27429941	A	C	21	0.286	14	57.643	10.732	6	38.167	3.920	14	6	SLC5A6	intronic	NA
RCC_T5--4	chr2:27429941	A	C	35	0.114	31	59.161	9.585	4	39.250	4.500	31	4	SLC5A6	intronic	NA
RCC_T5--5	chr2:27429941	A	C	26	0.038	25	52.920	10.153	1	33.000	0.000	25	1	SLC5A6	intronic	NA
RCC_T5--6	chr2:27429941	A	C	29	0.034	28	53.929	9.249	1	39.000	0.000	28	1	SLC5A6	intronic	NA
RCC_T5--7	chr2:27429941	A	C	23	0.087	21	57.857	8.083	2	41.500	6.364	21	2	SLC5A6	intronic	NA
RCC_T5--GL	chr2:27429941	A	NA	34	0	33	58.939	8.481	0	0	0	33	0	SLC5A6	intronic	NA
RCC_T5--1	chr2:28812261	G	A	52	0.192	42	66.357	7.525	10	68.100	3.348	42	10	PLB1	intronic	NA
RCC_T5--2	chr2:28812261	G	A	42	0.262	31	67.806	7.427	11	66.545	9.267	31	11	PLB1	intronic	NA
RCC_T5--3	chr2:28812261	G	A	56	0.161	47	68.851	3.007	9	62.889	9.075	47	9	PLB1	intronic	NA
RCC_T5--4	chr2:28812261	G	A	46	0.065	43	68.140	4.955	3	68.000	3.606	43	3	PLB1	intronic	NA
RCC_T5--5	chr2:28812261	G	A	42	0.214	32	66.906	7.235	9	69.556	3.395	32	9	PLB1	intronic	NA
RCC_T5--6	chr2:28812261	G	A	35	0.171	29	68.828	3.694	6	66.833	4.401	29	6	PLB1	intronic	NA
RCC_T5--7	chr2:28812261	G	A	39	0.410	23	66.739	4.663	16	69.938	2.380	23	16	PLB1	intronic	NA
RCC_T5--GL	chr2:28812261	G	NA	79	0	78	69.000	5.340	0	0	0	78	0	PLB1	intronic	NA
RCC_T5--1	chr2:29446321	C	T	36	0.139	31	66.129	6.454	5	61.400	13.278	31	5	ALK	exonic	synonymous_SNV
RCC_T5--2	chr2:29446321	C	T	27	0.222	21	66.286	6.246	6	67.333	1.633	21	6	ALK	exonic	synonymous_SNV
RCC_T5--3	chr2:29446321	C	T	33	0.030	32	63.188	10.184	1	70.000	0.000	32	1	ALK	exonic	synonymous_SNV
RCC_T5--4	chr2:29446321	C	T	49	0.102	44	65.295	6.294	5	68.600	4.278	44	5	ALK	exonic	synonymous_SNV
RCC_T5--5	chr2:29446321	C	T	27	0.148	23	61.478	10.816	4	65.500	3.317	23	4	ALK	exonic	synonymous_SNV
RCC_T5--6	chr2:29446321	C	T	28	0.036	27	64.778	10.871	1	65.000	0.000	27	1	ALK	exonic	synonymous_SNV
RCC_T5--7	chr2:29446321	C	T	36	0.194	29	65.000	7.630	7	57.857	11.452	29	7	ALK	exonic	synonymous_SNV
RCC_T5--GL	chr2:29446321	C	NA	49	0	49	67.143	3.780	0	0	0	49	0	ALK	exonic	synonymous_SNV
RCC_T5--1	chr2:31483612	C	T	66	0.227	51	63.941	9.343	15	63.667	10.076	51	15	EHD3	exonic	nonsynonymous_SNV
RCC_T5--2	chr2:31483612	C	T	60	0.167	50	66.780	4.577	10	60.700	10.843	50	10	EHD3	exonic	nonsynonymous_SNV
RCC_T5--3	chr2:31483612	C	T	61	0.213	48	65.833	5.191	13	66.154	3.671	48	13	EHD3	exonic	nonsynonymous_SNV
RCC_T5--4	chr2:31483612	C	T	57	0.053	54	67.833	3.815	3	68.000	2.000	54	3	EHD3	exonic	nonsynonymous_SNV
RCC_T5--5	chr2:31483612	C	T	73	0.233	56	65.143	5.402	17	67.235	3.270	56	17	EHD3	exonic	nonsynonymous_SNV
RCC_T5--6	chr2:31483612	C	T	55	0.145	47	64.213	9.491	8	68.125	3.441	47	8	EHD3	exonic	nonsynonymous_SNV
RCC_T5--7	chr2:31483612	C	T	68	0.338	45	65.978	6.232	23	63.913	9.327	45	23	EHD3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr2:31483612	C	NA	91	0	91	64.495	8.842	0	0	0	91	0	EHD3	exonic	nonsynonymous_SNV
RCC_T5--1	chr2:37368684	A	G	263	0.202	208	66.091	6.282	53	66.415	6.295	208	53	EIF2AK2	intronic	NA
RCC_T5--2	chr2:37368684	A	G	258	0.182	211	67.550	5.045	47	66.830	3.858	211	47	EIF2AK2	intronic	NA
RCC_T5--3	chr2:37368684	A	G	243	0.140	209	66.411	5.556	34	67.882	3.691	209	34	EIF2AK2	intronic	NA
RCC_T5--4	chr2:37368684	A	G	286	0.129	249	67.743	4.836	37	68.270	3.212	249	37	EIF2AK2	intronic	NA
RCC_T5--5	chr2:37368684	A	G	227	0.256	169	66.178	6.693	58	67.672	4.821	169	58	EIF2AK2	intronic	NA
RCC_T5--6	chr2:37368684	A	G	238	0.101	214	67.075	5.230	24	66.792	5.357	214	24	EIF2AK2	intronic	NA
RCC_T5--7	chr2:37368684	A	G	280	0.300	196	67.224	4.970	84	67.976	3.536	196	84	EIF2AK2	intronic	NA
RCC_T5--GL	chr2:37368684	A	NA	365	0	365	67.233	4.820	0	0	0	365	0	EIF2AK2	intronic	NA
RCC_T5--1	chr2:37426812	C	T	155	0.148	131	67.176	6.931	23	67.130	2.817	131	23	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--2	chr2:37426812	C	T	178	0.202	142	68.331	3.913	36	68.556	4.010	142	36	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--3	chr2:37426812	C	T	156	0.147	132	68.758	4.642	23	67.957	3.867	132	23	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--4	chr2:37426812	C	T	169	0.142	145	68.710	4.969	24	66.750	6.752	145	24	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--5	chr2:37426812	C	T	142	0.246	107	67.495	6.480	35	67.314	4.411	107	35	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--6	chr2:37426812	C	T	152	0.171	126	68.016	6.238	26	69.038	3.231	126	26	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--7	chr2:37426812	C	T	132	0.265	97	69.113	3.663	35	70.114	2.233	97	35	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--GL	chr2:37426812	C	NA	223	0	223	69.040	3.898	0	0	0	223	0	CEBPZ-AS1	ncRNA_intronic	NA
RCC_T5--1	chr2:39107959	A	C	31	0.226	24	67.917	6.580	7	71.143	1.464	24	7	MORN2	intronic	NA
RCC_T5--2	chr2:39107959	A	C	35	0.114	31	69.871	2.754	4	68.750	3.304	31	4	MORN2	intronic	NA
RCC_T5--3	chr2:39107959	A	C	42	0.143	36	69.917	2.285	6	66.667	5.680	36	6	MORN2	intronic	NA
RCC_T5--4	chr2:39107959	A	C	38	0.184	31	69.774	3.074	7	67.143	5.900	31	7	MORN2	intronic	NA
RCC_T5--5	chr2:39107959	A	C	42	0.190	34	69.412	3.322	8	67.875	5.194	34	8	MORN2	intronic	NA
RCC_T5--6	chr2:39107959	A	C	46	0.130	40	69.575	3.961	6	70.833	1.472	40	6	MORN2	intronic	NA
RCC_T5--7	chr2:39107959	A	C	34	0.206	27	69.963	2.609	7	70.000	2.000	27	7	MORN2	intronic	NA
RCC_T5--GL	chr2:39107959	A	NA	51	0	51	69.882	3.427	0	0	0	51	0	MORN2	intronic	NA
RCC_T5--1	chr2:42046980	G	A	46	0.196	36	64.611	7.994	9	62.444	4.333	36	9	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--2	chr2:42046980	G	A	77	0.221	60	66.983	7.480	17	63.882	11.984	60	17	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--3	chr2:42046980	G	A	57	0.123	50	67.400	4.598	7	67.429	4.198	50	7	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--4	chr2:42046980	G	A	90	0.122	79	66.937	6.062	11	65.909	4.061	79	11	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--5	chr2:42046980	G	A	54	0.185	44	65.295	8.506	10	66.300	3.129	44	10	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--6	chr2:42046980	G	A	78	0.154	66	67.136	5.959	12	65.500	6.098	66	12	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--7	chr2:42046980	G	A	70	0.314	48	67.083	6.533	22	67.455	3.128	48	22	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--GL	chr2:42046980	G	NA	79	0	79	66.253	5.687	0	0	0	79	0	SLC8A1(dist=1307405),AC104654.1(dist=57715)	intergenic	NA
RCC_T5--1	chr2:70515067	G	T	22	0.091	20	65.600	7.836	2	63.500	2.121	20	2	SNRPG	intronic	NA
RCC_T5--2	chr2:70515067	G	T	23	0.087	21	69.143	4.316	2	66.500	2.121	21	2	SNRPG	intronic	NA
RCC_T5--3	chr2:70515067	G	NA	24	0	24	67.667	4.949	0	0	0	24	0	SNRPG	intronic	NA
RCC_T5--4	chr2:70515067	G	T	35	0.057	33	68.364	6.143	2	67.000	1.414	33	2	SNRPG	intronic	NA
RCC_T5--5	chr2:70515067	G	T	14	0.071	13	68.846	3.648	1	58.000	0.000	13	1	SNRPG	intronic	NA
RCC_T5--6	chr2:70515067	G	T	24	0.042	23	64.435	10.326	1	68.000	0.000	23	1	SNRPG	intronic	NA
RCC_T5--7	chr2:70515067	G	T	18	0.278	13	67.000	3.512	5	66.000	2.828	13	5	SNRPG	intronic	NA
RCC_T5--GL	chr2:70515067	G	NA	51	0	51	67.627	4.391	0	0	0	51	0	SNRPG	intronic	NA
RCC_T5--1	chr2:85542569	A	NA	21	0	21	65.667	5.043	0	0	0	21	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--2	chr2:85542569	A	NA	30	0	30	65.700	6.092	0	0	0	30	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--3	chr2:85542569	A	NA	33	0	33	66.333	4.349	0	0	0	33	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--4	chr2:85542569	A	G	30	0.133	26	65.500	7.290	4	62.250	7.848	26	4	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--5	chr2:85542569	A	NA	18	0	18	61.778	10.167	0	0	0	18	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--6	chr2:85542569	A	NA	29	0	29	65.931	5.952	0	0	0	29	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--7	chr2:85542569	A	NA	13	0	13	68.769	2.862	0	0	0	13	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--GL	chr2:85542569	A	NA	41	0	41	66.293	5.938	0	0	0	41	0	TCF7L1(dist=5058),TGOLN2(dist=2572)	intergenic	NA
RCC_T5--1	chr2:85828625	A	C	37	0.027	35	55.514	11.286	1	46.000	0.000	35	1	TMEM150A	intronic	NA
RCC_T5--2	chr2:85828625	A	C	32	0.031	31	58.839	9.166	1	33.000	0.000	31	1	TMEM150A	intronic	NA
RCC_T5--3	chr2:85828625	A	C	33	0.091	30	55.567	11.512	3	35.333	2.082	30	3	TMEM150A	intronic	NA
RCC_T5--4	chr2:85828625	A	NA	42	0	42	59.714	8.648	0	0	0	42	0	TMEM150A	intronic	NA
RCC_T5--5	chr2:85828625	A	NA	30	0	30	58.600	9.489	0	0	0	30	0	TMEM150A	intronic	NA
RCC_T5--6	chr2:85828625	A	C	23	0.174	19	56.789	11.133	4	38.750	4.646	19	4	TMEM150A	intronic	NA
RCC_T5--7	chr2:85828625	A	C	30	0.033	28	59.893	7.700	1	46.000	0.000	28	1	TMEM150A	intronic	NA
RCC_T5--GL	chr2:85828625	A	NA	39	0	38	57.868	8.749	0	0	0	38	0	TMEM150A	intronic	NA
RCC_T5--1	chr2:86682410	C	T	27	0.185	22	57.864	11.226	5	44.200	10.872	22	5	KDM3A	intronic	NA
RCC_T5--2	chr2:86682410	C	T	16	0.125	14	56.500	13.195	2	37.000	0.000	14	2	KDM3A	intronic	NA
RCC_T5--3	chr2:86682410	C	T	24	0.083	22	59.636	13.450	2	36.000	0.000	22	2	KDM3A	intronic	NA
RCC_T5--4	chr2:86682410	C	T	29	0.069	27	58.889	11.547	2	51.000	21.213	27	2	KDM3A	intronic	NA
RCC_T5--5	chr2:86682410	C	T	21	0.095	19	54.526	13.986	2	34.500	2.121	19	2	KDM3A	intronic	NA
RCC_T5--6	chr2:86682410	C	T	28	0.036	27	55.704	13.657	1	33.000	0.000	27	1	KDM3A	intronic	NA
RCC_T5--7	chr2:86682410	C	NA	17	0	17	62.000	9.158	0	0	0	17	0	KDM3A	intronic	NA
RCC_T5--GL	chr2:86682410	C	NA	37	0	37	54.730	13.650	0	0	0	37	0	KDM3A	intronic	NA
RCC_T5--1	chr2:91927261	A	G	30	0.033	29	62.931	10.964	1	33.000	0.000	29	1	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--2	chr2:91927261	A	G	30	0.167	25	62.880	10.533	5	44.200	15.156	25	5	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--3	chr2:91927261	A	G	40	0.150	34	62.265	12.635	6	42.167	10.685	34	6	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--4	chr2:91927261	A	G	33	0.061	31	60.161	12.439	2	33.000	0.000	31	2	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--5	chr2:91927261	A	G	34	0.029	33	64.697	6.734	1	46.000	0.000	33	1	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--6	chr2:91927261	A	G	37	0.108	33	58.394	13.077	4	33.000	0.000	33	4	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--7	chr2:91927261	A	G	42	0.095	38	58.684	12.893	4	43.500	13.404	38	4	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--GL	chr2:91927261	A	NA	37	0	36	63.556	10.563	0	0	0	36	0	LOC654342(dist=79286),GGT8P(dist=36107)	intergenic	NA
RCC_T5--1	chr2:96799738	G	NA	25	0	25	65.080	5.275	0	0	0	25	0	ASTL	exonic	synonymous_SNV
RCC_T5--2	chr2:96799738	G	NA	22	0	22	65.045	5.159	0	0	0	22	0	ASTL	exonic	synonymous_SNV
RCC_T5--3	chr2:96799738	G	NA	16	0	16	65.062	4.582	0	0	0	16	0	ASTL	exonic	synonymous_SNV
RCC_T5--4	chr2:96799738	G	A	28	0.143	24	66.417	3.425	4	65.500	1.000	24	4	ASTL	exonic	synonymous_SNV
RCC_T5--5	chr2:96799738	G	NA	17	0	17	64.824	7.844	0	0	0	17	0	ASTL	exonic	synonymous_SNV
RCC_T5--6	chr2:96799738	G	NA	24	0	24	62.250	7.362	0	0	0	24	0	ASTL	exonic	synonymous_SNV
RCC_T5--7	chr2:96799738	G	NA	30	0	30	66.333	4.693	0	0	0	30	0	ASTL	exonic	synonymous_SNV
RCC_T5--GL	chr2:96799738	G	NA	40	0	40	65.850	4.282	0	0	0	40	0	ASTL	exonic	synonymous_SNV
RCC_T5--1	chr2:97506151	A	C	21	0.190	17	59.706	10.879	4	37.500	9.000	17	4	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--2	chr2:97506151	A	NA	24	0	24	62.000	8.900	0	0	0	24	0	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--3	chr2:97506151	A	C	18	0.056	17	62.765	8.892	1	38.000	0.000	17	1	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--4	chr2:97506151	A	C	29	0.034	28	63.786	7.161	1	33.000	0.000	28	1	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--5	chr2:97506151	A	NA	13	0	12	59.583	11.532	0	0	0	12	0	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--6	chr2:97506151	A	NA	15	0	14	64.357	6.946	0	0	0	14	0	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--7	chr2:97506151	A	NA	12	0	12	62.667	12.579	0	0	0	12	0	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--GL	chr2:97506151	A	NA	39	0	39	63.000	9.015	0	0	0	39	0	ANKRD23(NM_144994:exon6:c.525+2T>G)	splicing	NA
RCC_T5--1	chr2:97875803	A	C	23	0.043	22	53.591	9.654	1	33.000	0.000	22	1	ANKRD36	intronic	NA
RCC_T5--2	chr2:97875803	A	NA	18	0	18	64.611	3.600	0	0	0	18	0	ANKRD36	intronic	NA
RCC_T5--3	chr2:97875803	A	NA	37	0	36	56.056	9.453	0	0	0	36	0	ANKRD36	intronic	NA
RCC_T5--4	chr2:97875803	A	NA	38	0	37	59.000	9.964	0	0	0	37	0	ANKRD36	intronic	NA
RCC_T5--5	chr2:97875803	A	NA	31	0	31	57.000	10.208	0	0	0	31	0	ANKRD36	intronic	NA
RCC_T5--6	chr2:97875803	A	C	30	0.167	24	56.875	9.090	5	40.200	2.683	24	5	ANKRD36	intronic	NA
RCC_T5--7	chr2:97875803	A	NA	14	0	14	58.071	11.566	0	0	0	14	0	ANKRD36	intronic	NA
RCC_T5--GL	chr2:97875803	A	NA	41	0	41	59.561	7.463	0	0	0	41	0	ANKRD36	intronic	NA
RCC_T5--1	chr3:10261449	A	T	17	0.176	14	66.214	6.091	3	48.333	7.234	14	3	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:10261449	A	NA	39	0	38	65.974	6.812	0	0	0	38	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:10261449	A	NA	22	0	22	65.227	9.284	0	0	0	22	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:10261449	A	NA	28	0	28	67.036	7.691	0	0	0	28	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:10261449	A	NA	23	0	23	63.522	10.782	0	0	0	23	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:10261449	A	NA	25	0	25	67.280	5.029	0	0	0	25	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:10261449	A	NA	25	0	25	65.520	8.525	0	0	0	25	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:10261449	A	NA	42	0	42	65.238	7.166	0	0	0	42	0	IRAK2	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:10384636	T	NA	34	0	34	62.176	8.902	0	0	0	34	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:10384636	T	NA	21	0	21	68.143	3.596	0	0	0	21	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:10384636	T	NA	29	0	29	64.517	9.829	0	0	0	29	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:10384636	T	A	36	0.111	32	66.188	7.342	4	65.750	1.708	32	4	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:10384636	T	NA	34	0	34	64.853	9.056	0	0	0	34	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:10384636	T	NA	27	0	27	65.778	7.485	0	0	0	27	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:10384636	T	NA	32	0	32	67.031	4.418	0	0	0	32	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:10384636	T	NA	37	0	37	67.865	5.132	0	0	0	37	0	ATP2B2	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:109052898	A	C	35	0.057	33	56.788	9.269	2	35.000	2.828	33	2	DPPA4	intronic	NA
RCC_T5--2	chr3:109052898	A	NA	28	0	28	54.036	11.010	0	0	0	28	0	DPPA4	intronic	NA
RCC_T5--3	chr3:109052898	A	C	38	0.211	30	58.933	8.526	8	35.875	2.475	30	8	DPPA4	intronic	NA
RCC_T5--4	chr3:109052898	A	C	19	0.105	17	59.235	5.804	2	33.000	0.000	17	2	DPPA4	intronic	NA
RCC_T5--5	chr3:109052898	A	C	26	0.038	25	56.000	11.376	1	48.000	0.000	25	1	DPPA4	intronic	NA
RCC_T5--6	chr3:109052898	A	NA	20	0	20	55.550	9.495	0	0	0	20	0	DPPA4	intronic	NA
RCC_T5--7	chr3:109052898	A	NA	14	0	14	57.857	9.037	0	0	0	14	0	DPPA4	intronic	NA
RCC_T5--GL	chr3:109052898	A	NA	41	0	41	58.000	8.941	0	0	0	41	0	DPPA4	intronic	NA
RCC_T5--1	chr3:112357764	A	C	41	0.098	37	55.351	11.295	4	37.000	2.828	37	4	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:112357764	A	C	48	0.125	42	53.143	13.056	6	37.500	3.332	42	6	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:112357764	A	C	46	0.087	42	55.024	12.270	4	33.750	1.500	42	4	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:112357764	A	C	59	0.051	55	57.309	10.514	3	37.667	1.155	55	3	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:112357764	A	NA	43	0	42	58.381	10.061	0	0	0	42	0	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:112357764	A	C	46	0.174	38	57.526	12.687	8	38.875	5.249	38	8	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:112357764	A	C	42	0.095	37	54.919	11.141	4	35.000	2.309	37	4	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:112357764	A	NA	48	0	48	53.229	12.023	0	0	0	48	0	CCDC80	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:123987502	A	NA	22	0	22	63.364	7.706	0	0	0	22	0	KALRN	intronic	NA
RCC_T5--2	chr3:123987502	A	NA	27	0	27	67.444	3.355	0	0	0	27	0	KALRN	intronic	NA
RCC_T5--3	chr3:123987502	A	NA	24	0	24	63.583	10.261	0	0	0	24	0	KALRN	intronic	NA
RCC_T5--4	chr3:123987502	A	NA	33	0	32	65.344	6.665	0	0	0	32	0	KALRN	intronic	NA
RCC_T5--5	chr3:123987502	A	NA	27	0	27	63.556	8.154	0	0	0	27	0	KALRN	intronic	NA
RCC_T5--6	chr3:123987502	A	NA	31	0	31	62.935	8.790	0	0	0	31	0	KALRN	intronic	NA
RCC_T5--7	chr3:123987502	A	C	29	0.207	23	65.043	5.842	6	65.667	0.516	23	6	KALRN	intronic	NA
RCC_T5--GL	chr3:123987502	A	NA	40	0	39	65.538	5.946	0	0	0	39	0	KALRN	intronic	NA
RCC_T5--1	chr3:12785399	C	NA	21	0	21	65.286	5.405	0	0	0	21	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:12785399	C	NA	26	0	26	67.538	4.768	0	0	0	26	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:12785399	C	T	24	0.125	21	63.810	8.869	3	66.333	5.508	21	3	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:12785399	C	NA	43	0	43	64.419	7.716	0	0	0	43	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:12785399	C	NA	27	0	27	65.852	6.632	0	0	0	27	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:12785399	C	NA	25	0	25	64.320	8.464	0	0	0	25	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:12785399	C	NA	33	0	33	63.788	10.499	0	0	0	33	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:12785399	C	NA	40	0	40	65.175	7.225	0	0	0	40	0	TMEM40	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:142546195	A	NA	36	0	36	57.917	12.434	0	0	0	36	0	PCOLCE2	intronic	NA
RCC_T5--2	chr3:142546195	A	C	37	0.054	35	57.257	11.215	2	33.000	0.000	35	2	PCOLCE2	intronic	NA
RCC_T5--3	chr3:142546195	A	C	37	0.162	31	56.710	12.023	6	38.000	3.950	31	6	PCOLCE2	intronic	NA
RCC_T5--4	chr3:142546195	A	C	36	0.083	32	59.531	10.650	3	38.667	9.815	32	3	PCOLCE2	intronic	NA
RCC_T5--5	chr3:142546195	A	NA	37	0	37	55.703	12.101	0	0	0	37	0	PCOLCE2	intronic	NA
RCC_T5--6	chr3:142546195	A	C	45	0.111	40	51.725	12.999	5	37.600	5.367	40	5	PCOLCE2	intronic	NA
RCC_T5--7	chr3:142546195	A	C	24	0.042	23	61.565	10.008	1	54.000	0.000	23	1	PCOLCE2	intronic	NA
RCC_T5--GL	chr3:142546195	A	NA	52	0	52	59.942	10.218	0	0	0	52	0	PCOLCE2	intronic	NA
RCC_T5--1	chr3:16734726	T	A	19	0.158	16	64.750	6.126	3	68.667	3.215	16	3	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--2	chr3:16734726	T	A	30	0.167	25	63.720	8.434	5	67.600	6.693	25	5	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--3	chr3:16734726	T	A	23	0.261	17	66.529	6.206	6	69.833	2.714	17	6	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--4	chr3:16734726	T	A	29	0.172	24	69.708	2.422	5	67.600	4.827	24	5	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--5	chr3:16734726	T	A	21	0.333	14	66.071	8.371	7	68.429	2.299	14	7	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--6	chr3:16734726	T	A	20	0.200	16	65.500	9.302	4	69.250	3.202	16	4	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--7	chr3:16734726	T	A	14	0.786	3	71.333	0.577	11	69.000	3.162	3	11	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--GL	chr3:16734726	T	NA	34	0	34	64.706	9.213	0	0	0	34	0	DAZL(dist=87720),PLCL2(dist=191726)	intergenic	NA
RCC_T5--1	chr3:170929237	T	C	17	0.294	12	67.417	4.055	5	69.600	1.817	12	5	TNIK	intronic	NA
RCC_T5--2	chr3:170929237	T	C	30	0.200	24	69.250	2.472	6	70.167	1.602	24	6	TNIK	intronic	NA
RCC_T5--3	chr3:170929237	T	C	35	0.143	30	66.000	7.589	5	67.000	1.581	30	5	TNIK	intronic	NA
RCC_T5--4	chr3:170929237	T	C	63	0.079	58	67.534	6.454	5	66.800	3.114	58	5	TNIK	intronic	NA
RCC_T5--5	chr3:170929237	T	C	27	0.370	17	64.941	9.344	10	70.000	1.633	17	10	TNIK	intronic	NA
RCC_T5--6	chr3:170929237	T	C	34	0.176	28	68.393	3.814	6	66.500	5.394	28	6	TNIK	intronic	NA
RCC_T5--7	chr3:170929237	T	C	24	0.375	15	68.467	3.777	9	68.000	3.536	15	9	TNIK	intronic	NA
RCC_T5--GL	chr3:170929237	T	NA	54	0	54	68.444	3.937	0	0	0	54	0	TNIK	intronic	NA
RCC_T5--1	chr3:178927512	T	C	131	0.275	95	65.926	6.220	36	68.694	3.686	95	36	PIK3CA	intronic	NA
RCC_T5--2	chr3:178927512	T	C	145	0.131	126	68.175	3.707	19	67.842	3.671	126	19	PIK3CA	intronic	NA
RCC_T5--3	chr3:178927512	T	C	154	0.123	135	67.630	5.495	19	67.842	4.787	135	19	PIK3CA	intronic	NA
RCC_T5--4	chr3:178927512	T	C	185	0.189	150	67.813	5.065	35	67.571	3.475	150	35	PIK3CA	intronic	NA
RCC_T5--5	chr3:178927512	T	C	148	0.216	116	68.121	4.542	32	67.969	5.992	116	32	PIK3CA	intronic	NA
RCC_T5--6	chr3:178927512	T	C	178	0.129	154	67.831	5.033	23	68.391	3.144	154	23	PIK3CA	intronic	NA
RCC_T5--7	chr3:178927512	T	C	115	0.435	65	68.846	3.580	50	68.160	3.565	65	50	PIK3CA	intronic	NA
RCC_T5--GL	chr3:178927512	T	NA	192	0	191	68.707	4.017	0	0	0	191	0	PIK3CA	intronic	NA
RCC_T5--1	chr3:182607208	A	G	95	0.074	88	67.432	5.848	7	61.143	12.851	88	7	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:182607208	A	G	142	0.141	122	68.467	3.505	20	66.550	4.639	122	20	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:182607208	A	G	129	0.209	102	67.725	4.807	27	66.963	4.653	102	27	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:182607208	A	G	171	0.140	147	68.776	3.320	24	66.583	4.190	147	24	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:182607208	A	G	107	0.131	93	67.828	3.164	14	66.857	8.189	93	14	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:182607208	A	G	152	0.132	132	68.295	4.173	20	67.850	4.356	132	20	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:182607208	A	G	117	0.171	97	66.227	6.491	20	68.450	3.300	97	20	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:182607208	A	NA	212	0	212	68.443	3.434	0	0	0	212	0	ATP11B	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:183643273	C	NA	25	0	25	64.160	9.986	0	0	0	25	0	ABCC5	intronic	NA
RCC_T5--2	chr3:183643273	C	NA	27	0	27	65.519	10.074	0	0	0	27	0	ABCC5	intronic	NA
RCC_T5--3	chr3:183643273	C	NA	24	0	24	65.083	7.934	0	0	0	24	0	ABCC5	intronic	NA
RCC_T5--4	chr3:183643273	C	A	32	0.125	28	67.786	4.104	4	67.500	4.796	28	4	ABCC5	intronic	NA
RCC_T5--5	chr3:183643273	C	NA	18	0	18	68.389	3.165	0	0	0	18	0	ABCC5	intronic	NA
RCC_T5--6	chr3:183643273	C	NA	31	0	31	67.194	9.901	0	0	0	31	0	ABCC5	intronic	NA
RCC_T5--7	chr3:183643273	C	NA	20	0	20	67.700	4.473	0	0	0	20	0	ABCC5	intronic	NA
RCC_T5--GL	chr3:183643273	C	NA	51	0	51	68.588	4.109	0	0	0	51	0	ABCC5	intronic	NA
RCC_T5--1	chr3:184064489	C	NA	15	0	15	66.400	5.124	0	0	0	15	0	CLCN2	exonic	stopgain_SNV
RCC_T5--2	chr3:184064489	C	NA	23	0	23	66.304	5.226	0	0	0	23	0	CLCN2	exonic	stopgain_SNV
RCC_T5--3	chr3:184064489	C	NA	15	0	15	65.533	9.819	0	0	0	15	0	CLCN2	exonic	stopgain_SNV
RCC_T5--4	chr3:184064489	C	A	24	0.167	20	65.400	7.619	4	64.750	0.957	20	4	CLCN2	exonic	stopgain_SNV
RCC_T5--5	chr3:184064489	C	NA	23	0	23	65.217	7.781	0	0	0	23	0	CLCN2	exonic	stopgain_SNV
RCC_T5--6	chr3:184064489	C	NA	25	0	25	65.680	8.630	0	0	0	25	0	CLCN2	exonic	stopgain_SNV
RCC_T5--7	chr3:184064489	C	NA	18	0	18	66.222	5.397	0	0	0	18	0	CLCN2	exonic	stopgain_SNV
RCC_T5--GL	chr3:184064489	C	NA	47	0	47	63.532	10.008	0	0	0	47	0	CLCN2	exonic	stopgain_SNV
RCC_T5--1	chr3:186793228	A	NA	14	0	14	67.643	2.845	0	0	0	14	0	ST6GAL1	intronic	NA
RCC_T5--2	chr3:186793228	A	NA	24	0	24	68.083	3.202	0	0	0	24	0	ST6GAL1	intronic	NA
RCC_T5--3	chr3:186793228	A	NA	25	0	25	67.480	4.584	0	0	0	25	0	ST6GAL1	intronic	NA
RCC_T5--4	chr3:186793228	A	T	22	0.227	17	67.882	2.956	5	58.200	14.237	17	5	ST6GAL1	intronic	NA
RCC_T5--5	chr3:186793228	A	NA	19	0	19	69.316	2.451	0	0	0	19	0	ST6GAL1	intronic	NA
RCC_T5--6	chr3:186793228	A	NA	24	0	24	66.667	7.960	0	0	0	24	0	ST6GAL1	intronic	NA
RCC_T5--7	chr3:186793228	A	NA	17	0	17	68.588	3.043	0	0	0	17	0	ST6GAL1	intronic	NA
RCC_T5--GL	chr3:186793228	A	NA	36	0	36	69.222	5.890	0	0	0	36	0	ST6GAL1	intronic	NA
RCC_T5--1	chr3:187419664	C	T	31	0.065	29	67.448	5.349	2	61.500	4.950	29	2	RTP2	intronic	NA
RCC_T5--2	chr3:187419664	C	T	18	0.056	17	69.118	2.288	1	62.000	0.000	17	1	RTP2	intronic	NA
RCC_T5--3	chr3:187419664	C	T	22	0.091	20	65.600	5.605	2	47.000	12.728	20	2	RTP2	intronic	NA
RCC_T5--4	chr3:187419664	C	T	24	0.125	21	67.000	3.619	3	43.667	18.475	21	3	RTP2	intronic	NA
RCC_T5--5	chr3:187419664	C	T	30	0.033	29	65.034	7.808	1	65.000	0.000	29	1	RTP2	intronic	NA
RCC_T5--6	chr3:187419664	C	NA	37	0	37	66.297	5.147	0	0	0	37	0	RTP2	intronic	NA
RCC_T5--7	chr3:187419664	C	T	12	0.250	9	65.444	12.218	3	52.333	16.743	9	3	RTP2	intronic	NA
RCC_T5--GL	chr3:187419664	C	NA	38	0	38	64.921	10.281	0	0	0	38	0	RTP2	intronic	NA
RCC_T5--1	chr3:35763137	C	A	44	0.114	39	62.410	10.671	5	63.800	6.870	39	5	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:35763137	C	NA	36	0	36	65.472	6.789	0	0	0	36	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:35763137	C	NA	27	0	27	65.593	4.388	0	0	0	27	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:35763137	C	NA	37	0	37	67.027	6.910	0	0	0	37	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:35763137	C	A	37	0.162	31	65.323	7.773	6	68.167	4.262	31	6	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:35763137	C	NA	42	0	42	66.405	6.545	0	0	0	42	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:35763137	C	NA	29	0	29	67.966	3.201	0	0	0	29	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:35763137	C	NA	50	0	50	65.900	6.771	0	0	0	50	0	ARPP21	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:39166626	T	G	43	0.093	38	61.368	11.144	4	33.000	0.000	38	4	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:39166626	T	G	46	0.152	38	61.053	12.709	7	37.571	3.599	38	7	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:39166626	T	G	34	0.147	29	60.759	12.819	5	36.200	5.215	29	5	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:39166626	T	G	71	0.042	68	63.750	8.952	3	35.667	2.309	68	3	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:39166626	T	G	67	0.060	63	59.778	13.083	4	36.500	2.517	63	4	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:39166626	T	G	60	0.083	55	62.745	10.938	5	36.000	3.000	55	5	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:39166626	T	G	53	0.019	50	63.360	10.279	1	38.000	0.000	50	1	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:39166626	T	NA	64	0	64	63.531	10.652	0	0	0	64	0	TTC21A	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:42751354	T	NA	20	0	20	56.550	12.301	0	0	0	20	0	CCDC13	intronic	NA
RCC_T5--2	chr3:42751354	T	C	20	0.100	18	55.333	12.107	2	35.000	2.828	18	2	CCDC13	intronic	NA
RCC_T5--3	chr3:42751354	T	C	16	0.062	15	57.733	10.606	1	33.000	0.000	15	1	CCDC13	intronic	NA
RCC_T5--4	chr3:42751354	T	NA	28	0	28	54.679	12.022	0	0	0	28	0	CCDC13	intronic	NA
RCC_T5--5	chr3:42751354	T	C	24	0.208	19	52.842	8.235	5	35.400	2.191	19	5	CCDC13	intronic	NA
RCC_T5--6	chr3:42751354	T	C	25	0.040	24	50.375	13.736	1	33.000	0.000	24	1	CCDC13	intronic	NA
RCC_T5--7	chr3:42751354	T	C	17	0.059	16	56.312	10.904	1	33.000	0.000	16	1	CCDC13	intronic	NA
RCC_T5--GL	chr3:42751354	T	NA	33	0	33	53.091	12.648	0	0	0	33	0	CCDC13	intronic	NA
RCC_T5--1	chr3:4354424	G	T	19	0.316	13	61.692	9.928	6	65.333	5.989	13	6	SETMAR	intronic	NA
RCC_T5--2	chr3:4354424	G	T	21	0.190	17	59.824	12.817	4	67.750	1.893	17	4	SETMAR	intronic	NA
RCC_T5--3	chr3:4354424	G	T	25	0.160	21	61.810	13.378	4	53.750	18.228	21	4	SETMAR	intronic	NA
RCC_T5--4	chr3:4354424	G	T	31	0.129	27	62.074	12.866	4	69.750	1.708	27	4	SETMAR	intronic	NA
RCC_T5--5	chr3:4354424	G	T	23	0.217	18	64.000	9.412	5	70.000	1.225	18	5	SETMAR	intronic	NA
RCC_T5--6	chr3:4354424	G	T	36	0.083	33	66.364	6.954	3	53.667	18.877	33	3	SETMAR	intronic	NA
RCC_T5--7	chr3:4354424	G	T	15	0.267	11	63.364	8.880	4	57.750	16.520	11	4	SETMAR	intronic	NA
RCC_T5--GL	chr3:4354424	G	NA	46	0	46	61.043	12.313	0	0	0	46	0	SETMAR	intronic	NA
RCC_T5--1	chr3:48607976	G	A	24	0.125	21	61.095	9.492	3	60.000	6.557	21	3	COL7A1	intronic	NA
RCC_T5--2	chr3:48607976	G	NA	25	0	24	55.875	13.231	0	0	0	24	0	COL7A1	intronic	NA
RCC_T5--3	chr3:48607976	G	NA	24	0	23	56.304	10.460	0	0	0	23	0	COL7A1	intronic	NA
RCC_T5--4	chr3:48607976	G	NA	28	0	28	58.786	12.845	0	0	0	28	0	COL7A1	intronic	NA
RCC_T5--5	chr3:48607976	G	NA	20	0	19	59.474	10.870	0	0	0	19	0	COL7A1	intronic	NA
RCC_T5--6	chr3:48607976	G	NA	28	0	25	60.160	12.529	0	0	0	25	0	COL7A1	intronic	NA
RCC_T5--7	chr3:48607976	G	NA	16	0	16	60.688	9.958	0	0	0	16	0	COL7A1	intronic	NA
RCC_T5--GL	chr3:48607976	G	NA	40	0	40	60.975	10.462	0	0	0	40	0	COL7A1	intronic	NA
RCC_T5--1	chr3:48612826	G	NA	22	0	22	67.091	3.715	0	0	0	22	0	COL7A1	exonic	synonymous_SNV
RCC_T5--2	chr3:48612826	G	NA	15	0	15	60.867	12.455	0	0	0	15	0	COL7A1	exonic	synonymous_SNV
RCC_T5--3	chr3:48612826	G	NA	13	0	13	64.462	10.469	0	0	0	13	0	COL7A1	exonic	synonymous_SNV
RCC_T5--4	chr3:48612826	G	NA	17	0	17	66.471	4.584	0	0	0	17	0	COL7A1	exonic	synonymous_SNV
RCC_T5--5	chr3:48612826	G	NA	20	0	20	66.700	7.987	0	0	0	20	0	COL7A1	exonic	synonymous_SNV
RCC_T5--6	chr3:48612826	G	NA	18	0	18	67.056	4.318	0	0	0	18	0	COL7A1	exonic	synonymous_SNV
RCC_T5--7	chr3:48612826	G	T	10	0.200	8	63.375	9.102	2	69.500	2.121	8	2	COL7A1	exonic	synonymous_SNV
RCC_T5--GL	chr3:48612826	G	NA	49	0	49	67.061	4.105	0	0	0	49	0	COL7A1	exonic	synonymous_SNV
RCC_T5--1	chr3:49042339	C	G	36	0.028	35	64.771	8.247	1	33.000	0.000	35	1	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:49042339	C	NA	21	0	21	67.476	4.423	0	0	0	21	0	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:49042339	C	G	24	0.125	21	63.762	10.945	3	49.000	14.422	21	3	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:49042339	C	G	36	0.028	35	63.686	10.414	1	33.000	0.000	35	1	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:49042339	C	G	39	0.256	29	63.759	8.551	10	39.600	11.266	29	10	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:49042339	C	G	21	0.048	20	65.750	4.266	1	33.000	0.000	20	1	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:49042339	C	NA	21	0	21	66.238	8.240	0	0	0	21	0	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:49042339	C	NA	44	0	44	65.818	7.238	0	0	0	44	0	P4HTM	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:49059940	C	NA	17	0	17	67.118	4.167	0	0	0	17	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:49059940	C	NA	20	0	20	67.050	3.620	0	0	0	20	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:49059940	C	NA	22	0	22	62.364	8.027	0	0	0	22	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:49059940	C	NA	19	0	19	61.947	11.153	0	0	0	19	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:49059940	C	NA	19	0	19	66.421	5.253	0	0	0	19	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:49059940	C	NA	12	0	12	68.250	3.696	0	0	0	12	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:49059940	C	A	11	0.182	9	65.556	5.548	2	65.000	1.414	9	2	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:49059940	C	NA	36	0	36	64.333	8.370	0	0	0	36	0	NDUFAF3	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:49394765	A	C	18	0.056	17	65.529	11.119	1	33.000	0.000	17	1	GPX1	UTR3	NA
RCC_T5--2	chr3:49394765	A	C	25	0.200	20	64.550	11.071	5	41.200	7.014	20	5	GPX1	UTR3	NA
RCC_T5--3	chr3:49394765	A	C	15	0.133	13	62.615	9.579	2	39.500	4.950	13	2	GPX1	UTR3	NA
RCC_T5--4	chr3:49394765	A	C	21	0.048	20	63.150	12.266	1	36.000	0.000	20	1	GPX1	UTR3	NA
RCC_T5--5	chr3:49394765	A	NA	14	0	14	62.071	11.324	0	0	0	14	0	GPX1	UTR3	NA
RCC_T5--6	chr3:49394765	A	NA	14	0	14	66.429	7.377	0	0	0	14	0	GPX1	UTR3	NA
RCC_T5--7	chr3:49394765	A	NA	14	0	14	63.286	13.425	0	0	0	14	0	GPX1	UTR3	NA
RCC_T5--GL	chr3:49394765	A	NA	35	0	35	68.057	4.531	0	0	0	35	0	GPX1	UTR3	NA
RCC_T5--1	chr3:49754014	A	C	24	0.083	21	61.476	8.262	2	35.500	3.536	21	2	RNF123	intronic	NA
RCC_T5--2	chr3:49754014	A	C	16	0.188	13	62.154	6.829	3	41.333	3.512	13	3	RNF123	intronic	NA
RCC_T5--3	chr3:49754014	A	NA	17	0	17	61.647	7.088	0	0	0	17	0	RNF123	intronic	NA
RCC_T5--4	chr3:49754014	A	NA	39	0	39	63.179	6.585	0	0	0	39	0	RNF123	intronic	NA
RCC_T5--5	chr3:49754014	A	C	26	0.038	25	61.400	8.052	1	39.000	0.000	25	1	RNF123	intronic	NA
RCC_T5--6	chr3:49754014	A	NA	18	0	18	63.889	7.194	0	0	0	18	0	RNF123	intronic	NA
RCC_T5--7	chr3:49754014	A	NA	15	0	15	61.000	8.569	0	0	0	15	0	RNF123	intronic	NA
RCC_T5--GL	chr3:49754014	A	NA	56	0	56	60.964	9.870	0	0	0	56	0	RNF123	intronic	NA
RCC_T5--1	chr3:49761102	T	G	22	0.182	18	57.167	11.341	4	33.750	1.500	18	4	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:49761102	T	NA	28	0	28	60.357	8.372	0	0	0	28	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:49761102	T	NA	35	0	35	56.200	12.963	0	0	0	35	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:49761102	T	NA	22	0	22	60.000	11.824	0	0	0	22	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:49761102	T	NA	30	0	30	58.467	12.011	0	0	0	30	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:49761102	T	G	30	0.033	29	59.000	11.152	1	33.000	0.000	29	1	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:49761102	T	NA	13	0	13	64.923	4.071	0	0	0	13	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:49761102	T	NA	42	0	42	63.214	7.608	0	0	0	42	0	GMPPB	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:49764723	A	C	25	0.040	24	54.583	14.826	1	43.000	0.000	24	1	IP6K1	exonic	synonymous_SNV
RCC_T5--2	chr3:49764723	A	NA	25	0	25	60.760	9.679	0	0	0	25	0	IP6K1	exonic	synonymous_SNV
RCC_T5--3	chr3:49764723	A	C	28	0.071	25	54.600	12.359	2	34.500	2.121	25	2	IP6K1	exonic	synonymous_SNV
RCC_T5--4	chr3:49764723	A	C	25	0.040	24	62.042	10.382	1	33.000	0.000	24	1	IP6K1	exonic	synonymous_SNV
RCC_T5--5	chr3:49764723	A	C	31	0.065	28	56.143	13.165	2	36.000	0.000	28	2	IP6K1	exonic	synonymous_SNV
RCC_T5--6	chr3:49764723	A	C	22	0.227	17	54.706	14.508	5	34.200	1.643	17	5	IP6K1	exonic	synonymous_SNV
RCC_T5--7	chr3:49764723	A	NA	15	0	15	59.400	11.861	0	0	0	15	0	IP6K1	exonic	synonymous_SNV
RCC_T5--GL	chr3:49764723	A	NA	41	0	41	61.268	10.330	0	0	0	41	0	IP6K1	exonic	synonymous_SNV
RCC_T5--1	chr3:49898817	A	C	22	0.182	18	62.222	8.461	4	36.000	2.000	18	4	CAMKV	intronic	NA
RCC_T5--2	chr3:49898817	A	NA	32	0	31	58.290	11.040	0	0	0	31	0	CAMKV	intronic	NA
RCC_T5--3	chr3:49898817	A	C	37	0.027	36	58.833	11.269	1	33.000	0.000	36	1	CAMKV	intronic	NA
RCC_T5--4	chr3:49898817	A	C	46	0.022	44	65.432	6.722	1	41.000	0.000	44	1	CAMKV	intronic	NA
RCC_T5--5	chr3:49898817	A	C	28	0.036	27	62.519	7.592	1	39.000	0.000	27	1	CAMKV	intronic	NA
RCC_T5--6	chr3:49898817	A	C	34	0.029	32	60.812	9.786	1	33.000	0.000	32	1	CAMKV	intronic	NA
RCC_T5--7	chr3:49898817	A	NA	35	0	35	61.257	8.793	0	0	0	35	0	CAMKV	intronic	NA
RCC_T5--GL	chr3:49898817	A	NA	67	0	67	61.791	9.853	0	0	0	67	0	CAMKV	intronic	NA
RCC_T5--1	chr3:50339540	A	C	32	0.188	26	57.615	12.952	6	35.333	2.658	26	6	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:50339540	A	NA	37	0	37	57.568	13.240	0	0	0	37	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:50339540	A	NA	36	0	36	59.083	10.266	0	0	0	36	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:50339540	A	NA	46	0	46	62.283	9.222	0	0	0	46	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:50339540	A	NA	26	0	26	57.654	10.639	0	0	0	26	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:50339540	A	C	31	0.032	30	56.500	12.475	1	37.000	0.000	30	1	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:50339540	A	NA	32	0	32	58.062	11.755	0	0	0	32	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:50339540	A	NA	55	0	54	58.870	9.649	0	0	0	54	0	HYAL1	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:5126071	C	NA	25	0	25	62.000	11.266	0	0	0	25	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--2	chr3:5126071	C	NA	26	0	26	68.462	3.808	0	0	0	26	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--3	chr3:5126071	C	NA	20	0	20	68.600	2.780	0	0	0	20	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--4	chr3:5126071	C	A	27	0.037	26	67.654	3.417	1	38.000	0.000	26	1	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--5	chr3:5126071	C	NA	26	0	26	64.846	8.441	0	0	0	26	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--6	chr3:5126071	C	NA	34	0	34	65.206	7.623	0	0	0	34	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--7	chr3:5126071	C	A	13	0.231	10	66.600	6.963	3	68.333	3.215	10	3	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--GL	chr3:5126071	C	NA	50	0	48	67.208	5.842	0	0	0	48	0	BHLHE40(dist=99206),ARL8B(dist=37859)	intergenic	NA
RCC_T5--1	chr3:52441575	G	NA	22	0	22	67.318	4.401	0	0	0	22	0	BAP1	intronic	NA
RCC_T5--2	chr3:52441575	G	NA	15	0	15	69.467	2.924	0	0	0	15	0	BAP1	intronic	NA
RCC_T5--3	chr3:52441575	G	NA	18	0	18	69.889	3.085	0	0	0	18	0	BAP1	intronic	NA
RCC_T5--4	chr3:52441575	G	NA	17	0	17	69.529	3.520	0	0	0	17	0	BAP1	intronic	NA
RCC_T5--5	chr3:52441575	G	NA	15	0	15	67.067	4.114	0	0	0	15	0	BAP1	intronic	NA
RCC_T5--6	chr3:52441575	G	NA	16	0	16	69.125	3.052	0	0	0	16	0	BAP1	intronic	NA
RCC_T5--7	chr3:52441575	G	A	14	0.286	10	66.300	4.523	4	65.500	0.577	10	4	BAP1	intronic	NA
RCC_T5--GL	chr3:52441575	G	NA	37	0	37	67.270	5.305	0	0	0	37	0	BAP1	intronic	NA
RCC_T5--1	chr3:58487366	A	C	25	0.080	23	54.913	11.874	2	34.500	2.121	23	2	KCTD6	UTR3	NA
RCC_T5--2	chr3:58487366	A	C	30	0.067	27	55.667	11.462	2	36.000	4.243	27	2	KCTD6	UTR3	NA
RCC_T5--3	chr3:58487366	A	C	25	0.120	22	55.409	11.108	3	39.000	7.211	22	3	KCTD6	UTR3	NA
RCC_T5--4	chr3:58487366	A	NA	40	0	40	59.875	9.770	0	0	0	40	0	KCTD6	UTR3	NA
RCC_T5--5	chr3:58487366	A	C	29	0.069	27	62.185	6.403	2	33.000	0.000	27	2	KCTD6	UTR3	NA
RCC_T5--6	chr3:58487366	A	C	34	0.176	28	52.286	13.613	6	37.000	5.514	28	6	KCTD6	UTR3	NA
RCC_T5--7	chr3:58487366	A	C	13	0.077	12	58.583	10.022	1	52.000	0.000	12	1	KCTD6	UTR3	NA
RCC_T5--GL	chr3:58487366	A	NA	48	0	47	54.574	12.307	0	0	0	47	0	KCTD6	UTR3	NA
RCC_T5--1	chr3:58510122	T	G	29	0.069	27	56.444	12.157	2	39.000	0.000	27	2	ACOX2	intronic	NA
RCC_T5--2	chr3:58510122	T	G	23	0.174	18	58.167	8.556	4	37.000	0.000	18	4	ACOX2	intronic	NA
RCC_T5--3	chr3:58510122	T	G	47	0.021	46	59.109	9.100	1	43.000	0.000	46	1	ACOX2	intronic	NA
RCC_T5--4	chr3:58510122	T	G	31	0.032	30	57.933	7.794	1	39.000	0.000	30	1	ACOX2	intronic	NA
RCC_T5--5	chr3:58510122	T	NA	30	0	29	57.310	9.529	0	0	0	29	0	ACOX2	intronic	NA
RCC_T5--6	chr3:58510122	T	G	37	0.027	36	60.361	8.229	1	36.000	0.000	36	1	ACOX2	intronic	NA
RCC_T5--7	chr3:58510122	T	G	38	0.026	37	58.135	8.997	1	37.000	0.000	37	1	ACOX2	intronic	NA
RCC_T5--GL	chr3:58510122	T	NA	48	0	47	57.170	10.422	0	0	0	47	0	ACOX2	intronic	NA
RCC_T5--1	chr3:8607200	A	C	43	0.047	40	54.625	11.354	2	37.500	2.121	40	2	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--2	chr3:8607200	A	C	54	0.167	45	53.778	12.508	9	39.667	6.946	45	9	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--3	chr3:8607200	A	C	52	0.096	47	53.872	11.868	5	40.200	8.556	47	5	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--4	chr3:8607200	A	C	53	0.038	50	58.340	10.392	2	35.000	2.828	50	2	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--5	chr3:8607200	A	C	69	0.101	61	56.180	11.025	7	37.143	6.768	61	7	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--6	chr3:8607200	A	C	59	0.085	53	59.925	9.878	5	35.600	2.408	53	5	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--7	chr3:8607200	A	C	47	0.021	46	58.457	9.955	1	36.000	0.000	46	1	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr3:8607200	A	NA	64	0	64	56.422	11.782	0	0	0	64	0	LMCD1	exonic	nonsynonymous_SNV
RCC_T5--1	chr3:9969935	G	NA	38	0	38	61.974	10.178	0	0	0	38	0	IL17RC	intronic	NA
RCC_T5--2	chr3:9969935	G	T	53	0.094	48	64.021	10.218	5	42.400	14.206	48	5	IL17RC	intronic	NA
RCC_T5--3	chr3:9969935	G	T	41	0.098	37	62.135	10.363	4	47.250	17.289	37	4	IL17RC	intronic	NA
RCC_T5--4	chr3:9969935	G	T	39	0.051	37	62.459	8.802	2	50.500	24.749	37	2	IL17RC	intronic	NA
RCC_T5--5	chr3:9969935	G	T	40	0.025	39	60.000	12.081	1	33.000	0.000	39	1	IL17RC	intronic	NA
RCC_T5--6	chr3:9969935	G	T	54	0.037	52	64.462	7.673	2	64.500	0.707	52	2	IL17RC	intronic	NA
RCC_T5--7	chr3:9969935	G	T	29	0.138	25	67.520	3.676	4	59.500	9.110	25	4	IL17RC	intronic	NA
RCC_T5--GL	chr3:9969935	G	NA	77	0	77	63.623	6.837	0	0	0	77	0	IL17RC	intronic	NA
RCC_T5--1	chr4:1018356	A	C	30	0.133	26	56.808	14.447	4	33.750	1.500	26	4	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:1018356	A	C	45	0.244	34	58.029	14.046	11	37.636	10.433	34	11	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:1018356	A	C	39	0.179	32	55.406	13.169	7	35.857	3.579	32	7	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:1018356	A	C	64	0.078	58	56.466	13.227	5	34.600	2.191	58	5	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:1018356	A	C	57	0.088	52	59.385	11.925	5	34.200	1.643	52	5	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:1018356	A	C	40	0.125	35	57.686	12.588	5	38.600	5.128	35	5	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:1018356	A	C	48	0.104	42	57.286	13.145	5	35.000	4.472	42	5	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:1018356	A	NA	51	0	50	55.620	12.090	0	0	0	50	0	FGFRL1	exonic	nonsynonymous_SNV
RCC_T5--1	chr4:103970187	A	T	42	0.167	35	68.486	4.533	7	70.571	2.507	35	7	SLC9B2	intronic	NA
RCC_T5--2	chr4:103970187	A	T	46	0.087	42	68.905	5.169	4	67.750	2.062	42	4	SLC9B2	intronic	NA
RCC_T5--3	chr4:103970187	A	T	49	0.122	43	68.977	3.937	6	66.667	8.430	43	6	SLC9B2	intronic	NA
RCC_T5--4	chr4:103970187	A	T	45	0.111	40	69.500	2.855	5	66.800	3.962	40	5	SLC9B2	intronic	NA
RCC_T5--5	chr4:103970187	A	T	42	0.143	36	66.778	3.921	6	68.500	4.930	36	6	SLC9B2	intronic	NA
RCC_T5--6	chr4:103970187	A	T	58	0.138	50	68.040	5.859	8	68.375	2.925	50	8	SLC9B2	intronic	NA
RCC_T5--7	chr4:103970187	A	T	52	0.269	38	68.763	3.053	14	69.786	2.293	38	14	SLC9B2	intronic	NA
RCC_T5--GL	chr4:103970187	A	NA	76	0	76	69.329	3.218	0	0	0	76	0	SLC9B2	intronic	NA
RCC_T5--1	chr4:104055047	A	T	79	0.165	66	68.015	5.067	13	66.077	4.030	66	13	CENPE	exonic	stopgain_SNV
RCC_T5--2	chr4:104055047	A	T	62	0.145	53	67.585	5.198	9	67.778	4.353	53	9	CENPE	exonic	stopgain_SNV
RCC_T5--3	chr4:104055047	A	T	72	0.125	63	67.444	6.430	9	64.444	10.175	63	9	CENPE	exonic	stopgain_SNV
RCC_T5--4	chr4:104055047	A	T	83	0.169	69	69.449	3.337	14	69.143	2.713	69	14	CENPE	exonic	stopgain_SNV
RCC_T5--5	chr4:104055047	A	T	62	0.177	51	68.471	4.540	11	63.364	8.512	51	11	CENPE	exonic	stopgain_SNV
RCC_T5--6	chr4:104055047	A	T	78	0.090	71	67.352	6.179	7	68.429	2.992	71	7	CENPE	exonic	stopgain_SNV
RCC_T5--7	chr4:104055047	A	T	56	0.286	40	68.675	4.022	16	67.500	5.020	40	16	CENPE	exonic	stopgain_SNV
RCC_T5--GL	chr4:104055047	A	NA	99	0	99	67.980	6.454	0	0	0	99	0	CENPE	exonic	stopgain_SNV
RCC_T5--1	chr4:104511157	G	NA	50	0	50	66.720	6.830	0	0	0	50	0	TACR3	intronic	NA
RCC_T5--2	chr4:104511157	G	NA	61	0	61	66.377	7.893	0	0	0	61	0	TACR3	intronic	NA
RCC_T5--3	chr4:104511157	G	A	52	0.019	51	66.078	7.800	1	39.000	0.000	51	1	TACR3	intronic	NA
RCC_T5--4	chr4:104511157	G	NA	50	0	50	68.120	6.375	0	0	0	50	0	TACR3	intronic	NA
RCC_T5--5	chr4:104511157	G	NA	64	0	64	66.625	6.890	0	0	0	64	0	TACR3	intronic	NA
RCC_T5--6	chr4:104511157	G	NA	61	0	61	67.721	4.428	0	0	0	61	0	TACR3	intronic	NA
RCC_T5--7	chr4:104511157	G	A	38	0.158	31	66.677	4.453	6	66.833	8.954	31	6	TACR3	intronic	NA
RCC_T5--GL	chr4:104511157	G	NA	71	0	71	66.930	6.906	0	0	0	71	0	TACR3	intronic	NA
RCC_T5--1	chr4:104640712	A	C	32	0.094	29	57.966	10.998	3	34.000	1.732	29	3	TACR3	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:104640712	A	NA	27	0	27	62.296	7.770	0	0	0	27	0	TACR3	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:104640712	A	C	24	0.208	19	55.842	11.711	5	42.600	5.177	19	5	TACR3	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:104640712	A	C	28	0.036	27	60.481	9.681	1	36.000	0.000	27	1	TACR3	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:104640712	A	NA	39	0	39	60.026	9.118	0	0	0	39	0	TACR3	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:104640712	A	C	14	0.071	13	54.385	9.518	1	36.000	0.000	13	1	TACR3	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:104640712	A	NA	33	0	33	63.061	7.988	0	0	0	33	0	TACR3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:104640712	A	NA	55	0	55	59.473	10.668	0	0	0	55	0	TACR3	exonic	nonsynonymous_SNV
RCC_T5--1	chr4:10502761	T	G	25	0.200	20	50.800	10.201	5	36.600	2.191	20	5	CLNK	intronic	NA
RCC_T5--2	chr4:10502761	T	G	23	0.087	21	54.524	8.981	2	39.500	4.950	21	2	CLNK	intronic	NA
RCC_T5--3	chr4:10502761	T	G	34	0.118	30	53.867	9.175	4	38.750	4.193	30	4	CLNK	intronic	NA
RCC_T5--4	chr4:10502761	T	G	25	0.040	24	60.000	7.813	1	37.000	0.000	24	1	CLNK	intronic	NA
RCC_T5--5	chr4:10502761	T	G	30	0.033	27	57.741	8.882	1	46.000	0.000	27	1	CLNK	intronic	NA
RCC_T5--6	chr4:10502761	T	G	25	0.120	22	56.273	10.077	3	42.667	8.145	22	3	CLNK	intronic	NA
RCC_T5--7	chr4:10502761	T	NA	27	0	27	54.556	10.871	0	0	0	27	0	CLNK	intronic	NA
RCC_T5--GL	chr4:10502761	T	NA	38	0	38	52.947	10.227	0	0	0	38	0	CLNK	intronic	NA
RCC_T5--1	chr4:119237398	C	NA	121	0	121	65.661	7.895	0	0	0	121	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:119237398	C	NA	119	0	118	67.008	7.234	0	0	0	118	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:119237398	C	G	125	0.112	111	67.045	6.257	14	69.143	3.060	111	14	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:119237398	C	NA	140	0	140	68.214	5.038	0	0	0	140	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:119237398	C	NA	123	0	123	67.333	4.790	0	0	0	123	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:119237398	C	NA	127	0	127	67.228	6.395	0	0	0	127	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:119237398	C	NA	123	0	123	67.821	4.743	0	0	0	123	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:119237398	C	NA	172	0	170	67.771	5.592	0	0	0	170	0	PRSS12	exonic	nonsynonymous_SNV
RCC_T5--1	chr4:123945460	A	C	34	0.029	21	64.476	9.282	1	68.000	0.000	21	1	SPATA5	intronic	NA
RCC_T5--2	chr4:123945460	A	C	33	0.121	12	68.667	4.228	4	66.500	1.732	12	4	SPATA5	intronic	NA
RCC_T5--3	chr4:123945460	A	C	31	0.032	17	67.294	6.527	1	68.000	0.000	17	1	SPATA5	intronic	NA
RCC_T5--4	chr4:123945460	A	C	41	0.024	21	67.190	3.530	1	71.000	0.000	21	1	SPATA5	intronic	NA
RCC_T5--5	chr4:123945460	A	C	37	0.027	16	66.875	5.875	1	62.000	0.000	16	1	SPATA5	intronic	NA
RCC_T5--6	chr4:123945460	A	C	30	0.033	17	67.353	5.291	1	68.000	0.000	17	1	SPATA5	intronic	NA
RCC_T5--7	chr4:123945460	A	C	36	0.028	18	64.500	9.243	1	65.000	0.000	18	1	SPATA5	intronic	NA
RCC_T5--GL	chr4:123945460	A	NA	61	0	43	67.767	5.028	0	0	0	43	0	SPATA5	intronic	NA
RCC_T5--1	chr4:144617633	A	C	156	0.179	128	67.227	5.323	28	67.286	4.569	128	28	FREM3	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:144617633	A	C	153	0.163	128	67.500	5.297	25	68.840	3.037	128	25	FREM3	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:144617633	A	C	166	0.187	135	67.689	6.080	31	67.419	4.448	135	31	FREM3	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:144617633	A	C	184	0.125	161	67.932	6.839	23	69.304	2.305	161	23	FREM3	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:144617633	A	C	186	0.220	145	67.234	5.552	41	69.463	3.828	145	41	FREM3	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:144617633	A	C	154	0.104	138	68.094	5.348	16	68.812	4.694	138	16	FREM3	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:144617633	A	C	146	0.288	104	68.519	4.672	42	68.190	4.357	104	42	FREM3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:144617633	A	NA	221	0	221	67.846	6.039	0	0	0	221	0	FREM3	exonic	nonsynonymous_SNV
RCC_T5--1	chr4:154236504	T	G	18	0.222	13	57.385	9.691	4	42.500	5.508	13	4	TRIM2	intronic	NA
RCC_T5--2	chr4:154236504	T	NA	26	0	25	57.440	7.901	0	0	0	25	0	TRIM2	intronic	NA
RCC_T5--3	chr4:154236504	T	G	29	0.069	26	52.038	9.102	2	36.500	0.707	26	2	TRIM2	intronic	NA
RCC_T5--4	chr4:154236504	T	NA	33	0	33	59.485	7.791	0	0	0	33	0	TRIM2	intronic	NA
RCC_T5--5	chr4:154236504	T	G	23	0.087	21	56.952	9.942	2	35.000	2.828	21	2	TRIM2	intronic	NA
RCC_T5--6	chr4:154236504	T	G	36	0.028	35	55.029	10.222	1	37.000	0.000	35	1	TRIM2	intronic	NA
RCC_T5--7	chr4:154236504	T	G	33	0.061	30	57.667	8.711	2	36.000	4.243	30	2	TRIM2	intronic	NA
RCC_T5--GL	chr4:154236504	T	NA	48	0	47	58.085	8.849	0	0	0	47	0	TRIM2	intronic	NA
RCC_T5--1	chr4:156716663	G	A	97	0.216	76	68.697	3.510	21	66.095	8.972	76	21	GUCY1B3	intronic	NA
RCC_T5--2	chr4:156716663	G	A	91	0.121	80	68.062	6.732	11	69.818	1.991	80	11	GUCY1B3	intronic	NA
RCC_T5--3	chr4:156716663	G	A	101	0.149	86	67.244	5.117	15	69.200	2.704	86	15	GUCY1B3	intronic	NA
RCC_T5--4	chr4:156716663	G	A	108	0.111	96	68.521	4.597	12	69.500	2.355	96	12	GUCY1B3	intronic	NA
RCC_T5--5	chr4:156716663	G	A	94	0.202	75	67.320	4.924	19	68.000	5.228	75	19	GUCY1B3	intronic	NA
RCC_T5--6	chr4:156716663	G	A	85	0.094	77	68.091	5.398	8	69.875	3.399	77	8	GUCY1B3	intronic	NA
RCC_T5--7	chr4:156716663	G	A	92	0.315	63	68.968	4.711	29	68.103	5.753	63	29	GUCY1B3	intronic	NA
RCC_T5--GL	chr4:156716663	G	NA	128	0	128	68.469	4.045	0	0	0	128	0	GUCY1B3	intronic	NA
RCC_T5--1	chr4:1807217	G	NA	36	0	36	61.333	10.894	0	0	0	36	0	FGFR3	intronic	NA
RCC_T5--2	chr4:1807217	G	NA	31	0	31	67.226	2.997	0	0	0	31	0	FGFR3	intronic	NA
RCC_T5--3	chr4:1807217	G	NA	31	0	31	66.290	7.372	0	0	0	31	0	FGFR3	intronic	NA
RCC_T5--4	chr4:1807217	G	A	31	0.129	27	65.593	7.702	4	48.750	16.378	27	4	FGFR3	intronic	NA
RCC_T5--5	chr4:1807217	G	NA	29	0	29	63.310	8.561	0	0	0	29	0	FGFR3	intronic	NA
RCC_T5--6	chr4:1807217	G	NA	34	0	34	65.765	4.818	0	0	0	34	0	FGFR3	intronic	NA
RCC_T5--7	chr4:1807217	G	NA	33	0	33	65.152	5.783	0	0	0	33	0	FGFR3	intronic	NA
RCC_T5--GL	chr4:1807217	G	NA	50	0	50	65.020	6.772	0	0	0	50	0	FGFR3	intronic	NA
RCC_T5--1	chr4:1807765	A	C	24	0.042	23	55.522	8.759	1	39.000	0.000	23	1	FGFR3	intronic	NA
RCC_T5--2	chr4:1807765	A	NA	31	0	31	57.871	9.128	0	0	0	31	0	FGFR3	intronic	NA
RCC_T5--3	chr4:1807765	A	NA	22	0	21	58.000	11.086	0	0	0	21	0	FGFR3	intronic	NA
RCC_T5--4	chr4:1807765	A	C	17	0.176	14	61.500	11.257	3	38.000	1.732	14	3	FGFR3	intronic	NA
RCC_T5--5	chr4:1807765	A	C	30	0.067	28	57.393	11.275	2	36.500	0.707	28	2	FGFR3	intronic	NA
RCC_T5--6	chr4:1807765	A	NA	21	0	21	58.095	13.225	0	0	0	21	0	FGFR3	intronic	NA
RCC_T5--7	chr4:1807765	A	C	21	0.048	20	62.050	8.959	1	36.000	0.000	20	1	FGFR3	intronic	NA
RCC_T5--GL	chr4:1807765	A	NA	35	0	35	57.086	11.716	0	0	0	35	0	FGFR3	intronic	NA
RCC_T5--1	chr4:184175231	G	T	52	0.231	40	67.500	6.786	12	68.583	3.088	40	12	WWC2	intronic	NA
RCC_T5--2	chr4:184175231	G	T	47	0.255	35	67.286	7.517	12	68.917	6.230	35	12	WWC2	intronic	NA
RCC_T5--3	chr4:184175231	G	T	48	0.167	40	66.700	7.290	8	66.500	3.251	40	8	WWC2	intronic	NA
RCC_T5--4	chr4:184175231	G	T	58	0.207	46	68.761	4.040	12	68.000	3.668	46	12	WWC2	intronic	NA
RCC_T5--5	chr4:184175231	G	T	47	0.149	40	68.075	3.555	7	68.857	3.579	40	7	WWC2	intronic	NA
RCC_T5--6	chr4:184175231	G	T	41	0.171	34	68.824	3.778	7	69.857	2.911	34	7	WWC2	intronic	NA
RCC_T5--7	chr4:184175231	G	T	40	0.375	25	68.560	3.731	15	68.000	5.782	25	15	WWC2	intronic	NA
RCC_T5--GL	chr4:184175231	G	NA	76	0	76	69.500	3.004	0	0	0	76	0	WWC2	intronic	NA
RCC_T5--1	chr4:2306589	A	C	27	0.037	26	58.231	14.610	1	36.000	0.000	26	1	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:2306589	A	C	31	0.032	30	63.833	8.875	1	39.000	0.000	30	1	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:2306589	A	C	27	0.185	22	58.818	12.447	5	36.800	4.919	22	5	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:2306589	A	C	31	0.129	27	60.963	10.722	4	34.750	2.062	27	4	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:2306589	A	C	53	0.075	49	59.020	11.949	4	40.750	4.500	49	4	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:2306589	A	C	29	0.172	24	60.500	10.714	5	37.200	7.823	24	5	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:2306589	A	C	38	0.079	32	59.000	11.138	3	34.333	2.309	32	3	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:2306589	A	NA	41	0	41	58.854	11.676	0	0	0	41	0	ZFYVE28	exonic	nonsynonymous_SNV
RCC_T5--1	chr4:40809356	T	A	21	0.190	17	60.176	9.812	4	40.500	8.103	17	4	NSUN7	intronic	NA
RCC_T5--2	chr4:40809356	T	NA	20	0	20	62.950	9.687	0	0	0	20	0	NSUN7	intronic	NA
RCC_T5--3	chr4:40809356	T	A	25	0.080	23	59.174	11.040	2	33.000	0.000	23	2	NSUN7	intronic	NA
RCC_T5--4	chr4:40809356	T	A	43	0.023	42	60.095	11.177	1	38.000	0.000	42	1	NSUN7	intronic	NA
RCC_T5--5	chr4:40809356	T	A	24	0.042	23	61.696	9.281	1	38.000	0.000	23	1	NSUN7	intronic	NA
RCC_T5--6	chr4:40809356	T	A	20	0.100	18	63.278	9.304	2	38.000	0.000	18	2	NSUN7	intronic	NA
RCC_T5--7	chr4:40809356	T	NA	21	0	21	59.286	13.875	0	0	0	21	0	NSUN7	intronic	NA
RCC_T5--GL	chr4:40809356	T	NA	43	0	43	60.837	12.146	0	0	0	43	0	NSUN7	intronic	NA
RCC_T5--1	chr4:41749629	A	NA	23	0	23	54.783	13.528	0	0	0	23	0	PHOX2B	intronic	NA
RCC_T5--2	chr4:41749629	A	C	19	0.053	18	60.556	11.470	1	33.000	0.000	18	1	PHOX2B	intronic	NA
RCC_T5--3	chr4:41749629	A	NA	12	0	10	55.700	10.531	0	0	0	10	0	PHOX2B	intronic	NA
RCC_T5--4	chr4:41749629	A	NA	18	0	18	61.222	9.944	0	0	0	18	0	PHOX2B	intronic	NA
RCC_T5--5	chr4:41749629	A	C	17	0.118	15	53.933	12.736	2	35.500	3.536	15	2	PHOX2B	intronic	NA
RCC_T5--6	chr4:41749629	A	C	11	0.273	8	58.750	8.908	3	34.667	2.887	8	3	PHOX2B	intronic	NA
RCC_T5--7	chr4:41749629	A	NA	11	0	11	60.273	5.968	0	0	0	11	0	PHOX2B	intronic	NA
RCC_T5--GL	chr4:41749629	A	NA	34	0	34	60.029	10.953	0	0	0	34	0	PHOX2B	intronic	NA
RCC_T5--1	chr4:5448345	T	NA	20	0	19	55.684	11.809	0	0	0	19	0	STK32B	intronic	NA
RCC_T5--2	chr4:5448345	T	G	19	0.053	18	58.722	9.467	1	36.000	0.000	18	1	STK32B	intronic	NA
RCC_T5--3	chr4:5448345	T	G	13	0.154	11	58.818	8.727	2	34.500	2.121	11	2	STK32B	intronic	NA
RCC_T5--4	chr4:5448345	T	G	20	0.100	18	56.500	9.488	2	34.500	2.121	18	2	STK32B	intronic	NA
RCC_T5--5	chr4:5448345	T	G	24	0.125	20	53.600	11.306	3	35.000	1.732	20	3	STK32B	intronic	NA
RCC_T5--6	chr4:5448345	T	G	20	0.150	17	56.412	10.595	3	38.333	6.110	17	3	STK32B	intronic	NA
RCC_T5--7	chr4:5448345	T	G	19	0.368	12	60.500	11.805	7	35.571	1.813	12	7	STK32B	intronic	NA
RCC_T5--GL	chr4:5448345	T	NA	33	0	33	56.879	9.943	0	0	0	33	0	STK32B	intronic	NA
RCC_T5--1	chr4:56336830	A	G	107	0.178	88	66.682	6.679	19	66.105	9.695	88	19	CLOCK	intronic	NA
RCC_T5--2	chr4:56336830	A	G	128	0.211	101	68.782	3.741	27	67.778	3.412	101	27	CLOCK	intronic	NA
RCC_T5--3	chr4:56336830	A	G	105	0.190	85	67.976	5.273	20	68.550	3.620	85	20	CLOCK	intronic	NA
RCC_T5--4	chr4:56336830	A	G	119	0.109	106	68.151	5.173	13	70.000	3.651	106	13	CLOCK	intronic	NA
RCC_T5--5	chr4:56336830	A	G	127	0.150	108	68.611	3.437	19	68.421	3.405	108	19	CLOCK	intronic	NA
RCC_T5--6	chr4:56336830	A	G	132	0.174	109	68.826	3.344	23	68.609	2.935	109	23	CLOCK	intronic	NA
RCC_T5--7	chr4:56336830	A	G	114	0.351	74	68.770	3.160	40	68.825	3.396	74	40	CLOCK	intronic	NA
RCC_T5--GL	chr4:56336830	A	NA	195	0	195	68.431	4.148	0	0	0	195	0	CLOCK	intronic	NA
RCC_T5--1	chr4:77661997	A	C	22	0.182	18	56.833	11.252	4	36.500	2.517	18	4	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--2	chr4:77661997	A	C	22	0.182	18	60.333	8.758	4	35.500	1.732	18	4	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--3	chr4:77661997	A	C	24	0.167	19	59.947	10.108	4	33.750	1.500	19	4	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--4	chr4:77661997	A	NA	20	0	20	58.500	7.729	0	0	0	20	0	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--5	chr4:77661997	A	C	37	0.027	36	57.306	9.841	1	39.000	0.000	36	1	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--6	chr4:77661997	A	C	22	0.045	21	53.190	11.686	1	39.000	0.000	21	1	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--7	chr4:77661997	A	C	17	0.059	16	59.250	9.581	1	37.000	0.000	16	1	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr4:77661997	A	NA	35	0	35	60.057	8.426	0	0	0	35	0	SHROOM3	exonic	nonsynonymous_SNV
RCC_T5--1	chr5:112379314	G	NA	22	0	22	62.636	11.834	0	0	0	22	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--2	chr5:112379314	G	NA	39	0	39	65.436	7.380	0	0	0	39	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--3	chr5:112379314	G	NA	34	0	34	63.059	10.974	0	0	0	34	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--4	chr5:112379314	G	A	34	0.118	30	64.600	11.028	4	65.750	2.754	30	4	MCC	exonic	nonsynonymous_SNV
RCC_T5--5	chr5:112379314	G	NA	36	0	36	65.861	7.809	0	0	0	36	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--6	chr5:112379314	G	NA	21	0	21	65.619	9.421	0	0	0	21	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--7	chr5:112379314	G	NA	23	0	23	67.391	3.551	0	0	0	23	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--GL	chr5:112379314	G	NA	36	0	36	67.222	4.952	0	0	0	36	0	MCC	exonic	nonsynonymous_SNV
RCC_T5--1	chr5:137844380	C	A	373	0.166	311	66.257	6.944	62	66.952	6.245	311	62	ETF1	exonic	synonymous_SNV
RCC_T5--2	chr5:137844380	C	A	460	0.126	402	67.475	6.336	58	67.483	4.828	402	58	ETF1	exonic	synonymous_SNV
RCC_T5--3	chr5:137844380	C	A	397	0.141	341	67.534	5.777	56	68.286	5.098	341	56	ETF1	exonic	synonymous_SNV
RCC_T5--4	chr5:137844380	C	A	410	0.127	358	68.179	4.490	52	68.692	3.562	358	52	ETF1	exonic	synonymous_SNV
RCC_T5--5	chr5:137844380	C	A	403	0.166	336	67.818	5.290	67	69.149	3.395	336	67	ETF1	exonic	synonymous_SNV
RCC_T5--6	chr5:137844380	C	A	363	0.129	316	67.459	5.569	47	68.447	4.298	316	47	ETF1	exonic	synonymous_SNV
RCC_T5--7	chr5:137844380	C	A	459	0.209	363	67.846	4.652	96	68.469	5.384	363	96	ETF1	exonic	synonymous_SNV
RCC_T5--GL	chr5:137844380	C	NA	455	0	455	68.145	3.994	0	0	0	455	0	ETF1	exonic	synonymous_SNV
RCC_T5--1	chr5:147554999	T	C	31	0.032	17	63.412	10.577	1	65.000	0.000	17	1	SPINK14	downstream	NA
RCC_T5--2	chr5:147554999	T	C	38	0.079	21	67.190	4.214	3	64.000	1.732	21	3	SPINK14	downstream	NA
RCC_T5--3	chr5:147554999	T	C	36	0.083	26	68.154	2.781	3	65.000	3.000	26	3	SPINK14	downstream	NA
RCC_T5--4	chr5:147554999	T	C	25	0.200	15	68.800	2.957	5	59.800	7.463	15	5	SPINK14	downstream	NA
RCC_T5--5	chr5:147554999	T	C	21	0.190	10	68.900	2.961	4	64.500	2.082	10	4	SPINK14	downstream	NA
RCC_T5--6	chr5:147554999	T	C	24	0.167	14	67.500	3.299	4	58.250	16.879	14	4	SPINK14	downstream	NA
RCC_T5--7	chr5:147554999	T	C	38	0.026	23	66.870	4.605	1	67.000	0.000	23	1	SPINK14	downstream	NA
RCC_T5--GL	chr5:147554999	T	NA	42	0	33	68.212	3.706	0	0	0	33	0	SPINK14	downstream	NA
RCC_T5--1	chr5:150413226	A	G	33	0.061	31	48.548	10.285	2	33.000	0.000	31	2	TNIP1	exonic	synonymous_SNV
RCC_T5--2	chr5:150413226	A	G	24	0.083	22	44.500	9.205	2	42.500	9.192	22	2	TNIP1	exonic	synonymous_SNV
RCC_T5--3	chr5:150413226	A	G	25	0.080	23	49.000	9.429	2	38.000	7.071	23	2	TNIP1	exonic	synonymous_SNV
RCC_T5--4	chr5:150413226	A	G	46	0.022	45	50.400	7.750	1	36.000	0.000	45	1	TNIP1	exonic	synonymous_SNV
RCC_T5--5	chr5:150413226	A	G	48	0.062	45	53.289	7.418	3	36.333	0.577	45	3	TNIP1	exonic	synonymous_SNV
RCC_T5--6	chr5:150413226	A	G	24	0.250	18	47.944	10.224	6	36.833	3.312	18	6	TNIP1	exonic	synonymous_SNV
RCC_T5--7	chr5:150413226	A	G	53	0.019	52	46.558	10.725	1	36.000	0.000	52	1	TNIP1	exonic	synonymous_SNV
RCC_T5--GL	chr5:150413226	A	NA	41	0	41	51.951	7.861	0	0	0	41	0	TNIP1	exonic	synonymous_SNV
RCC_T5--1	chr5:150413233	T	G	31	0.097	28	53.250	9.868	3	36.333	5.774	28	3	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--2	chr5:150413233	T	G	29	0.172	24	50.125	10.812	5	40.600	7.668	24	5	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--3	chr5:150413233	T	G	28	0.179	23	48.957	10.768	5	34.200	1.643	23	5	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--4	chr5:150413233	T	G	47	0.021	46	50.326	10.433	1	36.000	0.000	46	1	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--5	chr5:150413233	T	G	51	0.059	46	51.130	11.081	3	36.000	0.000	46	3	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--6	chr5:150413233	T	G	28	0.036	26	54.269	10.502	1	36.000	0.000	26	1	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--7	chr5:150413233	T	G	54	0.056	50	49.460	11.174	3	34.000	1.732	50	3	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr5:150413233	T	NA	47	0	46	53.022	10.701	0	0	0	46	0	TNIP1	exonic	nonsynonymous_SNV
RCC_T5--1	chr5:167887641	C	NA	45	0	45	64.800	9.114	0	0	0	45	0	WWC1	intronic	NA
RCC_T5--2	chr5:167887641	C	NA	41	0	41	66.854	6.784	0	0	0	41	0	WWC1	intronic	NA
RCC_T5--3	chr5:167887641	C	NA	32	0	32	65.281	9.689	0	0	0	32	0	WWC1	intronic	NA
RCC_T5--4	chr5:167887641	C	A	31	0.129	27	68.407	2.978	4	68.750	3.202	27	4	WWC1	intronic	NA
RCC_T5--5	chr5:167887641	C	NA	38	0	38	67.579	6.492	0	0	0	38	0	WWC1	intronic	NA
RCC_T5--6	chr5:167887641	C	NA	40	0	40	68.175	4.107	0	0	0	40	0	WWC1	intronic	NA
RCC_T5--7	chr5:167887641	C	NA	45	0	45	67.044	6.588	0	0	0	45	0	WWC1	intronic	NA
RCC_T5--GL	chr5:167887641	C	NA	61	0	61	67.049	5.912	0	0	0	61	0	WWC1	intronic	NA
RCC_T5--1	chr5:176024057	C	NA	34	0	33	57.545	13.055	0	0	0	33	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--2	chr5:176024057	C	NA	22	0	22	62.955	11.004	0	0	0	22	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--3	chr5:176024057	C	NA	41	0	41	61.829	10.677	0	0	0	41	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--4	chr5:176024057	C	T	28	0.143	24	66.375	3.561	4	53.000	14.697	24	4	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--5	chr5:176024057	C	NA	48	0	48	63.458	7.418	0	0	0	48	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--6	chr5:176024057	C	NA	25	0	25	66.480	7.736	0	0	0	25	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--7	chr5:176024057	C	NA	40	0	40	61.700	9.244	0	0	0	40	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr5:176024057	C	NA	40	0	39	64.487	5.553	0	0	0	39	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T5--1	chr5:180218632	T	G	44	0.091	40	58.450	10.325	4	34.000	2.000	40	4	MGAT1	UTR3	NA
RCC_T5--2	chr5:180218632	T	G	40	0.200	31	60.452	9.933	8	36.125	3.944	31	8	MGAT1	UTR3	NA
RCC_T5--3	chr5:180218632	T	G	42	0.071	39	59.564	11.440	3	35.333	2.082	39	3	MGAT1	UTR3	NA
RCC_T5--4	chr5:180218632	T	G	48	0.062	43	57.930	11.132	3	36.667	0.577	43	3	MGAT1	UTR3	NA
RCC_T5--5	chr5:180218632	T	G	53	0.019	52	56.423	12.597	1	49.000	0.000	52	1	MGAT1	UTR3	NA
RCC_T5--6	chr5:180218632	T	G	30	0.100	27	58.741	12.359	3	35.333	2.082	27	3	MGAT1	UTR3	NA
RCC_T5--7	chr5:180218632	T	NA	41	0	40	58.075	9.986	0	0	0	40	0	MGAT1	UTR3	NA
RCC_T5--GL	chr5:180218632	T	NA	33	0	33	59.242	9.539	0	0	0	33	0	MGAT1	UTR3	NA
RCC_T5--1	chr5:52856427	G	T	27	0.111	24	52.750	13.251	3	35.000	3.464	24	3	NDUFS4	upstream	NA
RCC_T5--2	chr5:52856427	G	T	35	0.200	28	56.464	9.697	7	33.000	0.000	28	7	NDUFS4	upstream	NA
RCC_T5--3	chr5:52856427	G	T	36	0.111	32	52.312	12.390	4	38.750	7.588	32	4	NDUFS4	upstream	NA
RCC_T5--4	chr5:52856427	G	NA	42	0	42	58.714	9.796	0	0	0	42	0	NDUFS4	upstream	NA
RCC_T5--5	chr5:52856427	G	NA	35	0	35	52.400	12.519	0	0	0	35	0	NDUFS4	upstream	NA
RCC_T5--6	chr5:52856427	G	NA	26	0	26	52.731	12.808	0	0	0	26	0	NDUFS4	upstream	NA
RCC_T5--7	chr5:52856427	G	T	30	0.067	28	57.929	8.907	2	36.500	4.950	28	2	NDUFS4	upstream	NA
RCC_T5--GL	chr5:52856427	G	NA	34	0	34	61.853	7.131	0	0	0	34	0	NDUFS4	upstream	NA
RCC_T5--1	chr5:65058924	G	NA	116	0	115	67.096	6.752	0	0	0	115	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--2	chr5:65058924	G	NA	130	0	130	68.169	4.692	0	0	0	130	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--3	chr5:65058924	G	NA	106	0	105	67.438	6.371	0	0	0	105	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--4	chr5:65058924	G	NA	141	0	141	68.390	4.675	0	0	0	141	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--5	chr5:65058924	G	NA	114	0	114	67.982	4.160	0	0	0	114	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--6	chr5:65058924	G	NA	112	0	112	67.607	4.281	0	0	0	112	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--7	chr5:65058924	G	A	131	0.176	108	67.398	6.351	23	69.565	2.777	108	23	NLN	exonic	nonsynonymous_SNV
RCC_T5--GL	chr5:65058924	G	NA	154	0	153	68.052	5.546	0	0	0	153	0	NLN	exonic	nonsynonymous_SNV
RCC_T5--1	chr5:78610487	A	T	11	0.273	8	61.000	9.289	3	61.000	2.000	8	3	JMY	exonic	synonymous_SNV
RCC_T5--2	chr5:78610487	A	T	19	0.053	18	60.556	10.788	1	33.000	0.000	18	1	JMY	exonic	synonymous_SNV
RCC_T5--3	chr5:78610487	A	NA	24	0	23	55.826	10.857	0	0	0	23	0	JMY	exonic	synonymous_SNV
RCC_T5--4	chr5:78610487	A	NA	30	0	29	61.552	10.239	0	0	0	29	0	JMY	exonic	synonymous_SNV
RCC_T5--5	chr5:78610487	A	NA	24	0	24	61.792	10.471	0	0	0	24	0	JMY	exonic	synonymous_SNV
RCC_T5--6	chr5:78610487	A	NA	17	0	17	58.941	11.971	0	0	0	17	0	JMY	exonic	synonymous_SNV
RCC_T5--7	chr5:78610487	A	NA	15	0	15	58.667	13.086	0	0	0	15	0	JMY	exonic	synonymous_SNV
RCC_T5--GL	chr5:78610487	A	NA	35	0	35	59.371	12.252	0	0	0	35	0	JMY	exonic	synonymous_SNV
RCC_T5--1	chr5:79442221	A	NA	33	0	33	54.212	9.675	0	0	0	33	0	SERINC5	intronic	NA
RCC_T5--2	chr5:79442221	A	C	31	0.161	26	52.000	9.143	5	38.800	0.447	26	5	SERINC5	intronic	NA
RCC_T5--3	chr5:79442221	A	C	41	0.024	39	54.077	8.907	1	47.000	0.000	39	1	SERINC5	intronic	NA
RCC_T5--4	chr5:79442221	A	NA	36	0	35	58.629	8.384	0	0	0	35	0	SERINC5	intronic	NA
RCC_T5--5	chr5:79442221	A	NA	32	0	32	56.156	8.733	0	0	0	32	0	SERINC5	intronic	NA
RCC_T5--6	chr5:79442221	A	NA	31	0	31	55.387	7.297	0	0	0	31	0	SERINC5	intronic	NA
RCC_T5--7	chr5:79442221	A	NA	20	0	20	55.450	8.971	0	0	0	20	0	SERINC5	intronic	NA
RCC_T5--GL	chr5:79442221	A	NA	74	0	74	55.108	9.856	0	0	0	74	0	SERINC5	intronic	NA
RCC_T5--1	chr6:111208646	T	C	69	0.130	59	66.712	4.379	9	68.667	3.240	59	9	AMD1	intronic	NA
RCC_T5--2	chr6:111208646	T	C	79	0.127	69	66.841	5.900	10	69.300	3.860	69	10	AMD1	intronic	NA
RCC_T5--3	chr6:111208646	T	C	87	0.103	76	66.553	5.553	9	70.111	1.691	76	9	AMD1	intronic	NA
RCC_T5--4	chr6:111208646	T	C	98	0.173	81	67.494	5.163	17	68.824	3.187	81	17	AMD1	intronic	NA
RCC_T5--5	chr6:111208646	T	C	66	0.076	61	67.000	3.979	5	68.400	3.286	61	5	AMD1	intronic	NA
RCC_T5--6	chr6:111208646	T	C	83	0.145	71	66.563	5.384	12	68.250	4.654	71	12	AMD1	intronic	NA
RCC_T5--7	chr6:111208646	T	C	70	0.214	55	67.291	4.104	15	67.533	5.012	55	15	AMD1	intronic	NA
RCC_T5--GL	chr6:111208646	T	NA	161	0	161	67.714	3.643	0	0	0	161	0	AMD1	intronic	NA
RCC_T5--1	chr6:117898755	T	A	13	0.077	12	68.250	4.309	1	72.000	0.000	12	1	GOPC	intronic	NA
RCC_T5--2	chr6:117898755	T	A	21	0.048	20	67.450	5.960	1	72.000	0.000	20	1	GOPC	intronic	NA
RCC_T5--3	chr6:117898755	T	A	33	0.212	26	67.846	7.220	7	69.714	4.786	26	7	GOPC	intronic	NA
RCC_T5--4	chr6:117898755	T	A	30	0.133	26	68.000	6.286	4	71.750	0.500	26	4	GOPC	intronic	NA
RCC_T5--5	chr6:117898755	T	A	16	0.188	13	66.000	10.296	3	68.667	4.933	13	3	GOPC	intronic	NA
RCC_T5--6	chr6:117898755	T	A	24	0.250	18	69.611	2.873	6	71.500	1.225	18	6	GOPC	intronic	NA
RCC_T5--7	chr6:117898755	T	A	10	0.400	6	67.667	6.314	4	68.000	4.899	6	4	GOPC	intronic	NA
RCC_T5--GL	chr6:117898755	T	NA	33	0	33	69.576	3.052	0	0	0	33	0	GOPC	intronic	NA
RCC_T5--1	chr6:146254110	A	C	33	0.152	28	60.464	10.083	5	56.800	14.061	28	5	SHPRH	intronic	NA
RCC_T5--2	chr6:146254110	A	C	25	0.040	24	63.250	5.929	1	60.000	0.000	24	1	SHPRH	intronic	NA
RCC_T5--3	chr6:146254110	A	NA	36	0	36	60.583	10.294	0	0	0	36	0	SHPRH	intronic	NA
RCC_T5--4	chr6:146254110	A	C	35	0.057	33	63.242	6.114	2	60.500	7.778	33	2	SHPRH	intronic	NA
RCC_T5--5	chr6:146254110	A	C	33	0.030	32	61.438	8.470	1	66.000	0.000	32	1	SHPRH	intronic	NA
RCC_T5--6	chr6:146254110	A	NA	40	0	40	60.500	8.907	0	0	0	40	0	SHPRH	intronic	NA
RCC_T5--7	chr6:146254110	A	NA	30	0	30	62.433	7.347	0	0	0	30	0	SHPRH	intronic	NA
RCC_T5--GL	chr6:146254110	A	NA	39	0	39	60.692	8.721	0	0	0	39	0	SHPRH	intronic	NA
RCC_T5--1	chr6:15487673	A	C	52	0.096	47	53.596	13.199	5	36.800	5.357	47	5	JARID2	exonic	nonsynonymous_SNV
RCC_T5--2	chr6:15487673	A	C	58	0.103	49	53.898	12.125	6	35.000	1.549	49	6	JARID2	exonic	nonsynonymous_SNV
RCC_T5--3	chr6:15487673	A	C	35	0.171	29	52.793	13.083	6	37.833	4.167	29	6	JARID2	exonic	nonsynonymous_SNV
RCC_T5--4	chr6:15487673	A	C	37	0.027	35	52.886	13.798	1	36.000	0.000	35	1	JARID2	exonic	nonsynonymous_SNV
RCC_T5--5	chr6:15487673	A	C	64	0.016	63	51.683	12.671	1	36.000	0.000	63	1	JARID2	exonic	nonsynonymous_SNV
RCC_T5--6	chr6:15487673	A	C	35	0.143	29	53.931	12.934	5	35.400	1.342	29	5	JARID2	exonic	nonsynonymous_SNV
RCC_T5--7	chr6:15487673	A	C	55	0.055	50	52.680	12.525	3	35.000	1.732	50	3	JARID2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr6:15487673	A	NA	62	0	61	54.557	11.348	0	0	0	61	0	JARID2	exonic	nonsynonymous_SNV
RCC_T5--1	chr6:155597478	A	G	121	0.289	86	66.477	7.077	35	63.600	12.132	86	35	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--2	chr6:155597478	A	G	106	0.104	95	67.895	6.229	11	65.545	11.193	95	11	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--3	chr6:155597478	A	G	131	0.137	113	67.345	4.825	18	68.444	3.148	113	18	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--4	chr6:155597478	A	G	136	0.132	118	67.627	6.196	18	66.944	3.019	118	18	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--5	chr6:155597478	A	G	99	0.212	78	66.769	6.353	21	63.905	9.659	78	21	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--6	chr6:155597478	A	G	91	0.198	73	67.932	4.843	18	67.111	8.798	73	18	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--7	chr6:155597478	A	G	100	0.420	58	66.552	5.744	42	67.429	4.660	58	42	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--GL	chr6:155597478	A	NA	147	0	147	67.986	3.920	0	0	0	147	0	CLDN20	exonic	nonsynonymous_SNV
RCC_T5--1	chr6:160224193	C	A	31	0.065	29	51.931	10.780	2	33.000	0.000	29	2	PNLDC1	intronic	NA
RCC_T5--2	chr6:160224193	C	A	31	0.129	27	54.815	8.167	4	49.250	9.605	27	4	PNLDC1	intronic	NA
RCC_T5--3	chr6:160224193	C	A	25	0.120	22	57.545	8.573	3	39.667	0.577	22	3	PNLDC1	intronic	NA
RCC_T5--4	chr6:160224193	C	A	29	0.172	24	53.375	10.012	5	44.800	8.438	24	5	PNLDC1	intronic	NA
RCC_T5--5	chr6:160224193	C	A	25	0.120	22	54.136	8.747	3	40.000	0.000	22	3	PNLDC1	intronic	NA
RCC_T5--6	chr6:160224193	C	A	20	0.100	18	58.167	9.507	2	40.000	1.414	18	2	PNLDC1	intronic	NA
RCC_T5--7	chr6:160224193	C	A	22	0.045	21	53.524	9.141	1	50.000	0.000	21	1	PNLDC1	intronic	NA
RCC_T5--GL	chr6:160224193	C	NA	33	0	33	53.970	9.475	0	0	0	33	0	PNLDC1	intronic	NA
RCC_T5--1	chr6:160480222	T	C	27	0.111	24	54.875	10.723	3	33.000	0.000	24	3	IGF2R	intronic	NA
RCC_T5--2	chr6:160480222	T	C	30	0.133	26	53.500	11.480	4	35.500	5.000	26	4	IGF2R	intronic	NA
RCC_T5--3	chr6:160480222	T	C	31	0.097	28	51.179	9.926	3	34.000	1.732	28	3	IGF2R	intronic	NA
RCC_T5--4	chr6:160480222	T	C	37	0.027	36	54.639	10.179	1	33.000	0.000	36	1	IGF2R	intronic	NA
RCC_T5--5	chr6:160480222	T	NA	20	0	19	56.211	9.108	0	0	0	19	0	IGF2R	intronic	NA
RCC_T5--6	chr6:160480222	T	C	21	0.238	16	55.000	10.621	5	36.200	4.087	16	5	IGF2R	intronic	NA
RCC_T5--7	chr6:160480222	T	NA	17	0	17	53.059	10.651	0	0	0	17	0	IGF2R	intronic	NA
RCC_T5--GL	chr6:160480222	T	NA	36	0	35	50.229	12.614	0	0	0	35	0	IGF2R	intronic	NA
RCC_T5--1	chr6:165832327	C	NA	44	0	44	68.455	4.278	0	0	0	44	0	PDE10A	intronic	NA
RCC_T5--2	chr6:165832327	C	NA	48	0	48	67.812	5.988	0	0	0	48	0	PDE10A	intronic	NA
RCC_T5--3	chr6:165832327	C	NA	53	0	53	69.528	3.226	0	0	0	53	0	PDE10A	intronic	NA
RCC_T5--4	chr6:165832327	C	NA	50	0	50	69.260	3.439	0	0	0	50	0	PDE10A	intronic	NA
RCC_T5--5	chr6:165832327	C	NA	54	0	54	66.093	6.830	0	0	0	54	0	PDE10A	intronic	NA
RCC_T5--6	chr6:165832327	C	T	39	0.128	34	66.941	6.448	5	69.600	2.793	34	5	PDE10A	intronic	NA
RCC_T5--7	chr6:165832327	C	NA	46	0	46	68.870	5.365	0	0	0	46	0	PDE10A	intronic	NA
RCC_T5--GL	chr6:165832327	C	NA	58	0	57	69.211	4.949	0	0	0	57	0	PDE10A	intronic	NA
RCC_T5--1	chr6:168475945	A	C	71	0.225	55	66.455	3.096	16	65.438	3.812	55	16	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--2	chr6:168475945	A	C	75	0.027	73	66.986	3.580	2	60.500	4.950	73	2	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--3	chr6:168475945	A	NA	67	0	67	65.254	8.252	0	0	0	67	0	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--4	chr6:168475945	A	NA	95	0	95	67.253	5.696	0	0	0	95	0	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--5	chr6:168475945	A	C	56	0.179	46	66.283	6.517	10	69.400	3.307	46	10	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--6	chr6:168475945	A	NA	90	0	90	65.733	5.369	0	0	0	90	0	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--7	chr6:168475945	A	C	73	0.055	69	66.420	5.109	4	63.750	6.131	69	4	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr6:168475945	A	NA	77	0	77	67.468	3.775	0	0	0	77	0	FRMD1	exonic	nonsynonymous_SNV
RCC_T5--1	chr6:24568953	T	NA	28	0	28	61.179	7.737	0	0	0	28	0	KIAA0319	intronic	NA
RCC_T5--2	chr6:24568953	T	G	35	0.029	34	59.500	8.928	1	33.000	0.000	34	1	KIAA0319	intronic	NA
RCC_T5--3	chr6:24568953	T	G	29	0.172	24	58.625	10.257	5	39.000	2.828	24	5	KIAA0319	intronic	NA
RCC_T5--4	chr6:24568953	T	NA	20	0	20	59.100	9.014	0	0	0	20	0	KIAA0319	intronic	NA
RCC_T5--5	chr6:24568953	T	NA	28	0	28	59.321	8.641	0	0	0	28	0	KIAA0319	intronic	NA
RCC_T5--6	chr6:24568953	T	NA	35	0	35	56.857	11.525	0	0	0	35	0	KIAA0319	intronic	NA
RCC_T5--7	chr6:24568953	T	NA	37	0	37	61.568	7.209	0	0	0	37	0	KIAA0319	intronic	NA
RCC_T5--GL	chr6:24568953	T	NA	47	0	45	58.578	11.087	0	0	0	45	0	KIAA0319	intronic	NA
RCC_T5--1	chr6:35715254	C	A	67	0.164	56	67.143	3.113	11	66.091	3.807	56	11	ARMC12	intronic	NA
RCC_T5--2	chr6:35715254	C	A	62	0.161	52	65.962	6.736	10	68.600	2.221	52	10	ARMC12	intronic	NA
RCC_T5--3	chr6:35715254	C	A	80	0.175	66	67.364	5.579	14	66.857	4.365	66	14	ARMC12	intronic	NA
RCC_T5--4	chr6:35715254	C	A	79	0.203	63	65.667	9.410	16	69.562	2.707	63	16	ARMC12	intronic	NA
RCC_T5--5	chr6:35715254	C	A	76	0.250	57	66.053	8.001	19	68.421	3.820	57	19	ARMC12	intronic	NA
RCC_T5--6	chr6:35715254	C	A	81	0.185	66	67.121	7.055	15	67.000	4.071	66	15	ARMC12	intronic	NA
RCC_T5--7	chr6:35715254	C	A	56	0.339	37	68.378	4.009	19	66.789	8.651	37	19	ARMC12	intronic	NA
RCC_T5--GL	chr6:35715254	C	NA	121	0	120	68.175	5.409	0	0	0	120	0	ARMC12	intronic	NA
RCC_T5--1	chr6:39046025	A	NA	26	0	25	57.560	12.679	0	0	0	25	0	GLP1R	intronic	NA
RCC_T5--2	chr6:39046025	A	G	20	0.100	18	54.222	13.558	2	33.000	0.000	18	2	GLP1R	intronic	NA
RCC_T5--3	chr6:39046025	A	G	18	0.167	15	50.067	14.572	3	33.000	0.000	15	3	GLP1R	intronic	NA
RCC_T5--4	chr6:39046025	A	NA	23	0	23	57.696	13.643	0	0	0	23	0	GLP1R	intronic	NA
RCC_T5--5	chr6:39046025	A	NA	17	0	17	60.824	7.170	0	0	0	17	0	GLP1R	intronic	NA
RCC_T5--6	chr6:39046025	A	G	20	0.250	15	55.467	13.611	5	37.400	4.980	15	5	GLP1R	intronic	NA
RCC_T5--7	chr6:39046025	A	NA	23	0	22	57.455	12.656	0	0	0	22	0	GLP1R	intronic	NA
RCC_T5--GL	chr6:39046025	A	NA	36	0	36	56.611	13.282	0	0	0	36	0	GLP1R	intronic	NA
RCC_T5--1	chr6:39847070	T	NA	27	0	27	56.593	11.676	0	0	0	27	0	DAAM2	exonic	synonymous_SNV
RCC_T5--2	chr6:39847070	T	NA	17	0	17	48.824	13.621	0	0	0	17	0	DAAM2	exonic	synonymous_SNV
RCC_T5--3	chr6:39847070	T	C	21	0.095	19	59.368	10.782	2	35.000	2.828	19	2	DAAM2	exonic	synonymous_SNV
RCC_T5--4	chr6:39847070	T	C	24	0.167	20	60.300	10.147	4	36.750	5.679	20	4	DAAM2	exonic	synonymous_SNV
RCC_T5--5	chr6:39847070	T	NA	22	0	22	57.091	10.997	0	0	0	22	0	DAAM2	exonic	synonymous_SNV
RCC_T5--6	chr6:39847070	T	C	24	0.042	23	55.087	13.215	1	33.000	0.000	23	1	DAAM2	exonic	synonymous_SNV
RCC_T5--7	chr6:39847070	T	C	22	0.045	21	54.238	8.910	1	33.000	0.000	21	1	DAAM2	exonic	synonymous_SNV
RCC_T5--GL	chr6:39847070	T	NA	42	0	42	56.952	9.558	0	0	0	42	0	DAAM2	exonic	synonymous_SNV
RCC_T5--1	chr6:70876020	C	T	22	0.273	16	68.125	2.895	6	63.833	15.198	16	6	COL19A1	intronic	NA
RCC_T5--2	chr6:70876020	C	T	21	0.048	20	66.800	6.856	1	64.000	0.000	20	1	COL19A1	intronic	NA
RCC_T5--3	chr6:70876020	C	T	24	0.167	20	69.150	3.265	4	68.750	2.500	20	4	COL19A1	intronic	NA
RCC_T5--4	chr6:70876020	C	T	22	0.091	20	67.600	3.803	2	71.000	0.000	20	2	COL19A1	intronic	NA
RCC_T5--5	chr6:70876020	C	T	41	0.268	30	67.867	6.469	11	65.091	11.184	30	11	COL19A1	intronic	NA
RCC_T5--6	chr6:70876020	C	T	31	0.129	27	68.444	3.984	4	69.250	0.500	27	4	COL19A1	intronic	NA
RCC_T5--7	chr6:70876020	C	T	26	0.231	20	66.950	4.058	6	68.000	1.897	20	6	COL19A1	intronic	NA
RCC_T5--GL	chr6:70876020	C	NA	34	0	34	67.735	4.621	0	0	0	34	0	COL19A1	intronic	NA
RCC_T5--1	chr6:70990781	C	NA	40	0	39	65.513	6.766	0	0	0	39	0	COL9A1	intronic	NA
RCC_T5--2	chr6:70990781	C	NA	41	0	41	65.366	7.310	0	0	0	41	0	COL9A1	intronic	NA
RCC_T5--3	chr6:70990781	C	NA	43	0	43	65.256	5.192	0	0	0	43	0	COL9A1	intronic	NA
RCC_T5--4	chr6:70990781	C	A	53	0.113	47	66.234	7.266	6	66.000	3.950	47	6	COL9A1	intronic	NA
RCC_T5--5	chr6:70990781	C	NA	53	0	53	64.547	7.510	0	0	0	53	0	COL9A1	intronic	NA
RCC_T5--6	chr6:70990781	C	NA	35	0	35	66.057	6.966	0	0	0	35	0	COL9A1	intronic	NA
RCC_T5--7	chr6:70990781	C	NA	58	0	58	65.569	8.329	0	0	0	58	0	COL9A1	intronic	NA
RCC_T5--GL	chr6:70990781	C	NA	43	0	43	67.884	4.484	0	0	0	43	0	COL9A1	intronic	NA
RCC_T5--1	chr6:7331438	T	G	75	0.187	60	67.417	5.484	14	67.857	4.167	60	14	CAGE1	intronic	NA
RCC_T5--2	chr6:7331438	T	G	99	0.121	87	68.552	3.732	12	69.167	2.368	87	12	CAGE1	intronic	NA
RCC_T5--3	chr6:7331438	T	G	79	0.152	67	67.537	7.170	12	63.167	14.383	67	12	CAGE1	intronic	NA
RCC_T5--4	chr6:7331438	T	G	81	0.136	70	68.043	3.528	11	64.909	10.949	70	11	CAGE1	intronic	NA
RCC_T5--5	chr6:7331438	T	G	60	0.200	48	68.646	4.123	12	66.750	3.841	48	12	CAGE1	intronic	NA
RCC_T5--6	chr6:7331438	T	G	88	0.159	74	68.162	3.626	14	69.357	3.225	74	14	CAGE1	intronic	NA
RCC_T5--7	chr6:7331438	T	G	68	0.309	47	68.085	3.488	21	68.048	4.272	47	21	CAGE1	intronic	NA
RCC_T5--GL	chr6:7331438	T	NA	123	0	123	68.699	4.979	0	0	0	123	0	CAGE1	intronic	NA
RCC_T5--1	chr6:76604781	A	NA	28	0	27	68.407	3.467	0	0	0	27	0	MYO6	intronic	NA
RCC_T5--2	chr6:76604781	A	NA	30	0	30	68.233	4.576	0	0	0	30	0	MYO6	intronic	NA
RCC_T5--3	chr6:76604781	A	T	26	0.231	20	68.750	3.654	6	70.333	1.966	20	6	MYO6	intronic	NA
RCC_T5--4	chr6:76604781	A	T	52	0.115	46	69.130	3.059	6	71.667	0.816	46	6	MYO6	intronic	NA
RCC_T5--5	chr6:76604781	A	NA	27	0	27	68.704	3.657	0	0	0	27	0	MYO6	intronic	NA
RCC_T5--6	chr6:76604781	A	NA	39	0	39	68.487	3.478	0	0	0	39	0	MYO6	intronic	NA
RCC_T5--7	chr6:76604781	A	NA	23	0	23	67.826	6.939	0	0	0	23	0	MYO6	intronic	NA
RCC_T5--GL	chr6:76604781	A	NA	48	0	48	67.896	4.999	0	0	0	48	0	MYO6	intronic	NA
RCC_T5--1	chr6:85997647	T	G	27	0.037	26	58.423	11.479	1	38.000	0.000	26	1	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--2	chr6:85997647	T	G	23	0.217	18	61.222	10.757	5	35.400	3.912	18	5	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--3	chr6:85997647	T	NA	39	0	39	56.231	10.982	0	0	0	39	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--4	chr6:85997647	T	NA	43	0	43	59.674	8.538	0	0	0	43	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--5	chr6:85997647	T	NA	31	0	31	61.161	7.742	0	0	0	31	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--6	chr6:85997647	T	NA	39	0	39	57.179	10.672	0	0	0	39	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--7	chr6:85997647	T	NA	31	0	31	59.516	9.412	0	0	0	31	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--GL	chr6:85997647	T	NA	38	0	38	62.026	9.350	0	0	0	38	0	TBX18(dist=523693),NT5E(dist=161655)	intergenic	NA
RCC_T5--1	chr6:97679541	A	G	56	0.071	31	65.871	6.667	4	55.750	15.349	31	4	MIR548H3	ncRNA_intronic	NA
RCC_T5--2	chr6:97679541	A	G	70	0.086	34	67.559	4.730	6	66.000	0.894	34	6	MIR548H3	ncRNA_intronic	NA
RCC_T5--3	chr6:97679541	A	G	65	0.031	43	67.442	4.426	2	65.500	0.707	43	2	MIR548H3	ncRNA_intronic	NA
RCC_T5--4	chr6:97679541	A	G	77	0.039	45	66.222	6.925	3	61.000	8.660	45	3	MIR548H3	ncRNA_intronic	NA
RCC_T5--5	chr6:97679541	A	G	58	0.034	28	67.500	4.558	2	64.000	4.243	28	2	MIR548H3	ncRNA_intronic	NA
RCC_T5--6	chr6:97679541	A	G	95	0.042	57	66.281	6.816	4	57.750	16.520	57	4	MIR548H3	ncRNA_intronic	NA
RCC_T5--7	chr6:97679541	A	G	64	0.016	35	68.457	3.119	1	67.000	0.000	35	1	MIR548H3	ncRNA_intronic	NA
RCC_T5--GL	chr6:97679541	A	NA	115	0	72	68.278	4.355	0	0	0	72	0	MIR548H3	ncRNA_intronic	NA
RCC_T5--1	chr7:100284231	T	C	24	0.125	20	57.150	13.716	3	36.333	5.774	20	3	GIGYF1	intronic	NA
RCC_T5--2	chr7:100284231	T	C	30	0.033	29	59.793	13.004	1	33.000	0.000	29	1	GIGYF1	intronic	NA
RCC_T5--3	chr7:100284231	T	C	25	0.120	22	62.227	9.695	3	33.000	0.000	22	3	GIGYF1	intronic	NA
RCC_T5--4	chr7:100284231	T	C	47	0.191	38	58.789	12.312	9	34.111	1.691	38	9	GIGYF1	intronic	NA
RCC_T5--5	chr7:100284231	T	C	31	0.065	29	59.897	13.097	2	33.000	0.000	29	2	GIGYF1	intronic	NA
RCC_T5--6	chr7:100284231	T	C	23	0.174	19	59.158	12.812	4	37.000	8.000	19	4	GIGYF1	intronic	NA
RCC_T5--7	chr7:100284231	T	C	35	0.029	33	58.727	12.585	1	33.000	0.000	33	1	GIGYF1	intronic	NA
RCC_T5--GL	chr7:100284231	T	NA	34	0	34	61.941	11.037	0	0	0	34	0	GIGYF1	intronic	NA
RCC_T5--1	chr7:100362967	T	NA	24	0	24	57.333	13.656	0	0	0	24	0	ZAN	intronic	NA
RCC_T5--2	chr7:100362967	T	NA	35	0	35	57.629	11.743	0	0	0	35	0	ZAN	intronic	NA
RCC_T5--3	chr7:100362967	T	C	26	0.077	24	61.500	9.974	2	33.000	0.000	24	2	ZAN	intronic	NA
RCC_T5--4	chr7:100362967	T	NA	41	0	41	59.463	11.567	0	0	0	41	0	ZAN	intronic	NA
RCC_T5--5	chr7:100362967	T	C	28	0.071	26	62.846	8.403	2	33.000	0.000	26	2	ZAN	intronic	NA
RCC_T5--6	chr7:100362967	T	C	27	0.148	23	59.609	12.150	4	45.500	8.737	23	4	ZAN	intronic	NA
RCC_T5--7	chr7:100362967	T	C	24	0.042	23	58.783	11.870	1	33.000	0.000	23	1	ZAN	intronic	NA
RCC_T5--GL	chr7:100362967	T	NA	44	0	43	60.581	11.458	0	0	0	43	0	ZAN	intronic	NA
RCC_T5--1	chr7:100391840	G	NA	56	0	56	61.304	10.061	0	0	0	56	0	ZAN	exonic	unknown
RCC_T5--2	chr7:100391840	G	NA	41	0	41	63.317	8.937	0	0	0	41	0	ZAN	exonic	unknown
RCC_T5--3	chr7:100391840	G	NA	26	0	26	62.923	8.485	0	0	0	26	0	ZAN	exonic	unknown
RCC_T5--4	chr7:100391840	G	T	33	0.121	29	64.207	8.015	4	58.000	16.753	29	4	ZAN	exonic	unknown
RCC_T5--5	chr7:100391840	G	NA	37	0	37	62.432	8.288	0	0	0	37	0	ZAN	exonic	unknown
RCC_T5--6	chr7:100391840	G	NA	23	0	23	59.783	9.190	0	0	0	23	0	ZAN	exonic	unknown
RCC_T5--7	chr7:100391840	G	NA	24	0	23	65.043	6.285	0	0	0	23	0	ZAN	exonic	unknown
RCC_T5--GL	chr7:100391840	G	NA	46	0	46	63.609	8.439	0	0	0	46	0	ZAN	exonic	unknown
RCC_T5--1	chr7:100655801	C	T	41	0.220	32	67.844	4.213	9	60.889	11.429	32	9	MUC12	intronic	NA
RCC_T5--2	chr7:100655801	C	T	53	0.113	47	66.596	6.662	6	66.167	2.927	47	6	MUC12	intronic	NA
RCC_T5--3	chr7:100655801	C	T	60	0.133	52	66.096	7.703	8	66.750	7.592	52	8	MUC12	intronic	NA
RCC_T5--4	chr7:100655801	C	T	43	0.070	40	66.775	8.613	3	67.667	5.859	40	3	MUC12	intronic	NA
RCC_T5--5	chr7:100655801	C	T	44	0.318	30	66.433	7.195	14	68.429	2.901	30	14	MUC12	intronic	NA
RCC_T5--6	chr7:100655801	C	T	46	0.109	41	66.610	8.170	5	67.600	4.393	41	5	MUC12	intronic	NA
RCC_T5--7	chr7:100655801	C	T	32	0.312	22	66.091	11.041	10	68.000	4.922	22	10	MUC12	intronic	NA
RCC_T5--GL	chr7:100655801	C	NA	75	0	75	67.773	4.125	0	0	0	75	0	MUC12	intronic	NA
RCC_T5--1	chr7:100859317	A	G	27	0.074	24	59.875	10.597	2	33.000	0.000	24	2	PLOD3	intronic	NA
RCC_T5--2	chr7:100859317	A	G	20	0.050	19	58.632	13.305	1	33.000	0.000	19	1	PLOD3	intronic	NA
RCC_T5--3	chr7:100859317	A	G	18	0.167	15	59.000	14.876	3	33.000	0.000	15	3	PLOD3	intronic	NA
RCC_T5--4	chr7:100859317	A	NA	15	0	15	54.467	12.889	0	0	0	15	0	PLOD3	intronic	NA
RCC_T5--5	chr7:100859317	A	NA	25	0	25	57.400	12.682	0	0	0	25	0	PLOD3	intronic	NA
RCC_T5--6	chr7:100859317	A	G	20	0.250	15	58.733	13.408	5	33.600	1.342	15	5	PLOD3	intronic	NA
RCC_T5--7	chr7:100859317	A	G	31	0.032	30	61.067	10.786	1	33.000	0.000	30	1	PLOD3	intronic	NA
RCC_T5--GL	chr7:100859317	A	NA	39	0	39	58.769	12.706	0	0	0	39	0	PLOD3	intronic	NA
RCC_T5--1	chr7:106508569	T	G	29	0.069	27	53.074	12.385	2	36.500	0.707	27	2	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:106508569	T	G	40	0.075	37	57.649	9.461	3	34.000	1.732	37	3	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:106508569	T	G	34	0.176	27	48.704	11.906	6	36.833	4.792	27	6	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:106508569	T	G	37	0.054	35	57.200	10.266	2	34.500	2.121	35	2	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:106508569	T	G	40	0.100	36	54.750	11.624	4	36.250	0.500	36	4	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:106508569	T	G	33	0.242	25	58.880	10.481	8	37.125	5.915	25	8	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:106508569	T	G	38	0.079	33	56.697	9.822	3	35.000	1.732	33	3	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:106508569	T	NA	37	0	37	52.324	12.446	0	0	0	37	0	PIK3CG	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:114210983	C	A	118	0.229	91	66.473	7.364	27	67.556	6.687	91	27	FOXP2	intronic	NA
RCC_T5--2	chr7:114210983	C	A	103	0.214	81	68.123	5.285	22	68.773	3.571	81	22	FOXP2	intronic	NA
RCC_T5--3	chr7:114210983	C	A	128	0.219	100	67.740	6.144	28	65.750	10.251	100	28	FOXP2	intronic	NA
RCC_T5--4	chr7:114210983	C	A	133	0.128	116	67.819	5.757	17	68.000	3.691	116	17	FOXP2	intronic	NA
RCC_T5--5	chr7:114210983	C	A	126	0.206	100	66.670	7.708	26	67.038	5.118	100	26	FOXP2	intronic	NA
RCC_T5--6	chr7:114210983	C	A	120	0.158	101	67.901	6.098	19	66.368	11.016	101	19	FOXP2	intronic	NA
RCC_T5--7	chr7:114210983	C	A	116	0.379	72	68.528	3.914	44	67.023	5.618	72	44	FOXP2	intronic	NA
RCC_T5--GL	chr7:114210983	C	NA	139	0	139	67.302	7.550	0	0	0	139	0	FOXP2	intronic	NA
RCC_T5--1	chr7:127017318	G	NA	261	0	261	65.728	6.999	0	0	0	261	0	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:127017318	G	A	312	0.003	311	67.830	5.659	1	65.000	0.000	311	1	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:127017318	G	A	268	0.007	266	67.286	6.679	2	37.500	6.364	266	2	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:127017318	G	NA	313	0	312	68.010	5.929	0	0	0	312	0	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:127017318	G	NA	338	0	337	67.148	6.696	0	0	0	337	0	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:127017318	G	NA	332	0	332	68.063	5.498	0	0	0	332	0	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:127017318	G	A	309	0.165	257	68.214	5.225	51	68.216	4.619	257	51	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:127017318	G	NA	281	0	281	68.438	4.390	0	0	0	281	0	ZNF800	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:128040160	C	T	135	0.244	101	65.050	8.340	33	67.939	4.175	101	33	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:128040160	C	T	158	0.165	131	67.160	5.285	26	67.731	5.668	131	26	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:128040160	C	T	115	0.217	90	65.311	7.864	25	66.000	5.339	90	25	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:128040160	C	T	172	0.134	149	67.362	4.782	23	68.304	3.323	149	23	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:128040160	C	T	137	0.255	102	66.284	7.077	35	65.829	7.056	102	35	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:128040160	C	T	142	0.162	119	66.218	6.114	23	67.348	4.074	119	23	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:128040160	C	T	143	0.315	98	66.571	7.749	45	67.800	3.672	98	45	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:128040160	C	NA	166	0	166	65.452	7.188	0	0	0	166	0	IMPDH1	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:128446389	G	C	111	0.261	82	66.598	6.594	29	63.034	11.776	82	29	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:128446389	G	C	128	0.133	111	67.559	5.303	17	68.000	3.317	111	17	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:128446389	G	C	123	0.171	102	68.157	4.179	21	68.190	3.311	102	21	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:128446389	G	C	128	0.180	105	68.133	4.440	23	67.696	3.994	105	23	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:128446389	G	C	113	0.239	86	66.605	5.607	27	68.407	3.661	86	27	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:128446389	G	C	124	0.105	111	66.793	6.077	13	67.000	4.103	111	13	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:128446389	G	C	115	0.243	87	67.828	5.331	28	69.786	2.658	87	28	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:128446389	G	NA	173	0	173	68.150	5.100	0	0	0	173	0	CCDC136	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:128480187	G	C	68	0.206	54	64.185	9.856	14	64.357	5.078	54	14	FLNC	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:128480187	G	C	69	0.188	56	66.071	5.784	13	67.692	4.516	56	13	FLNC	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:128480187	G	C	68	0.250	51	65.098	6.113	17	63.647	10.571	51	17	FLNC	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:128480187	G	C	96	0.083	88	64.591	8.051	8	58.375	10.862	88	8	FLNC	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:128480187	G	C	72	0.236	55	65.909	6.418	17	64.059	4.750	55	17	FLNC	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:128480187	G	C	80	0.113	71	65.704	5.834	9	61.889	11.527	71	9	FLNC	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:128480187	G	C	82	0.427	47	65.830	6.141	35	66.400	4.906	47	35	FLNC	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:128480187	G	NA	78	0	78	63.833	7.594	0	0	0	78	0	FLNC	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:140397958	T	G	59	0.068	55	53.800	11.459	4	39.500	3.786	55	4	NDUFB2	intronic	NA
RCC_T5--2	chr7:140397958	T	G	44	0.045	41	55.024	10.253	2	37.500	2.121	41	2	NDUFB2	intronic	NA
RCC_T5--3	chr7:140397958	T	G	50	0.180	40	57.925	8.810	9	38.333	7.566	40	9	NDUFB2	intronic	NA
RCC_T5--4	chr7:140397958	T	G	50	0.020	49	59.449	8.704	1	37.000	0.000	49	1	NDUFB2	intronic	NA
RCC_T5--5	chr7:140397958	T	G	51	0.039	48	56.896	10.519	2	35.000	2.828	48	2	NDUFB2	intronic	NA
RCC_T5--6	chr7:140397958	T	G	47	0.064	44	56.045	11.287	3	35.333	2.082	44	3	NDUFB2	intronic	NA
RCC_T5--7	chr7:140397958	T	NA	31	0	30	55.533	8.756	0	0	0	30	0	NDUFB2	intronic	NA
RCC_T5--GL	chr7:140397958	T	NA	61	0	61	57.918	9.992	0	0	0	61	0	NDUFB2	intronic	NA
RCC_T5--1	chr7:150267105	T	G	23	0.087	21	63.429	8.611	2	43.500	10.607	21	2	GIMAP4	intronic	NA
RCC_T5--2	chr7:150267105	T	G	19	0.053	18	60.333	8.210	1	37.000	0.000	18	1	GIMAP4	intronic	NA
RCC_T5--3	chr7:150267105	T	NA	19	0	18	60.500	14.047	0	0	0	18	0	GIMAP4	intronic	NA
RCC_T5--4	chr7:150267105	T	NA	23	0	23	63.087	12.362	0	0	0	23	0	GIMAP4	intronic	NA
RCC_T5--5	chr7:150267105	T	G	22	0.045	21	57.810	12.356	1	50.000	0.000	21	1	GIMAP4	intronic	NA
RCC_T5--6	chr7:150267105	T	G	18	0.222	14	57.571	10.574	4	35.250	1.500	14	4	GIMAP4	intronic	NA
RCC_T5--7	chr7:150267105	T	NA	18	0	18	61.833	7.229	0	0	0	18	0	GIMAP4	intronic	NA
RCC_T5--GL	chr7:150267105	T	NA	36	0	36	60.500	9.967	0	0	0	36	0	GIMAP4	intronic	NA
RCC_T5--1	chr7:150384052	G	A	17	0.294	11	61.364	8.524	5	34.200	1.643	11	5	GIMAP2	intronic	NA
RCC_T5--2	chr7:150384052	G	A	24	0.083	20	62.950	9.506	2	64.000	0.000	20	2	GIMAP2	intronic	NA
RCC_T5--3	chr7:150384052	G	A	18	0.056	17	59.706	13.434	1	51.000	0.000	17	1	GIMAP2	intronic	NA
RCC_T5--4	chr7:150384052	G	A	14	0.143	11	63.727	9.350	2	33.000	0.000	11	2	GIMAP2	intronic	NA
RCC_T5--5	chr7:150384052	G	A	20	0.100	18	57.444	13.509	2	33.000	0.000	18	2	GIMAP2	intronic	NA
RCC_T5--6	chr7:150384052	G	A	19	0.105	17	62.059	9.175	2	45.500	17.678	17	2	GIMAP2	intronic	NA
RCC_T5--7	chr7:150384052	G	A	25	0.080	23	64.652	8.402	2	44.500	9.192	23	2	GIMAP2	intronic	NA
RCC_T5--GL	chr7:150384052	G	NA	33	0	33	64.091	9.625	0	0	0	33	0	GIMAP2	intronic	NA
RCC_T5--1	chr7:154860890	C	NA	109	0	109	65.642	6.995	0	0	0	109	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--2	chr7:154860890	C	NA	85	0	85	67.776	4.620	0	0	0	85	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--3	chr7:154860890	C	T	90	0.222	70	66.400	6.948	20	66.550	8.426	70	20	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--4	chr7:154860890	C	T	88	0.045	84	67.226	5.987	4	69.750	2.630	84	4	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--5	chr7:154860890	C	NA	91	0	91	67.956	5.442	0	0	0	91	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--6	chr7:154860890	C	NA	77	0	77	66.558	6.244	0	0	0	77	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--7	chr7:154860890	C	NA	103	0	103	67.417	5.315	0	0	0	103	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--GL	chr7:154860890	C	NA	105	0	105	67.829	4.730	0	0	0	105	0	HTR5A-AS1	ncRNA_exonic	NA
RCC_T5--1	chr7:16834782	T	C	21	0.190	17	62.118	9.526	4	36.750	2.500	17	4	AGR2	intronic	NA
RCC_T5--2	chr7:16834782	T	NA	33	0	33	60.152	9.856	0	0	0	33	0	AGR2	intronic	NA
RCC_T5--3	chr7:16834782	T	NA	40	0	40	58.175	10.732	0	0	0	40	0	AGR2	intronic	NA
RCC_T5--4	chr7:16834782	T	NA	48	0	47	61.681	8.283	0	0	0	47	0	AGR2	intronic	NA
RCC_T5--5	chr7:16834782	T	C	37	0.027	34	62.294	10.095	1	38.000	0.000	34	1	AGR2	intronic	NA
RCC_T5--6	chr7:16834782	T	C	33	0.061	31	59.000	12.003	2	33.000	0.000	31	2	AGR2	intronic	NA
RCC_T5--7	chr7:16834782	T	NA	30	0	30	63.300	6.944	0	0	0	30	0	AGR2	intronic	NA
RCC_T5--GL	chr7:16834782	T	NA	50	0	50	60.640	9.743	0	0	0	50	0	AGR2	intronic	NA
RCC_T5--1	chr7:22922034	T	A	18	0.111	16	63.188	10.765	2	35.500	3.536	16	2	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--2	chr7:22922034	T	A	26	0.077	24	60.375	13.862	2	35.500	3.536	24	2	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--3	chr7:22922034	T	A	25	0.200	20	65.100	7.341	5	37.600	2.881	20	5	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--4	chr7:22922034	T	A	23	0.087	20	62.100	9.380	2	35.500	3.536	20	2	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--5	chr7:22922034	T	NA	19	0	19	61.316	12.858	0	0	0	19	0	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--6	chr7:22922034	T	A	17	0.059	16	57.688	12.627	1	33.000	0.000	16	1	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--7	chr7:22922034	T	A	32	0.094	29	55.448	12.469	3	38.000	0.000	29	3	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--GL	chr7:22922034	T	NA	42	0	42	63.238	10.462	0	0	0	42	0	SNORD93(dist=25729),FAM126A(dist=58844)	intergenic	NA
RCC_T5--1	chr7:23823042	T	NA	27	0	27	59.407	9.237	0	0	0	27	0	STK31	intronic	NA
RCC_T5--2	chr7:23823042	T	NA	23	0	23	64.217	6.529	0	0	0	23	0	STK31	intronic	NA
RCC_T5--3	chr7:23823042	T	G	23	0.174	18	59.667	11.438	4	37.250	2.872	18	4	STK31	intronic	NA
RCC_T5--4	chr7:23823042	T	NA	34	0	34	63.706	6.142	0	0	0	34	0	STK31	intronic	NA
RCC_T5--5	chr7:23823042	T	NA	18	0	18	64.389	4.354	0	0	0	18	0	STK31	intronic	NA
RCC_T5--6	chr7:23823042	T	G	31	0.065	29	63.345	5.563	2	39.000	0.000	29	2	STK31	intronic	NA
RCC_T5--7	chr7:23823042	T	NA	21	0	21	64.381	5.220	0	0	0	21	0	STK31	intronic	NA
RCC_T5--GL	chr7:23823042	T	NA	40	0	39	64.231	6.111	0	0	0	39	0	STK31	intronic	NA
RCC_T5--1	chr7:28997142	A	C	26	0.038	25	52.680	11.220	1	33.000	0.000	25	1	TRIL	exonic	unknown
RCC_T5--2	chr7:28997142	A	C	15	0.267	11	63.636	7.762	4	33.000	0.000	11	4	TRIL	exonic	unknown
RCC_T5--3	chr7:28997142	A	C	15	0.067	14	58.643	9.605	1	36.000	0.000	14	1	TRIL	exonic	unknown
RCC_T5--4	chr7:28997142	A	NA	30	0	30	58.233	12.881	0	0	0	30	0	TRIL	exonic	unknown
RCC_T5--5	chr7:28997142	A	C	30	0.033	29	54.828	13.665	1	36.000	0.000	29	1	TRIL	exonic	unknown
RCC_T5--6	chr7:28997142	A	NA	13	0	13	54.846	13.704	0	0	0	13	0	TRIL	exonic	unknown
RCC_T5--7	chr7:28997142	A	NA	16	0	16	55.250	12.954	0	0	0	16	0	TRIL	exonic	unknown
RCC_T5--GL	chr7:28997142	A	NA	45	0	45	60.956	9.610	0	0	0	45	0	TRIL	exonic	unknown
RCC_T5--1	chr7:47869652	T	G	18	0.056	17	63.588	6.423	1	37.000	0.000	17	1	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:47869652	T	G	35	0.171	28	54.179	13.747	6	40.167	8.954	28	6	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:47869652	T	G	34	0.088	31	56.387	13.827	3	37.000	0.000	31	3	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:47869652	T	G	33	0.061	31	62.194	9.752	2	37.000	0.000	31	2	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:47869652	T	G	34	0.029	32	61.406	10.898	1	37.000	0.000	32	1	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:47869652	T	G	36	0.028	35	56.857	11.019	1	39.000	0.000	35	1	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:47869652	T	G	41	0.049	39	58.692	10.322	2	41.000	5.657	39	2	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:47869652	T	NA	46	0	44	57.682	10.436	0	0	0	44	0	PKD1L1	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:4815370	T	NA	20	0	20	62.550	7.917	0	0	0	20	0	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:4815370	T	G	18	0.056	17	61.412	9.233	1	38.000	0.000	17	1	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:4815370	T	G	28	0.214	22	62.455	11.092	6	37.167	5.845	22	6	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:4815370	T	G	20	0.050	19	59.263	12.771	1	36.000	0.000	19	1	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:4815370	T	G	19	0.053	18	64.500	7.695	1	33.000	0.000	18	1	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:4815370	T	G	14	0.071	13	61.000	12.097	1	33.000	0.000	13	1	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:4815370	T	G	30	0.033	29	61.931	9.993	1	33.000	0.000	29	1	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:4815370	T	NA	37	0	37	56.703	12.534	0	0	0	37	0	AP5Z1	exonic	nonsynonymous_SNV
RCC_T5--1	chr7:63727421	C	G	18	0.333	12	67.167	3.810	6	68.833	3.710	12	6	ZNF679	downstream	NA
RCC_T5--2	chr7:63727421	C	G	22	0.182	18	67.944	5.926	4	68.750	2.217	18	4	ZNF679	downstream	NA
RCC_T5--3	chr7:63727421	C	G	15	0.067	14	68.357	2.590	1	61.000	0.000	14	1	ZNF679	downstream	NA
RCC_T5--4	chr7:63727421	C	G	31	0.194	25	67.320	6.908	6	67.833	5.601	25	6	ZNF679	downstream	NA
RCC_T5--5	chr7:63727421	C	G	19	0.211	15	69.000	2.803	4	67.750	2.217	15	4	ZNF679	downstream	NA
RCC_T5--6	chr7:63727421	C	G	29	0.069	27	66.444	6.536	2	68.000	4.243	27	2	ZNF679	downstream	NA
RCC_T5--7	chr7:63727421	C	G	18	0.278	13	67.769	6.858	5	70.800	1.304	13	5	ZNF679	downstream	NA
RCC_T5--GL	chr7:63727421	C	NA	35	0	35	68.600	5.812	0	0	0	35	0	ZNF679	downstream	NA
RCC_T5--1	chr7:64442288	A	NA	121	0	121	67.430	5.683	0	0	0	121	0	ZNF117	intronic	NA
RCC_T5--2	chr7:64442288	A	NA	120	0	120	68.800	2.941	0	0	0	120	0	ZNF117	intronic	NA
RCC_T5--3	chr7:64442288	A	NA	109	0	109	68.239	4.661	0	0	0	109	0	ZNF117	intronic	NA
RCC_T5--4	chr7:64442288	A	NA	130	0	130	68.769	4.212	0	0	0	130	0	ZNF117	intronic	NA
RCC_T5--5	chr7:64442288	A	NA	117	0	117	68.615	3.156	0	0	0	117	0	ZNF117	intronic	NA
RCC_T5--6	chr7:64442288	A	T	127	0.220	99	68.263	4.110	28	68.714	2.158	99	28	ZNF117	intronic	NA
RCC_T5--7	chr7:64442288	A	NA	114	0	114	69.000	2.687	0	0	0	114	0	ZNF117	intronic	NA
RCC_T5--GL	chr7:64442288	A	NA	174	0	174	68.029	5.009	0	0	0	174	0	ZNF117	intronic	NA
RCC_T5--1	chr7:72730742	A	C	21	0.095	19	56.421	10.900	2	35.000	2.828	19	2	TRIM50	intronic	NA
RCC_T5--2	chr7:72730742	A	C	25	0.080	23	56.261	11.415	2	36.000	4.243	23	2	TRIM50	intronic	NA
RCC_T5--3	chr7:72730742	A	C	20	0.200	16	58.938	11.132	4	38.500	5.000	16	4	TRIM50	intronic	NA
RCC_T5--4	chr7:72730742	A	NA	22	0	22	58.182	6.154	0	0	0	22	0	TRIM50	intronic	NA
RCC_T5--5	chr7:72730742	A	NA	17	0	17	56.471	9.035	0	0	0	17	0	TRIM50	intronic	NA
RCC_T5--6	chr7:72730742	A	C	25	0.120	22	59.591	12.030	3	36.333	3.055	22	3	TRIM50	intronic	NA
RCC_T5--7	chr7:72730742	A	C	31	0.032	30	58.967	10.053	1	33.000	0.000	30	1	TRIM50	intronic	NA
RCC_T5--GL	chr7:72730742	A	NA	38	0	37	57.378	12.102	0	0	0	37	0	TRIM50	intronic	NA
RCC_T5--1	chr7:83101205	T	C	130	0.292	92	66.685	7.716	38	68.105	5.476	92	38	SEMA3E	intronic	NA
RCC_T5--2	chr7:83101205	T	C	96	0.094	87	68.092	5.995	9	69.000	3.428	87	9	SEMA3E	intronic	NA
RCC_T5--3	chr7:83101205	T	C	113	0.133	98	67.765	5.091	15	68.000	4.424	98	15	SEMA3E	intronic	NA
RCC_T5--4	chr7:83101205	T	C	132	0.129	114	68.772	4.551	17	69.294	2.710	114	17	SEMA3E	intronic	NA
RCC_T5--5	chr7:83101205	T	C	130	0.269	95	68.074	3.754	35	68.429	3.720	95	35	SEMA3E	intronic	NA
RCC_T5--6	chr7:83101205	T	C	116	0.241	88	68.489	3.889	28	66.500	9.916	88	28	SEMA3E	intronic	NA
RCC_T5--7	chr7:83101205	T	C	112	0.384	69	67.638	6.642	43	69.419	3.500	69	43	SEMA3E	intronic	NA
RCC_T5--GL	chr7:83101205	T	NA	108	0	108	68.074	6.040	0	0	0	108	0	SEMA3E	intronic	NA
RCC_T5--1	chr7:91621736	G	NA	16	0	16	68.188	2.316	0	0	0	16	0	AKAP9	intronic	NA
RCC_T5--2	chr7:91621736	G	T	12	0.167	9	68.111	3.257	2	71.500	0.707	9	2	AKAP9	intronic	NA
RCC_T5--3	chr7:91621736	G	NA	13	0	13	65.385	10.251	0	0	0	13	0	AKAP9	intronic	NA
RCC_T5--4	chr7:91621736	G	NA	19	0	19	68.789	3.765	0	0	0	19	0	AKAP9	intronic	NA
RCC_T5--5	chr7:91621736	G	NA	13	0	13	66.615	4.992	0	0	0	13	0	AKAP9	intronic	NA
RCC_T5--6	chr7:91621736	G	NA	14	0	14	69.071	3.518	0	0	0	14	0	AKAP9	intronic	NA
RCC_T5--7	chr7:91621736	G	NA	10	0	9	69.778	2.539	0	0	0	9	0	AKAP9	intronic	NA
RCC_T5--GL	chr7:91621736	G	NA	34	0	34	68.088	5.071	0	0	0	34	0	AKAP9	intronic	NA
RCC_T5--1	chr7:97577266	G	A	107	0.187	87	65.184	8.209	20	66.250	8.879	87	20	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--2	chr7:97577266	G	A	114	0.219	89	68.348	3.665	25	68.520	3.595	89	25	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--3	chr7:97577266	G	A	130	0.162	109	67.385	6.498	21	68.000	5.099	109	21	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--4	chr7:97577266	G	A	114	0.149	97	68.536	3.852	17	68.412	3.429	97	17	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--5	chr7:97577266	G	A	108	0.213	85	65.612	6.761	23	67.783	4.522	85	23	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--6	chr7:97577266	G	A	106	0.160	89	65.989	8.530	17	68.471	3.484	89	17	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--7	chr7:97577266	G	A	103	0.330	69	68.319	3.636	34	67.706	3.606	69	34	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--GL	chr7:97577266	G	NA	118	0	118	68.331	3.379	0	0	0	118	0	ASNS(dist=75412),MGC72080(dist=18642)	intergenic	NA
RCC_T5--1	chr7:99703163	G	NA	28	0	27	63.000	12.332	0	0	0	27	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--2	chr7:99703163	G	NA	38	0	38	63.763	11.542	0	0	0	38	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--3	chr7:99703163	G	NA	33	0	33	67.091	4.118	0	0	0	33	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--4	chr7:99703163	G	A	28	0.143	24	67.542	4.403	4	65.500	7.416	24	4	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--5	chr7:99703163	G	NA	35	0	35	66.914	6.938	0	0	0	35	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--6	chr7:99703163	G	NA	37	0	37	65.162	8.865	0	0	0	37	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--7	chr7:99703163	G	NA	26	0	26	66.269	8.436	0	0	0	26	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--GL	chr7:99703163	G	NA	58	0	58	66.379	7.714	0	0	0	58	0	AP4M1(NM_004722:exon11:c.929+1G>A)	splicing	NA
RCC_T5--1	chr7:99998726	C	NA	42	0	42	63.429	8.788	0	0	0	42	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--2	chr7:99998726	C	NA	34	0	34	68.118	3.121	0	0	0	34	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--3	chr7:99998726	C	NA	39	0	39	65.103	7.973	0	0	0	39	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--4	chr7:99998726	C	A	34	0.118	30	67.833	3.075	4	65.750	0.500	30	4	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--5	chr7:99998726	C	NA	39	0	39	66.359	7.121	0	0	0	39	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--6	chr7:99998726	C	NA	19	0	19	68.421	4.325	0	0	0	19	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--7	chr7:99998726	C	NA	38	0	38	67.868	3.786	0	0	0	38	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr7:99998726	C	NA	45	0	45	67.289	3.641	0	0	0	45	0	ZCWPW1	exonic	nonsynonymous_SNV
RCC_T5--1	chr8:101589065	T	NA	24	0	24	58.833	9.770	0	0	0	24	0	SNX31	intronic	NA
RCC_T5--2	chr8:101589065	T	NA	23	0	23	63.826	3.725	0	0	0	23	0	SNX31	intronic	NA
RCC_T5--3	chr8:101589065	T	NA	24	0	24	59.625	8.500	0	0	0	24	0	SNX31	intronic	NA
RCC_T5--4	chr8:101589065	T	NA	27	0	27	62.111	9.061	0	0	0	27	0	SNX31	intronic	NA
RCC_T5--5	chr8:101589065	T	G	19	0.211	15	64.400	3.439	4	37.500	3.000	15	4	SNX31	intronic	NA
RCC_T5--6	chr8:101589065	T	NA	23	0	22	60.818	8.438	0	0	0	22	0	SNX31	intronic	NA
RCC_T5--7	chr8:101589065	T	NA	20	0	20	62.750	7.055	0	0	0	20	0	SNX31	intronic	NA
RCC_T5--GL	chr8:101589065	T	NA	57	0	57	60.509	8.866	0	0	0	57	0	SNX31	intronic	NA
RCC_T5--1	chr8:101932955	T	A	105	0.171	87	63.609	8.375	18	64.111	6.230	87	18	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--2	chr8:101932955	T	A	125	0.008	124	64.992	8.717	1	63.000	0.000	124	1	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--3	chr8:101932955	T	NA	98	0	98	65.561	7.177	0	0	0	98	0	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--4	chr8:101932955	T	NA	156	0	156	66.442	7.144	0	0	0	156	0	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--5	chr8:101932955	T	A	96	0.094	87	65.816	7.236	9	64.333	6.062	87	9	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--6	chr8:101932955	T	NA	119	0	119	65.504	7.932	0	0	0	119	0	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--7	chr8:101932955	T	NA	138	0	138	65.080	7.856	0	0	0	138	0	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--GL	chr8:101932955	T	NA	160	0	160	66.125	6.785	0	0	0	160	0	YWHAZ	exonic	nonsynonymous_SNV
RCC_T5--1	chr8:10469196	T	G	19	0.211	15	60.333	6.821	4	37.000	6.164	15	4	RP1L1	exonic	synonymous_SNV
RCC_T5--2	chr8:10469196	T	NA	24	0	24	57.000	10.283	0	0	0	24	0	RP1L1	exonic	synonymous_SNV
RCC_T5--3	chr8:10469196	T	NA	20	0	19	58.737	9.219	0	0	0	19	0	RP1L1	exonic	synonymous_SNV
RCC_T5--4	chr8:10469196	T	G	26	0.038	24	56.542	11.865	1	39.000	0.000	24	1	RP1L1	exonic	synonymous_SNV
RCC_T5--5	chr8:10469196	T	NA	22	0	22	53.727	10.301	0	0	0	22	0	RP1L1	exonic	synonymous_SNV
RCC_T5--6	chr8:10469196	T	G	13	0.154	11	54.636	10.586	2	35.000	2.828	11	2	RP1L1	exonic	synonymous_SNV
RCC_T5--7	chr8:10469196	T	NA	28	0	28	59.643	7.558	0	0	0	28	0	RP1L1	exonic	synonymous_SNV
RCC_T5--GL	chr8:10469196	T	NA	38	0	38	55.079	12.262	0	0	0	38	0	RP1L1	exonic	synonymous_SNV
RCC_T5--1	chr8:118832108	G	NA	31	0	31	66.774	6.297	0	0	0	31	0	EXT1	intronic	NA
RCC_T5--2	chr8:118832108	G	NA	36	0	36	66.667	4.911	0	0	0	36	0	EXT1	intronic	NA
RCC_T5--3	chr8:118832108	G	NA	26	0	26	64.115	8.905	0	0	0	26	0	EXT1	intronic	NA
RCC_T5--4	chr8:118832108	G	A	33	0.121	29	69.241	3.259	4	68.000	0.000	29	4	EXT1	intronic	NA
RCC_T5--5	chr8:118832108	G	NA	36	0	36	66.056	5.242	0	0	0	36	0	EXT1	intronic	NA
RCC_T5--6	chr8:118832108	G	NA	17	0	17	67.824	4.667	0	0	0	17	0	EXT1	intronic	NA
RCC_T5--7	chr8:118832108	G	NA	26	0	26	66.500	8.833	0	0	0	26	0	EXT1	intronic	NA
RCC_T5--GL	chr8:118832108	G	NA	54	0	54	66.593	6.578	0	0	0	54	0	EXT1	intronic	NA
RCC_T5--1	chr8:125463574	C	T	70	0.029	68	64.397	9.550	2	62.500	3.536	68	2	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--2	chr8:125463574	C	T	54	0.074	50	65.520	6.453	4	57.500	17.059	50	4	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--3	chr8:125463574	C	T	46	0.130	40	67.875	4.262	6	67.500	3.834	40	6	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--4	chr8:125463574	C	T	71	0.127	62	67.306	5.733	9	66.444	4.773	62	9	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--5	chr8:125463574	C	T	66	0.152	56	64.857	8.851	10	67.800	2.741	56	10	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--6	chr8:125463574	C	T	45	0.111	40	64.725	8.864	5	70.200	1.789	40	5	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--7	chr8:125463574	C	T	64	0.359	41	67.610	6.461	23	64.261	6.084	41	23	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--GL	chr8:125463574	C	NA	78	0	76	65.671	6.988	0	0	0	76	0	TRMT12	exonic	nonsynonymous_SNV
RCC_T5--1	chr8:145736530	C	T	105	0.057	99	65.465	8.196	6	67.167	3.189	99	6	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--2	chr8:145736530	C	T	122	0.107	109	67.642	6.246	13	65.077	7.100	109	13	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--3	chr8:145736530	C	T	109	0.128	95	66.568	6.821	14	63.857	11.461	95	14	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--4	chr8:145736530	C	T	137	0.066	127	68.425	4.805	9	69.222	4.738	127	9	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--5	chr8:145736530	C	T	117	0.120	103	66.874	6.138	14	65.857	6.949	103	14	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--6	chr8:145736530	C	T	103	0.107	90	67.500	6.389	11	68.273	3.228	90	11	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--7	chr8:145736530	C	T	114	0.360	73	67.205	5.555	41	67.902	3.910	73	41	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr8:145736530	C	NA	142	0	142	67.169	7.366	0	0	0	142	0	MFSD3	exonic	nonsynonymous_SNV
RCC_T5--1	chr8:17171016	T	A	24	0.125	21	65.524	6.369	3	67.667	2.517	21	3	MTMR7	intronic	NA
RCC_T5--2	chr8:17171016	T	A	15	0.133	13	67.846	4.670	2	66.500	2.121	13	2	MTMR7	intronic	NA
RCC_T5--3	chr8:17171016	T	A	33	0.061	31	67.935	3.346	2	63.500	12.021	31	2	MTMR7	intronic	NA
RCC_T5--4	chr8:17171016	T	A	29	0.241	22	69.591	2.130	7	68.857	2.340	22	7	MTMR7	intronic	NA
RCC_T5--5	chr8:17171016	T	A	34	0.235	25	66.400	8.342	8	69.625	2.615	25	8	MTMR7	intronic	NA
RCC_T5--6	chr8:17171016	T	A	29	0.034	28	66.964	7.505	1	72.000	0.000	28	1	MTMR7	intronic	NA
RCC_T5--7	chr8:17171016	T	A	16	0.250	12	67.250	3.720	4	69.500	3.000	12	4	MTMR7	intronic	NA
RCC_T5--GL	chr8:17171016	T	NA	49	0	49	67.939	5.640	0	0	0	49	0	MTMR7	intronic	NA
RCC_T5--1	chr8:24299899	G	A	108	0.074	100	67.510	4.227	8	69.375	2.200	100	8	ADAM7	intronic	NA
RCC_T5--2	chr8:24299899	G	A	125	0.128	109	67.688	5.691	16	66.812	6.833	109	16	ADAM7	intronic	NA
RCC_T5--3	chr8:24299899	G	NA	87	0	87	65.897	7.631	0	0	0	87	0	ADAM7	intronic	NA
RCC_T5--4	chr8:24299899	G	NA	142	0	142	68.134	4.002	0	0	0	142	0	ADAM7	intronic	NA
RCC_T5--5	chr8:24299899	G	A	93	0.172	77	67.675	4.822	16	68.875	2.655	77	16	ADAM7	intronic	NA
RCC_T5--6	chr8:24299899	G	A	118	0.127	103	67.146	5.408	15	67.667	8.077	103	15	ADAM7	intronic	NA
RCC_T5--7	chr8:24299899	G	A	124	0.468	66	67.439	5.863	58	67.483	6.816	66	58	ADAM7	intronic	NA
RCC_T5--GL	chr8:24299899	G	NA	163	0	163	67.914	4.992	0	0	0	163	0	ADAM7	intronic	NA
RCC_T5--1	chr8:30610380	A	NA	11	0	11	68.091	4.011	0	0	0	11	0	UBXN8	intronic	NA
RCC_T5--2	chr8:30610380	A	C	19	0.158	16	69.688	2.089	3	69.667	4.041	16	3	UBXN8	intronic	NA
RCC_T5--3	chr8:30610380	A	NA	12	0	12	67.167	7.120	0	0	0	12	0	UBXN8	intronic	NA
RCC_T5--4	chr8:30610380	A	C	20	0.050	19	70.421	1.539	1	61.000	0.000	19	1	UBXN8	intronic	NA
RCC_T5--5	chr8:30610380	A	C	19	0.211	15	70.267	2.120	4	64.500	11.790	15	4	UBXN8	intronic	NA
RCC_T5--6	chr8:30610380	A	NA	13	0	13	65.692	8.390	0	0	0	13	0	UBXN8	intronic	NA
RCC_T5--7	chr8:30610380	A	C	11	0.182	9	69.111	3.333	2	70.000	2.828	9	2	UBXN8	intronic	NA
RCC_T5--GL	chr8:30610380	A	NA	44	0	44	67.523	5.060	0	0	0	44	0	UBXN8	intronic	NA
RCC_T5--1	chr8:35608432	A	C	22	0.136	19	54.211	13.126	3	41.333	9.713	19	3	UNC5D	intronic	NA
RCC_T5--2	chr8:35608432	A	C	22	0.227	17	56.765	9.100	5	44.200	6.686	17	5	UNC5D	intronic	NA
RCC_T5--3	chr8:35608432	A	C	29	0.172	24	50.583	11.010	5	38.400	4.775	24	5	UNC5D	intronic	NA
RCC_T5--4	chr8:35608432	A	C	40	0.025	39	59.026	10.248	1	60.000	0.000	39	1	UNC5D	intronic	NA
RCC_T5--5	chr8:35608432	A	NA	29	0	29	56.034	11.673	0	0	0	29	0	UNC5D	intronic	NA
RCC_T5--6	chr8:35608432	A	C	28	0.250	21	57.048	10.062	7	39.571	5.503	21	7	UNC5D	intronic	NA
RCC_T5--7	chr8:35608432	A	C	34	0.029	33	60.182	8.862	1	42.000	0.000	33	1	UNC5D	intronic	NA
RCC_T5--GL	chr8:35608432	A	NA	47	0	47	58.915	9.523	0	0	0	47	0	UNC5D	intronic	NA
RCC_T5--1	chr8:6577139	C	NA	22	0	22	68.409	3.621	0	0	0	22	0	AGPAT5	intronic	NA
RCC_T5--2	chr8:6577139	C	NA	26	0	26	70.308	2.429	0	0	0	26	0	AGPAT5	intronic	NA
RCC_T5--3	chr8:6577139	C	NA	18	0	18	68.889	5.109	0	0	0	18	0	AGPAT5	intronic	NA
RCC_T5--4	chr8:6577139	C	A	30	0.133	26	67.000	7.833	4	68.750	3.775	26	4	AGPAT5	intronic	NA
RCC_T5--5	chr8:6577139	C	NA	14	0	14	68.429	4.327	0	0	0	14	0	AGPAT5	intronic	NA
RCC_T5--6	chr8:6577139	C	NA	15	0	15	65.800	10.631	0	0	0	15	0	AGPAT5	intronic	NA
RCC_T5--7	chr8:6577139	C	NA	16	0	16	69.812	2.482	0	0	0	16	0	AGPAT5	intronic	NA
RCC_T5--GL	chr8:6577139	C	NA	37	0	37	68.703	3.415	0	0	0	37	0	AGPAT5	intronic	NA
RCC_T5--1	chr8:99140771	A	G	55	0.073	51	63.647	9.073	4	66.250	5.560	51	4	POP1	intronic	NA
RCC_T5--2	chr8:99140771	A	G	70	0.171	58	67.172	4.698	12	64.417	9.568	58	12	POP1	intronic	NA
RCC_T5--3	chr8:99140771	A	G	51	0.098	46	65.913	8.118	5	65.400	9.209	46	5	POP1	intronic	NA
RCC_T5--4	chr8:99140771	A	G	90	0.122	79	67.114	5.122	11	66.909	6.348	79	11	POP1	intronic	NA
RCC_T5--5	chr8:99140771	A	G	51	0.118	45	67.422	4.629	6	64.667	12.925	45	6	POP1	intronic	NA
RCC_T5--6	chr8:99140771	A	G	59	0.085	54	67.352	6.423	5	65.800	7.085	54	5	POP1	intronic	NA
RCC_T5--7	chr8:99140771	A	G	56	0.250	42	66.929	6.395	14	68.071	3.316	42	14	POP1	intronic	NA
RCC_T5--GL	chr8:99140771	A	NA	88	0	88	65.000	7.637	0	0	0	88	0	POP1	intronic	NA
RCC_T5--1	chr9:100983285	G	T	32	0.281	23	62.000	9.549	9	67.889	3.723	23	9	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:100983285	G	T	21	0.095	19	63.947	7.531	2	63.500	2.121	19	2	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:100983285	G	NA	13	0	13	62.308	9.818	0	0	0	13	0	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:100983285	G	T	30	0.133	26	66.923	3.381	4	71.000	0.816	26	4	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:100983285	G	T	19	0.316	13	66.615	3.863	6	66.833	2.787	13	6	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:100983285	G	T	29	0.241	22	63.182	9.845	7	64.571	2.699	22	7	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:100983285	G	T	21	0.381	13	64.077	9.725	8	65.500	3.423	13	8	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:100983285	G	NA	44	0	44	67.295	3.296	0	0	0	44	0	TBC1D2	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:101748174	C	NA	61	0	61	65.459	7.300	0	0	0	61	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:101748174	C	G	67	0.134	58	65.276	9.269	9	64.222	4.549	58	9	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:101748174	C	NA	41	0	41	65.220	8.254	0	0	0	41	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:101748174	C	NA	62	0	62	66.532	6.253	0	0	0	62	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:101748174	C	NA	52	0	52	62.692	9.703	0	0	0	52	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:101748174	C	NA	38	0	38	66.974	4.951	0	0	0	38	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:101748174	C	NA	58	0	58	65.500	7.628	0	0	0	58	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:101748174	C	NA	68	0	68	64.647	7.429	0	0	0	68	0	COL15A1	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:114326596	A	C	24	0.208	18	70.167	2.526	5	65.600	2.510	18	5	PTGR1,ZNF483	intronic	NA
RCC_T5--2	chr9:114326596	A	C	32	0.031	31	69.484	3.118	1	65.000	0.000	31	1	PTGR1,ZNF483	intronic	NA
RCC_T5--3	chr9:114326596	A	C	26	0.038	25	68.360	3.785	1	68.000	0.000	25	1	PTGR1,ZNF483	intronic	NA
RCC_T5--4	chr9:114326596	A	C	30	0.200	24	69.875	2.787	6	66.833	1.722	24	6	PTGR1,ZNF483	intronic	NA
RCC_T5--5	chr9:114326596	A	C	23	0.174	19	69.211	2.149	4	62.750	1.708	19	4	PTGR1,ZNF483	intronic	NA
RCC_T5--6	chr9:114326596	A	C	28	0.071	25	69.280	3.323	2	63.500	2.121	25	2	PTGR1,ZNF483	intronic	NA
RCC_T5--7	chr9:114326596	A	C	28	0.036	27	67.889	6.664	1	68.000	0.000	27	1	PTGR1,ZNF483	intronic	NA
RCC_T5--GL	chr9:114326596	A	NA	54	0	54	69.037	5.147	0	0	0	54	0	PTGR1,ZNF483	intronic	NA
RCC_T5--1	chr9:123671731	C	T	59	0.271	43	61.674	9.491	16	66.938	4.768	43	16	TRAF1	intronic	NA
RCC_T5--2	chr9:123671731	C	T	58	0.224	44	66.773	5.053	13	66.154	6.938	44	13	TRAF1	intronic	NA
RCC_T5--3	chr9:123671731	C	T	47	0.021	46	66.326	6.887	1	70.000	0.000	46	1	TRAF1	intronic	NA
RCC_T5--4	chr9:123671731	C	T	58	0.172	48	66.583	7.252	10	67.300	3.199	48	10	TRAF1	intronic	NA
RCC_T5--5	chr9:123671731	C	T	62	0.210	49	66.469	5.156	13	66.615	3.203	49	13	TRAF1	intronic	NA
RCC_T5--6	chr9:123671731	C	T	42	0.214	33	67.273	5.234	9	66.556	7.143	33	9	TRAF1	intronic	NA
RCC_T5--7	chr9:123671731	C	T	40	0.325	27	66.741	4.364	13	68.000	3.109	27	13	TRAF1	intronic	NA
RCC_T5--GL	chr9:123671731	C	NA	85	0	85	67.576	4.712	0	0	0	85	0	TRAF1	intronic	NA
RCC_T5--1	chr9:130551780	T	C	31	0.097	28	50.571	14.054	3	33.000	0.000	28	3	CDK9	exonic	synonymous_SNV
RCC_T5--2	chr9:130551780	T	C	32	0.062	30	55.800	12.829	2	34.500	2.121	30	2	CDK9	exonic	synonymous_SNV
RCC_T5--3	chr9:130551780	T	C	27	0.185	22	55.136	14.113	5	41.400	12.818	22	5	CDK9	exonic	synonymous_SNV
RCC_T5--4	chr9:130551780	T	C	32	0.094	28	61.607	9.008	3	33.000	0.000	28	3	CDK9	exonic	synonymous_SNV
RCC_T5--5	chr9:130551780	T	C	34	0.029	33	61.212	10.114	1	33.000	0.000	33	1	CDK9	exonic	synonymous_SNV
RCC_T5--6	chr9:130551780	T	C	21	0.143	18	55.722	12.611	3	33.000	0.000	18	3	CDK9	exonic	synonymous_SNV
RCC_T5--7	chr9:130551780	T	NA	32	0	32	56.906	11.017	0	0	0	32	0	CDK9	exonic	synonymous_SNV
RCC_T5--GL	chr9:130551780	T	NA	52	0	52	58.596	10.368	0	0	0	52	0	CDK9	exonic	synonymous_SNV
RCC_T5--1	chr9:131207250	G	NA	18	0	18	67.056	4.179	0	0	0	18	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--2	chr9:131207250	G	NA	19	0	19	68.263	3.070	0	0	0	19	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--3	chr9:131207250	G	NA	14	0	14	62.714	11.828	0	0	0	14	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--4	chr9:131207250	G	NA	16	0	16	65.250	9.320	0	0	0	16	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--5	chr9:131207250	G	NA	16	0	16	66.125	9.451	0	0	0	16	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--6	chr9:131207250	G	T	10	0.200	8	63.375	12.750	2	70.000	2.828	8	2	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--7	chr9:131207250	G	NA	16	0	16	67.375	3.998	0	0	0	16	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--GL	chr9:131207250	G	NA	43	0	43	67.116	6.953	0	0	0	43	0	CERCAM(dist=7620),ODF2(dist=10184)	intergenic	NA
RCC_T5--1	chr9:133507596	C	NA	19	0	19	67.474	3.611	0	0	0	19	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:133507596	C	NA	20	0	20	66.700	3.895	0	0	0	20	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:133507596	C	NA	21	0	21	66.048	4.811	0	0	0	21	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:133507596	C	A	31	0.129	27	67.963	4.033	4	56.250	15.945	27	4	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:133507596	C	NA	21	0	21	65.143	8.522	0	0	0	21	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:133507596	C	NA	20	0	20	62.900	7.907	0	0	0	20	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:133507596	C	NA	32	0	32	65.688	7.429	0	0	0	32	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:133507596	C	NA	42	0	42	66.119	6.356	0	0	0	42	0	FUBP3	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:133755645	A	C	18	0.056	16	55.875	9.458	1	33.000	0.000	16	1	ABL1	intronic	NA
RCC_T5--2	chr9:133755645	A	C	16	0.062	15	51.733	13.280	1	33.000	0.000	15	1	ABL1	intronic	NA
RCC_T5--3	chr9:133755645	A	C	20	0.050	19	53.789	11.693	1	59.000	0.000	19	1	ABL1	intronic	NA
RCC_T5--4	chr9:133755645	A	C	22	0.045	21	53.857	11.573	1	33.000	0.000	21	1	ABL1	intronic	NA
RCC_T5--5	chr9:133755645	A	C	29	0.103	26	56.154	10.993	3	38.333	4.619	26	3	ABL1	intronic	NA
RCC_T5--6	chr9:133755645	A	C	22	0.318	14	56.071	8.278	7	37.286	5.057	14	7	ABL1	intronic	NA
RCC_T5--7	chr9:133755645	A	C	21	0.048	20	56.200	10.875	1	57.000	0.000	20	1	ABL1	intronic	NA
RCC_T5--GL	chr9:133755645	A	NA	36	0	36	55.833	11.413	0	0	0	36	0	ABL1	intronic	NA
RCC_T5--1	chr9:135536738	C	T	30	0.233	23	65.652	8.020	7	66.714	4.572	23	7	DDX31	intronic	NA
RCC_T5--2	chr9:135536738	C	T	38	0.079	35	68.114	3.810	3	68.000	2.646	35	3	DDX31	intronic	NA
RCC_T5--3	chr9:135536738	C	T	38	0.289	27	66.963	4.816	11	67.909	3.239	27	11	DDX31	intronic	NA
RCC_T5--4	chr9:135536738	C	T	36	0.139	31	67.742	3.983	5	71.000	1.414	31	5	DDX31	intronic	NA
RCC_T5--5	chr9:135536738	C	T	29	0.207	23	67.783	4.221	6	70.500	1.049	23	6	DDX31	intronic	NA
RCC_T5--6	chr9:135536738	C	T	29	0.103	26	65.423	7.278	3	71.333	1.155	26	3	DDX31	intronic	NA
RCC_T5--7	chr9:135536738	C	T	37	0.297	26	68.500	3.922	11	66.273	4.692	26	11	DDX31	intronic	NA
RCC_T5--GL	chr9:135536738	C	NA	54	0	54	66.759	7.563	0	0	0	54	0	DDX31	intronic	NA
RCC_T5--1	chr9:136517310	C	NA	21	0	21	58.333	9.489	0	0	0	21	0	DBH	intronic	NA
RCC_T5--2	chr9:136517310	C	NA	21	0	21	57.095	8.461	0	0	0	21	0	DBH	intronic	NA
RCC_T5--3	chr9:136517310	C	NA	16	0	16	54.750	12.620	0	0	0	16	0	DBH	intronic	NA
RCC_T5--4	chr9:136517310	C	A	27	0.148	23	58.435	7.896	4	59.000	8.124	23	4	DBH	intronic	NA
RCC_T5--5	chr9:136517310	C	NA	23	0	23	54.870	10.350	0	0	0	23	0	DBH	intronic	NA
RCC_T5--6	chr9:136517310	C	NA	26	0	26	58.269	8.893	0	0	0	26	0	DBH	intronic	NA
RCC_T5--7	chr9:136517310	C	NA	31	0	31	56.032	10.419	0	0	0	31	0	DBH	intronic	NA
RCC_T5--GL	chr9:136517310	C	NA	33	0	33	58.394	11.189	0	0	0	33	0	DBH	intronic	NA
RCC_T5--1	chr9:136635515	A	NA	27	0	27	58.259	11.892	0	0	0	27	0	VAV2	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:136635515	A	G	23	0.087	21	62.048	8.588	2	33.000	0.000	21	2	VAV2	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:136635515	A	G	22	0.182	17	60.941	11.432	4	33.000	0.000	17	4	VAV2	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:136635515	A	G	41	0.098	37	59.568	10.836	4	34.250	2.500	37	4	VAV2	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:136635515	A	G	37	0.216	29	60.276	11.361	8	33.625	1.768	29	8	VAV2	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:136635515	A	G	30	0.200	24	58.667	10.218	6	35.167	5.307	24	6	VAV2	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:136635515	A	G	43	0.140	37	58.216	10.848	6	33.833	2.041	37	6	VAV2	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:136635515	A	NA	45	0	45	57.911	11.495	0	0	0	45	0	VAV2	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:138650218	T	G	32	0.062	30	49.467	11.679	2	35.000	2.828	30	2	KCNT1	intronic	NA
RCC_T5--2	chr9:138650218	T	G	33	0.182	27	51.519	9.677	6	36.333	3.670	27	6	KCNT1	intronic	NA
RCC_T5--3	chr9:138650218	T	G	24	0.167	19	55.211	11.307	4	39.500	5.508	19	4	KCNT1	intronic	NA
RCC_T5--4	chr9:138650218	T	G	36	0.083	33	51.394	10.940	3	35.000	1.732	33	3	KCNT1	intronic	NA
RCC_T5--5	chr9:138650218	T	G	32	0.188	26	49.000	11.349	6	35.833	3.920	26	6	KCNT1	intronic	NA
RCC_T5--6	chr9:138650218	T	G	38	0.237	29	49.828	11.947	9	36.889	5.555	29	9	KCNT1	intronic	NA
RCC_T5--7	chr9:138650218	T	G	35	0.171	29	50.414	9.995	6	34.833	2.041	29	6	KCNT1	intronic	NA
RCC_T5--GL	chr9:138650218	T	NA	39	0	39	54.103	10.959	0	0	0	39	0	KCNT1	intronic	NA
RCC_T5--1	chr9:138675892	A	NA	32	0	32	67.031	5.970	0	0	0	32	0	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:138675892	A	NA	22	0	22	65.955	8.443	0	0	0	22	0	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:138675892	A	NA	24	0	24	64.833	6.485	0	0	0	24	0	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:138675892	A	NA	32	0	32	66.188	6.255	0	0	0	32	0	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:138675892	A	C	34	0.147	29	64.828	10.804	5	33.600	1.342	29	5	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:138675892	A	C	30	0.033	29	60.379	13.375	1	43.000	0.000	29	1	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:138675892	A	C	46	0.239	35	61.029	13.281	11	33.545	1.214	35	11	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:138675892	A	NA	35	0	35	61.629	10.849	0	0	0	35	0	KCNT1	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:139345793	G	NA	21	0	21	62.333	10.910	0	0	0	21	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:139345793	G	NA	13	0	13	59.769	13.039	0	0	0	13	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:139345793	G	NA	16	0	16	60.188	10.284	0	0	0	16	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:139345793	G	A	26	0.154	22	64.909	7.831	4	63.750	2.217	22	4	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:139345793	G	NA	20	0	20	58.650	13.597	0	0	0	20	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:139345793	G	NA	15	0	15	64.400	5.654	0	0	0	15	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:139345793	G	NA	17	0	17	56.647	13.633	0	0	0	17	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:139345793	G	NA	36	0	36	62.750	10.123	0	0	0	36	0	SEC16A	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:139903978	T	G	35	0.057	33	52.758	12.026	2	38.000	7.071	33	2	ABCA2	intronic	NA
RCC_T5--2	chr9:139903978	T	G	49	0.204	37	50.622	12.471	10	35.600	4.088	37	10	ABCA2	intronic	NA
RCC_T5--3	chr9:139903978	T	G	30	0.033	29	54.517	9.575	1	33.000	0.000	29	1	ABCA2	intronic	NA
RCC_T5--4	chr9:139903978	T	G	47	0.021	46	56.978	11.529	1	33.000	0.000	46	1	ABCA2	intronic	NA
RCC_T5--5	chr9:139903978	T	G	50	0.040	48	52.938	11.739	2	34.500	2.121	48	2	ABCA2	intronic	NA
RCC_T5--6	chr9:139903978	T	G	39	0.077	35	53.629	9.629	3	35.000	1.732	35	3	ABCA2	intronic	NA
RCC_T5--7	chr9:139903978	T	NA	44	0	44	54.886	11.985	0	0	0	44	0	ABCA2	intronic	NA
RCC_T5--GL	chr9:139903978	T	NA	45	0	45	54.556	11.593	0	0	0	45	0	ABCA2	intronic	NA
RCC_T5--1	chr9:140100181	A	G	32	0.062	30	54.000	10.518	2	35.000	2.828	30	2	NDOR1	UTR5	NA
RCC_T5--2	chr9:140100181	A	G	34	0.176	27	54.259	12.736	6	35.667	3.882	27	6	NDOR1	UTR5	NA
RCC_T5--3	chr9:140100181	A	G	24	0.125	21	54.810	13.254	3	46.333	9.292	21	3	NDOR1	UTR5	NA
RCC_T5--4	chr9:140100181	A	G	34	0.059	32	56.094	10.221	2	42.500	9.192	32	2	NDOR1	UTR5	NA
RCC_T5--5	chr9:140100181	A	G	37	0.027	35	56.400	10.094	1	33.000	0.000	35	1	NDOR1	UTR5	NA
RCC_T5--6	chr9:140100181	A	G	36	0.083	33	54.758	11.882	3	35.333	2.082	33	3	NDOR1	UTR5	NA
RCC_T5--7	chr9:140100181	A	G	38	0.053	36	54.361	12.401	2	38.000	7.071	36	2	NDOR1	UTR5	NA
RCC_T5--GL	chr9:140100181	A	NA	42	0	42	61.500	7.900	0	0	0	42	0	NDOR1	UTR5	NA
RCC_T5--1	chr9:140108916	T	G	40	0.075	27	64.407	5.583	3	54.333	18.502	27	3	NDOR1	intronic	NA
RCC_T5--2	chr9:140108916	T	G	43	0.023	24	64.750	6.340	1	65.000	0.000	24	1	NDOR1	intronic	NA
RCC_T5--3	chr9:140108916	T	G	54	0.111	20	65.500	5.558	6	58.500	13.398	20	6	NDOR1	intronic	NA
RCC_T5--4	chr9:140108916	T	NA	51	0	30	65.900	5.486	0	0	0	30	0	NDOR1	intronic	NA
RCC_T5--5	chr9:140108916	T	G	55	0.018	32	63.719	8.325	1	37.000	0.000	32	1	NDOR1	intronic	NA
RCC_T5--6	chr9:140108916	T	G	52	0.096	27	64.963	8.300	5	64.800	3.271	27	5	NDOR1	intronic	NA
RCC_T5--7	chr9:140108916	T	G	39	0.051	19	66.579	5.146	2	62.000	0.000	19	2	NDOR1	intronic	NA
RCC_T5--GL	chr9:140108916	T	NA	65	0	36	66.722	4.879	0	0	0	36	0	NDOR1	intronic	NA
RCC_T5--1	chr9:140127273	G	T	43	0.047	41	59.805	8.776	2	39.000	1.414	41	2	SLC34A3	exonic	synonymous_SNV
RCC_T5--2	chr9:140127273	G	NA	29	0	29	62.517	6.473	0	0	0	29	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--3	chr9:140127273	G	T	24	0.167	20	58.050	12.951	4	42.000	9.309	20	4	SLC34A3	exonic	synonymous_SNV
RCC_T5--4	chr9:140127273	G	NA	27	0	27	61.852	6.591	0	0	0	27	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--5	chr9:140127273	G	NA	42	0	42	58.810	9.868	0	0	0	42	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--6	chr9:140127273	G	NA	21	0	21	62.238	9.746	0	0	0	21	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--7	chr9:140127273	G	NA	25	0	25	62.040	8.571	0	0	0	25	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--GL	chr9:140127273	G	NA	43	0	43	63.256	7.786	0	0	0	43	0	SLC34A3	exonic	synonymous_SNV
RCC_T5--1	chr9:2820159	C	G	40	0.350	26	66.692	5.214	14	66.857	6.643	26	14	KIAA0020	intronic	NA
RCC_T5--2	chr9:2820159	C	G	24	0.083	22	66.409	7.055	2	67.500	6.364	22	2	KIAA0020	intronic	NA
RCC_T5--3	chr9:2820159	C	G	37	0.081	34	67.559	3.767	3	69.000	2.646	34	3	KIAA0020	intronic	NA
RCC_T5--4	chr9:2820159	C	G	37	0.108	33	67.818	4.027	4	58.750	13.672	33	4	KIAA0020	intronic	NA
RCC_T5--5	chr9:2820159	C	G	41	0.244	31	65.194	5.816	10	67.900	2.601	31	10	KIAA0020	intronic	NA
RCC_T5--6	chr9:2820159	C	G	35	0.229	27	66.296	5.539	8	70.125	2.475	27	8	KIAA0020	intronic	NA
RCC_T5--7	chr9:2820159	C	G	32	0.344	21	68.476	2.015	11	67.727	3.319	21	11	KIAA0020	intronic	NA
RCC_T5--GL	chr9:2820159	C	NA	47	0	47	66.213	6.206	0	0	0	47	0	KIAA0020	intronic	NA
RCC_T5--1	chr9:79986065	G	C	94	0.213	73	65.014	8.432	20	68.900	2.614	73	20	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:79986065	G	C	79	0.215	62	66.226	8.251	17	66.000	5.646	62	17	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:79986065	G	C	92	0.130	80	65.675	8.378	12	66.583	6.317	80	12	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:79986065	G	C	120	0.142	103	67.592	5.362	17	68.059	3.473	103	17	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:79986065	G	C	111	0.207	88	66.670	6.505	23	68.087	4.166	88	23	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:79986065	G	C	99	0.232	75	65.987	7.305	23	67.522	8.442	75	23	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:79986065	G	C	102	0.343	67	66.642	6.414	35	65.571	6.840	67	35	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:79986065	G	NA	111	0	111	67.820	6.058	0	0	0	111	0	VPS13A	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:84228476	T	C	31	0.194	25	57.280	11.731	6	35.667	2.944	25	6	TLE1	intronic	NA
RCC_T5--2	chr9:84228476	T	C	46	0.196	37	55.351	12.495	9	36.000	3.674	37	9	TLE1	intronic	NA
RCC_T5--3	chr9:84228476	T	C	28	0.071	24	55.833	12.096	2	46.500	19.092	24	2	TLE1	intronic	NA
RCC_T5--4	chr9:84228476	T	C	65	0.015	63	55.825	11.693	1	38.000	0.000	63	1	TLE1	intronic	NA
RCC_T5--5	chr9:84228476	T	C	53	0.113	46	52.739	12.788	6	37.000	3.098	46	6	TLE1	intronic	NA
RCC_T5--6	chr9:84228476	T	C	42	0.048	40	54.775	12.636	2	38.500	0.707	40	2	TLE1	intronic	NA
RCC_T5--7	chr9:84228476	T	C	43	0.047	41	57.707	11.096	2	38.500	0.707	41	2	TLE1	intronic	NA
RCC_T5--GL	chr9:84228476	T	NA	52	0	52	56.750	10.557	0	0	0	52	0	TLE1	intronic	NA
RCC_T5--1	chr9:90252929	T	G	136	0.169	113	67.336	5.959	23	66.478	5.814	113	23	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--2	chr9:90252929	T	G	114	0.167	95	68.316	4.611	19	64.421	9.063	95	19	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--3	chr9:90252929	T	G	130	0.046	124	65.839	7.744	6	68.833	2.927	124	6	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--4	chr9:90252929	T	G	114	0.149	97	67.598	5.556	17	68.647	3.372	97	17	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--5	chr9:90252929	T	G	150	0.180	123	67.813	6.378	27	67.296	7.564	123	27	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--6	chr9:90252929	T	G	101	0.178	83	68.530	3.597	18	68.833	2.792	83	18	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--7	chr9:90252929	T	G	145	0.303	101	68.188	3.571	44	68.159	3.556	101	44	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--GL	chr9:90252929	T	NA	131	0	131	67.244	5.512	0	0	0	131	0	DAPK1	exonic	nonsynonymous_SNV
RCC_T5--1	chr9:95618657	C	A	36	0.111	32	51.906	12.491	4	58.500	17.407	32	4	ZNF484	intronic	NA
RCC_T5--2	chr9:95618657	C	A	41	0.171	34	53.794	10.691	7	57.143	14.611	34	7	ZNF484	intronic	NA
RCC_T5--3	chr9:95618657	C	A	46	0.087	42	51.500	10.712	4	50.000	19.782	42	4	ZNF484	intronic	NA
RCC_T5--4	chr9:95618657	C	A	35	0.086	32	52.812	10.715	3	55.667	19.655	32	3	ZNF484	intronic	NA
RCC_T5--5	chr9:95618657	C	A	41	0.122	36	58.333	8.339	5	65.000	2.646	36	5	ZNF484	intronic	NA
RCC_T5--6	chr9:95618657	C	A	32	0.062	30	54.967	11.984	2	49.500	23.335	30	2	ZNF484	intronic	NA
RCC_T5--7	chr9:95618657	C	NA	53	0	51	57.569	9.424	0	0	0	51	0	ZNF484	intronic	NA
RCC_T5--GL	chr9:95618657	C	NA	63	0	60	55.350	11.669	0	0	0	60	0	ZNF484	intronic	NA
RCC_T5--1	chr9:95683848	A	C	17	0.176	14	63.000	5.738	3	40.667	4.619	14	3	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--2	chr9:95683848	A	C	23	0.043	22	57.727	9.392	1	33.000	0.000	22	1	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--3	chr9:95683848	A	NA	22	0	22	57.545	13.934	0	0	0	22	0	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--4	chr9:95683848	A	NA	27	0	26	61.346	7.321	0	0	0	26	0	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--5	chr9:95683848	A	NA	18	0	18	58.333	8.395	0	0	0	18	0	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--6	chr9:95683848	A	C	21	0.048	20	61.450	7.837	1	33.000	0.000	20	1	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--7	chr9:95683848	A	C	20	0.050	19	58.895	8.419	1	33.000	0.000	19	1	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--GL	chr9:95683848	A	NA	34	0	34	64.647	4.644	0	0	0	34	0	ZNF484(dist=43528),FGD3(dist=25753)	intergenic	NA
RCC_T5--1	chr9:97887293	G	A	33	0.152	28	67.429	4.229	5	69.400	2.074	28	5	FANCC	intronic	NA
RCC_T5--2	chr9:97887293	G	A	23	0.130	20	65.950	8.256	3	70.333	2.082	20	3	FANCC	intronic	NA
RCC_T5--3	chr9:97887293	G	A	27	0.185	22	67.364	3.971	5	69.200	2.588	22	5	FANCC	intronic	NA
RCC_T5--4	chr9:97887293	G	A	31	0.161	26	67.808	6.675	5	69.000	4.243	26	5	FANCC	intronic	NA
RCC_T5--5	chr9:97887293	G	A	26	0.077	24	67.292	5.312	2	69.000	2.828	24	2	FANCC	intronic	NA
RCC_T5--6	chr9:97887293	G	A	31	0.032	30	68.667	3.585	1	72.000	0.000	30	1	FANCC	intronic	NA
RCC_T5--7	chr9:97887293	G	A	27	0.222	21	68.714	3.862	6	69.333	4.082	21	6	FANCC	intronic	NA
RCC_T5--GL	chr9:97887293	G	NA	36	0	36	67.500	3.582	0	0	0	36	0	FANCC	intronic	NA
RCC_T5--1	chr9:99919194	T	G	26	0.192	20	56.250	11.187	5	38.800	4.712	20	5	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--2	chr9:99919194	T	G	18	0.056	17	54.471	9.063	1	37.000	0.000	17	1	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--3	chr9:99919194	T	G	29	0.069	27	55.259	10.879	2	49.500	14.849	27	2	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--4	chr9:99919194	T	NA	33	0	33	60.818	6.322	0	0	0	33	0	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--5	chr9:99919194	T	G	27	0.148	22	52.818	12.034	4	37.750	0.957	22	4	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--6	chr9:99919194	T	G	23	0.087	21	57.190	11.643	2	39.000	0.000	21	2	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--7	chr9:99919194	T	G	38	0.026	36	59.472	8.436	1	37.000	0.000	36	1	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T5--GL	chr9:99919194	T	NA	36	0	36	60.167	8.467	0	0	0	36	0	LOC340508(dist=74967),LOC100499484-C9ORF174(dist=81514)	intergenic	NA
RCC_T6--1	chr10:115922808	C	NA	187	0	187	68.647	4.804	0	0	0	187	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--2	chr10:115922808	C	NA	224	0	224	68.826	5.272	0	0	0	224	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--3	chr10:115922808	C	NA	213	0	213	68.117	5.137	0	0	0	213	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--4	chr10:115922808	C	NA	206	0	206	68.053	5.277	0	0	0	206	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--5	chr10:115922808	C	NA	202	0	202	69.262	3.053	0	0	0	202	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--6	chr10:115922808	C	A	178	0.275	129	66.736	7.650	49	69.306	3.084	129	49	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--7	chr10:115922808	C	NA	229	0	228	68.237	4.740	0	0	0	228	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--8	chr10:115922808	C	A	212	0.014	209	68.139	5.587	3	69.667	4.041	209	3	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--GL	chr10:115922808	C	NA	222	0	221	68.176	5.667	0	0	0	221	0	C10orf118	exonic	nonsynonymous_SNV
RCC_T6--1	chr10:121436472	A	C	39	0.154	32	63.594	10.019	6	40.167	8.909	32	6	BAG3	exonic	nonsynonymous_SNV
RCC_T6--2	chr10:121436472	A	C	51	0.137	44	65.182	7.098	7	36.571	4.614	44	7	BAG3	exonic	nonsynonymous_SNV
RCC_T6--3	chr10:121436472	A	C	43	0.186	35	61.143	12.243	8	36.125	4.454	35	8	BAG3	exonic	nonsynonymous_SNV
RCC_T6--4	chr10:121436472	A	C	30	0.100	27	64.667	6.777	3	34.333	2.309	27	3	BAG3	exonic	nonsynonymous_SNV
RCC_T6--5	chr10:121436472	A	C	38	0.026	37	65.541	8.418	1	33.000	0.000	37	1	BAG3	exonic	nonsynonymous_SNV
RCC_T6--6	chr10:121436472	A	C	33	0.091	30	63.100	9.960	3	35.667	2.309	30	3	BAG3	exonic	nonsynonymous_SNV
RCC_T6--7	chr10:121436472	A	C	31	0.065	29	65.379	7.599	2	33.000	0.000	29	2	BAG3	exonic	nonsynonymous_SNV
RCC_T6--8	chr10:121436472	A	C	45	0.089	40	63.100	11.213	4	35.000	2.309	40	4	BAG3	exonic	nonsynonymous_SNV
RCC_T6--GL	chr10:121436472	A	NA	36	0	35	64.057	10.073	0	0	0	35	0	BAG3	exonic	nonsynonymous_SNV
RCC_T6--1	chr10:124914638	C	NA	30	0	30	65.200	4.895	0	0	0	30	0	BUB3	intronic	NA
RCC_T6--2	chr10:124914638	C	NA	35	0	35	62.486	7.633	0	0	0	35	0	BUB3	intronic	NA
RCC_T6--3	chr10:124914638	C	NA	45	0	45	62.333	9.518	0	0	0	45	0	BUB3	intronic	NA
RCC_T6--4	chr10:124914638	C	NA	38	0	37	60.946	11.038	0	0	0	37	0	BUB3	intronic	NA
RCC_T6--5	chr10:124914638	C	NA	31	0	31	65.194	3.781	0	0	0	31	0	BUB3	intronic	NA
RCC_T6--6	chr10:124914638	C	A	51	0.020	49	63.306	8.055	1	62.000	0.000	49	1	BUB3	intronic	NA
RCC_T6--7	chr10:124914638	C	A	31	0.129	27	63.704	8.818	4	58.750	5.620	27	4	BUB3	intronic	NA
RCC_T6--8	chr10:124914638	C	NA	41	0	41	64.098	7.439	0	0	0	41	0	BUB3	intronic	NA
RCC_T6--GL	chr10:124914638	C	NA	35	0	35	63.000	8.513	0	0	0	35	0	BUB3	intronic	NA
RCC_T6--1	chr10:124924486	T	C	51	0.137	27	67.778	7.329	7	64.571	1.134	27	7	BUB3	UTR3	NA
RCC_T6--2	chr10:124924486	T	C	78	0.051	51	67.784	3.466	4	63.250	4.349	51	4	BUB3	UTR3	NA
RCC_T6--3	chr10:124924486	T	C	56	0.054	33	68.364	2.748	3	61.667	0.577	33	3	BUB3	UTR3	NA
RCC_T6--4	chr10:124924486	T	C	49	0.041	25	67.560	3.969	2	64.000	2.828	25	2	BUB3	UTR3	NA
RCC_T6--5	chr10:124924486	T	C	43	0.047	18	68.056	3.077	2	65.000	0.000	18	2	BUB3	UTR3	NA
RCC_T6--6	chr10:124924486	T	C	61	0.016	31	66.806	4.143	1	62.000	0.000	31	1	BUB3	UTR3	NA
RCC_T6--7	chr10:124924486	T	C	52	0.077	24	67.667	3.266	4	64.000	1.633	24	4	BUB3	UTR3	NA
RCC_T6--8	chr10:124924486	T	C	43	0.023	22	68.273	2.272	1	61.000	0.000	22	1	BUB3	UTR3	NA
RCC_T6--GL	chr10:124924486	T	NA	66	0	37	67.405	3.460	0	0	0	37	0	BUB3	UTR3	NA
RCC_T6--1	chr10:17164760	A	NA	37	0	37	68.000	4.435	0	0	0	37	0	CUBN	intronic	NA
RCC_T6--2	chr10:17164760	A	C	52	0.077	48	67.188	7.761	4	50.500	20.207	48	4	CUBN	intronic	NA
RCC_T6--3	chr10:17164760	A	NA	24	0	24	65.458	11.371	0	0	0	24	0	CUBN	intronic	NA
RCC_T6--4	chr10:17164760	A	NA	22	0	21	68.524	5.066	0	0	0	21	0	CUBN	intronic	NA
RCC_T6--5	chr10:17164760	A	NA	35	0	34	68.853	3.552	0	0	0	34	0	CUBN	intronic	NA
RCC_T6--6	chr10:17164760	A	C	28	0.071	26	65.462	9.266	2	49.000	22.627	26	2	CUBN	intronic	NA
RCC_T6--7	chr10:17164760	A	C	36	0.222	28	64.321	13.292	8	45.125	16.788	28	8	CUBN	intronic	NA
RCC_T6--8	chr10:17164760	A	C	36	0.056	34	66.853	8.860	2	47.500	20.506	34	2	CUBN	intronic	NA
RCC_T6--GL	chr10:17164760	A	NA	38	0	38	67.605	6.737	0	0	0	38	0	CUBN	intronic	NA
RCC_T6--1	chr10:21875205	C	NA	29	0	29	67.759	8.052	0	0	0	29	0	MLLT10	intronic	NA
RCC_T6--2	chr10:21875205	C	T	31	0.032	30	60.967	13.008	1	53.000	0.000	30	1	MLLT10	intronic	NA
RCC_T6--3	chr10:21875205	C	T	17	0.059	16	66.688	9.127	1	33.000	0.000	16	1	MLLT10	intronic	NA
RCC_T6--4	chr10:21875205	C	T	17	0.118	15	62.400	12.642	2	33.000	0.000	15	2	MLLT10	intronic	NA
RCC_T6--5	chr10:21875205	C	T	28	0.071	26	61.577	11.290	2	47.500	20.506	26	2	MLLT10	intronic	NA
RCC_T6--6	chr10:21875205	C	T	23	0.130	20	67.450	5.916	3	65.333	1.155	20	3	MLLT10	intronic	NA
RCC_T6--7	chr10:21875205	C	T	31	0.161	25	68.240	6.139	5	63.400	2.608	25	5	MLLT10	intronic	NA
RCC_T6--8	chr10:21875205	C	T	33	0.061	31	64.871	9.301	2	50.500	24.749	31	2	MLLT10	intronic	NA
RCC_T6--GL	chr10:21875205	C	NA	35	0	35	63.400	11.049	0	0	0	35	0	MLLT10	intronic	NA
RCC_T6--1	chr10:72358486	A	T	34	0.118	30	63.433	7.964	4	62.250	3.403	30	4	PRF1	exonic	nonsynonymous_SNV
RCC_T6--2	chr10:72358486	A	NA	38	0	38	63.711	8.555	0	0	0	38	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--3	chr10:72358486	A	NA	34	0	33	62.485	6.477	0	0	0	33	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--4	chr10:72358486	A	NA	33	0	33	62.697	7.038	0	0	0	33	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--5	chr10:72358486	A	NA	26	0	26	65.077	5.844	0	0	0	26	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--6	chr10:72358486	A	NA	34	0	34	61.882	10.197	0	0	0	34	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--7	chr10:72358486	A	NA	51	0	51	63.275	8.127	0	0	0	51	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--8	chr10:72358486	A	NA	34	0	34	64.706	6.516	0	0	0	34	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr10:72358486	A	NA	39	0	39	60.974	8.940	0	0	0	39	0	PRF1	exonic	nonsynonymous_SNV
RCC_T6--1	chr10:75552465	G	NA	53	0	53	67.623	4.320	0	0	0	53	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--2	chr10:75552465	G	NA	39	0	39	67.051	6.501	0	0	0	39	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--3	chr10:75552465	G	NA	52	0	52	67.346	6.084	0	0	0	52	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--4	chr10:75552465	G	NA	45	0	45	66.178	8.614	0	0	0	45	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--5	chr10:75552465	G	C	59	0.136	51	66.059	9.479	8	68.750	3.694	51	8	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--6	chr10:75552465	G	NA	39	0	39	65.051	9.859	0	0	0	39	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--7	chr10:75552465	G	NA	53	0	53	66.660	7.580	0	0	0	53	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--8	chr10:75552465	G	NA	48	0	48	67.938	4.610	0	0	0	48	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--GL	chr10:75552465	G	NA	45	0	45	65.489	6.973	0	0	0	45	0	ZSWIM8	exonic	nonsynonymous_SNV
RCC_T6--1	chr10:92678758	T	A	64	0.078	31	68.613	6.265	5	64.600	2.510	31	5	ANKRD1	intronic	NA
RCC_T6--2	chr10:92678758	T	A	66	0.030	37	68.703	5.557	2	63.500	2.121	37	2	ANKRD1	intronic	NA
RCC_T6--3	chr10:92678758	T	NA	56	0	29	67.724	4.765	0	0	0	29	0	ANKRD1	intronic	NA
RCC_T6--4	chr10:92678758	T	NA	37	0	24	68.542	4.872	0	0	0	24	0	ANKRD1	intronic	NA
RCC_T6--5	chr10:92678758	T	NA	52	0	29	67.517	7.376	0	0	0	29	0	ANKRD1	intronic	NA
RCC_T6--6	chr10:92678758	T	A	54	0.037	29	66.931	6.665	2	49.000	22.627	29	2	ANKRD1	intronic	NA
RCC_T6--7	chr10:92678758	T	A	48	0.062	26	68.731	3.244	3	64.000	1.732	26	3	ANKRD1	intronic	NA
RCC_T6--8	chr10:92678758	T	A	60	0.017	34	68.265	4.195	1	33.000	0.000	34	1	ANKRD1	intronic	NA
RCC_T6--GL	chr10:92678758	T	NA	56	0	33	68.061	3.774	0	0	0	33	0	ANKRD1	intronic	NA
RCC_T6--1	chr10:93778521	T	C	158	0.025	91	67.868	6.639	4	65.000	0.000	91	4	BTAF1	intronic	NA
RCC_T6--2	chr10:93778521	T	C	139	0.036	72	68.806	5.054	5	61.200	5.404	72	5	BTAF1	intronic	NA
RCC_T6--3	chr10:93778521	T	C	117	0.009	60	66.600	5.406	1	64.000	0.000	60	1	BTAF1	intronic	NA
RCC_T6--4	chr10:93778521	T	C	92	0.022	51	67.706	4.066	2	61.000	5.657	51	2	BTAF1	intronic	NA
RCC_T6--5	chr10:93778521	T	C	134	0.022	66	68.318	5.717	3	62.667	4.041	66	3	BTAF1	intronic	NA
RCC_T6--6	chr10:93778521	T	C	114	0.026	58	66.241	6.386	3	64.000	1.732	58	3	BTAF1	intronic	NA
RCC_T6--7	chr10:93778521	T	C	132	0.106	69	68.304	3.512	14	62.714	2.894	69	14	BTAF1	intronic	NA
RCC_T6--8	chr10:93778521	T	NA	141	0	80	67.612	6.750	0	0	0	80	0	BTAF1	intronic	NA
RCC_T6--GL	chr10:93778521	T	NA	131	0	65	68.077	5.334	0	0	0	65	0	BTAF1	intronic	NA
RCC_T6--1	chr10:99358824	A	C	40	0.125	35	66.057	6.808	5	38.600	4.278	35	5	HOGA1	intronic	NA
RCC_T6--2	chr10:99358824	A	C	56	0.214	44	67.432	5.982	12	38.333	8.616	44	12	HOGA1	intronic	NA
RCC_T6--3	chr10:99358824	A	C	66	0.197	52	62.481	11.432	13	36.308	5.298	52	13	HOGA1	intronic	NA
RCC_T6--4	chr10:99358824	A	C	73	0.123	64	65.922	6.486	9	39.889	6.642	64	9	HOGA1	intronic	NA
RCC_T6--5	chr10:99358824	A	C	60	0.183	49	65.510	7.349	11	37.545	5.447	49	11	HOGA1	intronic	NA
RCC_T6--6	chr10:99358824	A	C	69	0.159	58	63.724	11.360	11	40.000	8.246	58	11	HOGA1	intronic	NA
RCC_T6--7	chr10:99358824	A	C	70	0.086	64	65.484	7.344	6	37.833	7.387	64	6	HOGA1	intronic	NA
RCC_T6--8	chr10:99358824	A	C	66	0.076	61	65.148	8.332	5	36.400	5.273	61	5	HOGA1	intronic	NA
RCC_T6--GL	chr10:99358824	A	NA	51	0	51	65.431	8.931	0	0	0	51	0	HOGA1	intronic	NA
RCC_T6--1	chr11:100126461	C	T	192	0.135	166	67.247	5.456	26	65.000	8.462	166	26	CNTN5	intronic	NA
RCC_T6--2	chr11:100126461	C	T	179	0.084	164	67.963	4.595	15	65.467	4.734	164	15	CNTN5	intronic	NA
RCC_T6--3	chr11:100126461	C	T	152	0.158	127	66.457	6.019	24	66.917	3.670	127	24	CNTN5	intronic	NA
RCC_T6--4	chr11:100126461	C	T	154	0.052	145	66.117	6.527	8	66.250	5.007	145	8	CNTN5	intronic	NA
RCC_T6--5	chr11:100126461	C	T	190	0.084	174	66.707	5.981	16	65.500	5.391	174	16	CNTN5	intronic	NA
RCC_T6--6	chr11:100126461	C	T	143	0.238	108	67.120	5.993	34	66.471	3.768	108	34	CNTN5	intronic	NA
RCC_T6--7	chr11:100126461	C	T	164	0.061	154	66.838	5.797	10	66.500	3.136	154	10	CNTN5	intronic	NA
RCC_T6--8	chr11:100126461	C	T	198	0.131	172	66.988	6.373	26	66.462	5.694	172	26	CNTN5	intronic	NA
RCC_T6--GL	chr11:100126461	C	NA	176	0	176	66.131	7.105	0	0	0	176	0	CNTN5	intronic	NA
RCC_T6--1	chr1:116225218	A	NA	30	0	29	60.897	5.833	0	0	0	29	0	VANGL1	intronic	NA
RCC_T6--2	chr1:116225218	A	NA	36	0	36	62.333	7.582	0	0	0	36	0	VANGL1	intronic	NA
RCC_T6--3	chr1:116225218	A	NA	33	0	32	60.000	8.788	0	0	0	32	0	VANGL1	intronic	NA
RCC_T6--4	chr1:116225218	A	C	24	0.167	20	63.300	6.514	4	40.750	4.193	20	4	VANGL1	intronic	NA
RCC_T6--5	chr1:116225218	A	NA	17	0	17	63.000	5.646	0	0	0	17	0	VANGL1	intronic	NA
RCC_T6--6	chr1:116225218	A	NA	31	0	31	56.290	8.556	0	0	0	31	0	VANGL1	intronic	NA
RCC_T6--7	chr1:116225218	A	NA	21	0	21	58.143	10.258	0	0	0	21	0	VANGL1	intronic	NA
RCC_T6--8	chr1:116225218	A	NA	32	0	32	61.875	6.969	0	0	0	32	0	VANGL1	intronic	NA
RCC_T6--GL	chr1:116225218	A	NA	43	0	42	59.310	7.770	0	0	0	42	0	VANGL1	intronic	NA
RCC_T6--1	chr11:18637703	C	G	54	0.019	53	68.189	6.436	1	40.000	0.000	53	1	SPTY2D1	intronic	NA
RCC_T6--2	chr11:18637703	C	NA	43	0	43	67.884	7.401	0	0	0	43	0	SPTY2D1	intronic	NA
RCC_T6--3	chr11:18637703	C	G	37	0.027	36	67.556	5.823	1	72.000	0.000	36	1	SPTY2D1	intronic	NA
RCC_T6--4	chr11:18637703	C	G	45	0.089	41	68.976	3.054	4	69.250	2.363	41	4	SPTY2D1	intronic	NA
RCC_T6--5	chr11:18637703	C	NA	49	0	49	66.388	6.855	0	0	0	49	0	SPTY2D1	intronic	NA
RCC_T6--6	chr11:18637703	C	NA	36	0	36	67.806	4.132	0	0	0	36	0	SPTY2D1	intronic	NA
RCC_T6--7	chr11:18637703	C	NA	43	0	43	67.814	6.025	0	0	0	43	0	SPTY2D1	intronic	NA
RCC_T6--8	chr11:18637703	C	G	33	0.242	25	67.120	2.906	8	66.125	13.442	25	8	SPTY2D1	intronic	NA
RCC_T6--GL	chr11:18637703	C	NA	35	0	35	67.629	4.941	0	0	0	35	0	SPTY2D1	intronic	NA
RCC_T6--1	chr1:144867734	G	NA	33	0	33	68.424	3.345	0	0	0	33	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--2	chr1:144867734	G	NA	38	0	38	68.842	2.746	0	0	0	38	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--3	chr1:144867734	G	NA	22	0	22	68.727	3.312	0	0	0	22	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--4	chr1:144867734	G	NA	26	0	26	66.885	6.358	0	0	0	26	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--5	chr1:144867734	G	NA	40	0	40	69.000	3.389	0	0	0	40	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--6	chr1:144867734	G	NA	27	0	27	67.111	7.592	0	0	0	27	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--7	chr1:144867734	G	T	33	0.121	29	65.724	5.909	4	64.750	8.461	29	4	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--8	chr1:144867734	G	NA	27	0	27	67.074	7.184	0	0	0	27	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--GL	chr1:144867734	G	NA	33	0	33	66.303	5.474	0	0	0	33	0	NBPF20,NBPF9,PDE4DIP	intronic	NA
RCC_T6--1	chr1:147096724	C	NA	32	0	32	64.938	8.466	0	0	0	32	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--2	chr1:147096724	C	A	30	0.133	26	67.154	4.505	4	65.750	0.500	26	4	BCL9	exonic	nonsynonymous_SNV
RCC_T6--3	chr1:147096724	C	NA	28	0	28	64.821	7.019	0	0	0	28	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--4	chr1:147096724	C	NA	40	0	40	65.475	7.071	0	0	0	40	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--5	chr1:147096724	C	NA	30	0	30	67.400	5.170	0	0	0	30	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--6	chr1:147096724	C	NA	43	0	43	65.698	8.459	0	0	0	43	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--7	chr1:147096724	C	NA	39	0	39	67.026	5.008	0	0	0	39	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--8	chr1:147096724	C	NA	32	0	32	64.562	7.479	0	0	0	32	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--GL	chr1:147096724	C	NA	37	0	37	64.703	8.550	0	0	0	37	0	BCL9	exonic	nonsynonymous_SNV
RCC_T6--1	chr11:64527042	A	G	25	0.160	20	65.450	4.058	4	57.000	16.432	20	4	PYGM	intronic	NA
RCC_T6--2	chr11:64527042	A	NA	43	0	43	62.535	9.437	0	0	0	43	0	PYGM	intronic	NA
RCC_T6--3	chr11:64527042	A	NA	52	0	51	64.902	7.046	0	0	0	51	0	PYGM	intronic	NA
RCC_T6--4	chr11:64527042	A	NA	46	0	46	63.435	9.140	0	0	0	46	0	PYGM	intronic	NA
RCC_T6--5	chr11:64527042	A	NA	44	0	43	63.860	8.448	0	0	0	43	0	PYGM	intronic	NA
RCC_T6--6	chr11:64527042	A	NA	45	0	45	65.022	6.777	0	0	0	45	0	PYGM	intronic	NA
RCC_T6--7	chr11:64527042	A	NA	29	0	29	65.586	6.214	0	0	0	29	0	PYGM	intronic	NA
RCC_T6--8	chr11:64527042	A	NA	27	0	26	63.308	10.687	0	0	0	26	0	PYGM	intronic	NA
RCC_T6--GL	chr11:64527042	A	NA	37	0	37	64.000	7.906	0	0	0	37	0	PYGM	intronic	NA
RCC_T6--1	chr1:167095004	C	NA	29	0	29	68.103	3.639	0	0	0	29	0	DUSP27	intronic	NA
RCC_T6--2	chr1:167095004	C	A	33	0.121	29	68.379	3.353	4	64.250	8.382	29	4	DUSP27	intronic	NA
RCC_T6--3	chr1:167095004	C	NA	37	0	37	67.838	3.362	0	0	0	37	0	DUSP27	intronic	NA
RCC_T6--4	chr1:167095004	C	NA	38	0	38	66.684	3.905	0	0	0	38	0	DUSP27	intronic	NA
RCC_T6--5	chr1:167095004	C	NA	38	0	38	67.368	4.733	0	0	0	38	0	DUSP27	intronic	NA
RCC_T6--6	chr1:167095004	C	NA	34	0	34	66.971	4.739	0	0	0	34	0	DUSP27	intronic	NA
RCC_T6--7	chr1:167095004	C	NA	40	0	40	66.700	7.028	0	0	0	40	0	DUSP27	intronic	NA
RCC_T6--8	chr1:167095004	C	NA	32	0	32	69.031	3.659	0	0	0	32	0	DUSP27	intronic	NA
RCC_T6--GL	chr1:167095004	C	NA	34	0	34	65.471	9.649	0	0	0	34	0	DUSP27	intronic	NA
RCC_T6--1	chr11:67765161	G	NA	43	0	43	64.558	8.296	0	0	0	43	0	UNC93B1	exonic	unknown
RCC_T6--2	chr11:67765161	G	A	44	0.182	36	66.417	8.115	8	56.375	14.501	36	8	UNC93B1	exonic	unknown
RCC_T6--3	chr11:67765161	G	A	55	0.036	53	64.094	8.356	2	59.000	4.243	53	2	UNC93B1	exonic	unknown
RCC_T6--4	chr11:67765161	G	A	69	0.043	66	65.439	5.993	3	63.333	2.887	66	3	UNC93B1	exonic	unknown
RCC_T6--5	chr11:67765161	G	A	57	0.018	56	66.214	4.339	1	66.000	0.000	56	1	UNC93B1	exonic	unknown
RCC_T6--6	chr11:67765161	G	A	62	0.032	60	63.200	8.356	2	49.000	22.627	60	2	UNC93B1	exonic	unknown
RCC_T6--7	chr11:67765161	G	NA	77	0	77	65.766	5.973	0	0	0	77	0	UNC93B1	exonic	unknown
RCC_T6--8	chr11:67765161	G	A	53	0.038	51	64.529	9.328	2	59.500	4.950	51	2	UNC93B1	exonic	unknown
RCC_T6--GL	chr11:67765161	G	NA	51	0	51	63.549	7.752	0	0	0	51	0	UNC93B1	exonic	unknown
RCC_T6--1	chr11:67765163	A	NA	43	0	43	62.977	8.623	0	0	0	43	0	UNC93B1	exonic	unknown
RCC_T6--2	chr11:67765163	A	G	44	0.205	35	66.886	4.987	9	55.667	13.266	35	9	UNC93B1	exonic	unknown
RCC_T6--3	chr11:67765163	A	G	53	0.038	51	64.235	7.981	2	63.000	1.414	51	2	UNC93B1	exonic	unknown
RCC_T6--4	chr11:67765163	A	G	69	0.058	65	66.185	4.115	4	60.500	4.509	65	4	UNC93B1	exonic	unknown
RCC_T6--5	chr11:67765163	A	NA	57	0	56	65.393	6.059	0	0	0	56	0	UNC93B1	exonic	unknown
RCC_T6--6	chr11:67765163	A	G	62	0.048	59	64.085	6.342	3	46.333	18.930	59	3	UNC93B1	exonic	unknown
RCC_T6--7	chr11:67765163	A	G	78	0.026	76	65.211	6.696	2	45.500	17.678	76	2	UNC93B1	exonic	unknown
RCC_T6--8	chr11:67765163	A	G	53	0.075	49	65.408	7.713	4	59.750	3.948	49	4	UNC93B1	exonic	unknown
RCC_T6--GL	chr11:67765163	A	NA	51	0	51	63.647	8.701	0	0	0	51	0	UNC93B1	exonic	unknown
RCC_T6--1	chr1:172417620	G	C	185	0.119	163	68.061	6.201	22	69.000	3.071	163	22	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--2	chr1:172417620	G	C	188	0.122	165	68.339	6.316	23	69.565	4.980	165	23	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--3	chr1:172417620	G	C	165	0.188	134	68.022	5.343	31	69.194	3.114	134	31	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--4	chr1:172417620	G	C	177	0.068	165	68.036	5.883	12	70.417	1.832	165	12	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--5	chr1:172417620	G	C	223	0.103	200	68.175	4.756	23	69.739	2.200	200	23	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--6	chr1:172417620	G	C	148	0.182	121	67.091	5.941	27	67.556	4.013	121	27	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--7	chr1:172417620	G	C	182	0.082	167	68.784	5.219	15	71.067	1.944	167	15	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--8	chr1:172417620	G	C	209	0.196	168	68.548	4.508	41	69.976	2.525	168	41	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--GL	chr1:172417620	G	NA	167	0	167	67.778	5.689	0	0	0	167	0	C1orf105	exonic	nonsynonymous_SNV
RCC_T6--1	chr1:172425417	C	NA	21	0	21	67.333	9.588	0	0	0	21	0	C1orf105	intronic	NA
RCC_T6--2	chr1:172425417	C	A	16	0.188	13	66.615	4.822	3	59.333	10.970	13	3	C1orf105	intronic	NA
RCC_T6--3	chr1:172425417	C	NA	14	0	14	68.857	4.990	0	0	0	14	0	C1orf105	intronic	NA
RCC_T6--4	chr1:172425417	C	NA	27	0	27	68.296	3.172	0	0	0	27	0	C1orf105	intronic	NA
RCC_T6--5	chr1:172425417	C	NA	19	0	19	66.789	6.828	0	0	0	19	0	C1orf105	intronic	NA
RCC_T6--6	chr1:172425417	C	NA	24	0	24	67.083	6.283	0	0	0	24	0	C1orf105	intronic	NA
RCC_T6--7	chr1:172425417	C	NA	22	0	22	68.136	6.999	0	0	0	22	0	C1orf105	intronic	NA
RCC_T6--8	chr1:172425417	C	NA	20	0	20	66.950	6.278	0	0	0	20	0	C1orf105	intronic	NA
RCC_T6--GL	chr1:172425417	C	NA	37	0	37	66.622	6.478	0	0	0	37	0	C1orf105	intronic	NA
RCC_T6--1	chr11:75001080	C	NA	46	0	46	65.109	3.990	0	0	0	46	0	ARRB1	exonic	synonymous_SNV
RCC_T6--2	chr11:75001080	C	NA	43	0	43	64.977	5.978	0	0	0	43	0	ARRB1	exonic	synonymous_SNV
RCC_T6--3	chr11:75001080	C	NA	40	0	40	64.250	6.751	0	0	0	40	0	ARRB1	exonic	synonymous_SNV
RCC_T6--4	chr11:75001080	C	NA	42	0	42	64.476	5.593	0	0	0	42	0	ARRB1	exonic	synonymous_SNV
RCC_T6--5	chr11:75001080	C	A	31	0.129	27	63.556	7.536	4	64.750	1.258	27	4	ARRB1	exonic	synonymous_SNV
RCC_T6--6	chr11:75001080	C	NA	55	0	55	63.909	7.173	0	0	0	55	0	ARRB1	exonic	synonymous_SNV
RCC_T6--7	chr11:75001080	C	NA	49	0	49	64.980	7.395	0	0	0	49	0	ARRB1	exonic	synonymous_SNV
RCC_T6--8	chr11:75001080	C	NA	54	0	54	63.315	7.169	0	0	0	54	0	ARRB1	exonic	synonymous_SNV
RCC_T6--GL	chr11:75001080	C	NA	42	0	42	64.786	4.951	0	0	0	42	0	ARRB1	exonic	synonymous_SNV
RCC_T6--1	chr1:175325572	C	T	80	0.113	71	68.197	4.807	9	67.667	4.770	71	9	TNR	exonic	nonsynonymous_SNV
RCC_T6--2	chr1:175325572	C	T	107	0.131	93	68.204	5.664	14	67.643	3.342	93	14	TNR	exonic	nonsynonymous_SNV
RCC_T6--3	chr1:175325572	C	T	80	0.188	65	67.862	3.720	15	66.333	3.754	65	15	TNR	exonic	nonsynonymous_SNV
RCC_T6--4	chr1:175325572	C	NA	95	0	95	66.474	7.847	0	0	0	95	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--5	chr1:175325572	C	NA	87	0	85	67.859	4.167	0	0	0	85	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--6	chr1:175325572	C	NA	95	0	95	66.063	8.168	0	0	0	95	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--7	chr1:175325572	C	NA	72	0	72	68.681	5.326	0	0	0	72	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--8	chr1:175325572	C	NA	106	0	106	68.330	4.210	0	0	0	106	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--GL	chr1:175325572	C	NA	87	0	87	67.586	5.434	0	0	0	87	0	TNR	exonic	nonsynonymous_SNV
RCC_T6--1	chr1:17666150	C	NA	40	0	40	65.800	8.106	0	0	0	40	0	PADI4	intronic	NA
RCC_T6--2	chr1:17666150	C	NA	59	0	59	65.390	6.878	0	0	0	59	0	PADI4	intronic	NA
RCC_T6--3	chr1:17666150	C	NA	38	0	38	63.447	6.198	0	0	0	38	0	PADI4	intronic	NA
RCC_T6--4	chr1:17666150	C	NA	45	0	45	64.467	7.156	0	0	0	45	0	PADI4	intronic	NA
RCC_T6--5	chr1:17666150	C	NA	55	0	55	65.545	6.540	0	0	0	55	0	PADI4	intronic	NA
RCC_T6--6	chr1:17666150	C	A	37	0.027	36	64.194	7.018	1	33.000	0.000	36	1	PADI4	intronic	NA
RCC_T6--7	chr1:17666150	C	NA	41	0	41	66.024	6.941	0	0	0	41	0	PADI4	intronic	NA
RCC_T6--8	chr1:17666150	C	A	28	0.143	24	64.958	7.910	4	67.500	4.435	24	4	PADI4	intronic	NA
RCC_T6--GL	chr1:17666150	C	NA	56	0	56	65.696	7.019	0	0	0	56	0	PADI4	intronic	NA
RCC_T6--1	chr1:185113218	G	T	60	0.017	31	68.613	3.774	1	62.000	0.000	31	1	TRMT1L	intronic	NA
RCC_T6--2	chr1:185113218	G	NA	51	0	25	70.120	2.728	0	0	0	25	0	TRMT1L	intronic	NA
RCC_T6--3	chr1:185113218	G	T	55	0.036	23	69.043	3.747	2	62.500	7.778	23	2	TRMT1L	intronic	NA
RCC_T6--4	chr1:185113218	G	T	44	0.023	25	68.480	4.951	1	66.000	0.000	25	1	TRMT1L	intronic	NA
RCC_T6--5	chr1:185113218	G	T	81	0.012	44	69.523	3.099	1	62.000	0.000	44	1	TRMT1L	intronic	NA
RCC_T6--6	chr1:185113218	G	T	56	0.036	27	68.296	5.150	2	65.500	0.707	27	2	TRMT1L	intronic	NA
RCC_T6--7	chr1:185113218	G	T	56	0.125	24	69.333	2.914	7	62.857	5.429	24	7	TRMT1L	intronic	NA
RCC_T6--8	chr1:185113218	G	NA	86	0	41	69.098	3.484	0	0	0	41	0	TRMT1L	intronic	NA
RCC_T6--GL	chr1:185113218	G	NA	65	0	45	68.267	4.361	0	0	0	45	0	TRMT1L	intronic	NA
RCC_T6--1	chr1:186122039	T	A	126	0.175	104	69.875	2.679	22	69.682	5.075	104	22	MIR548F1	ncRNA_intronic	NA
RCC_T6--2	chr1:186122039	T	A	165	0.091	150	69.320	4.417	15	69.133	4.688	150	15	MIR548F1	ncRNA_intronic	NA
RCC_T6--3	chr1:186122039	T	A	134	0.254	100	68.050	5.407	34	69.441	3.145	100	34	MIR548F1	ncRNA_intronic	NA
RCC_T6--4	chr1:186122039	T	A	117	0.060	110	68.682	3.930	7	71.000	2.236	110	7	MIR548F1	ncRNA_intronic	NA
RCC_T6--5	chr1:186122039	T	A	127	0.071	118	68.856	5.235	9	71.111	1.167	118	9	MIR548F1	ncRNA_intronic	NA
RCC_T6--6	chr1:186122039	T	A	139	0.309	96	68.969	3.259	43	67.093	5.520	96	43	MIR548F1	ncRNA_intronic	NA
RCC_T6--7	chr1:186122039	T	A	120	0.050	114	69.518	2.903	6	70.167	3.545	114	6	MIR548F1	ncRNA_intronic	NA
RCC_T6--8	chr1:186122039	T	A	139	0.266	102	68.343	5.257	37	69.216	3.146	102	37	MIR548F1	ncRNA_intronic	NA
RCC_T6--GL	chr1:186122039	T	NA	127	0	127	68.094	7.159	0	0	0	127	0	MIR548F1	ncRNA_intronic	NA
RCC_T6--1	chr1:208383571	C	NA	26	0	26	68.962	3.143	0	0	0	26	0	PLXNA2	intronic	NA
RCC_T6--2	chr1:208383571	C	A	32	0.125	28	69.357	2.805	4	65.250	10.996	28	4	PLXNA2	intronic	NA
RCC_T6--3	chr1:208383571	C	NA	29	0	29	67.621	4.829	0	0	0	29	0	PLXNA2	intronic	NA
RCC_T6--4	chr1:208383571	C	NA	37	0	37	68.568	3.492	0	0	0	37	0	PLXNA2	intronic	NA
RCC_T6--5	chr1:208383571	C	NA	25	0	25	69.320	3.388	0	0	0	25	0	PLXNA2	intronic	NA
RCC_T6--6	chr1:208383571	C	NA	17	0	17	65.412	8.486	0	0	0	17	0	PLXNA2	intronic	NA
RCC_T6--7	chr1:208383571	C	NA	26	0	26	68.885	2.833	0	0	0	26	0	PLXNA2	intronic	NA
RCC_T6--8	chr1:208383571	C	NA	29	0	29	68.828	2.765	0	0	0	29	0	PLXNA2	intronic	NA
RCC_T6--GL	chr1:208383571	C	NA	33	0	33	68.182	3.933	0	0	0	33	0	PLXNA2	intronic	NA
RCC_T6--1	chr12:11081976	G	T	66	0.015	65	66.877	8.226	1	40.000	0.000	65	1	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--2	chr12:11081976	G	NA	61	0	61	68.262	3.669	0	0	0	61	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--3	chr12:11081976	G	NA	47	0	47	66.787	5.996	0	0	0	47	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--4	chr12:11081976	G	NA	48	0	48	67.708	4.252	0	0	0	48	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--5	chr12:11081976	G	NA	62	0	62	67.161	6.698	0	0	0	62	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--6	chr12:11081976	G	T	48	0.271	35	67.429	6.199	13	66.692	3.987	35	13	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--7	chr12:11081976	G	NA	73	0	73	66.055	9.177	0	0	0	73	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--8	chr12:11081976	G	T	69	0.029	67	65.896	6.469	2	67.000	2.828	67	2	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--GL	chr12:11081976	G	NA	52	0	52	68.346	5.523	0	0	0	52	0	PRH1-PRR4	ncRNA_intronic	NA
RCC_T6--1	chr12:110930893	C	NA	116	0	116	68.000	6.415	0	0	0	116	0	VPS29	exonic	synonymous_SNV
RCC_T6--2	chr12:110930893	C	NA	66	0	66	67.970	5.820	0	0	0	66	0	VPS29	exonic	synonymous_SNV
RCC_T6--3	chr12:110930893	C	G	73	0.027	71	63.606	10.844	2	68.500	3.536	71	2	VPS29	exonic	synonymous_SNV
RCC_T6--4	chr12:110930893	C	G	102	0.039	98	66.153	7.335	4	70.250	2.217	98	4	VPS29	exonic	synonymous_SNV
RCC_T6--5	chr12:110930893	C	NA	74	0	74	66.797	7.465	0	0	0	74	0	VPS29	exonic	synonymous_SNV
RCC_T6--6	chr12:110930893	C	NA	77	0	77	67.364	4.075	0	0	0	77	0	VPS29	exonic	synonymous_SNV
RCC_T6--7	chr12:110930893	C	NA	86	0	86	67.233	5.960	0	0	0	86	0	VPS29	exonic	synonymous_SNV
RCC_T6--8	chr12:110930893	C	G	65	0.138	56	65.929	9.919	9	69.778	3.768	56	9	VPS29	exonic	synonymous_SNV
RCC_T6--GL	chr12:110930893	C	NA	79	0	79	68.608	3.726	0	0	0	79	0	VPS29	exonic	synonymous_SNV
RCC_T6--1	chr12:118604580	C	NA	53	0	53	69.151	3.779	0	0	0	53	0	TAOK3	intronic	NA
RCC_T6--2	chr12:118604580	C	NA	56	0	56	66.714	9.077	0	0	0	56	0	TAOK3	intronic	NA
RCC_T6--3	chr12:118604580	C	NA	40	0	40	67.275	5.679	0	0	0	40	0	TAOK3	intronic	NA
RCC_T6--4	chr12:118604580	C	NA	59	0	59	66.203	7.545	0	0	0	59	0	TAOK3	intronic	NA
RCC_T6--5	chr12:118604580	C	NA	42	0	42	65.429	8.964	0	0	0	42	0	TAOK3	intronic	NA
RCC_T6--6	chr12:118604580	C	NA	26	0	26	65.038	9.946	0	0	0	26	0	TAOK3	intronic	NA
RCC_T6--7	chr12:118604580	C	NA	47	0	47	67.511	7.165	0	0	0	47	0	TAOK3	intronic	NA
RCC_T6--8	chr12:118604580	C	A	43	0.140	37	66.405	8.786	6	69.000	1.095	37	6	TAOK3	intronic	NA
RCC_T6--GL	chr12:118604580	C	NA	50	0	50	64.900	9.673	0	0	0	50	0	TAOK3	intronic	NA
RCC_T6--1	chr12:121461709	C	NA	41	0	41	67.000	5.060	0	0	0	41	0	OASL	intronic	NA
RCC_T6--2	chr12:121461709	C	NA	50	0	50	68.100	5.912	0	0	0	50	0	OASL	intronic	NA
RCC_T6--3	chr12:121461709	C	NA	28	0	28	66.607	4.685	0	0	0	28	0	OASL	intronic	NA
RCC_T6--4	chr12:121461709	C	NA	38	0	37	68.189	3.008	0	0	0	37	0	OASL	intronic	NA
RCC_T6--5	chr12:121461709	C	NA	38	0	38	67.658	6.767	0	0	0	38	0	OASL	intronic	NA
RCC_T6--6	chr12:121461709	C	NA	25	0	25	64.600	8.689	0	0	0	25	0	OASL	intronic	NA
RCC_T6--7	chr12:121461709	C	NA	42	0	42	67.452	6.649	0	0	0	42	0	OASL	intronic	NA
RCC_T6--8	chr12:121461709	C	A	32	0.125	28	67.571	3.563	4	69.250	2.630	28	4	OASL	intronic	NA
RCC_T6--GL	chr12:121461709	C	NA	48	0	48	67.625	4.195	0	0	0	48	0	OASL	intronic	NA
RCC_T6--1	chr12:123649946	A	T	154	0.188	125	67.232	4.945	29	68.276	6.491	125	29	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--2	chr12:123649946	A	T	170	0.153	144	67.701	4.397	26	65.885	7.196	144	26	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--3	chr12:123649946	A	T	134	0.187	108	66.065	6.651	25	67.200	4.839	108	25	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--4	chr12:123649946	A	NA	182	0	182	67.731	3.625	0	0	0	182	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--5	chr12:123649946	A	NA	166	0	166	66.843	5.916	0	0	0	166	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--6	chr12:123649946	A	NA	104	0	104	64.990	8.291	0	0	0	104	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--7	chr12:123649946	A	NA	177	0	177	66.983	6.873	0	0	0	177	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--8	chr12:123649946	A	NA	170	0	169	66.763	5.660	0	0	0	169	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--GL	chr12:123649946	A	NA	185	0	185	65.541	7.274	0	0	0	185	0	MPHOSPH9	exonic	synonymous_SNV
RCC_T6--1	chr12:125450408	A	NA	18	0	18	65.444	4.314	0	0	0	18	0	DHX37	intronic	NA
RCC_T6--2	chr12:125450408	A	G	20	0.200	16	64.688	7.880	4	64.250	2.872	16	4	DHX37	intronic	NA
RCC_T6--3	chr12:125450408	A	NA	24	0	24	65.000	4.709	0	0	0	24	0	DHX37	intronic	NA
RCC_T6--4	chr12:125450408	A	NA	25	0	25	65.080	8.005	0	0	0	25	0	DHX37	intronic	NA
RCC_T6--5	chr12:125450408	A	NA	28	0	28	65.429	7.431	0	0	0	28	0	DHX37	intronic	NA
RCC_T6--6	chr12:125450408	A	NA	24	0	24	64.708	7.937	0	0	0	24	0	DHX37	intronic	NA
RCC_T6--7	chr12:125450408	A	NA	40	0	40	67.200	3.220	0	0	0	40	0	DHX37	intronic	NA
RCC_T6--8	chr12:125450408	A	NA	34	0	34	64.676	4.558	0	0	0	34	0	DHX37	intronic	NA
RCC_T6--GL	chr12:125450408	A	NA	43	0	43	63.791	7.183	0	0	0	43	0	DHX37	intronic	NA
RCC_T6--1	chr12:133758663	C	NA	47	0	47	65.936	5.326	0	0	0	47	0	ZNF268	intronic	NA
RCC_T6--2	chr12:133758663	C	NA	29	0	29	66.207	6.904	0	0	0	29	0	ZNF268	intronic	NA
RCC_T6--3	chr12:133758663	C	NA	27	0	27	67.222	3.423	0	0	0	27	0	ZNF268	intronic	NA
RCC_T6--4	chr12:133758663	C	NA	43	0	43	66.558	5.216	0	0	0	43	0	ZNF268	intronic	NA
RCC_T6--5	chr12:133758663	C	NA	43	0	43	65.884	6.602	0	0	0	43	0	ZNF268	intronic	NA
RCC_T6--6	chr12:133758663	C	NA	18	0	18	64.389	9.847	0	0	0	18	0	ZNF268	intronic	NA
RCC_T6--7	chr12:133758663	C	NA	49	0	49	65.265	8.855	0	0	0	49	0	ZNF268	intronic	NA
RCC_T6--8	chr12:133758663	C	A	26	0.154	22	66.136	4.632	4	64.500	3.000	22	4	ZNF268	intronic	NA
RCC_T6--GL	chr12:133758663	C	NA	48	0	48	66.792	3.876	0	0	0	48	0	ZNF268	intronic	NA
RCC_T6--1	chr12:14664116	C	NA	49	0	49	67.571	3.974	0	0	0	49	0	PLBD1	intronic	NA
RCC_T6--2	chr12:14664116	C	NA	42	0	42	64.524	10.426	0	0	0	42	0	PLBD1	intronic	NA
RCC_T6--3	chr12:14664116	C	A	19	0.158	16	67.875	3.423	3	53.667	17.926	16	3	PLBD1	intronic	NA
RCC_T6--4	chr12:14664116	C	NA	39	0	39	65.154	7.656	0	0	0	39	0	PLBD1	intronic	NA
RCC_T6--5	chr12:14664116	C	NA	55	0	55	65.309	7.471	0	0	0	55	0	PLBD1	intronic	NA
RCC_T6--6	chr12:14664116	C	NA	36	0	36	66.167	7.478	0	0	0	36	0	PLBD1	intronic	NA
RCC_T6--7	chr12:14664116	C	NA	37	0	37	65.838	6.474	0	0	0	37	0	PLBD1	intronic	NA
RCC_T6--8	chr12:14664116	C	NA	45	0	45	66.956	4.552	0	0	0	45	0	PLBD1	intronic	NA
RCC_T6--GL	chr12:14664116	C	NA	45	0	45	65.822	7.126	0	0	0	45	0	PLBD1	intronic	NA
RCC_T6--1	chr12:27109572	G	T	195	0.113	173	67.231	6.148	22	68.636	2.498	173	22	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--2	chr12:27109572	G	T	163	0.135	141	68.652	5.287	22	68.455	5.553	141	22	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--3	chr12:27109572	G	T	151	0.166	126	67.349	5.193	25	66.720	5.184	126	25	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--4	chr12:27109572	G	T	149	0.087	136	68.140	4.370	13	66.615	8.402	136	13	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--5	chr12:27109572	G	T	189	0.101	170	67.988	4.171	19	66.789	7.375	170	19	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--6	chr12:27109572	G	T	159	0.201	127	66.724	6.384	32	66.031	7.785	127	32	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--7	chr12:27109572	G	T	155	0.052	147	67.694	4.991	8	69.125	2.475	147	8	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--8	chr12:27109572	G	T	180	0.194	144	68.118	4.555	35	67.829	2.813	144	35	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--GL	chr12:27109572	G	NA	150	0	149	68.530	4.549	0	0	0	149	0	FGFR1OP2	exonic	stopgain_SNV
RCC_T6--1	chr1:227222515	G	A	129	0.062	121	67.942	4.944	8	67.250	3.576	121	8	CDC42BPA	intronic	NA
RCC_T6--2	chr1:227222515	G	A	99	0.152	84	68.381	5.197	15	67.200	4.678	84	15	CDC42BPA	intronic	NA
RCC_T6--3	chr1:227222515	G	A	126	0.024	123	67.602	5.240	3	65.667	5.132	123	3	CDC42BPA	intronic	NA
RCC_T6--4	chr1:227222515	G	A	116	0.034	112	67.473	5.712	4	67.750	0.500	112	4	CDC42BPA	intronic	NA
RCC_T6--5	chr1:227222515	G	A	102	0.039	98	68.051	4.180	4	66.250	3.500	98	4	CDC42BPA	intronic	NA
RCC_T6--6	chr1:227222515	G	A	110	0.055	104	66.856	7.433	6	66.333	4.227	104	6	CDC42BPA	intronic	NA
RCC_T6--7	chr1:227222515	G	A	123	0.024	120	68.042	3.720	3	65.667	4.509	120	3	CDC42BPA	intronic	NA
RCC_T6--8	chr1:227222515	G	A	130	0.046	124	68.298	4.279	6	67.167	4.021	124	6	CDC42BPA	intronic	NA
RCC_T6--GL	chr1:227222515	G	NA	102	0	100	67.370	5.344	0	0	0	100	0	CDC42BPA	intronic	NA
RCC_T6--1	chr1:228479690	C	G	110	0.200	88	63.534	10.217	22	62.409	10.459	88	22	OBSCN	exonic	synonymous_SNV
RCC_T6--2	chr1:228479690	C	G	132	0.106	118	65.508	7.522	14	68.286	4.531	118	14	OBSCN	exonic	synonymous_SNV
RCC_T6--3	chr1:228479690	C	G	106	0.170	87	62.747	10.173	18	64.722	9.578	87	18	OBSCN	exonic	synonymous_SNV
RCC_T6--4	chr1:228479690	C	G	129	0.054	122	64.992	7.331	7	65.714	4.271	122	7	OBSCN	exonic	synonymous_SNV
RCC_T6--5	chr1:228479690	C	G	142	0.070	131	66.153	6.714	10	66.400	4.222	131	10	OBSCN	exonic	synonymous_SNV
RCC_T6--6	chr1:228479690	C	G	126	0.317	86	64.779	7.768	40	65.725	6.026	86	40	OBSCN	exonic	synonymous_SNV
RCC_T6--7	chr1:228479690	C	G	130	0.023	127	64.787	8.037	3	66.000	4.359	127	3	OBSCN	exonic	synonymous_SNV
RCC_T6--8	chr1:228479690	C	G	143	0.168	119	65.403	7.067	24	65.458	8.016	119	24	OBSCN	exonic	synonymous_SNV
RCC_T6--GL	chr1:228479690	C	NA	93	0	93	65.161	8.192	0	0	0	93	0	OBSCN	exonic	synonymous_SNV
RCC_T6--1	chr12:51751263	C	NA	27	0	27	65.370	7.967	0	0	0	27	0	GALNT6	intronic	NA
RCC_T6--2	chr12:51751263	C	A	25	0.160	21	65.286	8.379	4	64.000	4.899	21	4	GALNT6	intronic	NA
RCC_T6--3	chr12:51751263	C	NA	31	0	30	65.200	8.864	0	0	0	30	0	GALNT6	intronic	NA
RCC_T6--4	chr12:51751263	C	NA	28	0	28	67.357	4.390	0	0	0	28	0	GALNT6	intronic	NA
RCC_T6--5	chr12:51751263	C	NA	37	0	37	64.622	9.050	0	0	0	37	0	GALNT6	intronic	NA
RCC_T6--6	chr12:51751263	C	NA	21	0	21	64.476	8.959	0	0	0	21	0	GALNT6	intronic	NA
RCC_T6--7	chr12:51751263	C	NA	30	0	30	66.733	6.893	0	0	0	30	0	GALNT6	intronic	NA
RCC_T6--8	chr12:51751263	C	NA	41	0	40	65.925	6.825	0	0	0	40	0	GALNT6	intronic	NA
RCC_T6--GL	chr12:51751263	C	NA	34	0	34	65.529	8.411	0	0	0	34	0	GALNT6	intronic	NA
RCC_T6--1	chr12:53461901	C	NA	46	0	46	65.696	6.538	0	0	0	46	0	SPRYD3	intronic	NA
RCC_T6--2	chr12:53461901	C	NA	59	0	59	67.203	3.916	0	0	0	59	0	SPRYD3	intronic	NA
RCC_T6--3	chr12:53461901	C	NA	42	0	42	63.881	8.642	0	0	0	42	0	SPRYD3	intronic	NA
RCC_T6--4	chr12:53461901	C	NA	40	0	40	66.450	5.018	0	0	0	40	0	SPRYD3	intronic	NA
RCC_T6--5	chr12:53461901	C	NA	49	0	49	66.204	5.842	0	0	0	49	0	SPRYD3	intronic	NA
RCC_T6--6	chr12:53461901	C	NA	47	0	47	63.404	8.907	0	0	0	47	0	SPRYD3	intronic	NA
RCC_T6--7	chr12:53461901	C	NA	38	0	38	67.132	3.655	0	0	0	38	0	SPRYD3	intronic	NA
RCC_T6--8	chr12:53461901	C	A	34	0.118	30	67.533	3.421	4	64.500	6.758	30	4	SPRYD3	intronic	NA
RCC_T6--GL	chr12:53461901	C	NA	45	0	45	65.933	6.676	0	0	0	45	0	SPRYD3	intronic	NA
RCC_T6--1	chr12:57571324	C	NA	35	0	35	65.457	7.257	0	0	0	35	0	LRP1	exonic	synonymous_SNV
RCC_T6--2	chr12:57571324	C	NA	51	0	51	66.078	6.387	0	0	0	51	0	LRP1	exonic	synonymous_SNV
RCC_T6--3	chr12:57571324	C	NA	38	0	38	65.921	4.999	0	0	0	38	0	LRP1	exonic	synonymous_SNV
RCC_T6--4	chr12:57571324	C	NA	29	0	29	61.655	11.159	0	0	0	29	0	LRP1	exonic	synonymous_SNV
RCC_T6--5	chr12:57571324	C	T	32	0.125	28	65.750	9.721	4	61.750	11.529	28	4	LRP1	exonic	synonymous_SNV
RCC_T6--6	chr12:57571324	C	NA	37	0	37	65.081	7.312	0	0	0	37	0	LRP1	exonic	synonymous_SNV
RCC_T6--7	chr12:57571324	C	NA	22	0	22	64.818	8.584	0	0	0	22	0	LRP1	exonic	synonymous_SNV
RCC_T6--8	chr12:57571324	C	NA	31	0	31	67.452	4.632	0	0	0	31	0	LRP1	exonic	synonymous_SNV
RCC_T6--GL	chr12:57571324	C	NA	34	0	34	66.147	3.862	0	0	0	34	0	LRP1	exonic	synonymous_SNV
RCC_T6--1	chr12:57648851	G	NA	91	0	91	66.165	6.815	0	0	0	91	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--2	chr12:57648851	G	NA	56	0	56	67.161	3.437	0	0	0	56	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--3	chr12:57648851	G	T	79	0.025	77	63.299	9.115	2	63.000	2.828	77	2	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--4	chr12:57648851	G	T	99	0.051	94	65.596	6.282	5	58.800	15.057	94	5	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--5	chr12:57648851	G	NA	73	0	73	64.260	8.216	0	0	0	73	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--6	chr12:57648851	G	NA	90	0	90	65.811	5.734	0	0	0	90	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--7	chr12:57648851	G	NA	101	0	101	65.931	6.292	0	0	0	101	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--8	chr12:57648851	G	T	79	0.139	68	65.794	6.431	11	65.364	3.982	68	11	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr12:57648851	G	NA	52	0	52	65.442	6.073	0	0	0	52	0	R3HDM2	exonic	nonsynonymous_SNV
RCC_T6--1	chr12:6677069	C	NA	50	0	50	67.040	6.224	0	0	0	50	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--2	chr12:6677069	C	A	69	0.116	61	65.131	7.835	8	65.375	3.701	61	8	NOP2	exonic	nonsynonymous_SNV
RCC_T6--3	chr12:6677069	C	A	62	0.145	53	63.623	8.813	9	61.000	6.185	53	9	NOP2	exonic	nonsynonymous_SNV
RCC_T6--4	chr12:6677069	C	NA	106	0	106	64.717	8.543	0	0	0	106	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--5	chr12:6677069	C	NA	83	0	82	64.976	7.546	0	0	0	82	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--6	chr12:6677069	C	NA	77	0	77	63.545	7.738	0	0	0	77	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--7	chr12:6677069	C	NA	116	0	116	64.448	8.084	0	0	0	116	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--8	chr12:6677069	C	NA	65	0	65	65.292	6.207	0	0	0	65	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr12:6677069	C	NA	64	0	64	64.844	8.454	0	0	0	64	0	NOP2	exonic	nonsynonymous_SNV
RCC_T6--1	chr12:6923885	G	T	46	0.130	40	63.150	10.981	6	64.167	3.430	40	6	CD4	intronic	NA
RCC_T6--2	chr12:6923885	G	T	33	0.152	28	67.429	4.307	5	64.600	1.673	28	5	CD4	intronic	NA
RCC_T6--3	chr12:6923885	G	T	52	0.096	47	66.638	4.910	5	60.000	6.083	47	5	CD4	intronic	NA
RCC_T6--4	chr12:6923885	G	T	46	0.065	43	67.093	4.325	3	57.667	17.039	43	3	CD4	intronic	NA
RCC_T6--5	chr12:6923885	G	T	50	0.120	44	65.023	8.182	6	58.833	9.283	44	6	CD4	intronic	NA
RCC_T6--6	chr12:6923885	G	T	41	0.293	29	67.724	4.114	12	57.833	9.703	29	12	CD4	intronic	NA
RCC_T6--7	chr12:6923885	G	T	37	0.027	36	67.389	4.052	1	61.000	0.000	36	1	CD4	intronic	NA
RCC_T6--8	chr12:6923885	G	T	38	0.184	31	65.323	8.619	7	62.571	3.505	31	7	CD4	intronic	NA
RCC_T6--GL	chr12:6923885	G	NA	43	0	43	65.070	7.608	0	0	0	43	0	CD4	intronic	NA
RCC_T6--1	chr12:7019246	T	NA	43	0	43	67.884	3.171	0	0	0	43	0	LRRC23	intronic	NA
RCC_T6--2	chr12:7019246	T	NA	54	0	54	65.222	9.749	0	0	0	54	0	LRRC23	intronic	NA
RCC_T6--3	chr12:7019246	T	NA	34	0	34	67.706	3.030	0	0	0	34	0	LRRC23	intronic	NA
RCC_T6--4	chr12:7019246	T	NA	46	0	46	67.761	2.968	0	0	0	46	0	LRRC23	intronic	NA
RCC_T6--5	chr12:7019246	T	NA	34	0	34	67.088	7.677	0	0	0	34	0	LRRC23	intronic	NA
RCC_T6--6	chr12:7019246	T	NA	47	0	47	66.660	4.002	0	0	0	47	0	LRRC23	intronic	NA
RCC_T6--7	chr12:7019246	T	C	32	0.125	28	66.821	6.383	4	66.500	2.517	28	4	LRRC23	intronic	NA
RCC_T6--8	chr12:7019246	T	NA	48	0	48	67.000	5.423	0	0	0	48	0	LRRC23	intronic	NA
RCC_T6--GL	chr12:7019246	T	NA	50	0	50	66.120	9.055	0	0	0	50	0	LRRC23	intronic	NA
RCC_T6--1	chr12:7301771	A	C	29	0.138	25	68.720	3.482	4	69.000	2.449	25	4	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--2	chr12:7301771	A	NA	37	0	37	68.973	3.563	0	0	0	37	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--3	chr12:7301771	A	NA	32	0	32	65.906	7.826	0	0	0	32	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--4	chr12:7301771	A	NA	29	0	29	67.448	5.255	0	0	0	29	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--5	chr12:7301771	A	NA	39	0	39	68.000	3.756	0	0	0	39	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--6	chr12:7301771	A	NA	28	0	28	66.714	5.394	0	0	0	28	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--7	chr12:7301771	A	NA	40	0	40	67.400	4.573	0	0	0	40	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--8	chr12:7301771	A	NA	27	0	27	66.889	5.064	0	0	0	27	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--GL	chr12:7301771	A	NA	34	0	33	66.061	8.351	0	0	0	33	0	CLSTN3	exonic	nonsynonymous_SNV
RCC_T6--1	chr12:7362862	C	NA	23	0	23	65.913	4.728	0	0	0	23	0	PEX5	UTR3	NA
RCC_T6--2	chr12:7362862	C	NA	20	0	20	63.150	8.450	0	0	0	20	0	PEX5	UTR3	NA
RCC_T6--3	chr12:7362862	C	A	32	0.031	31	62.839	11.193	1	33.000	0.000	31	1	PEX5	UTR3	NA
RCC_T6--4	chr12:7362862	C	NA	29	0	29	64.414	10.140	0	0	0	29	0	PEX5	UTR3	NA
RCC_T6--5	chr12:7362862	C	NA	23	0	23	65.913	7.135	0	0	0	23	0	PEX5	UTR3	NA
RCC_T6--6	chr12:7362862	C	NA	25	0	25	63.560	8.099	0	0	0	25	0	PEX5	UTR3	NA
RCC_T6--7	chr12:7362862	C	NA	20	0	20	62.900	10.513	0	0	0	20	0	PEX5	UTR3	NA
RCC_T6--8	chr12:7362862	C	A	32	0.125	28	64.857	8.729	4	47.500	10.847	28	4	PEX5	UTR3	NA
RCC_T6--GL	chr12:7362862	C	NA	33	0	33	65.576	7.366	0	0	0	33	0	PEX5	UTR3	NA
RCC_T6--1	chr13:32981862	T	NA	144	0	144	66.583	6.599	0	0	0	144	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--2	chr13:32981862	T	NA	200	0	200	67.240	6.710	0	0	0	200	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--3	chr13:32981862	T	NA	167	0	167	66.617	5.892	0	0	0	167	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--4	chr13:32981862	T	NA	198	0	196	64.556	8.428	0	0	0	196	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--5	chr13:32981862	T	NA	164	0	164	66.146	6.946	0	0	0	164	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--6	chr13:32981862	T	A	166	0.253	124	65.726	6.322	42	65.667	7.528	124	42	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--7	chr13:32981862	T	NA	223	0	223	66.587	5.656	0	0	0	223	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--8	chr13:32981862	T	A	218	0.032	210	65.933	6.285	7	67.143	2.610	210	7	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr13:32981862	T	NA	171	0	170	64.776	8.173	0	0	0	170	0	N4BP2L1	exonic	nonsynonymous_SNV
RCC_T6--1	chr13:39585301	T	C	24	0.042	23	68.826	3.973	1	65.000	0.000	23	1	PROSER1	UTR3	NA
RCC_T6--2	chr13:39585301	T	C	35	0.086	32	69.594	2.710	3	63.000	1.732	32	3	PROSER1	UTR3	NA
RCC_T6--3	chr13:39585301	T	NA	31	0	31	67.387	5.064	0	0	0	31	0	PROSER1	UTR3	NA
RCC_T6--4	chr13:39585301	T	C	19	0.211	15	65.267	8.598	4	64.750	2.872	15	4	PROSER1	UTR3	NA
RCC_T6--5	chr13:39585301	T	NA	36	0	36	68.361	4.492	0	0	0	36	0	PROSER1	UTR3	NA
RCC_T6--6	chr13:39585301	T	NA	24	0	24	69.167	3.319	0	0	0	24	0	PROSER1	UTR3	NA
RCC_T6--7	chr13:39585301	T	NA	30	0	30	68.367	4.359	0	0	0	30	0	PROSER1	UTR3	NA
RCC_T6--8	chr13:39585301	T	C	26	0.231	20	69.700	2.227	6	65.167	0.408	20	6	PROSER1	UTR3	NA
RCC_T6--GL	chr13:39585301	T	NA	33	0	33	67.939	5.567	0	0	0	33	0	PROSER1	UTR3	NA
RCC_T6--1	chr13:44543585	C	NA	30	0	30	64.833	9.418	0	0	0	30	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--2	chr13:44543585	C	A	36	0.111	32	65.500	6.159	4	62.250	8.770	32	4	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--3	chr13:44543585	C	NA	40	0	40	65.625	4.845	0	0	0	40	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--4	chr13:44543585	C	NA	49	0	49	65.735	3.883	0	0	0	49	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--5	chr13:44543585	C	NA	25	0	25	66.640	3.522	0	0	0	25	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--6	chr13:44543585	C	NA	35	0	35	64.743	8.272	0	0	0	35	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--7	chr13:44543585	C	NA	45	0	45	64.022	7.442	0	0	0	45	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--8	chr13:44543585	C	NA	37	0	37	64.432	8.681	0	0	0	37	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--GL	chr13:44543585	C	NA	33	0	33	64.364	6.712	0	0	0	33	0	LACC1(dist=75517),LINC00284(dist=52886)	intergenic	NA
RCC_T6--1	chr13:50466487	T	NA	134	0	134	66.806	6.984	0	0	0	134	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--2	chr13:50466487	T	NA	145	0	145	67.545	4.492	0	0	0	145	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--3	chr13:50466487	T	C	95	0.011	94	67.809	3.867	1	70.000	0.000	94	1	CTAGE10P	ncRNA_exonic	NA
RCC_T6--4	chr13:50466487	T	C	111	0.090	101	66.901	5.423	10	66.600	11.909	101	10	CTAGE10P	ncRNA_exonic	NA
RCC_T6--5	chr13:50466487	T	NA	162	0	162	67.025	5.306	0	0	0	162	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--6	chr13:50466487	T	NA	111	0	111	65.955	5.761	0	0	0	111	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--7	chr13:50466487	T	NA	138	0	138	66.899	5.101	0	0	0	138	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--8	chr13:50466487	T	C	133	0.301	93	67.398	4.910	40	65.250	9.489	93	40	CTAGE10P	ncRNA_exonic	NA
RCC_T6--GL	chr13:50466487	T	NA	131	0	131	64.412	8.291	0	0	0	131	0	CTAGE10P	ncRNA_exonic	NA
RCC_T6--1	chr14:105178897	G	A	29	0.138	25	66.240	6.815	4	62.500	2.887	25	4	INF2	intronic	NA
RCC_T6--2	chr14:105178897	G	NA	26	0	26	66.654	3.452	0	0	0	26	0	INF2	intronic	NA
RCC_T6--3	chr14:105178897	G	NA	32	0	32	64.125	8.628	0	0	0	32	0	INF2	intronic	NA
RCC_T6--4	chr14:105178897	G	NA	37	0	37	65.703	5.364	0	0	0	37	0	INF2	intronic	NA
RCC_T6--5	chr14:105178897	G	NA	42	0	42	66.381	3.951	0	0	0	42	0	INF2	intronic	NA
RCC_T6--6	chr14:105178897	G	NA	33	0	33	61.667	8.655	0	0	0	33	0	INF2	intronic	NA
RCC_T6--7	chr14:105178897	G	NA	34	0	34	65.765	3.669	0	0	0	34	0	INF2	intronic	NA
RCC_T6--8	chr14:105178897	G	NA	32	0	32	65.094	7.739	0	0	0	32	0	INF2	intronic	NA
RCC_T6--GL	chr14:105178897	G	NA	33	0	33	66.636	3.863	0	0	0	33	0	INF2	intronic	NA
RCC_T6--1	chr14:21490143	C	NA	34	0	34	66.118	6.732	0	0	0	34	0	NDRG2	intronic	NA
RCC_T6--2	chr14:21490143	C	A	34	0.147	29	67.138	3.739	5	54.600	11.082	29	5	NDRG2	intronic	NA
RCC_T6--3	chr14:21490143	C	NA	37	0	37	66.243	7.617	0	0	0	37	0	NDRG2	intronic	NA
RCC_T6--4	chr14:21490143	C	NA	22	0	22	68.136	4.268	0	0	0	22	0	NDRG2	intronic	NA
RCC_T6--5	chr14:21490143	C	NA	31	0	31	67.419	4.357	0	0	0	31	0	NDRG2	intronic	NA
RCC_T6--6	chr14:21490143	C	NA	37	0	37	66.189	6.911	0	0	0	37	0	NDRG2	intronic	NA
RCC_T6--7	chr14:21490143	C	NA	28	0	28	66.036	6.397	0	0	0	28	0	NDRG2	intronic	NA
RCC_T6--8	chr14:21490143	C	NA	34	0	34	67.794	4.270	0	0	0	34	0	NDRG2	intronic	NA
RCC_T6--GL	chr14:21490143	C	NA	46	0	46	66.370	7.816	0	0	0	46	0	NDRG2	intronic	NA
RCC_T6--1	chr14:23373310	C	NA	24	0	24	68.000	6.150	0	0	0	24	0	RBM23	intronic	NA
RCC_T6--2	chr14:23373310	C	NA	35	0	34	68.471	6.859	0	0	0	34	0	RBM23	intronic	NA
RCC_T6--3	chr14:23373310	C	NA	30	0	30	64.300	11.271	0	0	0	30	0	RBM23	intronic	NA
RCC_T6--4	chr14:23373310	C	NA	35	0	35	66.286	6.501	0	0	0	35	0	RBM23	intronic	NA
RCC_T6--5	chr14:23373310	C	A	43	0.116	38	65.816	6.551	5	64.600	13.297	38	5	RBM23	intronic	NA
RCC_T6--6	chr14:23373310	C	NA	32	0	32	65.875	6.772	0	0	0	32	0	RBM23	intronic	NA
RCC_T6--7	chr14:23373310	C	NA	51	0	51	66.922	7.520	0	0	0	51	0	RBM23	intronic	NA
RCC_T6--8	chr14:23373310	C	NA	42	0	42	67.357	4.595	0	0	0	42	0	RBM23	intronic	NA
RCC_T6--GL	chr14:23373310	C	NA	50	0	50	67.000	5.237	0	0	0	50	0	RBM23	intronic	NA
RCC_T6--1	chr14:23886898	G	A	36	0.111	32	67.469	6.956	4	61.250	3.304	32	4	MYH7	intronic	NA
RCC_T6--2	chr14:23886898	G	NA	46	0	46	67.652	4.767	0	0	0	46	0	MYH7	intronic	NA
RCC_T6--3	chr14:23886898	G	NA	31	0	30	65.633	7.444	0	0	0	30	0	MYH7	intronic	NA
RCC_T6--4	chr14:23886898	G	NA	49	0	49	66.837	6.193	0	0	0	49	0	MYH7	intronic	NA
RCC_T6--5	chr14:23886898	G	NA	49	0	49	66.898	6.469	0	0	0	49	0	MYH7	intronic	NA
RCC_T6--6	chr14:23886898	G	NA	30	0	30	67.233	3.549	0	0	0	30	0	MYH7	intronic	NA
RCC_T6--7	chr14:23886898	G	NA	49	0	49	66.102	8.483	0	0	0	49	0	MYH7	intronic	NA
RCC_T6--8	chr14:23886898	G	NA	39	0	39	67.590	4.800	0	0	0	39	0	MYH7	intronic	NA
RCC_T6--GL	chr14:23886898	G	NA	46	0	46	65.000	8.086	0	0	0	46	0	MYH7	intronic	NA
RCC_T6--1	chr14:23894889	G	NA	91	0	91	67.516	6.181	0	0	0	91	0	MYH7	intronic	NA
RCC_T6--2	chr14:23894889	G	NA	97	0	97	68.041	4.926	0	0	0	97	0	MYH7	intronic	NA
RCC_T6--3	chr14:23894889	G	NA	72	0	72	66.528	7.815	0	0	0	72	0	MYH7	intronic	NA
RCC_T6--4	chr14:23894889	G	NA	88	0	88	67.807	4.152	0	0	0	88	0	MYH7	intronic	NA
RCC_T6--5	chr14:23894889	G	NA	69	0	69	68.957	3.890	0	0	0	69	0	MYH7	intronic	NA
RCC_T6--6	chr14:23894889	G	C	76	0.276	55	68.891	3.489	21	66.476	4.226	55	21	MYH7	intronic	NA
RCC_T6--7	chr14:23894889	G	NA	109	0	109	68.028	5.365	0	0	0	109	0	MYH7	intronic	NA
RCC_T6--8	chr14:23894889	G	C	64	0.047	61	67.787	7.142	3	70.000	0.000	61	3	MYH7	intronic	NA
RCC_T6--GL	chr14:23894889	G	NA	67	0	67	67.657	5.095	0	0	0	67	0	MYH7	intronic	NA
RCC_T6--1	chr14:35579889	A	G	33	0.394	20	65.550	8.494	13	70.308	2.250	20	13	LOC101927178	ncRNA_intronic	NA
RCC_T6--2	chr14:35579889	A	G	37	0.135	32	68.469	4.600	5	67.800	2.387	32	5	LOC101927178	ncRNA_intronic	NA
RCC_T6--3	chr14:35579889	A	G	30	0.100	27	69.037	2.682	3	64.000	4.000	27	3	LOC101927178	ncRNA_intronic	NA
RCC_T6--4	chr14:35579889	A	G	34	0.118	30	68.733	3.859	4	67.750	2.986	30	4	LOC101927178	ncRNA_intronic	NA
RCC_T6--5	chr14:35579889	A	G	49	0.163	41	68.585	4.183	8	65.500	13.256	41	8	LOC101927178	ncRNA_intronic	NA
RCC_T6--6	chr14:35579889	A	G	39	0.205	31	66.194	7.208	8	67.125	4.673	31	8	LOC101927178	ncRNA_intronic	NA
RCC_T6--7	chr14:35579889	A	G	27	0.037	26	68.077	4.698	1	70.000	0.000	26	1	LOC101927178	ncRNA_intronic	NA
RCC_T6--8	chr14:35579889	A	G	40	0.175	33	68.909	2.972	7	67.429	4.077	33	7	LOC101927178	ncRNA_intronic	NA
RCC_T6--GL	chr14:35579889	A	NA	44	0	44	67.682	4.258	0	0	0	44	0	LOC101927178	ncRNA_intronic	NA
RCC_T6--1	chr1:44569638	C	T	56	0.107	50	66.260	5.893	6	63.667	5.750	50	6	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--2	chr1:44569638	C	NA	64	0	64	66.531	6.389	0	0	0	64	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--3	chr1:44569638	C	NA	36	0	36	65.639	6.424	0	0	0	36	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--4	chr1:44569638	C	NA	53	0	52	64.404	8.098	0	0	0	52	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--5	chr1:44569638	C	NA	69	0	69	64.899	7.254	0	0	0	69	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--6	chr1:44569638	C	NA	46	0	45	67.111	3.543	0	0	0	45	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--7	chr1:44569638	C	NA	69	0	69	65.884	6.982	0	0	0	69	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--8	chr1:44569638	C	NA	54	0	54	63.222	9.642	0	0	0	54	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--GL	chr1:44569638	C	NA	51	0	51	65.255	7.851	0	0	0	51	0	SLC6A9(dist=72474),KLF17(dist=14884)	intergenic	NA
RCC_T6--1	chr14:52187088	A	G	36	0.083	33	67.030	6.738	3	39.667	11.547	33	3	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--2	chr14:52187088	A	G	33	0.061	31	66.968	6.780	2	35.500	3.536	31	2	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--3	chr14:52187088	A	G	34	0.029	33	66.667	6.498	1	33.000	0.000	33	1	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--4	chr14:52187088	A	G	37	0.054	35	68.429	3.128	2	33.000	0.000	35	2	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--5	chr14:52187088	A	G	35	0.029	34	67.529	6.964	1	33.000	0.000	34	1	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--6	chr14:52187088	A	G	31	0.226	24	65.125	11.238	7	33.000	0.000	24	7	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--7	chr14:52187088	A	G	41	0.073	38	67.105	8.040	3	33.000	0.000	38	3	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--8	chr14:52187088	A	NA	41	0	41	66.195	9.928	0	0	0	41	0	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--GL	chr14:52187088	A	NA	35	0	35	68.514	3.921	0	0	0	35	0	FRMD6	exonic	nonsynonymous_SNV
RCC_T6--1	chr1:45973163	C	NA	39	0	39	65.692	7.413	0	0	0	39	0	MMACHC	exonic	synonymous_SNV
RCC_T6--2	chr1:45973163	C	NA	25	0	25	64.320	11.532	0	0	0	25	0	MMACHC	exonic	synonymous_SNV
RCC_T6--3	chr1:45973163	C	NA	38	0	38	66.632	6.655	0	0	0	38	0	MMACHC	exonic	synonymous_SNV
RCC_T6--4	chr1:45973163	C	NA	46	0	46	66.478	6.791	0	0	0	46	0	MMACHC	exonic	synonymous_SNV
RCC_T6--5	chr1:45973163	C	NA	26	0	26	67.192	4.271	0	0	0	26	0	MMACHC	exonic	synonymous_SNV
RCC_T6--6	chr1:45973163	C	NA	41	0	41	66.707	3.983	0	0	0	41	0	MMACHC	exonic	synonymous_SNV
RCC_T6--7	chr1:45973163	C	NA	51	0	51	66.431	6.297	0	0	0	51	0	MMACHC	exonic	synonymous_SNV
RCC_T6--8	chr1:45973163	C	A	35	0.114	31	67.645	3.220	4	66.000	1.414	31	4	MMACHC	exonic	synonymous_SNV
RCC_T6--GL	chr1:45973163	C	NA	44	0	44	68.000	6.379	0	0	0	44	0	MMACHC	exonic	synonymous_SNV
RCC_T6--1	chr14:65253752	C	A	32	0.125	28	65.964	8.505	4	65.250	2.363	28	4	SPTB	exonic	synonymous_SNV
RCC_T6--2	chr14:65253752	C	NA	21	0	21	67.762	2.508	0	0	0	21	0	SPTB	exonic	synonymous_SNV
RCC_T6--3	chr14:65253752	C	NA	22	0	22	66.864	4.039	0	0	0	22	0	SPTB	exonic	synonymous_SNV
RCC_T6--4	chr14:65253752	C	NA	38	0	38	64.105	9.135	0	0	0	38	0	SPTB	exonic	synonymous_SNV
RCC_T6--5	chr14:65253752	C	NA	48	0	48	64.333	8.611	0	0	0	48	0	SPTB	exonic	synonymous_SNV
RCC_T6--6	chr14:65253752	C	NA	22	0	22	65.000	4.588	0	0	0	22	0	SPTB	exonic	synonymous_SNV
RCC_T6--7	chr14:65253752	C	NA	38	0	38	65.711	6.629	0	0	0	38	0	SPTB	exonic	synonymous_SNV
RCC_T6--8	chr14:65253752	C	NA	30	0	30	63.133	9.435	0	0	0	30	0	SPTB	exonic	synonymous_SNV
RCC_T6--GL	chr14:65253752	C	NA	35	0	35	63.200	10.070	0	0	0	35	0	SPTB	exonic	synonymous_SNV
RCC_T6--1	chr1:47075279	C	NA	19	0	19	67.579	4.221	0	0	0	19	0	MOB3C	UTR3	NA
RCC_T6--2	chr1:47075279	C	NA	22	0	20	67.900	2.100	0	0	0	20	0	MOB3C	UTR3	NA
RCC_T6--3	chr1:47075279	C	NA	39	0	39	66.821	6.472	0	0	0	39	0	MOB3C	UTR3	NA
RCC_T6--4	chr1:47075279	C	NA	34	0	33	64.030	6.696	0	0	0	33	0	MOB3C	UTR3	NA
RCC_T6--5	chr1:47075279	C	NA	27	0	27	65.778	10.267	0	0	0	27	0	MOB3C	UTR3	NA
RCC_T6--6	chr1:47075279	C	NA	33	0	33	65.212	6.855	0	0	0	33	0	MOB3C	UTR3	NA
RCC_T6--7	chr1:47075279	C	NA	39	0	39	66.000	8.291	0	0	0	39	0	MOB3C	UTR3	NA
RCC_T6--8	chr1:47075279	C	T	31	0.129	27	67.444	4.371	4	67.000	1.155	27	4	MOB3C	UTR3	NA
RCC_T6--GL	chr1:47075279	C	NA	33	0	33	67.424	3.307	0	0	0	33	0	MOB3C	UTR3	NA
RCC_T6--1	chr14:73957868	G	NA	18	0	18	67.056	3.718	0	0	0	18	0	C14orf169	exonic	unknown
RCC_T6--2	chr14:73957868	G	NA	23	0	23	66.913	4.611	0	0	0	23	0	C14orf169	exonic	unknown
RCC_T6--3	chr14:73957868	G	NA	22	0	22	66.364	8.015	0	0	0	22	0	C14orf169	exonic	unknown
RCC_T6--4	chr14:73957868	G	NA	35	0	35	66.971	3.073	0	0	0	35	0	C14orf169	exonic	unknown
RCC_T6--5	chr14:73957868	G	A	31	0.129	27	63.963	9.994	4	67.750	4.646	27	4	C14orf169	exonic	unknown
RCC_T6--6	chr14:73957868	G	NA	12	0	12	64.167	10.920	0	0	0	12	0	C14orf169	exonic	unknown
RCC_T6--7	chr14:73957868	G	NA	35	0	35	64.971	8.347	0	0	0	35	0	C14orf169	exonic	unknown
RCC_T6--8	chr14:73957868	G	NA	12	0	12	68.083	3.029	0	0	0	12	0	C14orf169	exonic	unknown
RCC_T6--GL	chr14:73957868	G	NA	35	0	35	65.686	5.465	0	0	0	35	0	C14orf169	exonic	unknown
RCC_T6--1	chr14:75137460	C	NA	34	0	34	68.588	3.295	0	0	0	34	0	AREL1	intronic	NA
RCC_T6--2	chr14:75137460	C	A	42	0.024	41	68.927	3.510	1	72.000	0.000	41	1	AREL1	intronic	NA
RCC_T6--3	chr14:75137460	C	NA	30	0	30	66.833	4.194	0	0	0	30	0	AREL1	intronic	NA
RCC_T6--4	chr14:75137460	C	A	45	0.022	44	66.523	6.638	1	71.000	0.000	44	1	AREL1	intronic	NA
RCC_T6--5	chr14:75137460	C	A	50	0.080	46	68.870	3.902	4	68.000	2.708	46	4	AREL1	intronic	NA
RCC_T6--6	chr14:75137460	C	NA	15	0	15	68.333	3.559	0	0	0	15	0	AREL1	intronic	NA
RCC_T6--7	chr14:75137460	C	A	42	0.024	41	69.146	3.525	1	69.000	0.000	41	1	AREL1	intronic	NA
RCC_T6--8	chr14:75137460	C	A	44	0.205	35	66.429	4.767	9	66.333	4.637	35	9	AREL1	intronic	NA
RCC_T6--GL	chr14:75137460	C	NA	33	0	33	66.576	7.492	0	0	0	33	0	AREL1	intronic	NA
RCC_T6--1	chr14:78149634	G	NA	35	0	35	69.057	3.514	0	0	0	35	0	ALKBH1	intronic	NA
RCC_T6--2	chr14:78149634	G	NA	39	0	39	67.872	5.084	0	0	0	39	0	ALKBH1	intronic	NA
RCC_T6--3	chr14:78149634	G	NA	37	0	37	67.297	9.012	0	0	0	37	0	ALKBH1	intronic	NA
RCC_T6--4	chr14:78149634	G	NA	39	0	39	66.231	5.551	0	0	0	39	0	ALKBH1	intronic	NA
RCC_T6--5	chr14:78149634	G	A	37	0.108	33	66.879	5.005	4	66.250	0.500	33	4	ALKBH1	intronic	NA
RCC_T6--6	chr14:78149634	G	NA	31	0	31	65.484	7.979	0	0	0	31	0	ALKBH1	intronic	NA
RCC_T6--7	chr14:78149634	G	NA	45	0	45	66.467	4.132	0	0	0	45	0	ALKBH1	intronic	NA
RCC_T6--8	chr14:78149634	G	NA	61	0	60	66.250	5.715	0	0	0	60	0	ALKBH1	intronic	NA
RCC_T6--GL	chr14:78149634	G	NA	36	0	36	66.417	7.264	0	0	0	36	0	ALKBH1	intronic	NA
RCC_T6--1	chr15:30298081	C	NA	35	0	35	68.657	6.864	0	0	0	35	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--2	chr15:30298081	C	NA	24	0	24	69.000	2.766	0	0	0	24	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--3	chr15:30298081	C	NA	17	0	17	67.765	3.977	0	0	0	17	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--4	chr15:30298081	C	NA	32	0	32	67.438	3.918	0	0	0	32	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--5	chr15:30298081	C	NA	28	0	28	68.143	4.179	0	0	0	28	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--6	chr15:30298081	C	NA	26	0	26	67.269	4.670	0	0	0	26	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--7	chr15:30298081	C	A	27	0.148	23	67.565	3.174	4	68.750	3.775	23	4	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--8	chr15:30298081	C	NA	46	0	46	67.370	7.110	0	0	0	46	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--GL	chr15:30298081	C	NA	43	0	43	68.093	4.174	0	0	0	43	0	TJP1(dist=183375),GOLGA8J(dist=77077)	intergenic	NA
RCC_T6--1	chr1:53364874	C	T	34	0.118	30	64.567	9.500	4	66.250	4.500	30	4	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--2	chr1:53364874	C	NA	56	0	55	66.400	6.063	0	0	0	55	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--3	chr1:53364874	C	NA	49	0	49	65.449	5.672	0	0	0	49	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--4	chr1:53364874	C	NA	40	0	40	66.175	6.012	0	0	0	40	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--5	chr1:53364874	C	NA	57	0	57	65.000	7.569	0	0	0	57	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--6	chr1:53364874	C	T	38	0.053	36	64.722	8.276	2	65.500	0.707	36	2	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--7	chr1:53364874	C	T	86	0.012	85	66.212	5.665	1	68.000	0.000	85	1	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--8	chr1:53364874	C	NA	56	0	56	64.232	9.842	0	0	0	56	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr1:53364874	C	NA	38	0	38	64.211	8.600	0	0	0	38	0	ECHDC2	exonic	nonsynonymous_SNV
RCC_T6--1	chr15:35182299	G	NA	33	0	33	69.091	3.035	0	0	0	33	0	AQR	intronic	NA
RCC_T6--2	chr15:35182299	G	NA	33	0	33	68.182	3.575	0	0	0	33	0	AQR	intronic	NA
RCC_T6--3	chr15:35182299	G	NA	31	0	31	67.065	6.319	0	0	0	31	0	AQR	intronic	NA
RCC_T6--4	chr15:35182299	G	NA	33	0	33	67.303	6.780	0	0	0	33	0	AQR	intronic	NA
RCC_T6--5	chr15:35182299	G	NA	38	0	38	68.132	4.610	0	0	0	38	0	AQR	intronic	NA
RCC_T6--6	chr15:35182299	G	A	36	0.194	29	68.655	2.919	7	66.857	5.178	29	7	AQR	intronic	NA
RCC_T6--7	chr15:35182299	G	NA	30	0	30	68.767	4.523	0	0	0	30	0	AQR	intronic	NA
RCC_T6--8	chr15:35182299	G	A	43	0.047	41	69.000	3.225	2	55.500	21.920	41	2	AQR	intronic	NA
RCC_T6--GL	chr15:35182299	G	NA	44	0	44	67.886	3.545	0	0	0	44	0	AQR	intronic	NA
RCC_T6--1	chr15:43903239	A	T	29	0.069	25	64.920	9.018	2	63.000	2.828	25	2	STRC	intronic	NA
RCC_T6--2	chr15:43903239	A	T	40	0.125	34	64.088	7.601	5	65.800	2.168	34	5	STRC	intronic	NA
RCC_T6--3	chr15:43903239	A	T	26	0.154	22	61.955	9.747	4	54.000	14.652	22	4	STRC	intronic	NA
RCC_T6--4	chr15:43903239	A	T	28	0.107	25	61.600	8.327	3	60.333	10.786	25	3	STRC	intronic	NA
RCC_T6--5	chr15:43903239	A	T	42	0.071	38	65.000	6.690	3	66.000	1.732	38	3	STRC	intronic	NA
RCC_T6--6	chr15:43903239	A	T	28	0.036	27	63.556	9.366	1	66.000	0.000	27	1	STRC	intronic	NA
RCC_T6--7	chr15:43903239	A	T	34	0.176	28	62.250	5.726	6	53.333	15.782	28	6	STRC	intronic	NA
RCC_T6--8	chr15:43903239	A	T	42	0.190	31	63.290	9.940	8	59.250	11.793	31	8	STRC	intronic	NA
RCC_T6--GL	chr15:43903239	A	NA	38	0	36	66.167	4.971	0	0	0	36	0	STRC	intronic	NA
RCC_T6--1	chr15:44093954	C	G	120	0.100	108	65.083	8.161	12	67.667	3.229	108	12	HYPK	exonic	nonsynonymous_SNV
RCC_T6--2	chr15:44093954	C	G	123	0.033	119	66.521	4.902	4	66.750	7.089	119	4	HYPK	exonic	nonsynonymous_SNV
RCC_T6--3	chr15:44093954	C	G	87	0.138	75	65.440	8.024	12	63.500	5.402	75	12	HYPK	exonic	nonsynonymous_SNV
RCC_T6--4	chr15:44093954	C	G	149	0.060	138	66.029	5.296	9	65.889	5.555	138	9	HYPK	exonic	nonsynonymous_SNV
RCC_T6--5	chr15:44093954	C	G	125	0.088	113	66.681	6.023	11	67.364	3.075	113	11	HYPK	exonic	nonsynonymous_SNV
RCC_T6--6	chr15:44093954	C	G	79	0.278	57	66.333	6.151	22	66.273	6.888	57	22	HYPK	exonic	nonsynonymous_SNV
RCC_T6--7	chr15:44093954	C	G	105	0.029	102	66.422	6.566	3	70.667	1.528	102	3	HYPK	exonic	nonsynonymous_SNV
RCC_T6--8	chr15:44093954	C	G	114	0.272	83	64.831	7.293	31	68.129	3.509	83	31	HYPK	exonic	nonsynonymous_SNV
RCC_T6--GL	chr15:44093954	C	NA	98	0	98	66.306	6.246	0	0	0	98	0	HYPK	exonic	nonsynonymous_SNV
RCC_T6--1	chr1:54661352	A	G	26	0.077	24	65.083	8.075	2	65.500	0.707	24	2	CYB5RL	UTR5	NA
RCC_T6--2	chr1:54661352	A	G	26	0.115	23	66.870	5.972	3	66.333	3.786	23	3	CYB5RL	UTR5	NA
RCC_T6--3	chr1:54661352	A	G	34	0.118	30	65.500	8.042	4	68.250	3.775	30	4	CYB5RL	UTR5	NA
RCC_T6--4	chr1:54661352	A	NA	28	0	28	65.321	8.314	0	0	0	28	0	CYB5RL	UTR5	NA
RCC_T6--5	chr1:54661352	A	NA	29	0	29	66.138	7.100	0	0	0	29	0	CYB5RL	UTR5	NA
RCC_T6--6	chr1:54661352	A	G	28	0.321	19	66.632	3.148	9	68.444	4.126	19	9	CYB5RL	UTR5	NA
RCC_T6--7	chr1:54661352	A	NA	32	0	32	64.969	7.412	0	0	0	32	0	CYB5RL	UTR5	NA
RCC_T6--8	chr1:54661352	A	G	44	0.023	43	66.581	7.041	1	68.000	0.000	43	1	CYB5RL	UTR5	NA
RCC_T6--GL	chr1:54661352	A	NA	40	0	40	65.250	8.877	0	0	0	40	0	CYB5RL	UTR5	NA
RCC_T6--1	chr1:55598230	G	NA	337	0	337	68.543	4.740	0	0	0	337	0	USP24	exonic	synonymous_SNV
RCC_T6--2	chr1:55598230	G	A	381	0.097	344	68.683	3.781	37	68.270	5.184	344	37	USP24	exonic	synonymous_SNV
RCC_T6--3	chr1:55598230	G	A	337	0.148	287	66.537	7.175	50	67.500	5.384	287	50	USP24	exonic	synonymous_SNV
RCC_T6--4	chr1:55598230	G	A	313	0.003	312	67.503	5.306	1	57.000	0.000	312	1	USP24	exonic	synonymous_SNV
RCC_T6--5	chr1:55598230	G	NA	335	0	334	68.147	5.342	0	0	0	334	0	USP24	exonic	synonymous_SNV
RCC_T6--6	chr1:55598230	G	NA	343	0	343	67.376	5.630	0	0	0	343	0	USP24	exonic	synonymous_SNV
RCC_T6--7	chr1:55598230	G	NA	370	0	370	68.178	4.820	0	0	0	370	0	USP24	exonic	synonymous_SNV
RCC_T6--8	chr1:55598230	G	NA	405	0	405	68.059	5.242	0	0	0	405	0	USP24	exonic	synonymous_SNV
RCC_T6--GL	chr1:55598230	G	NA	303	0	302	67.811	5.780	0	0	0	302	0	USP24	exonic	synonymous_SNV
RCC_T6--1	chr15:78189761	T	G	36	0.056	34	61.265	11.134	2	38.000	7.071	34	2	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--2	chr15:78189761	T	G	41	0.098	37	60.405	9.691	4	34.000	2.000	37	4	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--3	chr15:78189761	T	G	40	0.100	34	55.971	12.897	4	34.500	3.000	34	4	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--4	chr15:78189761	T	G	38	0.184	31	56.097	13.578	7	35.000	2.646	31	7	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--5	chr15:78189761	T	G	39	0.051	37	56.757	12.814	2	39.000	8.485	37	2	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--6	chr15:78189761	T	G	34	0.147	29	59.241	11.948	5	38.600	9.529	29	5	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--7	chr15:78189761	T	G	37	0.108	33	61.848	10.530	4	36.000	2.449	33	4	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--8	chr15:78189761	T	G	33	0.121	29	62.517	9.089	4	36.500	7.000	29	4	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--GL	chr15:78189761	T	NA	37	0	35	57.086	14.567	0	0	0	35	0	RP11-307C19.3(dist=248180),LOC645752(dist=16798)	intergenic	NA
RCC_T6--1	chr15:85147579	C	NA	36	0	36	66.306	6.981	0	0	0	36	0	ZSCAN2	intronic	NA
RCC_T6--2	chr15:85147579	C	NA	27	0	27	67.556	5.740	0	0	0	27	0	ZSCAN2	intronic	NA
RCC_T6--3	chr15:85147579	C	NA	36	0	36	65.639	5.581	0	0	0	36	0	ZSCAN2	intronic	NA
RCC_T6--4	chr15:85147579	C	NA	43	0	43	67.488	3.588	0	0	0	43	0	ZSCAN2	intronic	NA
RCC_T6--5	chr15:85147579	C	A	32	0.125	28	67.571	4.122	4	56.250	15.777	28	4	ZSCAN2	intronic	NA
RCC_T6--6	chr15:85147579	C	NA	33	0	33	64.970	7.679	0	0	0	33	0	ZSCAN2	intronic	NA
RCC_T6--7	chr15:85147579	C	NA	53	0	52	66.750	5.770	0	0	0	52	0	ZSCAN2	intronic	NA
RCC_T6--8	chr15:85147579	C	NA	30	0	30	67.567	4.191	0	0	0	30	0	ZSCAN2	intronic	NA
RCC_T6--GL	chr15:85147579	C	NA	33	0	33	65.939	6.505	0	0	0	33	0	ZSCAN2	intronic	NA
RCC_T6--1	chr15:89805192	G	T	48	0.021	47	69.489	3.127	1	68.000	0.000	47	1	FANCI	intronic	NA
RCC_T6--2	chr15:89805192	G	T	48	0.062	45	68.733	5.136	3	65.000	3.000	45	3	FANCI	intronic	NA
RCC_T6--3	chr15:89805192	G	NA	32	0	32	68.250	3.132	0	0	0	32	0	FANCI	intronic	NA
RCC_T6--4	chr15:89805192	G	NA	31	0	31	68.355	3.738	0	0	0	31	0	FANCI	intronic	NA
RCC_T6--5	chr15:89805192	G	T	36	0.139	31	68.613	2.895	5	59.800	11.628	31	5	FANCI	intronic	NA
RCC_T6--6	chr15:89805192	G	T	40	0.050	38	67.789	6.842	2	60.000	2.828	38	2	FANCI	intronic	NA
RCC_T6--7	chr15:89805192	G	NA	22	0	22	67.409	6.573	0	0	0	22	0	FANCI	intronic	NA
RCC_T6--8	chr15:89805192	G	NA	32	0	32	66.562	7.483	0	0	0	32	0	FANCI	intronic	NA
RCC_T6--GL	chr15:89805192	G	NA	40	0	40	69.250	3.875	0	0	0	40	0	FANCI	intronic	NA
RCC_T6--1	chr16:18850864	C	NA	31	0	31	67.645	6.237	0	0	0	31	0	SMG1	intronic	NA
RCC_T6--2	chr16:18850864	C	NA	48	0	48	68.938	3.212	0	0	0	48	0	SMG1	intronic	NA
RCC_T6--3	chr16:18850864	C	NA	20	0	20	65.950	8.599	0	0	0	20	0	SMG1	intronic	NA
RCC_T6--4	chr16:18850864	C	NA	23	0	23	66.261	5.754	0	0	0	23	0	SMG1	intronic	NA
RCC_T6--5	chr16:18850864	C	NA	48	0	48	67.771	6.981	0	0	0	48	0	SMG1	intronic	NA
RCC_T6--6	chr16:18850864	C	NA	37	0	37	67.108	5.015	0	0	0	37	0	SMG1	intronic	NA
RCC_T6--7	chr16:18850864	C	T	24	0.167	20	68.500	3.887	4	68.000	1.633	20	4	SMG1	intronic	NA
RCC_T6--8	chr16:18850864	C	NA	48	0	47	66.872	8.438	0	0	0	47	0	SMG1	intronic	NA
RCC_T6--GL	chr16:18850864	C	NA	39	0	39	66.923	5.904	0	0	0	39	0	SMG1	intronic	NA
RCC_T6--1	chr16:19651391	G	NA	54	0	54	66.019	6.800	0	0	0	54	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--2	chr16:19651391	G	NA	71	0	71	67.507	4.368	0	0	0	71	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--3	chr16:19651391	G	A	63	0.079	58	66.293	6.044	5	57.200	15.139	58	5	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--4	chr16:19651391	G	A	62	0.032	60	66.550	5.516	2	68.000	2.828	60	2	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--5	chr16:19651391	G	NA	62	0	62	67.290	5.646	0	0	0	62	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--6	chr16:19651391	G	NA	80	0	80	65.100	6.558	0	0	0	80	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--7	chr16:19651391	G	NA	66	0	66	66.667	5.731	0	0	0	66	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--8	chr16:19651391	G	A	46	0.239	35	64.914	5.762	11	64.636	11.084	35	11	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--GL	chr16:19651391	G	NA	48	0	48	67.375	3.785	0	0	0	48	0	C16orf62	exonic	nonsynonymous_SNV
RCC_T6--1	chr16:21387964	C	NA	32	0	32	66.938	3.918	0	0	0	32	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--2	chr16:21387964	C	A	28	0.143	24	67.583	3.658	4	68.750	3.202	24	4	SNX29P1	ncRNA_intronic	NA
RCC_T6--3	chr16:21387964	C	NA	21	0	21	65.429	4.261	0	0	0	21	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--4	chr16:21387964	C	A	33	0.030	32	67.031	5.227	1	33.000	0.000	32	1	SNX29P1	ncRNA_intronic	NA
RCC_T6--5	chr16:21387964	C	NA	20	0	20	68.950	3.692	0	0	0	20	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--6	chr16:21387964	C	NA	22	0	22	66.455	5.910	0	0	0	22	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--7	chr16:21387964	C	NA	34	0	34	67.941	6.919	0	0	0	34	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--8	chr16:21387964	C	NA	24	0	24	65.417	8.444	0	0	0	24	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--GL	chr16:21387964	C	NA	33	0	33	66.091	4.383	0	0	0	33	0	SNX29P1	ncRNA_intronic	NA
RCC_T6--1	chr16:23767219	C	NA	21	0	21	61.762	11.794	0	0	0	21	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--2	chr16:23767219	C	NA	39	0	39	66.051	3.762	0	0	0	39	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--3	chr16:23767219	C	NA	39	0	39	64.385	8.290	0	0	0	39	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--4	chr16:23767219	C	A	43	0.023	42	62.167	8.892	1	33.000	0.000	42	1	CHP2	exonic	nonsynonymous_SNV
RCC_T6--5	chr16:23767219	C	NA	42	0	42	66.000	4.055	0	0	0	42	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--6	chr16:23767219	C	NA	38	0	38	64.868	6.423	0	0	0	38	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--7	chr16:23767219	C	NA	46	0	46	66.739	3.599	0	0	0	46	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--8	chr16:23767219	C	A	31	0.129	27	66.074	4.393	4	62.000	5.228	27	4	CHP2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr16:23767219	C	NA	35	0	35	65.229	7.777	0	0	0	35	0	CHP2	exonic	nonsynonymous_SNV
RCC_T6--1	chr16:27145977	G	NA	27	0	27	67.111	7.577	0	0	0	27	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--2	chr16:27145977	G	NA	46	0	46	67.609	3.612	0	0	0	46	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--3	chr16:27145977	G	NA	19	0	19	65.737	6.090	0	0	0	19	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--4	chr16:27145977	G	NA	30	0	30	64.500	6.986	0	0	0	30	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--5	chr16:27145977	G	NA	27	0	27	66.333	5.277	0	0	0	27	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--6	chr16:27145977	G	NA	37	0	37	63.514	9.335	0	0	0	37	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--7	chr16:27145977	G	A	33	0.030	32	66.062	4.087	1	65.000	0.000	32	1	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--8	chr16:27145977	G	A	33	0.121	29	65.897	4.850	4	66.750	3.948	29	4	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--GL	chr16:27145977	G	NA	39	0	39	64.000	7.650	0	0	0	39	0	C16orf82(dist=65490),KDM8(dist=68830)	intergenic	NA
RCC_T6--1	chr16:30749878	C	A	36	0.111	32	65.688	4.673	4	65.750	1.893	32	4	SRCAP	exonic	synonymous_SNV
RCC_T6--2	chr16:30749878	C	NA	25	0	25	63.280	5.683	0	0	0	25	0	SRCAP	exonic	synonymous_SNV
RCC_T6--3	chr16:30749878	C	NA	26	0	26	64.538	8.213	0	0	0	26	0	SRCAP	exonic	synonymous_SNV
RCC_T6--4	chr16:30749878	C	NA	47	0	47	63.894	7.582	0	0	0	47	0	SRCAP	exonic	synonymous_SNV
RCC_T6--5	chr16:30749878	C	NA	21	0	21	63.667	9.952	0	0	0	21	0	SRCAP	exonic	synonymous_SNV
RCC_T6--6	chr16:30749878	C	NA	38	0	38	64.711	8.285	0	0	0	38	0	SRCAP	exonic	synonymous_SNV
RCC_T6--7	chr16:30749878	C	NA	45	0	45	65.756	6.610	0	0	0	45	0	SRCAP	exonic	synonymous_SNV
RCC_T6--8	chr16:30749878	C	NA	27	0	27	63.259	8.742	0	0	0	27	0	SRCAP	exonic	synonymous_SNV
RCC_T6--GL	chr16:30749878	C	NA	33	0	33	63.606	7.516	0	0	0	33	0	SRCAP	exonic	synonymous_SNV
RCC_T6--1	chr16:32618935	C	NA	47	0	47	67.362	3.813	0	0	0	47	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--2	chr16:32618935	C	NA	36	0	36	67.444	5.593	0	0	0	36	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--3	chr16:32618935	C	G	42	0.024	41	65.732	8.185	1	64.000	0.000	41	1	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--4	chr16:32618935	C	G	37	0.054	35	66.629	7.013	2	64.000	9.899	35	2	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--5	chr16:32618935	C	NA	51	0	51	65.765	7.383	0	0	0	51	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--6	chr16:32618935	C	NA	44	0	44	67.205	3.849	0	0	0	44	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--7	chr16:32618935	C	NA	48	0	48	67.500	4.562	0	0	0	48	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--8	chr16:32618935	C	G	47	0.191	38	67.053	6.045	9	67.556	3.678	38	9	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--GL	chr16:32618935	C	NA	39	0	39	66.769	4.227	0	0	0	39	0	LOC390705(dist=317633),TP53TG3B(dist=65914)	intergenic	NA
RCC_T6--1	chr1:64254935	A	C	45	0.022	43	58.698	10.271	1	37.000	0.000	43	1	ROR1	intronic	NA
RCC_T6--2	chr1:64254935	A	C	51	0.039	49	57.449	10.546	2	38.000	1.414	49	2	ROR1	intronic	NA
RCC_T6--3	chr1:64254935	A	C	50	0.060	47	59.021	9.396	3	39.333	6.506	47	3	ROR1	intronic	NA
RCC_T6--4	chr1:64254935	A	C	35	0.114	29	54.172	10.212	4	35.250	2.630	29	4	ROR1	intronic	NA
RCC_T6--5	chr1:64254935	A	C	40	0.025	39	56.897	9.703	1	37.000	0.000	39	1	ROR1	intronic	NA
RCC_T6--6	chr1:64254935	A	C	41	0.024	39	59.103	10.940	1	37.000	0.000	39	1	ROR1	intronic	NA
RCC_T6--7	chr1:64254935	A	C	29	0.034	27	56.963	11.285	1	37.000	0.000	27	1	ROR1	intronic	NA
RCC_T6--8	chr1:64254935	A	C	36	0.167	30	54.367	11.746	6	43.000	8.649	30	6	ROR1	intronic	NA
RCC_T6--GL	chr1:64254935	A	NA	39	0	39	54.590	12.644	0	0	0	39	0	ROR1	intronic	NA
RCC_T6--1	chr16:50092951	C	NA	35	0	35	64.943	7.392	0	0	0	35	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--2	chr16:50092951	C	NA	24	0	24	64.667	9.942	0	0	0	24	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--3	chr16:50092951	C	NA	27	0	27	65.407	4.126	0	0	0	27	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--4	chr16:50092951	C	NA	41	0	41	66.171	6.296	0	0	0	41	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--5	chr16:50092951	C	NA	27	0	26	66.885	4.150	0	0	0	26	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--6	chr16:50092951	C	NA	27	0	27	64.259	7.754	0	0	0	27	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--7	chr16:50092951	C	A	33	0.121	29	67.172	5.714	4	66.750	1.258	29	4	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--8	chr16:50092951	C	NA	34	0	34	63.471	8.269	0	0	0	34	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--GL	chr16:50092951	C	NA	40	0	40	64.800	7.640	0	0	0	40	0	CNEP1R1(dist=21952),HEATR3(dist=6930)	intergenic	NA
RCC_T6--1	chr16:55527122	T	G	87	0.184	71	65.239	6.556	16	66.875	4.425	71	16	MMP2	exonic	synonymous_SNV
RCC_T6--2	chr16:55527122	T	G	92	0.109	82	64.695	7.910	10	63.600	2.797	82	10	MMP2	exonic	synonymous_SNV
RCC_T6--3	chr16:55527122	T	G	91	0.154	76	65.921	6.653	14	66.571	6.211	76	14	MMP2	exonic	synonymous_SNV
RCC_T6--4	chr16:55527122	T	G	83	0.024	81	64.420	7.992	2	63.000	1.414	81	2	MMP2	exonic	synonymous_SNV
RCC_T6--5	chr16:55527122	T	G	94	0.053	89	67.146	3.910	5	64.200	11.145	89	5	MMP2	exonic	synonymous_SNV
RCC_T6--6	chr16:55527122	T	G	49	0.327	33	65.667	6.102	16	67.125	3.364	33	16	MMP2	exonic	synonymous_SNV
RCC_T6--7	chr16:55527122	T	G	71	0.028	68	65.265	6.610	2	63.500	2.121	68	2	MMP2	exonic	synonymous_SNV
RCC_T6--8	chr16:55527122	T	G	84	0.143	72	64.583	8.021	12	66.833	4.130	72	12	MMP2	exonic	synonymous_SNV
RCC_T6--GL	chr16:55527122	T	NA	82	0	81	64.519	7.578	0	0	0	81	0	MMP2	exonic	synonymous_SNV
RCC_T6--1	chr16:57707240	A	G	51	0.118	45	67.000	8.158	6	66.500	5.089	45	6	GPR97	exonic	synonymous_SNV
RCC_T6--2	chr16:57707240	A	G	74	0.122	65	68.538	5.452	9	68.889	1.833	65	9	GPR97	exonic	synonymous_SNV
RCC_T6--3	chr16:57707240	A	G	49	0.061	46	67.522	5.019	3	60.333	11.930	46	3	GPR97	exonic	synonymous_SNV
RCC_T6--4	chr16:57707240	A	G	66	0.061	62	67.097	5.688	4	59.750	5.737	62	4	GPR97	exonic	synonymous_SNV
RCC_T6--5	chr16:57707240	A	NA	62	0	62	68.048	5.733	0	0	0	62	0	GPR97	exonic	synonymous_SNV
RCC_T6--6	chr16:57707240	A	NA	41	0	41	66.512	7.318	0	0	0	41	0	GPR97	exonic	synonymous_SNV
RCC_T6--7	chr16:57707240	A	NA	60	0	60	67.917	3.997	0	0	0	60	0	GPR97	exonic	synonymous_SNV
RCC_T6--8	chr16:57707240	A	G	40	0.175	33	66.364	7.512	7	65.143	8.668	33	7	GPR97	exonic	synonymous_SNV
RCC_T6--GL	chr16:57707240	A	NA	43	0	43	66.605	5.188	0	0	0	43	0	GPR97	exonic	synonymous_SNV
RCC_T6--1	chr16:67974047	C	NA	72	0	72	62.847	9.890	0	0	0	72	0	LCAT	exonic	synonymous_SNV
RCC_T6--2	chr16:67974047	C	NA	84	0	84	62.952	9.128	0	0	0	84	0	LCAT	exonic	synonymous_SNV
RCC_T6--3	chr16:67974047	C	T	55	0.036	53	63.283	10.031	2	44.500	16.263	53	2	LCAT	exonic	synonymous_SNV
RCC_T6--4	chr16:67974047	C	T	86	0.035	83	62.301	8.568	3	63.667	3.215	83	3	LCAT	exonic	synonymous_SNV
RCC_T6--5	chr16:67974047	C	NA	79	0	79	63.291	8.482	0	0	0	79	0	LCAT	exonic	synonymous_SNV
RCC_T6--6	chr16:67974047	C	T	57	0.018	56	63.054	7.937	1	65.000	0.000	56	1	LCAT	exonic	synonymous_SNV
RCC_T6--7	chr16:67974047	C	NA	97	0	97	63.495	9.751	0	0	0	97	0	LCAT	exonic	synonymous_SNV
RCC_T6--8	chr16:67974047	C	T	92	0.196	74	62.851	9.802	18	62.111	9.443	74	18	LCAT	exonic	synonymous_SNV
RCC_T6--GL	chr16:67974047	C	NA	54	0	54	61.093	10.792	0	0	0	54	0	LCAT	exonic	synonymous_SNV
RCC_T6--1	chr16:68026567	T	G	38	0.053	36	66.111	8.430	2	33.000	0.000	36	2	DPEP2	intronic	NA
RCC_T6--2	chr16:68026567	T	G	46	0.065	43	63.907	10.348	3	34.667	2.887	43	3	DPEP2	intronic	NA
RCC_T6--3	chr16:68026567	T	G	38	0.053	36	62.833	11.054	2	35.500	3.536	36	2	DPEP2	intronic	NA
RCC_T6--4	chr16:68026567	T	G	50	0.100	44	64.955	9.589	5	34.000	2.236	44	5	DPEP2	intronic	NA
RCC_T6--5	chr16:68026567	T	G	39	0.051	37	60.162	13.228	2	46.500	12.021	37	2	DPEP2	intronic	NA
RCC_T6--6	chr16:68026567	T	G	22	0.091	20	61.600	13.751	2	35.500	3.536	20	2	DPEP2	intronic	NA
RCC_T6--7	chr16:68026567	T	G	56	0.161	47	63.149	10.756	9	39.333	4.444	47	9	DPEP2	intronic	NA
RCC_T6--8	chr16:68026567	T	G	47	0.085	43	64.116	10.680	4	39.000	5.831	43	4	DPEP2	intronic	NA
RCC_T6--GL	chr16:68026567	T	NA	44	0	44	63.591	10.535	0	0	0	44	0	DPEP2	intronic	NA
RCC_T6--1	chr16:69973360	C	NA	30	0	30	68.367	3.855	0	0	0	30	0	WWP2	intronic	NA
RCC_T6--2	chr16:69973360	C	A	30	0.133	26	68.038	2.200	4	66.000	0.000	26	4	WWP2	intronic	NA
RCC_T6--3	chr16:69973360	C	NA	35	0	35	65.171	9.385	0	0	0	35	0	WWP2	intronic	NA
RCC_T6--4	chr16:69973360	C	NA	35	0	35	67.400	3.829	0	0	0	35	0	WWP2	intronic	NA
RCC_T6--5	chr16:69973360	C	NA	30	0	30	66.833	4.300	0	0	0	30	0	WWP2	intronic	NA
RCC_T6--6	chr16:69973360	C	NA	22	0	22	66.682	8.126	0	0	0	22	0	WWP2	intronic	NA
RCC_T6--7	chr16:69973360	C	NA	31	0	31	67.774	2.929	0	0	0	31	0	WWP2	intronic	NA
RCC_T6--8	chr16:69973360	C	NA	24	0	24	63.667	11.765	0	0	0	24	0	WWP2	intronic	NA
RCC_T6--GL	chr16:69973360	C	NA	40	0	40	65.725	7.383	0	0	0	40	0	WWP2	intronic	NA
RCC_T6--1	chr16:81190468	G	T	45	0.089	41	59.415	10.602	4	47.250	10.112	41	4	PKD1L2	exonic	unknown
RCC_T6--2	chr16:81190468	G	T	51	0.020	50	61.280	8.917	1	38.000	0.000	50	1	PKD1L2	exonic	unknown
RCC_T6--3	chr16:81190468	G	T	55	0.036	52	58.327	11.715	2	38.500	0.707	52	2	PKD1L2	exonic	unknown
RCC_T6--4	chr16:81190468	G	T	64	0.031	62	60.758	8.925	2	39.500	2.121	62	2	PKD1L2	exonic	unknown
RCC_T6--5	chr16:81190468	G	T	45	0.022	43	59.837	9.572	1	33.000	0.000	43	1	PKD1L2	exonic	unknown
RCC_T6--6	chr16:81190468	G	T	49	0.184	39	59.744	11.927	9	43.333	8.426	39	9	PKD1L2	exonic	unknown
RCC_T6--7	chr16:81190468	G	T	68	0.074	61	60.098	9.617	5	39.200	1.095	61	5	PKD1L2	exonic	unknown
RCC_T6--8	chr16:81190468	G	T	54	0.019	53	61.566	9.655	1	39.000	0.000	53	1	PKD1L2	exonic	unknown
RCC_T6--GL	chr16:81190468	G	NA	55	0	55	60.564	9.357	0	0	0	55	0	PKD1L2	exonic	unknown
RCC_T6--1	chr16:81736341	G	NA	36	0	36	65.361	8.459	0	0	0	36	0	CMIP	intronic	NA
RCC_T6--2	chr16:81736341	G	A	36	0.111	32	66.281	7.158	4	62.000	5.657	32	4	CMIP	intronic	NA
RCC_T6--3	chr16:81736341	G	NA	38	0	38	64.605	9.146	0	0	0	38	0	CMIP	intronic	NA
RCC_T6--4	chr16:81736341	G	NA	45	0	45	67.689	5.493	0	0	0	45	0	CMIP	intronic	NA
RCC_T6--5	chr16:81736341	G	NA	36	0	36	67.500	5.725	0	0	0	36	0	CMIP	intronic	NA
RCC_T6--6	chr16:81736341	G	NA	18	0	18	65.556	4.435	0	0	0	18	0	CMIP	intronic	NA
RCC_T6--7	chr16:81736341	G	NA	48	0	48	64.458	9.172	0	0	0	48	0	CMIP	intronic	NA
RCC_T6--8	chr16:81736341	G	NA	34	0	34	67.853	4.208	0	0	0	34	0	CMIP	intronic	NA
RCC_T6--GL	chr16:81736341	G	NA	36	0	36	65.500	6.322	0	0	0	36	0	CMIP	intronic	NA
RCC_T6--1	chr17:15212187	A	C	18	0.222	14	55.786	11.524	4	38.750	4.193	14	4	TEKT3	intronic	NA
RCC_T6--2	chr17:15212187	A	NA	45	0	45	57.244	10.238	0	0	0	45	0	TEKT3	intronic	NA
RCC_T6--3	chr17:15212187	A	NA	44	0	44	54.273	11.055	0	0	0	44	0	TEKT3	intronic	NA
RCC_T6--4	chr17:15212187	A	NA	51	0	50	54.560	10.280	0	0	0	50	0	TEKT3	intronic	NA
RCC_T6--5	chr17:15212187	A	C	71	0.042	68	57.206	10.363	3	34.000	1.732	68	3	TEKT3	intronic	NA
RCC_T6--6	chr17:15212187	A	C	41	0.073	38	55.368	10.326	3	36.000	0.000	38	3	TEKT3	intronic	NA
RCC_T6--7	chr17:15212187	A	NA	52	0	52	57.558	8.539	0	0	0	52	0	TEKT3	intronic	NA
RCC_T6--8	chr17:15212187	A	C	44	0.091	40	56.825	12.140	4	33.750	1.500	40	4	TEKT3	intronic	NA
RCC_T6--GL	chr17:15212187	A	NA	51	0	51	56.314	11.300	0	0	0	51	0	TEKT3	intronic	NA
RCC_T6--1	chr17:19568375	C	A	34	0.118	30	69.100	2.604	4	68.500	2.887	30	4	ALDH3A2	intronic	NA
RCC_T6--2	chr17:19568375	C	NA	42	0	42	67.476	4.820	0	0	0	42	0	ALDH3A2	intronic	NA
RCC_T6--3	chr17:19568375	C	NA	64	0	64	66.734	6.232	0	0	0	64	0	ALDH3A2	intronic	NA
RCC_T6--4	chr17:19568375	C	NA	62	0	62	67.403	3.952	0	0	0	62	0	ALDH3A2	intronic	NA
RCC_T6--5	chr17:19568375	C	A	55	0.018	54	66.185	8.333	1	72.000	0.000	54	1	ALDH3A2	intronic	NA
RCC_T6--6	chr17:19568375	C	NA	46	0	46	67.000	4.944	0	0	0	46	0	ALDH3A2	intronic	NA
RCC_T6--7	chr17:19568375	C	NA	84	0	84	67.310	5.766	0	0	0	84	0	ALDH3A2	intronic	NA
RCC_T6--8	chr17:19568375	C	NA	55	0	55	67.509	5.181	0	0	0	55	0	ALDH3A2	intronic	NA
RCC_T6--GL	chr17:19568375	C	NA	60	0	60	67.083	6.116	0	0	0	60	0	ALDH3A2	intronic	NA
RCC_T6--1	chr17:2490837	A	NA	51	0	51	65.431	6.580	0	0	0	51	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--2	chr17:2490837	A	NA	48	0	48	65.042	9.331	0	0	0	48	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--3	chr17:2490837	A	NA	32	0	32	64.375	8.369	0	0	0	32	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--4	chr17:2490837	A	NA	29	0	29	65.724	5.084	0	0	0	29	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--5	chr17:2490837	A	NA	52	0	52	64.269	8.539	0	0	0	52	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--6	chr17:2490837	A	T	16	0.188	13	65.385	4.942	3	48.667	8.021	13	3	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--7	chr17:2490837	A	NA	40	0	40	63.750	9.298	0	0	0	40	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--8	chr17:2490837	A	NA	28	0	28	63.286	10.579	0	0	0	28	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--GL	chr17:2490837	A	NA	50	0	50	64.100	8.714	0	0	0	50	0	METTL16(dist=75637),PAFAH1B1(dist=6086)	intergenic	NA
RCC_T6--1	chr17:26687484	G	C	52	0.077	48	67.083	5.453	4	64.750	0.500	48	4	TMEM199	intronic	NA
RCC_T6--2	chr17:26687484	G	C	52	0.077	48	68.146	3.649	4	63.250	2.062	48	4	TMEM199	intronic	NA
RCC_T6--3	chr17:26687484	G	NA	39	0	39	67.538	5.025	0	0	0	39	0	TMEM199	intronic	NA
RCC_T6--4	chr17:26687484	G	C	58	0.052	55	66.982	6.026	3	62.667	2.082	55	3	TMEM199	intronic	NA
RCC_T6--5	chr17:26687484	G	NA	52	0	52	67.173	6.665	0	0	0	52	0	TMEM199	intronic	NA
RCC_T6--6	chr17:26687484	G	C	46	0.043	43	66.349	8.496	2	60.000	8.485	43	2	TMEM199	intronic	NA
RCC_T6--7	chr17:26687484	G	C	47	0.043	45	65.867	6.591	2	64.500	0.707	45	2	TMEM199	intronic	NA
RCC_T6--8	chr17:26687484	G	C	48	0.146	41	67.024	5.470	7	62.429	6.803	41	7	TMEM199	intronic	NA
RCC_T6--GL	chr17:26687484	G	NA	45	0	45	66.978	5.848	0	0	0	45	0	TMEM199	intronic	NA
RCC_T6--1	chr17:26911153	A	T	69	0.145	59	66.881	7.534	10	68.400	3.307	59	10	SPAG5	intronic	NA
RCC_T6--2	chr17:26911153	A	T	75	0.120	66	67.682	3.496	9	67.000	4.528	66	9	SPAG5	intronic	NA
RCC_T6--3	chr17:26911153	A	T	71	0.155	60	67.400	6.029	11	68.909	2.844	60	11	SPAG5	intronic	NA
RCC_T6--4	chr17:26911153	A	T	67	0.015	66	66.864	5.044	1	49.000	0.000	66	1	SPAG5	intronic	NA
RCC_T6--5	chr17:26911153	A	T	78	0.051	74	66.338	3.921	4	68.000	2.309	74	4	SPAG5	intronic	NA
RCC_T6--6	chr17:26911153	A	T	45	0.378	28	69.071	3.321	17	68.824	2.899	28	17	SPAG5	intronic	NA
RCC_T6--7	chr17:26911153	A	T	63	0.032	61	68.180	4.467	2	63.000	9.899	61	2	SPAG5	intronic	NA
RCC_T6--8	chr17:26911153	A	T	70	0.300	49	67.490	6.345	21	66.714	4.268	49	21	SPAG5	intronic	NA
RCC_T6--GL	chr17:26911153	A	NA	84	0	84	67.036	5.698	0	0	0	84	0	SPAG5	intronic	NA
RCC_T6--1	chr17:35557469	C	NA	59	0	59	67.119	4.410	0	0	0	59	0	ACACA	intronic	NA
RCC_T6--2	chr17:35557469	C	NA	46	0	46	66.087	8.063	0	0	0	46	0	ACACA	intronic	NA
RCC_T6--3	chr17:35557469	C	NA	36	0	36	67.333	6.941	0	0	0	36	0	ACACA	intronic	NA
RCC_T6--4	chr17:35557469	C	NA	47	0	47	67.064	6.360	0	0	0	47	0	ACACA	intronic	NA
RCC_T6--5	chr17:35557469	C	NA	55	0	54	68.537	3.184	0	0	0	54	0	ACACA	intronic	NA
RCC_T6--6	chr17:35557469	C	NA	36	0	36	66.500	6.839	0	0	0	36	0	ACACA	intronic	NA
RCC_T6--7	chr17:35557469	C	NA	41	0	41	67.683	3.902	0	0	0	41	0	ACACA	intronic	NA
RCC_T6--8	chr17:35557469	C	A	48	0.125	41	68.951	3.435	6	69.167	3.488	41	6	ACACA	intronic	NA
RCC_T6--GL	chr17:35557469	C	NA	53	0	53	66.830	5.294	0	0	0	53	0	ACACA	intronic	NA
RCC_T6--1	chr17:37179751	G	NA	29	0	29	68.379	3.610	0	0	0	29	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--2	chr17:37179751	G	NA	40	0	40	68.075	4.364	0	0	0	40	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--3	chr17:37179751	G	NA	18	0	18	68.889	2.968	0	0	0	18	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--4	chr17:37179751	G	NA	20	0	20	66.900	4.025	0	0	0	20	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--5	chr17:37179751	G	NA	33	0	33	66.788	3.975	0	0	0	33	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--6	chr17:37179751	G	NA	22	0	22	68.409	3.660	0	0	0	22	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--7	chr17:37179751	G	NA	24	0	24	68.000	4.540	0	0	0	24	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--8	chr17:37179751	G	A	32	0.125	28	68.286	6.446	4	65.750	2.217	28	4	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--GL	chr17:37179751	G	NA	36	0	36	65.972	7.405	0	0	0	36	0	FBXO47(dist=56096),LRRC37A11P(dist=6408)	intergenic	NA
RCC_T6--1	chr17:38936083	C	NA	78	0	77	64.974	6.792	0	0	0	77	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:38936083	C	NA	84	0	84	65.179	5.151	0	0	0	84	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:38936083	C	NA	71	0	71	65.127	5.240	0	0	0	71	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:38936083	C	NA	78	0	78	64.513	6.508	0	0	0	78	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:38936083	C	NA	85	0	85	64.729	7.383	0	0	0	85	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:38936083	C	G	69	0.333	46	64.413	8.642	23	64.870	5.337	46	23	KRT27	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:38936083	C	NA	67	0	67	65.791	5.017	0	0	0	67	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:38936083	C	NA	71	0	71	65.014	7.190	0	0	0	71	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:38936083	C	NA	66	0	66	64.833	5.945	0	0	0	66	0	KRT27	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:41959853	G	NA	51	0	51	55.804	10.947	0	0	0	51	0	MPP2	exonic	synonymous_SNV
RCC_T6--2	chr17:41959853	G	NA	35	0	35	58.714	10.829	0	0	0	35	0	MPP2	exonic	synonymous_SNV
RCC_T6--3	chr17:41959853	G	T	30	0.200	23	56.435	11.293	6	38.167	2.639	23	6	MPP2	exonic	synonymous_SNV
RCC_T6--4	chr17:41959853	G	T	42	0.024	41	56.024	11.968	1	43.000	0.000	41	1	MPP2	exonic	synonymous_SNV
RCC_T6--5	chr17:41959853	G	NA	35	0	35	56.914	11.503	0	0	0	35	0	MPP2	exonic	synonymous_SNV
RCC_T6--6	chr17:41959853	G	T	32	0.062	29	55.345	12.099	2	35.000	2.828	29	2	MPP2	exonic	synonymous_SNV
RCC_T6--7	chr17:41959853	G	NA	46	0	45	55.267	10.592	0	0	0	45	0	MPP2	exonic	synonymous_SNV
RCC_T6--8	chr17:41959853	G	NA	28	0	28	56.643	11.895	0	0	0	28	0	MPP2	exonic	synonymous_SNV
RCC_T6--GL	chr17:41959853	G	NA	39	0	39	55.821	9.816	0	0	0	39	0	MPP2	exonic	synonymous_SNV
RCC_T6--1	chr17:42452044	G	NA	25	0	25	66.320	3.987	0	0	0	25	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:42452044	G	NA	22	0	22	64.727	6.840	0	0	0	22	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:42452044	G	NA	36	0	36	65.028	5.983	0	0	0	36	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:42452044	G	NA	37	0	37	65.216	6.977	0	0	0	37	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:42452044	G	A	32	0.125	28	62.179	13.559	4	60.500	7.141	28	4	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:42452044	G	NA	22	0	22	66.955	3.671	0	0	0	22	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:42452044	G	NA	45	0	44	65.432	6.862	0	0	0	44	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:42452044	G	NA	24	0	24	66.167	7.733	0	0	0	24	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:42452044	G	NA	33	0	33	63.545	9.131	0	0	0	33	0	ITGA2B	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:42853573	C	NA	42	0	42	63.786	5.646	0	0	0	42	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:42853573	C	NA	40	0	40	64.650	3.505	0	0	0	40	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:42853573	C	NA	47	0	47	64.064	6.106	0	0	0	47	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:42853573	C	NA	49	0	49	64.020	4.304	0	0	0	49	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:42853573	C	A	36	0.111	32	60.812	8.514	4	65.000	1.414	32	4	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:42853573	C	NA	39	0	39	64.000	6.013	0	0	0	39	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:42853573	C	NA	51	0	51	63.412	7.239	0	0	0	51	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:42853573	C	NA	42	0	42	61.881	8.350	0	0	0	42	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:42853573	C	NA	40	0	40	63.550	6.441	0	0	0	40	0	ADAM11	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:60215007	C	NA	36	0	36	66.722	7.440	0	0	0	36	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--2	chr17:60215007	C	A	29	0.138	25	65.200	8.026	4	63.500	4.123	25	4	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--3	chr17:60215007	C	NA	39	0	39	62.821	10.865	0	0	0	39	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--4	chr17:60215007	C	NA	35	0	35	64.314	10.284	0	0	0	35	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--5	chr17:60215007	C	NA	30	0	30	66.567	4.454	0	0	0	30	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--6	chr17:60215007	C	NA	37	0	37	64.351	10.272	0	0	0	37	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--7	chr17:60215007	C	NA	32	0	32	66.312	3.805	0	0	0	32	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--8	chr17:60215007	C	NA	27	0	27	63.074	11.770	0	0	0	27	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--GL	chr17:60215007	C	NA	34	0	34	63.941	8.883	0	0	0	34	0	MED13(dist=72364),TBC1D3P2(dist=127060)	intergenic	NA
RCC_T6--1	chr17:63640211	C	NA	21	0	21	69.238	2.448	0	0	0	21	0	CEP112	intronic	NA
RCC_T6--2	chr17:63640211	C	NA	31	0	31	69.452	2.885	0	0	0	31	0	CEP112	intronic	NA
RCC_T6--3	chr17:63640211	C	NA	34	0	34	67.765	4.506	0	0	0	34	0	CEP112	intronic	NA
RCC_T6--4	chr17:63640211	C	NA	45	0	45	65.844	6.256	0	0	0	45	0	CEP112	intronic	NA
RCC_T6--5	chr17:63640211	C	NA	25	0	25	68.000	7.778	0	0	0	25	0	CEP112	intronic	NA
RCC_T6--6	chr17:63640211	C	NA	31	0	31	68.516	3.043	0	0	0	31	0	CEP112	intronic	NA
RCC_T6--7	chr17:63640211	C	A	35	0.114	31	68.387	4.047	4	67.000	0.000	31	4	CEP112	intronic	NA
RCC_T6--8	chr17:63640211	C	NA	35	0	35	67.057	5.308	0	0	0	35	0	CEP112	intronic	NA
RCC_T6--GL	chr17:63640211	C	NA	37	0	37	66.757	5.913	0	0	0	37	0	CEP112	intronic	NA
RCC_T6--1	chr17:67279957	A	G	23	0.217	18	69.278	2.803	5	61.200	2.588	18	5	ABCA5	intronic	NA
RCC_T6--2	chr17:67279957	A	G	26	0.077	24	69.417	1.932	2	65.000	0.000	24	2	ABCA5	intronic	NA
RCC_T6--3	chr17:67279957	A	G	33	0.091	30	68.467	4.629	3	59.000	10.817	30	3	ABCA5	intronic	NA
RCC_T6--4	chr17:67279957	A	G	10	0.100	9	68.556	4.953	1	65.000	0.000	9	1	ABCA5	intronic	NA
RCC_T6--5	chr17:67279957	A	G	32	0.062	30	69.733	2.888	2	63.000	2.828	30	2	ABCA5	intronic	NA
RCC_T6--6	chr17:67279957	A	G	20	0.150	17	69.176	3.779	3	61.667	3.512	17	3	ABCA5	intronic	NA
RCC_T6--7	chr17:67279957	A	G	31	0.032	30	69.100	3.689	1	64.000	0.000	30	1	ABCA5	intronic	NA
RCC_T6--8	chr17:67279957	A	G	27	0.074	25	68.160	3.716	2	61.500	0.707	25	2	ABCA5	intronic	NA
RCC_T6--GL	chr17:67279957	A	NA	33	0	33	68.515	3.261	0	0	0	33	0	ABCA5	intronic	NA
RCC_T6--1	chr17:67521072	A	C	87	0.092	79	67.734	5.060	8	69.375	2.669	79	8	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:67521072	A	C	76	0.079	70	68.371	4.774	6	69.167	1.472	70	6	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:67521072	A	C	86	0.116	76	66.066	6.726	10	65.800	9.953	76	10	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:67521072	A	C	112	0.036	108	67.500	6.353	4	69.000	3.367	108	4	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:67521072	A	C	98	0.071	91	68.033	4.342	7	65.000	11.733	91	7	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:67521072	A	C	101	0.248	76	63.868	10.155	25	66.160	10.053	76	25	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:67521072	A	C	90	0.011	89	67.551	7.920	1	72.000	0.000	89	1	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:67521072	A	C	119	0.160	100	67.770	5.905	19	67.842	7.841	100	19	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:67521072	A	NA	118	0	118	66.356	6.729	0	0	0	118	0	MAP2K6	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:73830160	T	NA	36	0	36	64.889	8.918	0	0	0	36	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:73830160	T	C	40	0.025	39	66.282	4.377	1	39.000	0.000	39	1	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:73830160	T	NA	37	0	37	65.649	6.889	0	0	0	37	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:73830160	T	NA	48	0	48	65.208	4.890	0	0	0	48	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:73830160	T	NA	23	0	23	66.217	5.784	0	0	0	23	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:73830160	T	NA	29	0	29	62.138	10.812	0	0	0	29	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:73830160	T	NA	25	0	25	66.840	3.145	0	0	0	25	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:73830160	T	C	29	0.138	25	64.800	6.892	4	70.250	1.708	25	4	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:73830160	T	NA	37	0	37	62.378	10.745	0	0	0	37	0	UNC13D	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:7406653	C	NA	35	0	35	66.057	7.344	0	0	0	35	0	POLR2A	intronic	NA
RCC_T6--2	chr17:7406653	C	NA	40	0	40	67.150	6.727	0	0	0	40	0	POLR2A	intronic	NA
RCC_T6--3	chr17:7406653	C	NA	34	0	34	66.765	3.560	0	0	0	34	0	POLR2A	intronic	NA
RCC_T6--4	chr17:7406653	C	NA	23	0	23	65.870	8.193	0	0	0	23	0	POLR2A	intronic	NA
RCC_T6--5	chr17:7406653	C	NA	29	0	29	66.621	5.381	0	0	0	29	0	POLR2A	intronic	NA
RCC_T6--6	chr17:7406653	C	NA	15	0	15	67.667	3.063	0	0	0	15	0	POLR2A	intronic	NA
RCC_T6--7	chr17:7406653	C	NA	41	0	41	68.463	3.421	0	0	0	41	0	POLR2A	intronic	NA
RCC_T6--8	chr17:7406653	C	A	20	0.200	16	66.250	8.029	4	68.500	3.512	16	4	POLR2A	intronic	NA
RCC_T6--GL	chr17:7406653	C	NA	33	0	33	67.061	3.774	0	0	0	33	0	POLR2A	intronic	NA
RCC_T6--1	chr17:7579415	C	NA	53	0	53	67.604	4.153	0	0	0	53	0	TP53	exonic	stopgain_SNV
RCC_T6--2	chr17:7579415	C	NA	56	0	56	65.161	7.883	0	0	0	56	0	TP53	exonic	stopgain_SNV
RCC_T6--3	chr17:7579415	C	NA	38	0	38	63.947	9.737	0	0	0	38	0	TP53	exonic	stopgain_SNV
RCC_T6--4	chr17:7579415	C	NA	70	0	70	65.229	7.931	0	0	0	70	0	TP53	exonic	stopgain_SNV
RCC_T6--5	chr17:7579415	C	NA	82	0	82	65.390	8.919	0	0	0	82	0	TP53	exonic	stopgain_SNV
RCC_T6--6	chr17:7579415	C	T	41	0.537	19	60.895	11.508	22	63.773	10.207	19	22	TP53	exonic	stopgain_SNV
RCC_T6--7	chr17:7579415	C	NA	75	0	75	64.987	8.746	0	0	0	75	0	TP53	exonic	stopgain_SNV
RCC_T6--8	chr17:7579415	C	NA	63	0	63	64.460	7.868	0	0	0	63	0	TP53	exonic	stopgain_SNV
RCC_T6--GL	chr17:7579415	C	NA	57	0	57	64.877	9.077	0	0	0	57	0	TP53	exonic	stopgain_SNV
RCC_T6--1	chr17:7623129	C	NA	24	0	24	61.917	10.689	0	0	0	24	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:7623129	C	NA	30	0	30	66.433	4.384	0	0	0	30	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:7623129	C	NA	30	0	30	62.733	8.517	0	0	0	30	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:7623129	C	NA	29	0	29	64.690	7.281	0	0	0	29	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:7623129	C	NA	33	0	33	63.879	8.706	0	0	0	33	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:7623129	C	T	20	0.200	16	64.812	5.833	4	64.250	2.217	16	4	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:7623129	C	NA	20	0	20	65.150	8.356	0	0	0	20	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:7623129	C	NA	21	0	21	64.000	7.127	0	0	0	21	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:7623129	C	NA	35	0	35	63.571	7.724	0	0	0	35	0	DNAH2	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:7623130	T	NA	24	0	24	61.542	9.762	0	0	0	24	0	DNAH2	exonic	synonymous_SNV
RCC_T6--2	chr17:7623130	T	NA	30	0	30	66.467	4.006	0	0	0	30	0	DNAH2	exonic	synonymous_SNV
RCC_T6--3	chr17:7623130	T	NA	29	0	29	62.517	8.883	0	0	0	29	0	DNAH2	exonic	synonymous_SNV
RCC_T6--4	chr17:7623130	T	NA	30	0	30	63.600	7.784	0	0	0	30	0	DNAH2	exonic	synonymous_SNV
RCC_T6--5	chr17:7623130	T	NA	32	0	32	64.031	8.982	0	0	0	32	0	DNAH2	exonic	synonymous_SNV
RCC_T6--6	chr17:7623130	T	A	20	0.200	16	62.875	8.492	4	64.500	1.732	16	4	DNAH2	exonic	synonymous_SNV
RCC_T6--7	chr17:7623130	T	NA	21	0	21	63.571	8.400	0	0	0	21	0	DNAH2	exonic	synonymous_SNV
RCC_T6--8	chr17:7623130	T	NA	21	0	21	64.048	8.121	0	0	0	21	0	DNAH2	exonic	synonymous_SNV
RCC_T6--GL	chr17:7623130	T	NA	35	0	35	63.457	7.318	0	0	0	35	0	DNAH2	exonic	synonymous_SNV
RCC_T6--1	chr17:76388721	C	NA	82	0	82	68.390	5.232	0	0	0	82	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:76388721	C	NA	115	0	115	68.348	4.037	0	0	0	115	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:76388721	C	NA	99	0	99	67.212	5.585	0	0	0	99	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:76388721	C	NA	118	0	118	67.661	5.202	0	0	0	118	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:76388721	C	NA	88	0	88	68.386	4.167	0	0	0	88	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:76388721	C	T	93	0.194	75	67.013	6.751	18	65.556	9.243	75	18	PGS1	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:76388721	C	NA	104	0	104	67.827	5.041	0	0	0	104	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:76388721	C	NA	140	0	140	67.914	5.342	0	0	0	140	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:76388721	C	NA	80	0	80	66.475	8.036	0	0	0	80	0	PGS1	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:78338261	G	A	33	0.121	29	63.966	10.575	4	59.500	7.895	29	4	RNF213	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:78338261	G	NA	41	0	41	65.171	7.606	0	0	0	41	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:78338261	G	NA	37	0	37	62.649	8.453	0	0	0	37	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:78338261	G	NA	54	0	54	60.130	11.584	0	0	0	54	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:78338261	G	NA	39	0	39	64.744	6.719	0	0	0	39	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:78338261	G	NA	33	0	33	61.727	9.625	0	0	0	33	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:78338261	G	NA	33	0	33	66.212	4.904	0	0	0	33	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:78338261	G	NA	40	0	40	64.425	8.360	0	0	0	40	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:78338261	G	NA	35	0	35	62.314	8.101	0	0	0	35	0	RNF213	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:79532633	C	A	34	0.118	30	65.000	8.722	4	63.000	7.257	30	4	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--2	chr17:79532633	C	NA	40	0	40	65.325	9.102	0	0	0	40	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--3	chr17:79532633	C	NA	47	0	47	66.064	3.668	0	0	0	47	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--4	chr17:79532633	C	NA	54	0	54	66.926	4.982	0	0	0	54	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--5	chr17:79532633	C	NA	37	0	37	65.297	7.149	0	0	0	37	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--6	chr17:79532633	C	NA	30	0	30	65.767	7.514	0	0	0	30	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--7	chr17:79532633	C	NA	62	0	62	67.371	5.487	0	0	0	62	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--8	chr17:79532633	C	NA	43	0	43	66.326	5.366	0	0	0	43	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--GL	chr17:79532633	C	NA	35	0	35	65.143	6.450	0	0	0	35	0	NPLOC4	exonic	nonsynonymous_SNV
RCC_T6--1	chr17:80885890	G	A	28	0.143	24	66.958	2.926	4	67.250	4.113	24	4	TBCD	intronic	NA
RCC_T6--2	chr17:80885890	G	NA	43	0	43	66.907	2.950	0	0	0	43	0	TBCD	intronic	NA
RCC_T6--3	chr17:80885890	G	NA	39	0	39	65.231	5.579	0	0	0	39	0	TBCD	intronic	NA
RCC_T6--4	chr17:80885890	G	NA	52	0	52	62.923	8.738	0	0	0	52	0	TBCD	intronic	NA
RCC_T6--5	chr17:80885890	G	NA	38	0	38	65.500	6.685	0	0	0	38	0	TBCD	intronic	NA
RCC_T6--6	chr17:80885890	G	NA	31	0	31	61.613	11.319	0	0	0	31	0	TBCD	intronic	NA
RCC_T6--7	chr17:80885890	G	NA	52	0	52	63.346	8.258	0	0	0	52	0	TBCD	intronic	NA
RCC_T6--8	chr17:80885890	G	NA	36	0	36	62.833	8.463	0	0	0	36	0	TBCD	intronic	NA
RCC_T6--GL	chr17:80885890	G	NA	38	0	38	64.947	5.162	0	0	0	38	0	TBCD	intronic	NA
RCC_T6--1	chr1:7906470	G	NA	91	0	91	67.462	5.502	0	0	0	91	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--2	chr1:7906470	G	NA	90	0	90	66.833	6.165	0	0	0	90	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--3	chr1:7906470	G	T	78	0.051	73	66.658	6.549	4	58.250	12.500	73	4	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--4	chr1:7906470	G	T	69	0.014	68	66.735	6.932	1	71.000	0.000	68	1	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--5	chr1:7906470	G	NA	85	0	85	67.576	4.552	0	0	0	85	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--6	chr1:7906470	G	NA	74	0	74	65.838	7.192	0	0	0	74	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--7	chr1:7906470	G	NA	79	0	79	66.873	6.739	0	0	0	79	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--8	chr1:7906470	G	T	92	0.272	67	66.015	7.376	25	65.240	7.699	67	25	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--GL	chr1:7906470	G	NA	79	0	79	66.430	4.706	0	0	0	79	0	PER3(dist=1230),UTS2(dist=1202)	intergenic	NA
RCC_T6--1	chr18:10795005	G	A	44	0.136	38	68.263	3.391	6	67.833	0.983	38	6	PIEZO2	intronic	NA
RCC_T6--2	chr18:10795005	G	A	52	0.173	43	67.581	3.923	9	66.444	2.744	43	9	PIEZO2	intronic	NA
RCC_T6--3	chr18:10795005	G	A	51	0.059	48	66.479	4.820	3	57.000	20.881	48	3	PIEZO2	intronic	NA
RCC_T6--4	chr18:10795005	G	A	66	0.015	65	66.138	6.699	1	72.000	0.000	65	1	PIEZO2	intronic	NA
RCC_T6--5	chr18:10795005	G	NA	51	0	51	67.490	4.197	0	0	0	51	0	PIEZO2	intronic	NA
RCC_T6--6	chr18:10795005	G	A	61	0.246	46	66.196	6.358	15	66.267	5.625	46	15	PIEZO2	intronic	NA
RCC_T6--7	chr18:10795005	G	NA	52	0	52	66.615	6.634	0	0	0	52	0	PIEZO2	intronic	NA
RCC_T6--8	chr18:10795005	G	A	45	0.022	44	65.273	6.701	1	72.000	0.000	44	1	PIEZO2	intronic	NA
RCC_T6--GL	chr18:10795005	G	NA	46	0	46	65.804	3.964	0	0	0	46	0	PIEZO2	intronic	NA
RCC_T6--1	chr18:13049956	T	A	43	0.023	41	67.610	5.945	1	62.000	0.000	41	1	CEP192	intronic	NA
RCC_T6--2	chr18:13049956	T	A	55	0.127	48	67.875	4.975	7	63.143	1.864	48	7	CEP192	intronic	NA
RCC_T6--3	chr18:13049956	T	A	51	0.039	48	67.646	5.741	2	57.000	11.314	48	2	CEP192	intronic	NA
RCC_T6--4	chr18:13049956	T	A	49	0.082	44	68.091	6.190	4	63.250	1.500	44	4	CEP192	intronic	NA
RCC_T6--5	chr18:13049956	T	A	57	0.088	51	66.941	6.169	5	63.800	1.643	51	5	CEP192	intronic	NA
RCC_T6--6	chr18:13049956	T	A	52	0.096	47	65.660	8.297	5	63.600	1.949	47	5	CEP192	intronic	NA
RCC_T6--7	chr18:13049956	T	A	42	0.048	39	68.410	2.980	2	63.500	2.121	39	2	CEP192	intronic	NA
RCC_T6--8	chr18:13049956	T	A	69	0.058	64	68.156	3.734	4	64.250	1.500	64	4	CEP192	intronic	NA
RCC_T6--GL	chr18:13049956	T	NA	51	0	50	65.840	7.402	0	0	0	50	0	CEP192	intronic	NA
RCC_T6--1	chr18:7017358	G	A	36	0.111	32	67.281	6.980	4	65.250	0.500	32	4	LAMA1	exonic	synonymous_SNV
RCC_T6--2	chr18:7017358	G	NA	22	0	22	67.364	8.232	0	0	0	22	0	LAMA1	exonic	synonymous_SNV
RCC_T6--3	chr18:7017358	G	NA	21	0	21	68.048	3.584	0	0	0	21	0	LAMA1	exonic	synonymous_SNV
RCC_T6--4	chr18:7017358	G	NA	57	0	57	68.053	3.957	0	0	0	57	0	LAMA1	exonic	synonymous_SNV
RCC_T6--5	chr18:7017358	G	NA	29	0	29	66.310	7.555	0	0	0	29	0	LAMA1	exonic	synonymous_SNV
RCC_T6--6	chr18:7017358	G	NA	27	0	27	65.630	8.261	0	0	0	27	0	LAMA1	exonic	synonymous_SNV
RCC_T6--7	chr18:7017358	G	NA	42	0	42	68.738	3.269	0	0	0	42	0	LAMA1	exonic	synonymous_SNV
RCC_T6--8	chr18:7017358	G	NA	48	0	48	67.938	6.051	0	0	0	48	0	LAMA1	exonic	synonymous_SNV
RCC_T6--GL	chr18:7017358	G	NA	40	0	40	67.950	4.302	0	0	0	40	0	LAMA1	exonic	synonymous_SNV
RCC_T6--1	chr19:10893679	C	NA	52	0	52	66.000	7.412	0	0	0	52	0	DNM2	exonic	synonymous_SNV
RCC_T6--2	chr19:10893679	C	NA	47	0	47	68.447	3.706	0	0	0	47	0	DNM2	exonic	synonymous_SNV
RCC_T6--3	chr19:10893679	C	NA	39	0	39	67.308	5.302	0	0	0	39	0	DNM2	exonic	synonymous_SNV
RCC_T6--4	chr19:10893679	C	NA	62	0	62	66.548	6.342	0	0	0	62	0	DNM2	exonic	synonymous_SNV
RCC_T6--5	chr19:10893679	C	A	61	0.033	59	68.169	3.820	2	47.500	20.506	59	2	DNM2	exonic	synonymous_SNV
RCC_T6--6	chr19:10893679	C	NA	36	0	36	65.472	6.540	0	0	0	36	0	DNM2	exonic	synonymous_SNV
RCC_T6--7	chr19:10893679	C	NA	41	0	41	66.049	6.379	0	0	0	41	0	DNM2	exonic	synonymous_SNV
RCC_T6--8	chr19:10893679	C	A	32	0.125	28	65.107	7.490	4	68.250	3.862	28	4	DNM2	exonic	synonymous_SNV
RCC_T6--GL	chr19:10893679	C	NA	49	0	49	65.633	6.037	0	0	0	49	0	DNM2	exonic	synonymous_SNV
RCC_T6--1	chr19:13988306	C	NA	29	0	29	64.034	7.679	0	0	0	29	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--2	chr19:13988306	C	NA	26	0	26	63.615	5.254	0	0	0	26	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--3	chr19:13988306	C	NA	33	0	32	63.688	7.055	0	0	0	32	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--4	chr19:13988306	C	NA	42	0	42	63.571	7.753	0	0	0	42	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--5	chr19:13988306	C	A	35	0.114	31	63.742	8.238	4	60.750	7.932	31	4	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--6	chr19:13988306	C	NA	25	0	25	63.440	9.051	0	0	0	25	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--7	chr19:13988306	C	NA	49	0	49	63.673	6.209	0	0	0	49	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--8	chr19:13988306	C	NA	26	0	26	64.538	9.192	0	0	0	26	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--GL	chr19:13988306	C	NA	35	0	35	63.971	6.056	0	0	0	35	0	NANOS3	exonic	nonsynonymous_SNV
RCC_T6--1	chr19:14779653	G	A	53	0.245	40	69.075	3.190	13	69.538	3.597	40	13	EMR3	exonic	synonymous_SNV
RCC_T6--2	chr19:14779653	G	A	93	0.043	89	69.629	3.043	4	68.500	2.082	89	4	EMR3	exonic	synonymous_SNV
RCC_T6--3	chr19:14779653	G	A	54	0.130	47	68.000	6.919	7	69.000	3.697	47	7	EMR3	exonic	synonymous_SNV
RCC_T6--4	chr19:14779653	G	A	106	0.075	98	67.306	6.148	8	68.000	5.682	98	8	EMR3	exonic	synonymous_SNV
RCC_T6--5	chr19:14779653	G	A	53	0.094	48	69.042	3.798	5	69.200	3.421	48	5	EMR3	exonic	synonymous_SNV
RCC_T6--6	chr19:14779653	G	A	51	0.294	36	69.194	3.362	15	67.333	4.731	36	15	EMR3	exonic	synonymous_SNV
RCC_T6--7	chr19:14779653	G	A	73	0.014	72	69.167	2.922	1	72.000	0.000	72	1	EMR3	exonic	synonymous_SNV
RCC_T6--8	chr19:14779653	G	A	84	0.202	67	68.164	6.156	17	67.941	5.889	67	17	EMR3	exonic	synonymous_SNV
RCC_T6--GL	chr19:14779653	G	NA	61	0	61	67.951	6.262	0	0	0	61	0	EMR3	exonic	synonymous_SNV
RCC_T6--1	chr19:15341840	G	NA	43	0	43	68.279	2.906	0	0	0	43	0	EPHX3	exonic	synonymous_SNV
RCC_T6--2	chr19:15341840	G	NA	47	0	47	67.277	4.367	0	0	0	47	0	EPHX3	exonic	synonymous_SNV
RCC_T6--3	chr19:15341840	G	NA	55	0	55	65.964	6.608	0	0	0	55	0	EPHX3	exonic	synonymous_SNV
RCC_T6--4	chr19:15341840	G	NA	49	0	49	65.694	6.262	0	0	0	49	0	EPHX3	exonic	synonymous_SNV
RCC_T6--5	chr19:15341840	G	A	42	0.143	36	66.444	3.895	6	60.000	11.524	36	6	EPHX3	exonic	synonymous_SNV
RCC_T6--6	chr19:15341840	G	NA	25	0	25	66.800	6.048	0	0	0	25	0	EPHX3	exonic	synonymous_SNV
RCC_T6--7	chr19:15341840	G	NA	43	0	43	66.163	6.264	0	0	0	43	0	EPHX3	exonic	synonymous_SNV
RCC_T6--8	chr19:15341840	G	NA	43	0	43	67.721	3.673	0	0	0	43	0	EPHX3	exonic	synonymous_SNV
RCC_T6--GL	chr19:15341840	G	NA	50	0	50	65.660	7.252	0	0	0	50	0	EPHX3	exonic	synonymous_SNV
RCC_T6--1	chr19:18119585	C	NA	44	0	44	66.659	6.217	0	0	0	44	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--2	chr19:18119585	C	NA	57	0	57	66.509	8.170	0	0	0	57	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--3	chr19:18119585	C	NA	55	0	55	66.364	4.900	0	0	0	55	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--4	chr19:18119585	C	NA	75	0	75	65.747	6.007	0	0	0	75	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--5	chr19:18119585	C	NA	50	0	50	64.600	9.760	0	0	0	50	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--6	chr19:18119585	C	NA	49	0	49	65.429	7.027	0	0	0	49	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--7	chr19:18119585	C	NA	78	0	78	64.667	8.667	0	0	0	78	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--8	chr19:18119585	C	A	26	0.154	22	66.136	8.397	4	61.000	6.000	22	4	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr19:18119585	C	NA	38	0	38	66.763	5.334	0	0	0	38	0	ARRDC2	exonic	nonsynonymous_SNV
RCC_T6--1	chr19:18887973	T	C	47	0.085	43	61.116	10.215	4	35.500	5.000	43	4	CRTC1	intronic	NA
RCC_T6--2	chr19:18887973	T	NA	46	0	46	58.196	12.137	0	0	0	46	0	CRTC1	intronic	NA
RCC_T6--3	chr19:18887973	T	NA	36	0	36	58.083	11.773	0	0	0	36	0	CRTC1	intronic	NA
RCC_T6--4	chr19:18887973	T	C	49	0.082	45	57.956	10.451	4	35.250	1.500	45	4	CRTC1	intronic	NA
RCC_T6--5	chr19:18887973	T	C	55	0.018	54	57.648	11.324	1	33.000	0.000	54	1	CRTC1	intronic	NA
RCC_T6--6	chr19:18887973	T	C	42	0.024	41	57.902	12.292	1	33.000	0.000	41	1	CRTC1	intronic	NA
RCC_T6--7	chr19:18887973	T	C	43	0.070	40	57.350	11.568	3	36.333	5.774	40	3	CRTC1	intronic	NA
RCC_T6--8	chr19:18887973	T	C	37	0.189	30	58.567	11.144	7	37.000	4.472	30	7	CRTC1	intronic	NA
RCC_T6--GL	chr19:18887973	T	NA	37	0	36	58.500	10.697	0	0	0	36	0	CRTC1	intronic	NA
RCC_T6--1	chr1:93656318	C	NA	46	0	46	68.413	4.047	0	0	0	46	0	CCDC18	intronic	NA
RCC_T6--2	chr1:93656318	C	NA	39	0	39	69.462	2.836	0	0	0	39	0	CCDC18	intronic	NA
RCC_T6--3	chr1:93656318	C	T	36	0.056	34	67.441	6.081	2	70.500	0.707	34	2	CCDC18	intronic	NA
RCC_T6--4	chr1:93656318	C	T	27	0.037	26	68.885	3.266	1	72.000	0.000	26	1	CCDC18	intronic	NA
RCC_T6--5	chr1:93656318	C	NA	28	0	28	68.393	6.696	0	0	0	28	0	CCDC18	intronic	NA
RCC_T6--6	chr1:93656318	C	NA	25	0	25	68.080	4.804	0	0	0	25	0	CCDC18	intronic	NA
RCC_T6--7	chr1:93656318	C	NA	22	0	22	69.091	3.435	0	0	0	22	0	CCDC18	intronic	NA
RCC_T6--8	chr1:93656318	C	T	42	0.167	35	70.000	3.343	7	67.857	4.059	35	7	CCDC18	intronic	NA
RCC_T6--GL	chr1:93656318	C	NA	41	0	41	67.195	7.356	0	0	0	41	0	CCDC18	intronic	NA
RCC_T6--1	chr19:39914875	C	A	81	0.123	71	66.845	5.025	10	66.200	4.872	71	10	PLEKHG2	exonic	synonymous_SNV
RCC_T6--2	chr19:39914875	C	A	127	0.173	105	66.200	5.991	22	68.273	3.508	105	22	PLEKHG2	exonic	synonymous_SNV
RCC_T6--3	chr19:39914875	C	A	113	0.168	93	65.656	5.704	19	67.895	3.542	93	19	PLEKHG2	exonic	synonymous_SNV
RCC_T6--4	chr19:39914875	C	A	116	0.060	109	65.862	5.797	7	66.000	3.697	109	7	PLEKHG2	exonic	synonymous_SNV
RCC_T6--5	chr19:39914875	C	A	129	0.070	120	65.733	5.118	9	68.111	4.137	120	9	PLEKHG2	exonic	synonymous_SNV
RCC_T6--6	chr19:39914875	C	A	87	0.241	66	63.848	6.794	21	63.810	8.418	66	21	PLEKHG2	exonic	synonymous_SNV
RCC_T6--7	chr19:39914875	C	A	144	0.056	136	65.515	6.105	8	66.750	2.964	136	8	PLEKHG2	exonic	synonymous_SNV
RCC_T6--8	chr19:39914875	C	A	116	0.233	89	65.494	8.172	27	66.815	4.740	89	27	PLEKHG2	exonic	synonymous_SNV
RCC_T6--GL	chr19:39914875	C	NA	110	0	110	64.800	7.160	0	0	0	110	0	PLEKHG2	exonic	synonymous_SNV
RCC_T6--1	chr19:44242419	C	NA	34	0	34	69.206	5.840	0	0	0	34	0	SMG9	intronic	NA
RCC_T6--2	chr19:44242419	C	NA	23	0	23	68.652	3.352	0	0	0	23	0	SMG9	intronic	NA
RCC_T6--3	chr19:44242419	C	NA	27	0	27	67.556	5.989	0	0	0	27	0	SMG9	intronic	NA
RCC_T6--4	chr19:44242419	C	NA	41	0	41	66.829	6.595	0	0	0	41	0	SMG9	intronic	NA
RCC_T6--5	chr19:44242419	C	NA	34	0	34	68.059	3.533	0	0	0	34	0	SMG9	intronic	NA
RCC_T6--6	chr19:44242419	C	NA	29	0	29	64.414	9.763	0	0	0	29	0	SMG9	intronic	NA
RCC_T6--7	chr19:44242419	C	T	32	0.125	28	69.179	2.342	4	65.750	6.946	28	4	SMG9	intronic	NA
RCC_T6--8	chr19:44242419	C	NA	22	0	22	66.955	7.883	0	0	0	22	0	SMG9	intronic	NA
RCC_T6--GL	chr19:44242419	C	NA	33	0	33	66.939	6.194	0	0	0	33	0	SMG9	intronic	NA
RCC_T6--1	chr19:46338321	C	NA	29	0	29	65.621	6.598	0	0	0	29	0	SYMPK	intronic	NA
RCC_T6--2	chr19:46338321	C	NA	51	0	50	67.740	3.475	0	0	0	50	0	SYMPK	intronic	NA
RCC_T6--3	chr19:46338321	C	NA	37	0	37	64.568	8.238	0	0	0	37	0	SYMPK	intronic	NA
RCC_T6--4	chr19:46338321	C	NA	54	0	54	64.778	9.322	0	0	0	54	0	SYMPK	intronic	NA
RCC_T6--5	chr19:46338321	C	T	36	0.111	32	64.719	8.785	4	68.250	2.062	32	4	SYMPK	intronic	NA
RCC_T6--6	chr19:46338321	C	NA	31	0	31	64.710	7.904	0	0	0	31	0	SYMPK	intronic	NA
RCC_T6--7	chr19:46338321	C	NA	44	0	44	64.636	10.325	0	0	0	44	0	SYMPK	intronic	NA
RCC_T6--8	chr19:46338321	C	NA	32	0	32	67.375	4.771	0	0	0	32	0	SYMPK	intronic	NA
RCC_T6--GL	chr19:46338321	C	NA	50	0	50	67.600	6.041	0	0	0	50	0	SYMPK	intronic	NA
RCC_T6--1	chr19:49403983	C	NA	31	0	30	64.700	7.693	0	0	0	30	0	NUCB1	intronic	NA
RCC_T6--2	chr19:49403983	C	A	32	0.125	28	65.964	3.133	4	63.000	8.367	28	4	NUCB1	intronic	NA
RCC_T6--3	chr19:49403983	C	NA	19	0	19	63.947	6.014	0	0	0	19	0	NUCB1	intronic	NA
RCC_T6--4	chr19:49403983	C	NA	42	0	42	65.690	3.265	0	0	0	42	0	NUCB1	intronic	NA
RCC_T6--5	chr19:49403983	C	NA	32	0	32	63.812	8.866	0	0	0	32	0	NUCB1	intronic	NA
RCC_T6--6	chr19:49403983	C	NA	30	0	30	62.233	9.302	0	0	0	30	0	NUCB1	intronic	NA
RCC_T6--7	chr19:49403983	C	NA	41	0	41	65.317	3.496	0	0	0	41	0	NUCB1	intronic	NA
RCC_T6--8	chr19:49403983	C	NA	18	0	18	59.500	12.990	0	0	0	18	0	NUCB1	intronic	NA
RCC_T6--GL	chr19:49403983	C	NA	33	0	33	62.697	9.561	0	0	0	33	0	NUCB1	intronic	NA
RCC_T6--1	chr19:50149357	C	A	32	0.125	28	67.321	3.811	4	65.750	0.500	28	4	SCAF1	intronic	NA
RCC_T6--2	chr19:50149357	C	NA	35	0	35	67.086	4.853	0	0	0	35	0	SCAF1	intronic	NA
RCC_T6--3	chr19:50149357	C	NA	25	0	25	67.720	3.646	0	0	0	25	0	SCAF1	intronic	NA
RCC_T6--4	chr19:50149357	C	NA	37	0	37	65.135	6.750	0	0	0	37	0	SCAF1	intronic	NA
RCC_T6--5	chr19:50149357	C	NA	27	0	27	66.259	7.445	0	0	0	27	0	SCAF1	intronic	NA
RCC_T6--6	chr19:50149357	C	NA	35	0	35	65.857	6.774	0	0	0	35	0	SCAF1	intronic	NA
RCC_T6--7	chr19:50149357	C	NA	53	0	53	66.113	6.275	0	0	0	53	0	SCAF1	intronic	NA
RCC_T6--8	chr19:50149357	C	NA	41	0	41	66.634	6.644	0	0	0	41	0	SCAF1	intronic	NA
RCC_T6--GL	chr19:50149357	C	NA	35	0	35	66.286	5.085	0	0	0	35	0	SCAF1	intronic	NA
RCC_T6--1	chr19:5218693	C	NA	30	0	30	69.300	3.030	0	0	0	30	0	PTPRS	intronic	NA
RCC_T6--2	chr19:5218693	C	NA	30	0	30	68.233	3.936	0	0	0	30	0	PTPRS	intronic	NA
RCC_T6--3	chr19:5218693	C	NA	39	0	39	65.718	8.742	0	0	0	39	0	PTPRS	intronic	NA
RCC_T6--4	chr19:5218693	C	NA	24	0	24	66.833	7.911	0	0	0	24	0	PTPRS	intronic	NA
RCC_T6--5	chr19:5218693	C	NA	36	0	35	68.229	4.512	0	0	0	35	0	PTPRS	intronic	NA
RCC_T6--6	chr19:5218693	C	NA	28	0	28	66.393	7.295	0	0	0	28	0	PTPRS	intronic	NA
RCC_T6--7	chr19:5218693	C	A	28	0.143	24	67.833	5.338	4	68.000	3.464	24	4	PTPRS	intronic	NA
RCC_T6--8	chr19:5218693	C	NA	25	0	25	67.480	3.776	0	0	0	25	0	PTPRS	intronic	NA
RCC_T6--GL	chr19:5218693	C	NA	34	0	34	65.500	7.174	0	0	0	34	0	PTPRS	intronic	NA
RCC_T6--1	chr19:53091752	G	NA	27	0	27	57.111	12.377	0	0	0	27	0	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--2	chr19:53091752	G	A	29	0.103	26	55.000	10.889	3	46.000	17.321	26	3	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--3	chr19:53091752	G	A	27	0.037	25	58.080	9.853	1	45.000	0.000	25	1	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--4	chr19:53091752	G	A	26	0.154	22	56.364	11.475	4	43.250	8.098	22	4	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--5	chr19:53091752	G	A	27	0.074	25	58.880	9.501	2	37.000	0.000	25	2	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--6	chr19:53091752	G	NA	27	0	27	58.259	11.217	0	0	0	27	0	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--7	chr19:53091752	G	A	27	0.185	22	50.364	12.465	5	36.800	4.919	22	5	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--8	chr19:53091752	G	A	27	0.148	22	53.909	12.921	4	36.250	0.500	22	4	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--GL	chr19:53091752	G	NA	34	0	33	54.727	11.769	0	0	0	33	0	ZNF701(dist=1325),ZNF137P(dist=8185)	intergenic	NA
RCC_T6--1	chr19:54732956	T	A	47	0.191	38	67.395	4.813	9	67.778	3.701	38	9	LILRB3	intronic	NA
RCC_T6--2	chr19:54732956	T	A	58	0.069	54	69.167	3.161	4	70.500	1.732	54	4	LILRB3	intronic	NA
RCC_T6--3	chr19:54732956	T	A	70	0.129	61	66.475	7.224	9	61.889	14.269	61	9	LILRB3	intronic	NA
RCC_T6--4	chr19:54732956	T	A	71	0.042	68	67.765	5.085	3	68.333	3.512	68	3	LILRB3	intronic	NA
RCC_T6--5	chr19:54732956	T	A	66	0.167	55	68.600	3.101	11	67.636	5.025	55	11	LILRB3	intronic	NA
RCC_T6--6	chr19:54732956	T	A	55	0.345	36	66.250	5.484	19	67.316	5.110	36	19	LILRB3	intronic	NA
RCC_T6--7	chr19:54732956	T	NA	72	0	72	67.569	7.240	0	0	0	72	0	LILRB3	intronic	NA
RCC_T6--8	chr19:54732956	T	A	60	0.167	50	67.640	4.848	10	68.700	3.401	50	10	LILRB3	intronic	NA
RCC_T6--GL	chr19:54732956	T	NA	66	0	66	67.333	7.461	0	0	0	66	0	LILRB3	intronic	NA
RCC_T6--1	chr19:54783330	C	T	115	0.104	102	63.127	7.817	12	57.583	11.579	102	12	LILRB2	exonic	synonymous_SNV
RCC_T6--2	chr19:54783330	C	T	120	0.175	99	63.545	6.932	21	64.667	4.054	99	21	LILRB2	exonic	synonymous_SNV
RCC_T6--3	chr19:54783330	C	T	84	0.131	73	64.288	7.731	11	60.364	9.266	73	11	LILRB2	exonic	synonymous_SNV
RCC_T6--4	chr19:54783330	C	T	118	0.017	116	62.345	8.940	2	69.000	1.414	116	2	LILRB2	exonic	synonymous_SNV
RCC_T6--5	chr19:54783330	C	T	121	0.017	119	62.487	9.094	2	67.500	2.121	119	2	LILRB2	exonic	synonymous_SNV
RCC_T6--6	chr19:54783330	C	T	90	0.344	59	61.966	8.071	31	63.903	7.543	59	31	LILRB2	exonic	synonymous_SNV
RCC_T6--7	chr19:54783330	C	T	108	0.028	105	62.638	8.250	3	66.333	2.082	105	3	LILRB2	exonic	synonymous_SNV
RCC_T6--8	chr19:54783330	C	T	102	0.010	100	62.000	8.797	1	69.000	0.000	100	1	LILRB2	exonic	synonymous_SNV
RCC_T6--GL	chr19:54783330	C	NA	99	0	99	61.000	9.829	0	0	0	99	0	LILRB2	exonic	synonymous_SNV
RCC_T6--1	chr19:55543636	T	NA	36	0	36	67.306	3.413	0	0	0	36	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--2	chr19:55543636	T	C	56	0.018	55	67.182	3.261	1	33.000	0.000	55	1	GP6	exonic	nonsynonymous_SNV
RCC_T6--3	chr19:55543636	T	NA	58	0	58	64.310	9.587	0	0	0	58	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--4	chr19:55543636	T	NA	55	0	55	65.673	5.030	0	0	0	55	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--5	chr19:55543636	T	NA	57	0	57	65.632	8.121	0	0	0	57	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--6	chr19:55543636	T	NA	46	0	46	65.087	6.095	0	0	0	46	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--7	chr19:55543636	T	C	65	0.015	64	65.719	7.467	1	38.000	0.000	64	1	GP6	exonic	nonsynonymous_SNV
RCC_T6--8	chr19:55543636	T	C	45	0.111	40	65.375	7.438	5	60.600	12.075	40	5	GP6	exonic	nonsynonymous_SNV
RCC_T6--GL	chr19:55543636	T	NA	47	0	47	66.787	4.899	0	0	0	47	0	GP6	exonic	nonsynonymous_SNV
RCC_T6--1	chr19:56538564	G	NA	95	0	95	66.484	7.559	0	0	0	95	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--2	chr19:56538564	G	NA	116	0	116	67.672	4.967	0	0	0	116	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--3	chr19:56538564	G	C	105	0.010	104	65.875	6.029	1	33.000	0.000	104	1	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--4	chr19:56538564	G	NA	141	0	141	66.319	6.580	0	0	0	141	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--5	chr19:56538564	G	NA	115	0	115	67.878	4.719	0	0	0	115	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--6	chr19:56538564	G	C	96	0.156	81	66.506	6.699	15	68.333	3.638	81	15	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--7	chr19:56538564	G	NA	141	0	141	66.574	6.739	0	0	0	141	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--8	chr19:56538564	G	NA	109	0	109	66.936	7.029	0	0	0	109	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--GL	chr19:56538564	G	NA	101	0	101	66.416	5.518	0	0	0	101	0	NLRP5	exonic	nonsynonymous_SNV
RCC_T6--1	chr19:56832681	G	T	40	0.050	38	68.395	6.516	2	68.500	0.707	38	2	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--2	chr19:56832681	G	NA	42	0	42	68.548	3.697	0	0	0	42	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--3	chr19:56832681	G	NA	41	0	41	67.439	5.196	0	0	0	41	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--4	chr19:56832681	G	NA	28	0	28	66.929	5.206	0	0	0	28	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--5	chr19:56832681	G	T	32	0.125	28	66.750	7.555	4	65.500	0.577	28	4	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--6	chr19:56832681	G	NA	36	0	36	66.889	7.147	0	0	0	36	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--7	chr19:56832681	G	NA	33	0	33	67.818	6.095	0	0	0	33	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--8	chr19:56832681	G	NA	35	0	35	68.371	3.889	0	0	0	35	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--GL	chr19:56832681	G	NA	34	0	34	68.824	3.841	0	0	0	34	0	ZSCAN5A(dist=93022),ZNF542(dist=46787)	intergenic	NA
RCC_T6--1	chr19:629437	G	NA	92	0	92	69.250	2.938	0	0	0	92	0	POLRMT	intronic	NA
RCC_T6--2	chr19:629437	G	NA	102	0	102	68.461	4.507	0	0	0	102	0	POLRMT	intronic	NA
RCC_T6--3	chr19:629437	G	C	97	0.021	95	68.411	4.497	2	68.000	0.000	95	2	POLRMT	intronic	NA
RCC_T6--4	chr19:629437	G	C	75	0.027	73	68.151	4.386	2	71.500	0.707	73	2	POLRMT	intronic	NA
RCC_T6--5	chr19:629437	G	NA	94	0	94	68.372	4.745	0	0	0	94	0	POLRMT	intronic	NA
RCC_T6--6	chr19:629437	G	NA	96	0	96	67.219	5.431	0	0	0	96	0	POLRMT	intronic	NA
RCC_T6--7	chr19:629437	G	NA	74	0	74	67.095	5.768	0	0	0	74	0	POLRMT	intronic	NA
RCC_T6--8	chr19:629437	G	C	119	0.218	93	68.548	5.502	26	67.654	3.720	93	26	POLRMT	intronic	NA
RCC_T6--GL	chr19:629437	G	NA	98	0	98	68.735	3.628	0	0	0	98	0	POLRMT	intronic	NA
RCC_T6--1	chr19:6707847	T	C	37	0.108	33	62.242	8.303	4	61.500	5.196	33	4	C3	exonic	nonsynonymous_SNV
RCC_T6--2	chr19:6707847	T	NA	42	0	42	64.786	6.639	0	0	0	42	0	C3	exonic	nonsynonymous_SNV
RCC_T6--3	chr19:6707847	T	NA	33	0	33	62.545	10.533	0	0	0	33	0	C3	exonic	nonsynonymous_SNV
RCC_T6--4	chr19:6707847	T	NA	54	0	54	62.852	5.499	0	0	0	54	0	C3	exonic	nonsynonymous_SNV
RCC_T6--5	chr19:6707847	T	NA	51	0	51	62.078	11.650	0	0	0	51	0	C3	exonic	nonsynonymous_SNV
RCC_T6--6	chr19:6707847	T	NA	29	0	29	64.828	8.005	0	0	0	29	0	C3	exonic	nonsynonymous_SNV
RCC_T6--7	chr19:6707847	T	NA	64	0	64	63.609	7.829	0	0	0	64	0	C3	exonic	nonsynonymous_SNV
RCC_T6--8	chr19:6707847	T	NA	44	0	44	63.250	6.599	0	0	0	44	0	C3	exonic	nonsynonymous_SNV
RCC_T6--GL	chr19:6707847	T	NA	35	0	35	63.343	8.029	0	0	0	35	0	C3	exonic	nonsynonymous_SNV
RCC_T6--1	chr20:17622341	C	NA	37	0	37	66.486	9.212	0	0	0	37	0	RRBP1	intronic	NA
RCC_T6--2	chr20:17622341	C	NA	24	0	24	66.083	4.413	0	0	0	24	0	RRBP1	intronic	NA
RCC_T6--3	chr20:17622341	C	NA	31	0	31	63.903	8.773	0	0	0	31	0	RRBP1	intronic	NA
RCC_T6--4	chr20:17622341	C	T	31	0.032	30	68.033	3.419	1	65.000	0.000	30	1	RRBP1	intronic	NA
RCC_T6--5	chr20:17622341	C	NA	41	0	41	67.122	4.496	0	0	0	41	0	RRBP1	intronic	NA
RCC_T6--6	chr20:17622341	C	NA	30	0	30	64.333	11.046	0	0	0	30	0	RRBP1	intronic	NA
RCC_T6--7	chr20:17622341	C	T	31	0.129	27	67.852	4.167	4	57.250	16.174	27	4	RRBP1	intronic	NA
RCC_T6--8	chr20:17622341	C	NA	38	0	38	65.868	7.271	0	0	0	38	0	RRBP1	intronic	NA
RCC_T6--GL	chr20:17622341	C	NA	41	0	41	66.561	5.954	0	0	0	41	0	RRBP1	intronic	NA
RCC_T6--1	chr20:20066207	G	A	145	0.221	113	68.088	5.361	32	66.750	7.620	113	32	C20orf26	intronic	NA
RCC_T6--2	chr20:20066207	G	A	180	0.111	160	67.287	6.823	20	67.900	5.129	160	20	C20orf26	intronic	NA
RCC_T6--3	chr20:20066207	G	A	122	0.238	93	67.720	5.239	29	66.793	7.622	93	29	C20orf26	intronic	NA
RCC_T6--4	chr20:20066207	G	A	152	0.059	143	65.923	7.117	9	67.000	4.924	143	9	C20orf26	intronic	NA
RCC_T6--5	chr20:20066207	G	A	160	0.056	151	66.861	5.799	9	67.000	3.808	151	9	C20orf26	intronic	NA
RCC_T6--6	chr20:20066207	G	A	150	0.267	109	66.780	6.108	40	64.500	7.772	109	40	C20orf26	intronic	NA
RCC_T6--7	chr20:20066207	G	A	155	0.052	147	67.041	5.342	8	66.125	3.834	147	8	C20orf26	intronic	NA
RCC_T6--8	chr20:20066207	G	A	145	0.228	112	66.839	7.168	33	64.242	11.105	112	33	C20orf26	intronic	NA
RCC_T6--GL	chr20:20066207	G	NA	135	0	134	66.933	6.108	0	0	0	134	0	C20orf26	intronic	NA
RCC_T6--1	chr20:30525301	C	NA	38	0	38	67.053	6.547	0	0	0	38	0	TTLL9	exonic	synonymous_SNV
RCC_T6--2	chr20:30525301	C	NA	39	0	39	67.385	2.662	0	0	0	39	0	TTLL9	exonic	synonymous_SNV
RCC_T6--3	chr20:30525301	C	NA	31	0	31	65.871	9.573	0	0	0	31	0	TTLL9	exonic	synonymous_SNV
RCC_T6--4	chr20:30525301	C	NA	28	0	28	66.429	6.221	0	0	0	28	0	TTLL9	exonic	synonymous_SNV
RCC_T6--5	chr20:30525301	C	NA	42	0	42	66.833	5.682	0	0	0	42	0	TTLL9	exonic	synonymous_SNV
RCC_T6--6	chr20:30525301	C	NA	35	0	34	68.676	3.245	0	0	0	34	0	TTLL9	exonic	synonymous_SNV
RCC_T6--7	chr20:30525301	C	NA	46	0	46	67.022	3.152	0	0	0	46	0	TTLL9	exonic	synonymous_SNV
RCC_T6--8	chr20:30525301	C	T	32	0.125	28	66.643	5.079	4	65.250	2.062	28	4	TTLL9	exonic	synonymous_SNV
RCC_T6--GL	chr20:30525301	C	NA	34	0	34	67.265	5.578	0	0	0	34	0	TTLL9	exonic	synonymous_SNV
RCC_T6--1	chr20:4163054	C	A	32	0.125	28	64.250	7.255	4	65.250	0.500	28	4	SMOX	exonic	nonsynonymous_SNV
RCC_T6--2	chr20:4163054	C	NA	42	0	42	65.548	6.005	0	0	0	42	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--3	chr20:4163054	C	NA	31	0	31	65.161	3.012	0	0	0	31	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--4	chr20:4163054	C	NA	47	0	47	60.362	10.126	0	0	0	47	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--5	chr20:4163054	C	NA	31	0	30	65.933	6.802	0	0	0	30	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--6	chr20:4163054	C	NA	40	0	40	66.100	4.349	0	0	0	40	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--7	chr20:4163054	C	NA	35	0	35	64.514	6.993	0	0	0	35	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--8	chr20:4163054	C	NA	23	0	23	65.522	8.112	0	0	0	23	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--GL	chr20:4163054	C	NA	39	0	39	63.103	7.525	0	0	0	39	0	SMOX	exonic	nonsynonymous_SNV
RCC_T6--1	chr20:60966224	A	C	63	0.063	58	56.345	11.784	4	37.250	2.500	58	4	CABLES2	intronic	NA
RCC_T6--2	chr20:60966224	A	C	60	0.133	52	57.192	11.134	8	37.250	5.751	52	8	CABLES2	intronic	NA
RCC_T6--3	chr20:60966224	A	C	64	0.031	61	55.525	12.040	2	36.000	4.243	61	2	CABLES2	intronic	NA
RCC_T6--4	chr20:60966224	A	C	56	0.161	47	58.553	9.684	9	38.556	7.350	47	9	CABLES2	intronic	NA
RCC_T6--5	chr20:60966224	A	C	53	0.057	50	57.620	9.519	3	34.000	1.732	50	3	CABLES2	intronic	NA
RCC_T6--6	chr20:60966224	A	C	37	0.081	32	58.281	10.887	3	33.000	0.000	32	3	CABLES2	intronic	NA
RCC_T6--7	chr20:60966224	A	C	49	0.102	44	55.227	11.487	5	38.800	3.834	44	5	CABLES2	intronic	NA
RCC_T6--8	chr20:60966224	A	C	28	0.143	24	56.042	11.626	4	38.750	3.096	24	4	CABLES2	intronic	NA
RCC_T6--GL	chr20:60966224	A	NA	46	0	46	58.348	9.655	0	0	0	46	0	CABLES2	intronic	NA
RCC_T6--1	chr20:62340396	C	NA	45	0	45	66.289	5.375	0	0	0	45	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--2	chr20:62340396	C	NA	87	0	87	64.724	8.584	0	0	0	87	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--3	chr20:62340396	C	NA	61	0	61	65.459	5.208	0	0	0	61	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--4	chr20:62340396	C	NA	47	0	47	63.872	7.330	0	0	0	47	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--5	chr20:62340396	C	NA	36	0	36	66.333	4.085	0	0	0	36	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--6	chr20:62340396	C	NA	56	0	56	65.571	6.693	0	0	0	56	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--7	chr20:62340396	C	NA	44	0	44	65.955	4.377	0	0	0	44	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--8	chr20:62340396	C	T	35	0.114	31	65.323	7.748	4	65.750	2.630	31	4	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--GL	chr20:62340396	C	NA	34	0	34	65.588	5.223	0	0	0	34	0	ZGPAT	exonic	nonsynonymous_SNV
RCC_T6--1	chr21:22906779	T	NA	44	0	44	62.545	5.761	0	0	0	44	0	NCAM2	intronic	NA
RCC_T6--2	chr21:22906779	T	C	71	0.014	69	62.203	6.033	1	33.000	0.000	69	1	NCAM2	intronic	NA
RCC_T6--3	chr21:22906779	T	C	47	0.021	46	62.196	6.047	1	41.000	0.000	46	1	NCAM2	intronic	NA
RCC_T6--4	chr21:22906779	T	NA	38	0	36	59.111	9.064	0	0	0	36	0	NCAM2	intronic	NA
RCC_T6--5	chr21:22906779	T	C	59	0.017	58	59.500	9.202	1	41.000	0.000	58	1	NCAM2	intronic	NA
RCC_T6--6	chr21:22906779	T	C	71	0.239	53	60.057	7.841	17	66.588	9.193	53	17	NCAM2	intronic	NA
RCC_T6--7	chr21:22906779	T	NA	38	0	37	59.027	8.662	0	0	0	37	0	NCAM2	intronic	NA
RCC_T6--8	chr21:22906779	T	NA	81	0	78	60.474	7.603	0	0	0	78	0	NCAM2	intronic	NA
RCC_T6--GL	chr21:22906779	T	NA	57	0	57	58.684	8.802	0	0	0	57	0	NCAM2	intronic	NA
RCC_T6--1	chr2:130893698	G	NA	30	0	29	67.000	5.477	0	0	0	29	0	MED15P9	ncRNA_intronic	NA
RCC_T6--2	chr2:130893698	G	NA	42	0	42	66.024	5.524	0	0	0	42	0	MED15P9	ncRNA_intronic	NA
RCC_T6--3	chr2:130893698	G	NA	24	0	24	67.500	4.404	0	0	0	24	0	MED15P9	ncRNA_intronic	NA
RCC_T6--4	chr2:130893698	G	NA	32	0	31	65.000	6.723	0	0	0	31	0	MED15P9	ncRNA_intronic	NA
RCC_T6--5	chr2:130893698	G	NA	38	0	37	64.054	5.666	0	0	0	37	0	MED15P9	ncRNA_intronic	NA
RCC_T6--6	chr2:130893698	G	NA	24	0	24	63.625	11.119	0	0	0	24	0	MED15P9	ncRNA_intronic	NA
RCC_T6--7	chr2:130893698	G	NA	36	0	36	65.389	5.852	0	0	0	36	0	MED15P9	ncRNA_intronic	NA
RCC_T6--8	chr2:130893698	G	T	32	0.125	28	63.071	8.146	4	65.000	2.828	28	4	MED15P9	ncRNA_intronic	NA
RCC_T6--GL	chr2:130893698	G	NA	39	0	39	63.744	7.542	0	0	0	39	0	MED15P9	ncRNA_intronic	NA
RCC_T6--1	chr21:33869153	G	NA	37	0	37	67.514	5.491	0	0	0	37	0	EVA1C	intronic	NA
RCC_T6--2	chr21:33869153	G	NA	48	0	48	67.708	4.439	0	0	0	48	0	EVA1C	intronic	NA
RCC_T6--3	chr21:33869153	G	NA	36	0	36	65.722	6.687	0	0	0	36	0	EVA1C	intronic	NA
RCC_T6--4	chr21:33869153	G	NA	34	0	34	68.029	3.927	0	0	0	34	0	EVA1C	intronic	NA
RCC_T6--5	chr21:33869153	G	NA	50	0	50	66.640	7.920	0	0	0	50	0	EVA1C	intronic	NA
RCC_T6--6	chr21:33869153	G	NA	36	0	36	67.667	5.467	0	0	0	36	0	EVA1C	intronic	NA
RCC_T6--7	chr21:33869153	G	NA	33	0	33	66.545	7.164	0	0	0	33	0	EVA1C	intronic	NA
RCC_T6--8	chr21:33869153	G	T	33	0.121	29	66.000	9.809	4	67.250	0.957	29	4	EVA1C	intronic	NA
RCC_T6--GL	chr21:33869153	G	NA	35	0	35	66.886	6.876	0	0	0	35	0	EVA1C	intronic	NA
RCC_T6--1	chr2:136620395	G	NA	22	0	22	66.455	8.916	0	0	0	22	0	MCM6	intronic	NA
RCC_T6--2	chr2:136620395	G	T	34	0.118	30	69.700	3.659	4	68.250	3.775	30	4	MCM6	intronic	NA
RCC_T6--3	chr2:136620395	G	NA	20	0	20	68.650	3.760	0	0	0	20	0	MCM6	intronic	NA
RCC_T6--4	chr2:136620395	G	NA	22	0	22	67.318	4.874	0	0	0	22	0	MCM6	intronic	NA
RCC_T6--5	chr2:136620395	G	NA	44	0	44	67.318	4.507	0	0	0	44	0	MCM6	intronic	NA
RCC_T6--6	chr2:136620395	G	NA	41	0	41	66.878	5.845	0	0	0	41	0	MCM6	intronic	NA
RCC_T6--7	chr2:136620395	G	NA	35	0	35	69.343	5.029	0	0	0	35	0	MCM6	intronic	NA
RCC_T6--8	chr2:136620395	G	NA	34	0	34	66.912	7.469	0	0	0	34	0	MCM6	intronic	NA
RCC_T6--GL	chr2:136620395	G	NA	46	0	46	68.478	4.299	0	0	0	46	0	MCM6	intronic	NA
RCC_T6--1	chr2:15744485	T	NA	67	0	41	68.171	6.257	0	0	0	41	0	DDX1	intronic	NA
RCC_T6--2	chr2:15744485	T	NA	66	0	35	69.143	3.353	0	0	0	35	0	DDX1	intronic	NA
RCC_T6--3	chr2:15744485	T	NA	64	0	40	68.950	3.644	0	0	0	40	0	DDX1	intronic	NA
RCC_T6--4	chr2:15744485	T	C	54	0.037	26	69.692	2.168	2	56.000	12.728	26	2	DDX1	intronic	NA
RCC_T6--5	chr2:15744485	T	C	62	0.145	25	69.960	3.576	9	64.000	1.500	25	9	DDX1	intronic	NA
RCC_T6--6	chr2:15744485	T	NA	62	0	37	68.892	4.383	0	0	0	37	0	DDX1	intronic	NA
RCC_T6--7	chr2:15744485	T	C	39	0.051	20	69.900	2.360	2	65.000	0.000	20	2	DDX1	intronic	NA
RCC_T6--8	chr2:15744485	T	C	49	0.041	24	69.208	4.699	2	65.000	0.000	24	2	DDX1	intronic	NA
RCC_T6--GL	chr2:15744485	T	NA	69	0	41	68.488	3.606	0	0	0	41	0	DDX1	intronic	NA
RCC_T6--1	chr2:15768844	C	NA	101	0	101	67.990	5.264	0	0	0	101	0	DDX1	intronic	NA
RCC_T6--2	chr2:15768844	C	NA	136	0	135	68.200	3.801	0	0	0	135	0	DDX1	intronic	NA
RCC_T6--3	chr2:15768844	C	NA	117	0	117	66.983	5.863	0	0	0	117	0	DDX1	intronic	NA
RCC_T6--4	chr2:15768844	C	NA	70	0	70	67.886	4.729	0	0	0	70	0	DDX1	intronic	NA
RCC_T6--5	chr2:15768844	C	NA	114	0	114	67.193	6.476	0	0	0	114	0	DDX1	intronic	NA
RCC_T6--6	chr2:15768844	C	T	116	0.155	97	66.402	7.972	18	65.611	6.446	97	18	DDX1	intronic	NA
RCC_T6--7	chr2:15768844	C	NA	73	0	71	67.465	5.549	0	0	0	71	0	DDX1	intronic	NA
RCC_T6--8	chr2:15768844	C	T	122	0.008	120	67.958	5.003	1	69.000	0.000	120	1	DDX1	intronic	NA
RCC_T6--GL	chr2:15768844	C	NA	91	0	90	66.378	6.834	0	0	0	90	0	DDX1	intronic	NA
RCC_T6--1	chr2:175268948	A	C	127	0.126	111	67.856	4.711	16	68.750	3.821	111	16	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--2	chr2:175268948	A	C	164	0.152	139	67.626	5.670	25	69.360	2.628	139	25	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--3	chr2:175268948	A	C	118	0.102	106	67.349	5.009	12	65.500	4.681	106	12	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--4	chr2:175268948	A	C	120	0.033	116	67.940	3.994	4	66.500	2.517	116	4	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--5	chr2:175268948	A	C	119	0.076	109	67.303	5.465	9	67.444	4.902	109	9	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--6	chr2:175268948	A	C	140	0.236	107	67.495	5.750	33	65.394	10.090	107	33	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--7	chr2:175268948	A	C	143	0.056	135	68.007	5.571	8	69.250	3.327	135	8	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--8	chr2:175268948	A	C	185	0.200	148	67.980	4.684	37	69.189	2.171	148	37	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--GL	chr2:175268948	A	NA	107	0	107	67.449	4.922	0	0	0	107	0	SCRN3	exonic	nonsynonymous_SNV
RCC_T6--1	chr2:189861055	T	NA	39	0	39	65.718	5.434	0	0	0	39	0	COL3A1	intronic	NA
RCC_T6--2	chr2:189861055	T	C	43	0.093	39	65.487	7.514	4	42.000	15.449	39	4	COL3A1	intronic	NA
RCC_T6--3	chr2:189861055	T	C	34	0.029	33	65.030	7.380	1	38.000	0.000	33	1	COL3A1	intronic	NA
RCC_T6--4	chr2:189861055	T	C	25	0.160	21	65.619	7.453	4	62.250	1.708	21	4	COL3A1	intronic	NA
RCC_T6--5	chr2:189861055	T	C	37	0.054	35	65.257	7.640	2	52.500	21.920	35	2	COL3A1	intronic	NA
RCC_T6--6	chr2:189861055	T	C	51	0.020	50	65.720	5.693	1	44.000	0.000	50	1	COL3A1	intronic	NA
RCC_T6--7	chr2:189861055	T	NA	22	0	22	65.409	5.861	0	0	0	22	0	COL3A1	intronic	NA
RCC_T6--8	chr2:189861055	T	C	50	0.060	46	64.978	7.179	3	53.333	17.673	46	3	COL3A1	intronic	NA
RCC_T6--GL	chr2:189861055	T	NA	36	0	36	63.917	8.480	0	0	0	36	0	COL3A1	intronic	NA
RCC_T6--1	chr22:24106572	G	A	33	0.121	29	67.690	4.124	4	64.750	4.573	29	4	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--2	chr22:24106572	G	NA	47	0	47	66.979	4.245	0	0	0	47	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--3	chr22:24106572	G	NA	31	0	31	65.710	5.362	0	0	0	31	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--4	chr22:24106572	G	NA	35	0	35	64.657	7.635	0	0	0	35	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--5	chr22:24106572	G	NA	32	0	32	65.938	6.956	0	0	0	32	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--6	chr22:24106572	G	NA	31	0	31	67.290	7.272	0	0	0	31	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--7	chr22:24106572	G	NA	45	0	45	66.556	5.003	0	0	0	45	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--8	chr22:24106572	G	NA	37	0	37	67.000	4.595	0	0	0	37	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--GL	chr22:24106572	G	NA	33	0	33	65.424	7.370	0	0	0	33	0	C22orf15	exonic	nonsynonymous_SNV
RCC_T6--1	chr22:24376443	C	NA	29	0	29	64.655	8.524	0	0	0	29	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--2	chr22:24376443	C	A	35	0.114	31	65.290	7.180	4	60.500	12.124	31	4	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--3	chr22:24376443	C	A	49	0.020	48	63.021	10.548	1	33.000	0.000	48	1	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--4	chr22:24376443	C	NA	56	0	55	65.527	5.329	0	0	0	55	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--5	chr22:24376443	C	NA	33	0	33	65.424	9.169	0	0	0	33	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--6	chr22:24376443	C	NA	33	0	33	67.788	5.073	0	0	0	33	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--7	chr22:24376443	C	NA	44	0	44	66.841	4.029	0	0	0	44	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--8	chr22:24376443	C	NA	52	0	52	65.154	7.204	0	0	0	52	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr22:24376443	C	NA	33	0	33	66.576	6.519	0	0	0	33	0	GSTT1	exonic	nonsynonymous_SNV
RCC_T6--1	chr22:24487509	C	A	40	0.050	38	57.605	10.149	2	39.500	0.707	38	2	CABIN1	intronic	NA
RCC_T6--2	chr22:24487509	C	A	29	0.034	28	56.321	12.899	1	56.000	0.000	28	1	CABIN1	intronic	NA
RCC_T6--3	chr22:24487509	C	A	39	0.179	32	58.969	9.617	7	40.000	1.155	32	7	CABIN1	intronic	NA
RCC_T6--4	chr22:24487509	C	A	45	0.044	42	54.714	10.899	2	47.500	13.435	42	2	CABIN1	intronic	NA
RCC_T6--5	chr22:24487509	C	A	33	0.030	32	58.906	9.683	1	39.000	0.000	32	1	CABIN1	intronic	NA
RCC_T6--6	chr22:24487509	C	A	36	0.167	30	54.833	9.788	6	42.500	8.643	30	6	CABIN1	intronic	NA
RCC_T6--7	chr22:24487509	C	A	44	0.091	39	55.795	9.200	4	39.250	0.500	39	4	CABIN1	intronic	NA
RCC_T6--8	chr22:24487509	C	A	48	0.062	45	59.067	10.528	3	42.000	10.149	45	3	CABIN1	intronic	NA
RCC_T6--GL	chr22:24487509	C	NA	45	0	44	56.114	10.533	0	0	0	44	0	CABIN1	intronic	NA
RCC_T6--1	chr22:25251216	G	A	34	0.118	30	66.133	4.249	4	66.500	0.577	30	4	SGSM1	intronic	NA
RCC_T6--2	chr22:25251216	G	NA	27	0	27	66.185	4.039	0	0	0	27	0	SGSM1	intronic	NA
RCC_T6--3	chr22:25251216	G	NA	20	0	20	65.000	8.189	0	0	0	20	0	SGSM1	intronic	NA
RCC_T6--4	chr22:25251216	G	NA	31	0	31	64.226	4.911	0	0	0	31	0	SGSM1	intronic	NA
RCC_T6--5	chr22:25251216	G	NA	28	0	28	65.821	5.361	0	0	0	28	0	SGSM1	intronic	NA
RCC_T6--6	chr22:25251216	G	NA	17	0	16	64.125	9.062	0	0	0	16	0	SGSM1	intronic	NA
RCC_T6--7	chr22:25251216	G	NA	23	0	23	64.130	8.900	0	0	0	23	0	SGSM1	intronic	NA
RCC_T6--8	chr22:25251216	G	NA	23	0	23	65.522	7.959	0	0	0	23	0	SGSM1	intronic	NA
RCC_T6--GL	chr22:25251216	G	NA	37	0	37	66.432	4.525	0	0	0	37	0	SGSM1	intronic	NA
RCC_T6--1	chr2:227979234	T	A	96	0.188	78	68.487	4.413	18	68.833	2.407	78	18	COL4A4	intronic	NA
RCC_T6--2	chr2:227979234	T	A	126	0.079	116	68.629	4.072	10	67.500	5.297	116	10	COL4A4	intronic	NA
RCC_T6--3	chr2:227979234	T	A	96	0.167	80	66.662	5.746	16	64.938	6.913	80	16	COL4A4	intronic	NA
RCC_T6--4	chr2:227979234	T	NA	93	0	93	67.946	5.245	0	0	0	93	0	COL4A4	intronic	NA
RCC_T6--5	chr2:227979234	T	A	105	0.057	99	67.091	6.214	6	65.333	6.593	99	6	COL4A4	intronic	NA
RCC_T6--6	chr2:227979234	T	A	90	0.244	68	67.588	6.213	22	63.500	6.131	68	22	COL4A4	intronic	NA
RCC_T6--7	chr2:227979234	T	A	90	0.056	85	68.565	4.385	5	63.000	14.714	85	5	COL4A4	intronic	NA
RCC_T6--8	chr2:227979234	T	NA	98	0	98	67.745	6.153	0	0	0	98	0	COL4A4	intronic	NA
RCC_T6--GL	chr2:227979234	T	NA	80	0	80	67.950	5.079	0	0	0	80	0	COL4A4	intronic	NA
RCC_T6--1	chr2:230271926	C	NA	204	0	204	67.618	5.114	0	0	0	204	0	DNER	intronic	NA
RCC_T6--2	chr2:230271926	C	NA	162	0	162	67.352	4.988	0	0	0	162	0	DNER	intronic	NA
RCC_T6--3	chr2:230271926	C	G	178	0.022	174	65.489	7.084	4	65.500	4.509	174	4	DNER	intronic	NA
RCC_T6--4	chr2:230271926	C	G	180	0.056	170	66.612	6.221	10	66.000	6.164	170	10	DNER	intronic	NA
RCC_T6--5	chr2:230271926	C	NA	180	0	179	67.430	4.482	0	0	0	179	0	DNER	intronic	NA
RCC_T6--6	chr2:230271926	C	NA	167	0	167	65.784	6.920	0	0	0	167	0	DNER	intronic	NA
RCC_T6--7	chr2:230271926	C	NA	220	0	220	66.973	6.401	0	0	0	220	0	DNER	intronic	NA
RCC_T6--8	chr2:230271926	C	G	166	0.157	140	67.550	3.351	26	66.269	7.411	140	26	DNER	intronic	NA
RCC_T6--GL	chr2:230271926	C	NA	142	0	142	65.838	7.473	0	0	0	142	0	DNER	intronic	NA
RCC_T6--1	chr22:39138426	G	NA	27	0	25	54.200	11.626	0	0	0	25	0	SUN2	exonic	synonymous_SNV
RCC_T6--2	chr22:39138426	G	T	31	0.032	30	55.633	10.387	1	41.000	0.000	30	1	SUN2	exonic	synonymous_SNV
RCC_T6--3	chr22:39138426	G	NA	24	0	22	53.864	12.135	0	0	0	22	0	SUN2	exonic	synonymous_SNV
RCC_T6--4	chr22:39138426	G	T	38	0.026	36	51.917	12.756	1	38.000	0.000	36	1	SUN2	exonic	synonymous_SNV
RCC_T6--5	chr22:39138426	G	T	23	0.043	21	52.714	12.228	1	57.000	0.000	21	1	SUN2	exonic	synonymous_SNV
RCC_T6--6	chr22:39138426	G	NA	22	0	21	60.190	7.865	0	0	0	21	0	SUN2	exonic	synonymous_SNV
RCC_T6--7	chr22:39138426	G	T	37	0.162	31	52.742	11.750	6	42.167	7.935	31	6	SUN2	exonic	synonymous_SNV
RCC_T6--8	chr22:39138426	G	T	35	0.057	33	57.333	9.726	2	39.500	2.121	33	2	SUN2	exonic	synonymous_SNV
RCC_T6--GL	chr22:39138426	G	NA	36	0	35	53.943	11.727	0	0	0	35	0	SUN2	exonic	synonymous_SNV
RCC_T6--1	chr2:24262433	A	NA	30	0	30	69.167	3.715	0	0	0	30	0	C2orf44	intronic	NA
RCC_T6--2	chr2:24262433	A	NA	35	0	35	68.429	3.441	0	0	0	35	0	C2orf44	intronic	NA
RCC_T6--3	chr2:24262433	A	NA	31	0	31	67.935	4.640	0	0	0	31	0	C2orf44	intronic	NA
RCC_T6--4	chr2:24262433	A	NA	24	0	24	69.875	2.309	0	0	0	24	0	C2orf44	intronic	NA
RCC_T6--5	chr2:24262433	A	NA	24	0	24	66.833	5.647	0	0	0	24	0	C2orf44	intronic	NA
RCC_T6--6	chr2:24262433	A	NA	22	0	22	66.318	9.291	0	0	0	22	0	C2orf44	intronic	NA
RCC_T6--7	chr2:24262433	A	T	29	0.138	25	66.880	7.253	4	71.000	1.155	25	4	C2orf44	intronic	NA
RCC_T6--8	chr2:24262433	A	NA	35	0	35	67.800	6.356	0	0	0	35	0	C2orf44	intronic	NA
RCC_T6--GL	chr2:24262433	A	NA	37	0	37	67.378	4.639	0	0	0	37	0	C2orf44	intronic	NA
RCC_T6--1	chr2:73679901	G	NA	95	0	95	69.453	2.828	0	0	0	95	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--2	chr2:73679901	G	NA	132	0	132	69.432	4.261	0	0	0	132	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--3	chr2:73679901	G	A	96	0.042	91	67.967	6.127	4	66.750	7.932	91	4	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--4	chr2:73679901	G	A	112	0.054	106	68.840	4.515	6	68.667	3.077	106	6	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--5	chr2:73679901	G	NA	143	0	143	69.042	3.986	0	0	0	143	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--6	chr2:73679901	G	NA	114	0	114	68.096	5.472	0	0	0	114	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--7	chr2:73679901	G	NA	122	0	122	68.566	4.585	0	0	0	122	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--8	chr2:73679901	G	A	117	0.179	96	68.760	5.836	21	70.333	1.853	96	21	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr2:73679901	G	NA	99	0	99	68.202	4.324	0	0	0	99	0	ALMS1	exonic	nonsynonymous_SNV
RCC_T6--1	chr2:74154098	A	NA	27	0	27	64.630	8.233	0	0	0	27	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--2	chr2:74154098	A	G	58	0.017	57	65.439	5.577	1	41.000	0.000	57	1	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--3	chr2:74154098	A	NA	41	0	41	65.073	5.368	0	0	0	41	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--4	chr2:74154098	A	NA	44	0	44	64.159	7.038	0	0	0	44	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--5	chr2:74154098	A	G	34	0.118	30	66.100	7.260	4	61.250	5.123	30	4	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--6	chr2:74154098	A	NA	38	0	37	67.000	4.308	0	0	0	37	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--7	chr2:74154098	A	NA	56	0	56	66.125	5.401	0	0	0	56	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--8	chr2:74154098	A	NA	46	0	46	64.457	7.089	0	0	0	46	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--GL	chr2:74154098	A	NA	36	0	36	62.583	8.129	0	0	0	36	0	DGUOK	exonic	nonsynonymous_SNV
RCC_T6--1	chr2:75108787	C	NA	37	0	37	69.081	3.058	0	0	0	37	0	HK2	intronic	NA
RCC_T6--2	chr2:75108787	C	NA	30	0	30	68.133	3.884	0	0	0	30	0	HK2	intronic	NA
RCC_T6--3	chr2:75108787	C	NA	40	0	40	66.400	7.649	0	0	0	40	0	HK2	intronic	NA
RCC_T6--4	chr2:75108787	C	NA	35	0	35	66.971	6.551	0	0	0	35	0	HK2	intronic	NA
RCC_T6--5	chr2:75108787	C	A	42	0.119	37	68.054	6.675	5	65.000	5.701	37	5	HK2	intronic	NA
RCC_T6--6	chr2:75108787	C	NA	34	0	34	68.853	3.313	0	0	0	34	0	HK2	intronic	NA
RCC_T6--7	chr2:75108787	C	NA	35	0	35	68.943	2.754	0	0	0	35	0	HK2	intronic	NA
RCC_T6--8	chr2:75108787	C	NA	38	0	38	66.368	6.748	0	0	0	38	0	HK2	intronic	NA
RCC_T6--GL	chr2:75108787	C	NA	41	0	41	66.488	5.129	0	0	0	41	0	HK2	intronic	NA
RCC_T6--1	chr2:86292470	G	NA	144	0	144	66.833	4.985	0	0	0	144	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--2	chr2:86292470	G	A	156	0.109	139	67.194	5.053	17	68.882	2.913	139	17	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--3	chr2:86292470	G	A	136	0.176	112	65.509	8.103	24	66.750	4.406	112	24	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--4	chr2:86292470	G	A	153	0.007	152	66.224	6.335	1	65.000	0.000	152	1	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--5	chr2:86292470	G	NA	141	0	141	66.816	5.168	0	0	0	141	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--6	chr2:86292470	G	NA	130	0	129	66.310	6.277	0	0	0	129	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--7	chr2:86292470	G	NA	135	0	135	66.533	6.034	0	0	0	135	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--8	chr2:86292470	G	NA	147	0	147	66.517	6.358	0	0	0	147	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--GL	chr2:86292470	G	NA	132	0	131	65.435	6.469	0	0	0	131	0	POLR1A	exonic	nonsynonymous_SNV
RCC_T6--1	chr2:87015701	A	NA	37	0	37	66.595	9.215	0	0	0	37	0	CD8A	intronic	NA
RCC_T6--2	chr2:87015701	A	NA	34	0	34	68.706	3.030	0	0	0	34	0	CD8A	intronic	NA
RCC_T6--3	chr2:87015701	A	NA	23	0	23	65.435	10.313	0	0	0	23	0	CD8A	intronic	NA
RCC_T6--4	chr2:87015701	A	NA	36	0	36	67.889	3.214	0	0	0	36	0	CD8A	intronic	NA
RCC_T6--5	chr2:87015701	A	NA	33	0	33	67.121	7.436	0	0	0	33	0	CD8A	intronic	NA
RCC_T6--6	chr2:87015701	A	NA	25	0	25	66.080	6.879	0	0	0	25	0	CD8A	intronic	NA
RCC_T6--7	chr2:87015701	A	G	36	0.111	32	66.781	3.696	4	65.000	1.414	32	4	CD8A	intronic	NA
RCC_T6--8	chr2:87015701	A	NA	33	0	33	68.394	3.648	0	0	0	33	0	CD8A	intronic	NA
RCC_T6--GL	chr2:87015701	A	NA	40	0	40	66.900	4.645	0	0	0	40	0	CD8A	intronic	NA
RCC_T6--1	chr2:97365500	G	T	115	0.200	92	66.217	6.083	23	63.739	8.646	92	23	FER1L5	intronic	NA
RCC_T6--2	chr2:97365500	G	T	125	0.192	101	67.069	6.000	24	67.708	4.832	101	24	FER1L5	intronic	NA
RCC_T6--3	chr2:97365500	G	T	124	0.153	105	64.743	8.754	19	63.421	8.030	105	19	FER1L5	intronic	NA
RCC_T6--4	chr2:97365500	G	T	115	0.087	105	64.562	8.799	10	68.500	5.778	105	10	FER1L5	intronic	NA
RCC_T6--5	chr2:97365500	G	T	148	0.088	135	65.444	8.296	13	67.615	3.572	135	13	FER1L5	intronic	NA
RCC_T6--6	chr2:97365500	G	T	123	0.293	86	65.733	8.174	36	64.778	10.274	86	36	FER1L5	intronic	NA
RCC_T6--7	chr2:97365500	G	T	148	0.027	143	66.399	6.195	4	68.750	5.252	143	4	FER1L5	intronic	NA
RCC_T6--8	chr2:97365500	G	T	150	0.227	116	66.293	6.351	34	65.559	8.313	116	34	FER1L5	intronic	NA
RCC_T6--GL	chr2:97365500	G	NA	116	0	116	66.569	6.264	0	0	0	116	0	FER1L5	intronic	NA
RCC_T6--1	chr3:100387927	T	NA	100	0	100	66.950	5.894	0	0	0	100	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:100387927	T	C	137	0.007	136	68.088	5.253	1	37.000	0.000	136	1	GPR128	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:100387927	T	NA	112	0	112	66.848	6.041	0	0	0	112	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:100387927	T	NA	107	0	106	67.896	5.356	0	0	0	106	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:100387927	T	NA	97	0	97	67.474	3.919	0	0	0	97	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:100387927	T	C	106	0.123	93	66.763	6.405	13	66.077	9.447	93	13	GPR128	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:100387927	T	NA	111	0	111	67.441	6.076	0	0	0	111	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:100387927	T	NA	126	0	126	67.087	5.617	0	0	0	126	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:100387927	T	NA	110	0	110	67.409	5.880	0	0	0	110	0	GPR128	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:127800235	A	NA	44	0	44	63.727	9.973	0	0	0	44	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:127800235	A	NA	39	0	39	67.436	6.851	0	0	0	39	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:127800235	A	NA	54	0	54	64.019	10.046	0	0	0	54	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:127800235	A	NA	44	0	44	65.273	8.368	0	0	0	44	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:127800235	A	NA	44	0	44	65.636	6.423	0	0	0	44	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:127800235	A	NA	55	0	55	63.764	9.574	0	0	0	55	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:127800235	A	NA	52	0	52	64.481	10.141	0	0	0	52	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:127800235	A	T	33	0.121	29	66.172	6.387	4	64.250	6.702	29	4	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:127800235	A	NA	35	0	35	64.743	5.987	0	0	0	35	0	RUVBL1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:14518638	C	NA	37	0	37	68.243	3.562	0	0	0	37	0	SLC6A6	intronic	NA
RCC_T6--2	chr3:14518638	C	NA	45	0	45	67.244	5.796	0	0	0	45	0	SLC6A6	intronic	NA
RCC_T6--3	chr3:14518638	C	NA	37	0	37	64.595	10.343	0	0	0	37	0	SLC6A6	intronic	NA
RCC_T6--4	chr3:14518638	C	NA	25	0	25	65.480	8.058	0	0	0	25	0	SLC6A6	intronic	NA
RCC_T6--5	chr3:14518638	C	NA	31	0	31	68.581	3.481	0	0	0	31	0	SLC6A6	intronic	NA
RCC_T6--6	chr3:14518638	C	NA	25	0	25	64.360	7.745	0	0	0	25	0	SLC6A6	intronic	NA
RCC_T6--7	chr3:14518638	C	NA	54	0	54	67.833	4.277	0	0	0	54	0	SLC6A6	intronic	NA
RCC_T6--8	chr3:14518638	C	A	41	0.122	36	67.389	4.142	5	52.600	12.857	36	5	SLC6A6	intronic	NA
RCC_T6--GL	chr3:14518638	C	NA	38	0	38	64.658	9.133	0	0	0	38	0	SLC6A6	intronic	NA
RCC_T6--1	chr3:14860543	T	C	25	0.160	21	65.238	4.721	4	66.000	0.000	21	4	FGD5	UTR5	NA
RCC_T6--2	chr3:14860543	T	NA	49	0	49	66.796	4.188	0	0	0	49	0	FGD5	UTR5	NA
RCC_T6--3	chr3:14860543	T	NA	28	0	28	64.607	8.116	0	0	0	28	0	FGD5	UTR5	NA
RCC_T6--4	chr3:14860543	T	NA	35	0	35	63.971	8.435	0	0	0	35	0	FGD5	UTR5	NA
RCC_T6--5	chr3:14860543	T	NA	47	0	47	67.191	5.586	0	0	0	47	0	FGD5	UTR5	NA
RCC_T6--6	chr3:14860543	T	NA	27	0	27	66.593	4.534	0	0	0	27	0	FGD5	UTR5	NA
RCC_T6--7	chr3:14860543	T	NA	49	0	49	64.592	5.916	0	0	0	49	0	FGD5	UTR5	NA
RCC_T6--8	chr3:14860543	T	NA	33	0	31	62.387	9.419	0	0	0	31	0	FGD5	UTR5	NA
RCC_T6--GL	chr3:14860543	T	NA	36	0	36	63.389	7.400	0	0	0	36	0	FGD5	UTR5	NA
RCC_T6--1	chr3:149042609	C	NA	39	0	39	67.308	6.105	0	0	0	39	0	TM4SF18	intronic	NA
RCC_T6--2	chr3:149042609	C	NA	35	0	35	67.200	4.886	0	0	0	35	0	TM4SF18	intronic	NA
RCC_T6--3	chr3:149042609	C	NA	52	0	52	66.442	7.317	0	0	0	52	0	TM4SF18	intronic	NA
RCC_T6--4	chr3:149042609	C	NA	35	0	35	68.057	3.481	0	0	0	35	0	TM4SF18	intronic	NA
RCC_T6--5	chr3:149042609	C	NA	36	0	36	67.389	4.537	0	0	0	36	0	TM4SF18	intronic	NA
RCC_T6--6	chr3:149042609	C	NA	49	0	49	68.449	3.035	0	0	0	49	0	TM4SF18	intronic	NA
RCC_T6--7	chr3:149042609	C	A	27	0.148	23	66.261	4.663	4	66.750	4.717	23	4	TM4SF18	intronic	NA
RCC_T6--8	chr3:149042609	C	NA	31	0	31	68.097	3.995	0	0	0	31	0	TM4SF18	intronic	NA
RCC_T6--GL	chr3:149042609	C	NA	41	0	41	68.049	4.062	0	0	0	41	0	TM4SF18	intronic	NA
RCC_T6--1	chr3:153909226	T	A	292	0.171	242	68.393	4.154	50	68.100	4.225	242	50	ARHGEF26	intronic	NA
RCC_T6--2	chr3:153909226	T	A	346	0.090	315	68.708	4.180	31	67.161	5.267	315	31	ARHGEF26	intronic	NA
RCC_T6--3	chr3:153909226	T	A	344	0.084	315	66.851	6.675	29	67.310	4.327	315	29	ARHGEF26	intronic	NA
RCC_T6--4	chr3:153909226	T	A	272	0.011	268	67.638	5.521	3	67.333	4.041	268	3	ARHGEF26	intronic	NA
RCC_T6--5	chr3:153909226	T	NA	293	0	292	68.041	5.306	0	0	0	292	0	ARHGEF26	intronic	NA
RCC_T6--6	chr3:153909226	T	NA	324	0	324	66.460	7.227	0	0	0	324	0	ARHGEF26	intronic	NA
RCC_T6--7	chr3:153909226	T	NA	293	0	293	68.034	5.721	0	0	0	293	0	ARHGEF26	intronic	NA
RCC_T6--8	chr3:153909226	T	NA	280	0	280	67.821	5.449	0	0	0	280	0	ARHGEF26	intronic	NA
RCC_T6--GL	chr3:153909226	T	NA	255	0	255	67.549	6.092	0	0	0	255	0	ARHGEF26	intronic	NA
RCC_T6--1	chr3:154890512	C	T	34	0.029	33	53.848	11.306	1	66.000	0.000	33	1	MME	intronic	NA
RCC_T6--2	chr3:154890512	C	T	37	0.054	34	52.912	11.046	2	43.000	14.142	34	2	MME	intronic	NA
RCC_T6--3	chr3:154890512	C	NA	23	0	21	53.667	11.914	0	0	0	21	0	MME	intronic	NA
RCC_T6--4	chr3:154890512	C	T	19	0.263	14	51.643	11.507	5	41.600	15.947	14	5	MME	intronic	NA
RCC_T6--5	chr3:154890512	C	T	19	0.105	17	49.176	9.869	2	33.000	0.000	17	2	MME	intronic	NA
RCC_T6--6	chr3:154890512	C	T	34	0.059	32	55.969	10.107	2	50.500	24.749	32	2	MME	intronic	NA
RCC_T6--7	chr3:154890512	C	NA	18	0	17	50.294	12.922	0	0	0	17	0	MME	intronic	NA
RCC_T6--8	chr3:154890512	C	T	29	0.034	28	56.714	10.971	1	66.000	0.000	28	1	MME	intronic	NA
RCC_T6--GL	chr3:154890512	C	NA	42	0	42	56.524	10.523	0	0	0	42	0	MME	intronic	NA
RCC_T6--1	chr3:178947851	T	NA	382	0	382	68.419	5.256	0	0	0	382	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:178947851	T	NA	448	0	447	69.058	3.904	0	0	0	447	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:178947851	T	NA	438	0	438	67.336	6.440	0	0	0	438	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:178947851	T	NA	335	0	335	68.487	5.158	0	0	0	335	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:178947851	T	NA	438	0	438	68.384	5.776	0	0	0	438	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:178947851	T	NA	542	0	542	67.672	6.357	0	0	0	542	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:178947851	T	NA	379	0	379	69.100	4.106	0	0	0	379	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:178947851	T	G	416	0.144	356	68.379	5.578	60	67.233	7.319	356	60	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:178947851	T	NA	355	0	355	67.718	6.365	0	0	0	355	0	PIK3CA	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:189038442	C	T	84	0.274	61	69.639	2.422	23	68.130	6.824	61	23	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:189038442	C	T	99	0.172	82	68.207	5.519	17	67.235	7.910	82	17	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:189038442	C	T	85	0.224	66	65.848	8.757	19	65.579	6.628	66	19	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:189038442	C	T	64	0.016	63	64.794	8.696	1	33.000	0.000	63	1	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:189038442	C	NA	87	0	87	68.609	4.787	0	0	0	87	0	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:189038442	C	NA	101	0	101	67.842	4.543	0	0	0	101	0	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:189038442	C	NA	87	0	87	67.897	5.501	0	0	0	87	0	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:189038442	C	NA	95	0	95	67.705	4.773	0	0	0	95	0	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:189038442	C	NA	64	0	64	68.031	5.575	0	0	0	64	0	TPRG1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:2908348	C	NA	56	0	56	68.589	4.301	0	0	0	56	0	CNTN4	intronic	NA
RCC_T6--2	chr3:2908348	C	NA	54	0	54	68.556	3.585	0	0	0	54	0	CNTN4	intronic	NA
RCC_T6--3	chr3:2908348	C	NA	50	0	50	68.180	3.312	0	0	0	50	0	CNTN4	intronic	NA
RCC_T6--4	chr3:2908348	C	NA	40	0	40	67.675	4.329	0	0	0	40	0	CNTN4	intronic	NA
RCC_T6--5	chr3:2908348	C	NA	61	0	61	68.295	4.124	0	0	0	61	0	CNTN4	intronic	NA
RCC_T6--6	chr3:2908348	C	A	43	0.302	30	68.533	4.862	13	67.000	10.496	30	13	CNTN4	intronic	NA
RCC_T6--7	chr3:2908348	C	NA	50	0	50	67.840	4.191	0	0	0	50	0	CNTN4	intronic	NA
RCC_T6--8	chr3:2908348	C	NA	51	0	50	68.380	3.811	0	0	0	50	0	CNTN4	intronic	NA
RCC_T6--GL	chr3:2908348	C	NA	51	0	51	66.804	7.518	0	0	0	51	0	CNTN4	intronic	NA
RCC_T6--1	chr3:47162092	T	NA	90	0	90	67.322	5.440	0	0	0	90	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:47162092	T	NA	110	0	110	67.355	5.695	0	0	0	110	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:47162092	T	NA	75	0	75	65.200	7.913	0	0	0	75	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:47162092	T	C	111	0.171	92	66.674	6.444	19	68.000	3.496	92	19	SETD2	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:47162092	T	NA	103	0	103	68.194	4.490	0	0	0	103	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:47162092	T	NA	58	0	58	66.845	6.654	0	0	0	58	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:47162092	T	NA	93	0	93	67.215	6.577	0	0	0	93	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:47162092	T	NA	85	0	85	68.271	3.623	0	0	0	85	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:47162092	T	NA	79	0	79	66.101	5.915	0	0	0	79	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:47162095	T	NA	87	0	87	67.885	5.652	0	0	0	87	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:47162095	T	NA	110	0	110	68.000	5.712	0	0	0	110	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:47162095	T	NA	75	0	75	66.067	7.611	0	0	0	75	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:47162095	T	C	115	0.157	97	67.557	5.726	18	68.944	2.920	97	18	SETD2	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:47162095	T	NA	106	0	106	68.849	3.300	0	0	0	106	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:47162095	T	NA	60	0	60	67.933	5.934	0	0	0	60	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:47162095	T	NA	91	0	91	67.495	6.188	0	0	0	91	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:47162095	T	NA	86	0	86	68.349	4.831	0	0	0	86	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:47162095	T	NA	77	0	77	67.403	5.538	0	0	0	77	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:47162311	T	NA	96	0	96	68.073	6.843	0	0	0	96	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:47162311	T	NA	132	0	131	68.389	5.976	0	0	0	131	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:47162311	T	NA	103	0	103	67.117	5.020	0	0	0	103	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:47162311	T	A	120	0.158	101	67.277	5.179	19	68.368	3.022	101	19	SETD2	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:47162311	T	NA	107	0	107	68.364	4.301	0	0	0	107	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:47162311	T	NA	64	0	64	66.375	7.367	0	0	0	64	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:47162311	T	NA	103	0	103	67.786	4.758	0	0	0	103	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:47162311	T	NA	89	0	89	68.618	5.223	0	0	0	89	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:47162311	T	NA	131	0	131	67.237	5.890	0	0	0	131	0	SETD2	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:47164491	A	NA	248	0	248	68.339	3.999	0	0	0	248	0	SETD2	exonic	stopgain_SNV
RCC_T6--2	chr3:47164491	A	NA	240	0	240	68.183	4.483	0	0	0	240	0	SETD2	exonic	stopgain_SNV
RCC_T6--3	chr3:47164491	A	T	238	0.025	232	67.565	5.022	6	69.167	2.229	232	6	SETD2	exonic	stopgain_SNV
RCC_T6--4	chr3:47164491	A	T	279	0.068	260	67.792	4.628	19	64.526	8.834	260	19	SETD2	exonic	stopgain_SNV
RCC_T6--5	chr3:47164491	A	NA	274	0	274	68.120	5.205	0	0	0	274	0	SETD2	exonic	stopgain_SNV
RCC_T6--6	chr3:47164491	A	NA	193	0	193	67.611	4.743	0	0	0	193	0	SETD2	exonic	stopgain_SNV
RCC_T6--7	chr3:47164491	A	NA	250	0	250	68.532	3.016	0	0	0	250	0	SETD2	exonic	stopgain_SNV
RCC_T6--8	chr3:47164491	A	T	245	0.216	192	68.068	5.137	53	68.679	3.802	192	53	SETD2	exonic	stopgain_SNV
RCC_T6--GL	chr3:47164491	A	NA	232	0	232	67.806	4.947	0	0	0	232	0	SETD2	exonic	stopgain_SNV
RCC_T6--1	chr3:48456222	C	NA	57	0	57	64.947	6.825	0	0	0	57	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:48456222	C	NA	51	0	51	64.804	7.097	0	0	0	51	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:48456222	C	NA	65	0	64	63.766	8.061	0	0	0	64	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:48456222	C	NA	53	0	53	64.208	6.422	0	0	0	53	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:48456222	C	NA	48	0	48	64.500	7.017	0	0	0	48	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:48456222	C	NA	41	0	41	63.439	9.168	0	0	0	41	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:48456222	C	NA	58	0	58	65.017	5.978	0	0	0	58	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:48456222	C	T	29	0.138	25	65.520	5.197	4	64.250	1.500	25	4	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:48456222	C	NA	39	0	39	62.923	9.088	0	0	0	39	0	PLXNB1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:48626350	C	NA	42	0	42	66.833	5.300	0	0	0	42	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:48626350	C	NA	44	0	44	66.932	6.522	0	0	0	44	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:48626350	C	NA	33	0	33	66.485	8.047	0	0	0	33	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:48626350	C	NA	33	0	33	66.970	4.391	0	0	0	33	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:48626350	C	NA	47	0	47	64.447	8.153	0	0	0	47	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:48626350	C	NA	37	0	37	64.324	8.841	0	0	0	37	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:48626350	C	NA	47	0	47	63.064	10.137	0	0	0	47	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:48626350	C	A	31	0.129	27	69.222	2.736	4	66.750	3.594	27	4	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:48626350	C	NA	33	0	33	66.576	5.256	0	0	0	33	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:48629681	C	NA	36	0	36	65.361	7.492	0	0	0	36	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:48629681	C	NA	38	0	38	64.737	9.489	0	0	0	38	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:48629681	C	NA	39	0	39	64.103	6.561	0	0	0	39	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:48629681	C	NA	48	0	48	65.854	8.966	0	0	0	48	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:48629681	C	NA	54	0	54	64.833	7.731	0	0	0	54	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:48629681	C	NA	32	0	32	63.469	9.981	0	0	0	32	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:48629681	C	NA	54	0	54	65.741	7.773	0	0	0	54	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:48629681	C	A	28	0.143	24	67.708	3.581	4	65.500	3.697	24	4	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:48629681	C	NA	37	0	37	65.514	5.591	0	0	0	37	0	COL7A1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:52437263	C	NA	36	0	36	65.917	5.479	0	0	0	36	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--2	chr3:52437263	C	NA	38	0	38	66.605	6.660	0	0	0	38	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--3	chr3:52437263	C	NA	39	0	39	66.359	7.825	0	0	0	39	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--4	chr3:52437263	C	NA	43	0	43	66.628	4.059	0	0	0	43	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--5	chr3:52437263	C	NA	33	0	33	66.818	4.149	0	0	0	33	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--6	chr3:52437263	C	NA	36	0	36	66.000	6.441	0	0	0	36	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--7	chr3:52437263	C	T	35	0.114	31	64.774	8.317	4	64.250	2.217	31	4	BAP1	exonic	nonsynonymous_SNV
RCC_T6--8	chr3:52437263	C	NA	28	0	28	67.036	4.765	0	0	0	28	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr3:52437263	C	NA	35	0	35	61.771	9.503	0	0	0	35	0	BAP1	exonic	nonsynonymous_SNV
RCC_T6--1	chr3:56592722	C	A	34	0.118	30	67.733	4.563	4	60.000	8.718	30	4	CCDC66	intronic	NA
RCC_T6--2	chr3:56592722	C	NA	35	0	35	68.457	6.011	0	0	0	35	0	CCDC66	intronic	NA
RCC_T6--3	chr3:56592722	C	NA	16	0	16	68.000	3.795	0	0	0	16	0	CCDC66	intronic	NA
RCC_T6--4	chr3:56592722	C	A	19	0.053	18	67.000	3.630	1	39.000	0.000	18	1	CCDC66	intronic	NA
RCC_T6--5	chr3:56592722	C	NA	22	0	22	69.682	2.234	0	0	0	22	0	CCDC66	intronic	NA
RCC_T6--6	chr3:56592722	C	NA	14	0	14	66.429	5.721	0	0	0	14	0	CCDC66	intronic	NA
RCC_T6--7	chr3:56592722	C	NA	15	0	15	68.133	4.086	0	0	0	15	0	CCDC66	intronic	NA
RCC_T6--8	chr3:56592722	C	NA	21	0	21	67.619	3.918	0	0	0	21	0	CCDC66	intronic	NA
RCC_T6--GL	chr3:56592722	C	NA	35	0	35	66.400	6.093	0	0	0	35	0	CCDC66	intronic	NA
RCC_T6--1	chr4:113379001	C	NA	33	0	33	68.424	5.160	0	0	0	33	0	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--2	chr4:113379001	C	T	50	0.020	49	65.918	8.041	1	70.000	0.000	49	1	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--3	chr4:113379001	C	NA	44	0	44	66.114	6.793	0	0	0	44	0	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--4	chr4:113379001	C	T	54	0.093	48	67.646	6.145	5	67.200	3.633	48	5	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--5	chr4:113379001	C	NA	40	0	40	67.175	6.641	0	0	0	40	0	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--6	chr4:113379001	C	NA	30	0	30	65.367	9.499	0	0	0	30	0	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--7	chr4:113379001	C	T	61	0.016	60	68.083	6.116	1	71.000	0.000	60	1	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--8	chr4:113379001	C	T	53	0.377	33	66.515	6.676	20	67.950	3.395	33	20	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--GL	chr4:113379001	C	NA	46	0	46	65.565	8.879	0	0	0	46	0	ALPK1(dist=15237),NEUROG2(dist=55671)	intergenic	NA
RCC_T6--1	chr4:128733852	A	T	57	0.070	53	64.075	8.136	4	49.000	18.637	53	4	HSPA4L	intronic	NA
RCC_T6--2	chr4:128733852	A	T	56	0.036	53	63.283	9.910	2	45.500	17.678	53	2	HSPA4L	intronic	NA
RCC_T6--3	chr4:128733852	A	T	56	0.089	51	64.333	7.683	5	37.600	10.286	51	5	HSPA4L	intronic	NA
RCC_T6--4	chr4:128733852	A	T	66	0.061	62	62.742	9.957	4	41.000	16.000	62	4	HSPA4L	intronic	NA
RCC_T6--5	chr4:128733852	A	T	64	0.031	61	63.525	8.656	2	39.500	4.950	61	2	HSPA4L	intronic	NA
RCC_T6--6	chr4:128733852	A	T	61	0.098	54	64.352	9.639	6	40.833	12.416	54	6	HSPA4L	intronic	NA
RCC_T6--7	chr4:128733852	A	T	53	0.075	49	62.571	9.363	4	44.500	14.933	49	4	HSPA4L	intronic	NA
RCC_T6--8	chr4:128733852	A	T	71	0.169	58	63.034	7.481	12	45.167	13.354	58	12	HSPA4L	intronic	NA
RCC_T6--GL	chr4:128733852	A	NA	55	0	55	60.836	9.743	0	0	0	55	0	HSPA4L	intronic	NA
RCC_T6--1	chr4:152025273	G	T	49	0.020	48	68.958	4.115	1	65.000	0.000	48	1	RPS3A	UTR3	NA
RCC_T6--2	chr4:152025273	G	T	56	0.143	48	67.542	7.017	8	65.125	1.356	48	8	RPS3A	UTR3	NA
RCC_T6--3	chr4:152025273	G	NA	38	0	38	67.211	8.409	0	0	0	38	0	RPS3A	UTR3	NA
RCC_T6--4	chr4:152025273	G	T	38	0.079	35	66.229	6.334	3	62.667	1.155	35	3	RPS3A	UTR3	NA
RCC_T6--5	chr4:152025273	G	NA	38	0	38	66.868	8.814	0	0	0	38	0	RPS3A	UTR3	NA
RCC_T6--6	chr4:152025273	G	T	32	0.094	29	68.552	3.203	3	59.000	10.392	29	3	RPS3A	UTR3	NA
RCC_T6--7	chr4:152025273	G	T	60	0.017	59	67.729	7.956	1	65.000	0.000	59	1	RPS3A	UTR3	NA
RCC_T6--8	chr4:152025273	G	T	56	0.071	52	69.712	3.327	4	63.750	2.630	52	4	RPS3A	UTR3	NA
RCC_T6--GL	chr4:152025273	G	NA	49	0	49	67.633	4.685	0	0	0	49	0	RPS3A	UTR3	NA
RCC_T6--1	chr4:190394944	G	C	54	0.037	41	67.024	4.009	2	66.500	2.121	41	2	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--2	chr4:190394944	G	C	46	0.065	34	68.265	6.815	3	63.667	2.309	34	3	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--3	chr4:190394944	G	C	35	0.029	23	67.087	4.512	1	65.000	0.000	23	1	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--4	chr4:190394944	G	C	48	0.021	40	65.475	8.542	1	65.000	0.000	40	1	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--5	chr4:190394944	G	NA	39	0	17	68.059	3.699	0	0	0	17	0	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--6	chr4:190394944	G	NA	38	0	26	67.923	4.758	0	0	0	26	0	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--7	chr4:190394944	G	C	50	0.040	30	66.100	7.604	2	63.500	2.121	30	2	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--8	chr4:190394944	G	C	47	0.106	28	67.464	7.486	5	63.600	1.949	28	5	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--GL	chr4:190394944	G	NA	47	0	34	67.382	4.271	0	0	0	34	0	LINC01060(dist=871882),FRG1(dist=467030)	intergenic	NA
RCC_T6--1	chr4:20482331	T	NA	114	0	114	68.763	5.481	0	0	0	114	0	SLIT2	intronic	NA
RCC_T6--2	chr4:20482331	T	NA	110	0	109	69.083	4.794	0	0	0	109	0	SLIT2	intronic	NA
RCC_T6--3	chr4:20482331	T	C	133	0.045	127	68.134	3.778	6	67.167	3.920	127	6	SLIT2	intronic	NA
RCC_T6--4	chr4:20482331	T	C	137	0.058	129	67.946	5.689	8	68.500	5.043	129	8	SLIT2	intronic	NA
RCC_T6--5	chr4:20482331	T	NA	127	0	127	68.181	6.355	0	0	0	127	0	SLIT2	intronic	NA
RCC_T6--6	chr4:20482331	T	NA	132	0	132	68.386	5.233	0	0	0	132	0	SLIT2	intronic	NA
RCC_T6--7	chr4:20482331	T	NA	153	0	153	68.458	5.775	0	0	0	153	0	SLIT2	intronic	NA
RCC_T6--8	chr4:20482331	T	C	129	0.225	100	67.140	6.326	29	69.103	3.266	100	29	SLIT2	intronic	NA
RCC_T6--GL	chr4:20482331	T	NA	103	0	103	68.534	5.192	0	0	0	103	0	SLIT2	intronic	NA
RCC_T6--1	chr4:25019601	C	T	239	0.130	208	68.486	4.462	31	67.065	6.213	208	31	LGI2	intronic	NA
RCC_T6--2	chr4:25019601	C	T	214	0.103	192	68.344	5.350	22	66.909	2.975	192	22	LGI2	intronic	NA
RCC_T6--3	chr4:25019601	C	T	237	0.122	208	67.067	7.060	29	66.207	4.769	208	29	LGI2	intronic	NA
RCC_T6--4	chr4:25019601	C	T	212	0.047	202	66.693	6.691	10	64.200	3.736	202	10	LGI2	intronic	NA
RCC_T6--5	chr4:25019601	C	T	223	0.045	212	68.325	4.458	10	67.700	2.710	212	10	LGI2	intronic	NA
RCC_T6--6	chr4:25019601	C	T	191	0.283	136	67.176	6.632	54	65.870	5.657	136	54	LGI2	intronic	NA
RCC_T6--7	chr4:25019601	C	T	229	0.044	219	67.836	5.757	10	68.700	1.767	219	10	LGI2	intronic	NA
RCC_T6--8	chr4:25019601	C	T	251	0.187	204	68.740	4.344	47	67.745	3.986	204	47	LGI2	intronic	NA
RCC_T6--GL	chr4:25019601	C	NA	194	0	194	67.871	5.498	0	0	0	194	0	LGI2	intronic	NA
RCC_T6--1	chr4:2934189	G	NA	33	0	32	66.312	5.114	0	0	0	32	0	MFSD10	exonic	synonymous_SNV
RCC_T6--2	chr4:2934189	G	NA	42	0	42	63.262	11.253	0	0	0	42	0	MFSD10	exonic	synonymous_SNV
RCC_T6--3	chr4:2934189	G	T	30	0.033	29	64.103	10.030	1	33.000	0.000	29	1	MFSD10	exonic	synonymous_SNV
RCC_T6--4	chr4:2934189	G	NA	46	0	46	65.087	5.792	0	0	0	46	0	MFSD10	exonic	synonymous_SNV
RCC_T6--5	chr4:2934189	G	NA	28	0	28	64.786	9.662	0	0	0	28	0	MFSD10	exonic	synonymous_SNV
RCC_T6--6	chr4:2934189	G	NA	24	0	24	65.833	4.993	0	0	0	24	0	MFSD10	exonic	synonymous_SNV
RCC_T6--7	chr4:2934189	G	T	32	0.125	28	64.036	9.037	4	68.000	4.690	28	4	MFSD10	exonic	synonymous_SNV
RCC_T6--8	chr4:2934189	G	NA	35	0	35	63.686	8.950	0	0	0	35	0	MFSD10	exonic	synonymous_SNV
RCC_T6--GL	chr4:2934189	G	NA	34	0	34	65.265	8.621	0	0	0	34	0	MFSD10	exonic	synonymous_SNV
RCC_T6--1	chr4:36130155	C	T	109	0.147	93	65.742	8.891	16	65.000	7.857	93	16	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--2	chr4:36130155	C	T	102	0.137	87	66.931	7.157	14	65.643	10.602	87	14	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--3	chr4:36130155	C	T	99	0.131	84	66.417	8.831	13	61.769	12.063	84	13	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--4	chr4:36130155	C	T	73	0.082	66	64.288	9.533	6	69.333	6.055	66	6	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--5	chr4:36130155	C	T	99	0.101	89	66.382	7.362	10	68.900	3.348	89	10	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--6	chr4:36130155	C	T	81	0.247	61	64.967	7.916	20	63.450	13.125	61	20	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--7	chr4:36130155	C	T	82	0.049	78	64.615	9.084	4	64.500	13.699	78	4	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--8	chr4:36130155	C	T	111	0.270	80	66.900	6.739	30	68.133	6.039	80	30	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr4:36130155	C	NA	74	0	74	66.027	7.135	0	0	0	74	0	ARAP2	exonic	nonsynonymous_SNV
RCC_T6--1	chr4:55953780	C	NA	66	0	65	67.138	5.640	0	0	0	65	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--2	chr4:55953780	C	NA	61	0	61	68.230	3.561	0	0	0	61	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--3	chr4:55953780	C	T	57	0.018	56	66.768	6.472	1	72.000	0.000	56	1	KDR	exonic	nonsynonymous_SNV
RCC_T6--4	chr4:55953780	C	T	66	0.121	58	67.293	3.784	8	66.375	1.923	58	8	KDR	exonic	nonsynonymous_SNV
RCC_T6--5	chr4:55953780	C	NA	97	0	97	66.907	6.673	0	0	0	97	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--6	chr4:55953780	C	NA	61	0	60	67.433	4.817	0	0	0	60	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--7	chr4:55953780	C	NA	79	0	79	66.291	6.796	0	0	0	79	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--8	chr4:55953780	C	T	66	0.152	56	67.446	4.129	10	65.200	4.517	56	10	KDR	exonic	nonsynonymous_SNV
RCC_T6--GL	chr4:55953780	C	NA	51	0	51	67.216	4.022	0	0	0	51	0	KDR	exonic	nonsynonymous_SNV
RCC_T6--1	chr4:69097157	A	T	46	0.065	43	69.442	3.026	3	65.000	0.000	43	3	TMPRSS11B	intronic	NA
RCC_T6--2	chr4:69097157	A	T	52	0.038	50	69.440	2.793	2	63.500	2.121	50	2	TMPRSS11B	intronic	NA
RCC_T6--3	chr4:69097157	A	T	39	0.077	36	68.861	3.922	3	65.000	0.000	36	3	TMPRSS11B	intronic	NA
RCC_T6--4	chr4:69097157	A	T	46	0.196	37	68.919	5.423	9	63.000	2.449	37	9	TMPRSS11B	intronic	NA
RCC_T6--5	chr4:69097157	A	NA	49	0	49	69.286	2.784	0	0	0	49	0	TMPRSS11B	intronic	NA
RCC_T6--6	chr4:69097157	A	T	52	0.038	50	68.560	4.630	2	63.500	3.536	50	2	TMPRSS11B	intronic	NA
RCC_T6--7	chr4:69097157	A	T	65	0.123	57	69.772	2.196	8	62.500	2.449	57	8	TMPRSS11B	intronic	NA
RCC_T6--8	chr4:69097157	A	T	44	0.023	43	69.000	2.610	1	66.000	0.000	43	1	TMPRSS11B	intronic	NA
RCC_T6--GL	chr4:69097157	A	NA	53	0	53	69.000	3.627	0	0	0	53	0	TMPRSS11B	intronic	NA
RCC_T6--1	chr4:69097158	T	A	46	0.065	43	68.488	3.978	3	65.000	0.000	43	3	TMPRSS11B	intronic	NA
RCC_T6--2	chr4:69097158	T	A	51	0.020	50	68.500	4.200	1	65.000	0.000	50	1	TMPRSS11B	intronic	NA
RCC_T6--3	chr4:69097158	T	A	38	0.053	36	67.306	6.196	2	65.000	0.000	36	2	TMPRSS11B	intronic	NA
RCC_T6--4	chr4:69097158	T	A	46	0.196	36	68.389	5.658	9	63.556	1.509	36	9	TMPRSS11B	intronic	NA
RCC_T6--5	chr4:69097158	T	NA	49	0	49	68.388	4.396	0	0	0	49	0	TMPRSS11B	intronic	NA
RCC_T6--6	chr4:69097158	T	A	51	0.020	50	68.460	3.688	1	66.000	0.000	50	1	TMPRSS11B	intronic	NA
RCC_T6--7	chr4:69097158	T	A	65	0.123	57	68.211	4.601	8	63.250	1.669	57	8	TMPRSS11B	intronic	NA
RCC_T6--8	chr4:69097158	T	A	44	0.023	43	67.721	4.626	1	66.000	0.000	43	1	TMPRSS11B	intronic	NA
RCC_T6--GL	chr4:69097158	T	NA	53	0	53	67.151	6.461	0	0	0	53	0	TMPRSS11B	intronic	NA
RCC_T6--1	chr4:77290577	A	C	34	0.235	26	67.385	7.890	8	36.875	10.960	26	8	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--2	chr4:77290577	A	C	45	0.156	38	64.947	10.509	7	34.714	4.536	38	7	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--3	chr4:77290577	A	C	37	0.081	34	59.176	13.681	3	34.333	2.309	34	3	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--4	chr4:77290577	A	C	42	0.119	37	62.730	9.932	5	35.000	4.472	37	5	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--5	chr4:77290577	A	C	34	0.088	31	63.516	10.347	3	33.000	0.000	31	3	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--6	chr4:77290577	A	C	46	0.022	45	62.578	12.646	1	43.000	0.000	45	1	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--7	chr4:77290577	A	C	36	0.167	30	60.600	13.260	6	38.667	8.238	30	6	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--8	chr4:77290577	A	C	36	0.111	32	62.906	11.263	4	36.000	6.000	32	4	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--GL	chr4:77290577	A	NA	40	0	39	62.795	10.969	0	0	0	39	0	CCDC158(NM_001042784:exon11:c.1347+2T>G)	splicing	NA
RCC_T6--1	chr4:88400748	G	NA	54	0	54	66.463	7.660	0	0	0	54	0	SPARCL1	intronic	NA
RCC_T6--2	chr4:88400748	G	NA	74	0	74	67.608	5.880	0	0	0	74	0	SPARCL1	intronic	NA
RCC_T6--3	chr4:88400748	G	A	54	0.019	53	66.679	7.559	1	70.000	0.000	53	1	SPARCL1	intronic	NA
RCC_T6--4	chr4:88400748	G	A	57	0.088	52	66.135	8.955	5	68.800	1.643	52	5	SPARCL1	intronic	NA
RCC_T6--5	chr4:88400748	G	A	70	0.043	67	67.134	5.667	3	66.667	2.082	67	3	SPARCL1	intronic	NA
RCC_T6--6	chr4:88400748	G	NA	49	0	49	66.306	6.743	0	0	0	49	0	SPARCL1	intronic	NA
RCC_T6--7	chr4:88400748	G	NA	52	0	52	69.135	3.413	0	0	0	52	0	SPARCL1	intronic	NA
RCC_T6--8	chr4:88400748	G	A	61	0.230	47	67.213	6.890	14	67.000	5.023	47	14	SPARCL1	intronic	NA
RCC_T6--GL	chr4:88400748	G	NA	63	0	63	67.079	4.674	0	0	0	63	0	SPARCL1	intronic	NA
RCC_T6--1	chr5:135186187	T	NA	53	0	53	63.151	9.528	0	0	0	53	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--2	chr5:135186187	T	NA	45	0	45	62.311	11.043	0	0	0	45	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--3	chr5:135186187	T	NA	49	0	49	61.898	9.715	0	0	0	49	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--4	chr5:135186187	T	NA	37	0	36	63.389	9.926	0	0	0	36	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--5	chr5:135186187	T	NA	43	0	43	64.302	5.143	0	0	0	43	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--6	chr5:135186187	T	NA	39	0	39	64.359	7.768	0	0	0	39	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--7	chr5:135186187	T	A	36	0.111	32	64.688	5.844	4	59.750	6.946	32	4	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--8	chr5:135186187	T	NA	38	0	38	65.158	8.059	0	0	0	38	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--GL	chr5:135186187	T	NA	47	0	47	61.872	11.305	0	0	0	47	0	SLC25A48(NM_145282:exon3:c.162+2T>A)	splicing	NA
RCC_T6--1	chr5:13716838	C	NA	30	0	30	65.900	7.613	0	0	0	30	0	DNAH5	intronic	NA
RCC_T6--2	chr5:13716838	C	NA	19	0	19	68.842	5.795	0	0	0	19	0	DNAH5	intronic	NA
RCC_T6--3	chr5:13716838	C	NA	18	0	18	67.167	3.839	0	0	0	18	0	DNAH5	intronic	NA
RCC_T6--4	chr5:13716838	C	NA	26	0	26	63.423	11.559	0	0	0	26	0	DNAH5	intronic	NA
RCC_T6--5	chr5:13716838	C	NA	33	0	33	64.424	11.294	0	0	0	33	0	DNAH5	intronic	NA
RCC_T6--6	chr5:13716838	C	NA	31	0	31	66.516	7.911	0	0	0	31	0	DNAH5	intronic	NA
RCC_T6--7	chr5:13716838	C	A	29	0.138	25	66.560	8.322	4	68.750	0.957	25	4	DNAH5	intronic	NA
RCC_T6--8	chr5:13716838	C	A	40	0.025	39	66.846	5.655	1	69.000	0.000	39	1	DNAH5	intronic	NA
RCC_T6--GL	chr5:13716838	C	NA	36	0	36	65.306	9.786	0	0	0	36	0	DNAH5	intronic	NA
RCC_T6--1	chr5:16474778	C	T	65	0.062	61	67.213	7.398	4	49.500	19.053	61	4	FAM134B	UTR3	NA
RCC_T6--2	chr5:16474778	C	T	74	0.027	72	67.444	6.871	2	50.500	20.506	72	2	FAM134B	UTR3	NA
RCC_T6--3	chr5:16474778	C	T	73	0.068	67	66.701	8.002	5	45.800	17.655	67	5	FAM134B	UTR3	NA
RCC_T6--4	chr5:16474778	C	NA	45	0	44	67.341	4.446	0	0	0	44	0	FAM134B	UTR3	NA
RCC_T6--5	chr5:16474778	C	T	59	0.034	57	68.877	3.689	2	39.500	9.192	57	2	FAM134B	UTR3	NA
RCC_T6--6	chr5:16474778	C	T	63	0.048	60	67.450	6.223	3	43.333	17.898	60	3	FAM134B	UTR3	NA
RCC_T6--7	chr5:16474778	C	T	52	0.154	44	67.045	6.840	8	52.125	15.431	44	8	FAM134B	UTR3	NA
RCC_T6--8	chr5:16474778	C	T	66	0.045	63	65.841	9.211	3	54.667	16.166	63	3	FAM134B	UTR3	NA
RCC_T6--GL	chr5:16474778	C	NA	55	0	55	65.855	8.874	0	0	0	55	0	FAM134B	UTR3	NA
RCC_T6--1	chr5:175913278	C	NA	38	0	38	68.132	3.899	0	0	0	38	0	FAF2	intronic	NA
RCC_T6--2	chr5:175913278	C	A	39	0.026	38	67.684	6.807	1	41.000	0.000	38	1	FAF2	intronic	NA
RCC_T6--3	chr5:175913278	C	NA	30	0	30	66.033	8.088	0	0	0	30	0	FAF2	intronic	NA
RCC_T6--4	chr5:175913278	C	NA	41	0	41	68.049	3.391	0	0	0	41	0	FAF2	intronic	NA
RCC_T6--5	chr5:175913278	C	NA	41	0	41	66.707	7.026	0	0	0	41	0	FAF2	intronic	NA
RCC_T6--6	chr5:175913278	C	NA	27	0	27	66.407	6.097	0	0	0	27	0	FAF2	intronic	NA
RCC_T6--7	chr5:175913278	C	A	26	0.154	22	69.227	3.070	4	61.750	4.193	22	4	FAF2	intronic	NA
RCC_T6--8	chr5:175913278	C	NA	37	0	37	67.568	5.336	0	0	0	37	0	FAF2	intronic	NA
RCC_T6--GL	chr5:175913278	C	NA	33	0	33	68.121	3.407	0	0	0	33	0	FAF2	intronic	NA
RCC_T6--1	chr5:176915042	A	NA	51	0	51	55.157	13.172	0	0	0	51	0	PDLIM7	intronic	NA
RCC_T6--2	chr5:176915042	A	C	43	0.047	41	56.171	13.894	2	33.000	0.000	41	2	PDLIM7	intronic	NA
RCC_T6--3	chr5:176915042	A	C	44	0.045	42	57.905	11.904	2	33.000	0.000	42	2	PDLIM7	intronic	NA
RCC_T6--4	chr5:176915042	A	C	59	0.085	54	58.944	10.072	5	36.200	4.087	54	5	PDLIM7	intronic	NA
RCC_T6--5	chr5:176915042	A	C	53	0.094	47	53.511	14.424	5	33.000	0.000	47	5	PDLIM7	intronic	NA
RCC_T6--6	chr5:176915042	A	C	38	0.132	33	57.667	10.979	5	34.000	2.236	33	5	PDLIM7	intronic	NA
RCC_T6--7	chr5:176915042	A	C	59	0.068	55	56.000	12.393	4	34.750	2.062	55	4	PDLIM7	intronic	NA
RCC_T6--8	chr5:176915042	A	C	31	0.161	26	54.962	12.944	5	34.800	1.643	26	5	PDLIM7	intronic	NA
RCC_T6--GL	chr5:176915042	A	NA	41	0	40	53.825	13.079	0	0	0	40	0	PDLIM7	intronic	NA
RCC_T6--1	chr5:179137089	G	NA	140	0	140	68.664	3.781	0	0	0	140	0	CANX	intronic	NA
RCC_T6--2	chr5:179137089	G	A	147	0.095	132	68.652	4.651	14	67.857	6.562	132	14	CANX	intronic	NA
RCC_T6--3	chr5:179137089	G	A	104	0.135	90	67.700	6.129	14	67.571	4.033	90	14	CANX	intronic	NA
RCC_T6--4	chr5:179137089	G	NA	111	0	111	67.982	5.638	0	0	0	111	0	CANX	intronic	NA
RCC_T6--5	chr5:179137089	G	NA	127	0	127	67.307	6.749	0	0	0	127	0	CANX	intronic	NA
RCC_T6--6	chr5:179137089	G	NA	103	0	103	67.592	5.838	0	0	0	103	0	CANX	intronic	NA
RCC_T6--7	chr5:179137089	G	NA	121	0	121	68.066	6.016	0	0	0	121	0	CANX	intronic	NA
RCC_T6--8	chr5:179137089	G	NA	132	0	132	68.917	4.588	0	0	0	132	0	CANX	intronic	NA
RCC_T6--GL	chr5:179137089	G	NA	129	0	129	67.256	7.298	0	0	0	129	0	CANX	intronic	NA
RCC_T6--1	chr5:36226723	G	NA	76	0	76	68.724	5.383	0	0	0	76	0	NADK2	intronic	NA
RCC_T6--2	chr5:36226723	G	NA	62	0	62	69.210	3.888	0	0	0	62	0	NADK2	intronic	NA
RCC_T6--3	chr5:36226723	G	T	63	0.032	61	68.033	4.450	2	69.500	0.707	61	2	NADK2	intronic	NA
RCC_T6--4	chr5:36226723	G	T	48	0.146	41	68.512	3.668	7	69.143	2.340	41	7	NADK2	intronic	NA
RCC_T6--5	chr5:36226723	G	NA	83	0	83	69.904	3.399	0	0	0	83	0	NADK2	intronic	NA
RCC_T6--6	chr5:36226723	G	NA	72	0	72	68.722	4.470	0	0	0	72	0	NADK2	intronic	NA
RCC_T6--7	chr5:36226723	G	NA	60	0	60	69.067	3.444	0	0	0	60	0	NADK2	intronic	NA
RCC_T6--8	chr5:36226723	G	T	78	0.167	65	68.692	5.062	13	69.077	3.040	65	13	NADK2	intronic	NA
RCC_T6--GL	chr5:36226723	G	NA	72	0	72	69.250	3.426	0	0	0	72	0	NADK2	intronic	NA
RCC_T6--1	chr5:41000756	C	NA	37	0	37	65.216	8.648	0	0	0	37	0	MROH2B	intronic	NA
RCC_T6--2	chr5:41000756	C	NA	42	0	42	67.714	3.438	0	0	0	42	0	MROH2B	intronic	NA
RCC_T6--3	chr5:41000756	C	NA	33	0	33	66.697	2.651	0	0	0	33	0	MROH2B	intronic	NA
RCC_T6--4	chr5:41000756	C	NA	33	0	33	64.970	7.355	0	0	0	33	0	MROH2B	intronic	NA
RCC_T6--5	chr5:41000756	C	NA	44	0	44	66.886	3.459	0	0	0	44	0	MROH2B	intronic	NA
RCC_T6--6	chr5:41000756	C	NA	37	0	37	65.297	6.342	0	0	0	37	0	MROH2B	intronic	NA
RCC_T6--7	chr5:41000756	C	A	31	0.129	27	67.259	3.265	4	63.250	6.292	27	4	MROH2B	intronic	NA
RCC_T6--8	chr5:41000756	C	NA	31	0	31	66.839	6.846	0	0	0	31	0	MROH2B	intronic	NA
RCC_T6--GL	chr5:41000756	C	NA	38	0	38	64.974	5.180	0	0	0	38	0	MROH2B	intronic	NA
RCC_T6--1	chr5:80639653	C	NA	131	0	131	68.191	5.444	0	0	0	131	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--2	chr5:80639653	C	G	99	0.081	91	66.835	7.013	8	68.375	2.722	91	8	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--3	chr5:80639653	C	G	101	0.129	88	67.091	6.353	13	68.231	3.919	88	13	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--4	chr5:80639653	C	NA	73	0	73	67.137	6.083	0	0	0	73	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--5	chr5:80639653	C	NA	89	0	89	68.449	4.585	0	0	0	89	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--6	chr5:80639653	C	NA	94	0	94	67.670	5.278	0	0	0	94	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--7	chr5:80639653	C	NA	107	0	107	68.047	4.239	0	0	0	107	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--8	chr5:80639653	C	NA	118	0	118	67.814	5.257	0	0	0	118	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--GL	chr5:80639653	C	NA	98	0	98	68.102	4.612	0	0	0	98	0	ACOT12	exonic	nonsynonymous_SNV
RCC_T6--1	chr6:105300264	A	G	45	0.067	42	67.095	8.153	3	66.333	1.528	42	3	HACE1	intronic	NA
RCC_T6--2	chr6:105300264	A	G	34	0.029	33	67.242	4.886	1	62.000	0.000	33	1	HACE1	intronic	NA
RCC_T6--3	chr6:105300264	A	G	39	0.128	34	68.294	3.770	5	65.600	2.510	34	5	HACE1	intronic	NA
RCC_T6--4	chr6:105300264	A	G	48	0.021	47	68.638	5.411	1	65.000	0.000	47	1	HACE1	intronic	NA
RCC_T6--5	chr6:105300264	A	G	47	0.021	46	68.696	3.489	1	66.000	0.000	46	1	HACE1	intronic	NA
RCC_T6--6	chr6:105300264	A	G	37	0.027	36	66.944	4.702	1	64.000	0.000	36	1	HACE1	intronic	NA
RCC_T6--7	chr6:105300264	A	G	29	0.034	28	69.286	2.355	1	66.000	0.000	28	1	HACE1	intronic	NA
RCC_T6--8	chr6:105300264	A	G	56	0.054	53	68.302	5.750	3	66.667	1.155	53	3	HACE1	intronic	NA
RCC_T6--GL	chr6:105300264	A	NA	37	0	37	68.108	4.695	0	0	0	37	0	HACE1	intronic	NA
RCC_T6--1	chr6:126073266	A	C	28	0.107	25	53.080	9.652	3	40.667	7.234	25	3	HEY2	intronic	NA
RCC_T6--2	chr6:126073266	A	C	44	0.023	43	52.814	10.606	1	36.000	0.000	43	1	HEY2	intronic	NA
RCC_T6--3	chr6:126073266	A	NA	32	0	32	49.688	10.870	0	0	0	32	0	HEY2	intronic	NA
RCC_T6--4	chr6:126073266	A	C	36	0.194	28	52.786	9.574	7	37.286	4.071	28	7	HEY2	intronic	NA
RCC_T6--5	chr6:126073266	A	NA	23	0	23	52.609	9.009	0	0	0	23	0	HEY2	intronic	NA
RCC_T6--6	chr6:126073266	A	C	33	0.121	29	52.552	9.956	4	34.500	1.732	29	4	HEY2	intronic	NA
RCC_T6--7	chr6:126073266	A	C	32	0.062	30	54.333	11.372	2	34.500	2.121	30	2	HEY2	intronic	NA
RCC_T6--8	chr6:126073266	A	C	36	0.028	34	51.000	10.177	1	36.000	0.000	34	1	HEY2	intronic	NA
RCC_T6--GL	chr6:126073266	A	NA	38	0	38	53.763	11.238	0	0	0	38	0	HEY2	intronic	NA
RCC_T6--1	chr6:129486791	G	C	49	0.286	35	67.943	6.730	14	69.143	2.656	35	14	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--2	chr6:129486791	G	C	52	0.077	47	69.617	2.270	4	66.750	1.500	47	4	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--3	chr6:129486791	G	C	50	0.080	46	66.348	9.291	4	66.250	5.620	46	4	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--4	chr6:129486791	G	C	48	0.021	47	68.149	3.629	1	69.000	0.000	47	1	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--5	chr6:129486791	G	C	59	0.051	56	68.607	5.297	3	71.667	0.577	56	3	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--6	chr6:129486791	G	C	57	0.298	40	67.475	7.282	17	69.647	2.448	40	17	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--7	chr6:129486791	G	C	45	0.044	43	69.209	2.678	2	66.000	1.414	43	2	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--8	chr6:129486791	G	C	48	0.104	43	67.721	5.921	5	70.000	2.449	43	5	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr6:129486791	G	NA	51	0	51	68.176	5.480	0	0	0	51	0	LAMA2	exonic	nonsynonymous_SNV
RCC_T6--1	chr6:149274963	G	NA	29	0	29	56.931	10.754	0	0	0	29	0	UST	intronic	NA
RCC_T6--2	chr6:149274963	G	T	38	0.079	35	55.657	10.765	3	44.333	14.742	35	3	UST	intronic	NA
RCC_T6--3	chr6:149274963	G	NA	24	0	24	57.125	9.242	0	0	0	24	0	UST	intronic	NA
RCC_T6--4	chr6:149274963	G	T	19	0.211	15	55.933	9.453	4	48.750	16.820	15	4	UST	intronic	NA
RCC_T6--5	chr6:149274963	G	NA	23	0	23	58.304	9.431	0	0	0	23	0	UST	intronic	NA
RCC_T6--6	chr6:149274963	G	T	28	0.071	26	55.731	10.367	2	36.500	4.950	26	2	UST	intronic	NA
RCC_T6--7	chr6:149274963	G	T	25	0.080	23	55.565	9.390	2	41.000	11.314	23	2	UST	intronic	NA
RCC_T6--8	chr6:149274963	G	NA	30	0	30	56.633	10.594	0	0	0	30	0	UST	intronic	NA
RCC_T6--GL	chr6:149274963	G	NA	34	0	34	59.441	8.718	0	0	0	34	0	UST	intronic	NA
RCC_T6--1	chr6:152783842	G	C	123	0.114	109	67.413	4.599	14	67.786	4.173	109	14	SYNE1	intronic	NA
RCC_T6--2	chr6:152783842	G	C	124	0.089	113	68.504	3.645	11	69.364	3.009	113	11	SYNE1	intronic	NA
RCC_T6--3	chr6:152783842	G	C	135	0.119	119	65.563	6.567	16	66.625	4.745	119	16	SYNE1	intronic	NA
RCC_T6--4	chr6:152783842	G	C	117	0.043	112	66.482	6.322	5	65.000	8.746	112	5	SYNE1	intronic	NA
RCC_T6--5	chr6:152783842	G	C	126	0.048	120	67.017	6.097	6	66.833	6.369	120	6	SYNE1	intronic	NA
RCC_T6--6	chr6:152783842	G	C	132	0.288	93	66.581	5.563	38	65.132	8.441	93	38	SYNE1	intronic	NA
RCC_T6--7	chr6:152783842	G	C	104	0.010	103	67.835	4.655	1	68.000	0.000	103	1	SYNE1	intronic	NA
RCC_T6--8	chr6:152783842	G	C	153	0.288	109	67.183	4.495	44	67.977	2.889	109	44	SYNE1	intronic	NA
RCC_T6--GL	chr6:152783842	G	NA	103	0	103	67.495	4.767	0	0	0	103	0	SYNE1	intronic	NA
RCC_T6--1	chr6:43109795	T	NA	30	0	30	64.833	8.933	0	0	0	30	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--2	chr6:43109795	T	A	35	0.114	31	65.871	6.021	4	66.250	0.957	31	4	PTK7	exonic	nonsynonymous_SNV
RCC_T6--3	chr6:43109795	T	NA	32	0	32	66.719	6.741	0	0	0	32	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--4	chr6:43109795	T	NA	24	0	24	67.417	3.092	0	0	0	24	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--5	chr6:43109795	T	NA	32	0	32	63.375	10.481	0	0	0	32	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--6	chr6:43109795	T	NA	23	0	23	63.304	10.355	0	0	0	23	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--7	chr6:43109795	T	NA	27	0	27	66.963	5.495	0	0	0	27	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--8	chr6:43109795	T	NA	28	0	28	66.571	3.795	0	0	0	28	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--GL	chr6:43109795	T	NA	41	0	41	65.732	5.810	0	0	0	41	0	PTK7	exonic	nonsynonymous_SNV
RCC_T6--1	chr6:47592019	C	NA	48	0	48	69.250	3.226	0	0	0	48	0	CD2AP	UTR3	NA
RCC_T6--2	chr6:47592019	C	NA	33	0	33	68.939	2.609	0	0	0	33	0	CD2AP	UTR3	NA
RCC_T6--3	chr6:47592019	C	NA	47	0	47	66.362	7.998	0	0	0	47	0	CD2AP	UTR3	NA
RCC_T6--4	chr6:47592019	C	NA	55	0	55	68.291	5.824	0	0	0	55	0	CD2AP	UTR3	NA
RCC_T6--5	chr6:47592019	C	A	35	0.114	31	68.097	4.901	4	68.750	3.202	31	4	CD2AP	UTR3	NA
RCC_T6--6	chr6:47592019	C	NA	37	0	37	69.027	2.833	0	0	0	37	0	CD2AP	UTR3	NA
RCC_T6--7	chr6:47592019	C	NA	45	0	45	68.667	3.826	0	0	0	45	0	CD2AP	UTR3	NA
RCC_T6--8	chr6:47592019	C	NA	45	0	45	68.378	6.607	0	0	0	45	0	CD2AP	UTR3	NA
RCC_T6--GL	chr6:47592019	C	NA	48	0	48	67.125	5.290	0	0	0	48	0	CD2AP	UTR3	NA
RCC_T6--1	chr7:130927449	C	NA	32	0	32	66.062	7.725	0	0	0	32	0	MKLN1	intronic	NA
RCC_T6--2	chr7:130927449	C	NA	46	0	46	67.087	3.829	0	0	0	46	0	MKLN1	intronic	NA
RCC_T6--3	chr7:130927449	C	NA	42	0	42	65.333	6.885	0	0	0	42	0	MKLN1	intronic	NA
RCC_T6--4	chr7:130927449	C	NA	46	0	46	64.043	7.925	0	0	0	46	0	MKLN1	intronic	NA
RCC_T6--5	chr7:130927449	C	NA	40	0	40	67.000	3.876	0	0	0	40	0	MKLN1	intronic	NA
RCC_T6--6	chr7:130927449	C	NA	38	0	38	68.000	3.464	0	0	0	38	0	MKLN1	intronic	NA
RCC_T6--7	chr7:130927449	C	NA	51	0	51	67.118	5.935	0	0	0	51	0	MKLN1	intronic	NA
RCC_T6--8	chr7:130927449	C	A	31	0.129	27	67.778	3.672	4	66.250	2.986	27	4	MKLN1	intronic	NA
RCC_T6--GL	chr7:130927449	C	NA	36	0	36	67.056	4.810	0	0	0	36	0	MKLN1	intronic	NA
RCC_T6--1	chr7:15427276	G	A	43	0.070	40	68.300	5.599	3	68.000	0.000	40	3	AGMO	intronic	NA
RCC_T6--2	chr7:15427276	G	A	35	0.200	28	68.464	6.009	7	64.143	3.078	28	7	AGMO	intronic	NA
RCC_T6--3	chr7:15427276	G	NA	17	0	17	68.588	4.273	0	0	0	17	0	AGMO	intronic	NA
RCC_T6--4	chr7:15427276	G	A	21	0.048	20	69.300	3.130	1	58.000	0.000	20	1	AGMO	intronic	NA
RCC_T6--5	chr7:15427276	G	A	35	0.029	34	68.824	4.914	1	68.000	0.000	34	1	AGMO	intronic	NA
RCC_T6--6	chr7:15427276	G	A	26	0.038	25	68.360	2.984	1	68.000	0.000	25	1	AGMO	intronic	NA
RCC_T6--7	chr7:15427276	G	A	31	0.032	30	69.700	2.938	1	62.000	0.000	30	1	AGMO	intronic	NA
RCC_T6--8	chr7:15427276	G	A	50	0.020	49	68.306	4.891	1	62.000	0.000	49	1	AGMO	intronic	NA
RCC_T6--GL	chr7:15427276	G	NA	34	0	34	68.471	5.177	0	0	0	34	0	AGMO	intronic	NA
RCC_T6--1	chr7:156746993	G	NA	32	0	31	68.290	5.693	0	0	0	31	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--2	chr7:156746993	G	NA	30	0	30	67.533	5.251	0	0	0	30	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--3	chr7:156746993	G	NA	36	0	36	66.444	6.474	0	0	0	36	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--4	chr7:156746993	G	NA	22	0	22	63.909	7.177	0	0	0	22	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--5	chr7:156746993	G	NA	30	0	30	69.200	3.566	0	0	0	30	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--6	chr7:156746993	G	NA	25	0	25	68.600	4.646	0	0	0	25	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--7	chr7:156746993	G	T	31	0.129	27	68.037	4.220	4	64.250	10.468	27	4	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--8	chr7:156746993	G	NA	39	0	39	66.718	8.192	0	0	0	39	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--GL	chr7:156746993	G	NA	36	0	36	67.917	7.165	0	0	0	36	0	NOM1(NM_138400:exon3:c.1308+1G>T)	splicing	NA
RCC_T6--1	chr7:157056479	T	A	61	0.098	54	58.648	13.138	6	37.167	2.041	54	6	UBE3C	intronic	NA
RCC_T6--2	chr7:157056479	T	NA	34	0	34	60.324	12.696	0	0	0	34	0	UBE3C	intronic	NA
RCC_T6--3	chr7:157056479	T	A	44	0.045	42	60.571	10.320	2	38.000	0.000	42	2	UBE3C	intronic	NA
RCC_T6--4	chr7:157056479	T	A	22	0.045	21	56.810	13.336	1	41.000	0.000	21	1	UBE3C	intronic	NA
RCC_T6--5	chr7:157056479	T	A	50	0.120	43	58.884	12.530	6	36.333	2.582	43	6	UBE3C	intronic	NA
RCC_T6--6	chr7:157056479	T	A	40	0.025	39	55.385	13.015	1	38.000	0.000	39	1	UBE3C	intronic	NA
RCC_T6--7	chr7:157056479	T	A	33	0.182	26	59.808	11.489	6	37.167	2.041	26	6	UBE3C	intronic	NA
RCC_T6--8	chr7:157056479	T	A	59	0.102	52	60.808	11.974	6	37.167	2.041	52	6	UBE3C	intronic	NA
RCC_T6--GL	chr7:157056479	T	NA	51	0	51	56.490	13.753	0	0	0	51	0	UBE3C	intronic	NA
RCC_T6--1	chr7:2409387	A	G	22	0.045	21	64.857	10.136	1	37.000	0.000	21	1	EIF3B	intronic	NA
RCC_T6--2	chr7:2409387	A	NA	17	0	17	70.235	1.640	0	0	0	17	0	EIF3B	intronic	NA
RCC_T6--3	chr7:2409387	A	NA	23	0	23	67.870	3.782	0	0	0	23	0	EIF3B	intronic	NA
RCC_T6--4	chr7:2409387	A	NA	18	0	18	66.722	3.232	0	0	0	18	0	EIF3B	intronic	NA
RCC_T6--5	chr7:2409387	A	G	20	0.100	18	67.667	3.272	2	35.000	2.828	18	2	EIF3B	intronic	NA
RCC_T6--6	chr7:2409387	A	G	16	0.125	14	64.143	9.510	2	33.000	0.000	14	2	EIF3B	intronic	NA
RCC_T6--7	chr7:2409387	A	G	17	0.118	15	68.333	3.177	2	33.000	0.000	15	2	EIF3B	intronic	NA
RCC_T6--8	chr7:2409387	A	G	20	0.250	15	68.333	3.994	5	42.600	16.891	15	5	EIF3B	intronic	NA
RCC_T6--GL	chr7:2409387	A	NA	34	0	34	63.794	10.362	0	0	0	34	0	EIF3B	intronic	NA
RCC_T6--1	chr7:2962219	C	NA	18	0	18	61.278	11.746	0	0	0	18	0	CARD11	intronic	NA
RCC_T6--2	chr7:2962219	C	NA	29	0	29	65.414	4.412	0	0	0	29	0	CARD11	intronic	NA
RCC_T6--3	chr7:2962219	C	NA	17	0	17	66.529	3.184	0	0	0	17	0	CARD11	intronic	NA
RCC_T6--4	chr7:2962219	C	NA	19	0	19	66.947	2.571	0	0	0	19	0	CARD11	intronic	NA
RCC_T6--5	chr7:2962219	C	NA	30	0	30	64.600	7.596	0	0	0	30	0	CARD11	intronic	NA
RCC_T6--6	chr7:2962219	C	NA	31	0	31	63.419	10.767	0	0	0	31	0	CARD11	intronic	NA
RCC_T6--7	chr7:2962219	C	NA	46	0	46	66.174	3.761	0	0	0	46	0	CARD11	intronic	NA
RCC_T6--8	chr7:2962219	C	A	36	0.111	32	62.938	10.883	4	62.250	4.992	32	4	CARD11	intronic	NA
RCC_T6--GL	chr7:2962219	C	NA	35	0	35	64.371	6.954	0	0	0	35	0	CARD11	intronic	NA
RCC_T6--1	chr7:56149836	T	C	11	0.182	9	67.333	3.317	2	68.500	3.536	9	2	PHKG1	intronic	NA
RCC_T6--2	chr7:56149836	T	NA	31	0	31	67.097	2.574	0	0	0	31	0	PHKG1	intronic	NA
RCC_T6--3	chr7:56149836	T	NA	30	0	30	66.600	4.328	0	0	0	30	0	PHKG1	intronic	NA
RCC_T6--4	chr7:56149836	T	NA	36	0	36	67.250	4.532	0	0	0	36	0	PHKG1	intronic	NA
RCC_T6--5	chr7:56149836	T	NA	32	0	32	63.594	8.969	0	0	0	32	0	PHKG1	intronic	NA
RCC_T6--6	chr7:56149836	T	NA	27	0	27	65.741	8.113	0	0	0	27	0	PHKG1	intronic	NA
RCC_T6--7	chr7:56149836	T	NA	36	0	36	66.889	5.481	0	0	0	36	0	PHKG1	intronic	NA
RCC_T6--8	chr7:56149836	T	NA	22	0	22	63.727	8.119	0	0	0	22	0	PHKG1	intronic	NA
RCC_T6--GL	chr7:56149836	T	NA	33	0	33	63.909	8.654	0	0	0	33	0	PHKG1	intronic	NA
RCC_T6--1	chr7:70251072	T	NA	23	0	23	65.652	8.060	0	0	0	23	0	AUTS2	intronic	NA
RCC_T6--2	chr7:70251072	T	NA	29	0	29	68.034	3.822	0	0	0	29	0	AUTS2	intronic	NA
RCC_T6--3	chr7:70251072	T	NA	29	0	29	67.207	3.144	0	0	0	29	0	AUTS2	intronic	NA
RCC_T6--4	chr7:70251072	T	NA	19	0	19	67.053	3.153	0	0	0	19	0	AUTS2	intronic	NA
RCC_T6--5	chr7:70251072	T	NA	25	0	25	65.880	8.059	0	0	0	25	0	AUTS2	intronic	NA
RCC_T6--6	chr7:70251072	T	NA	31	0	31	68.129	3.594	0	0	0	31	0	AUTS2	intronic	NA
RCC_T6--7	chr7:70251072	T	C	27	0.148	23	67.087	3.088	4	64.750	2.500	23	4	AUTS2	intronic	NA
RCC_T6--8	chr7:70251072	T	NA	44	0	44	68.205	4.061	0	0	0	44	0	AUTS2	intronic	NA
RCC_T6--GL	chr7:70251072	T	NA	35	0	35	66.257	7.469	0	0	0	35	0	AUTS2	intronic	NA
RCC_T6--1	chr7:7410457	C	NA	122	0	122	68.467	4.970	0	0	0	122	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--2	chr7:7410457	C	NA	119	0	118	68.873	4.140	0	0	0	118	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--3	chr7:7410457	C	NA	141	0	140	67.371	5.717	0	0	0	140	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--4	chr7:7410457	C	NA	134	0	134	67.299	5.793	0	0	0	134	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--5	chr7:7410457	C	NA	155	0	155	67.748	5.934	0	0	0	155	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--6	chr7:7410457	C	T	124	0.315	85	67.882	6.144	39	67.333	6.506	85	39	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--7	chr7:7410457	C	NA	117	0	117	67.906	4.678	0	0	0	117	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--8	chr7:7410457	C	T	139	0.007	138	67.899	5.017	1	72.000	0.000	138	1	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr7:7410457	C	NA	131	0	131	68.145	3.964	0	0	0	131	0	COL28A1	exonic	nonsynonymous_SNV
RCC_T6--1	chr7:97361750	C	NA	28	0	28	66.571	7.058	0	0	0	28	0	TAC1	intronic	NA
RCC_T6--2	chr7:97361750	C	NA	32	0	32	67.688	3.345	0	0	0	32	0	TAC1	intronic	NA
RCC_T6--3	chr7:97361750	C	NA	24	0	24	64.542	6.692	0	0	0	24	0	TAC1	intronic	NA
RCC_T6--4	chr7:97361750	C	NA	19	0	19	62.579	7.855	0	0	0	19	0	TAC1	intronic	NA
RCC_T6--5	chr7:97361750	C	NA	32	0	31	65.129	6.417	0	0	0	31	0	TAC1	intronic	NA
RCC_T6--6	chr7:97361750	C	T	40	0.375	25	65.880	7.732	15	64.400	8.331	25	15	TAC1	intronic	NA
RCC_T6--7	chr7:97361750	C	NA	29	0	29	65.966	6.138	0	0	0	29	0	TAC1	intronic	NA
RCC_T6--8	chr7:97361750	C	NA	36	0	36	67.444	5.332	0	0	0	36	0	TAC1	intronic	NA
RCC_T6--GL	chr7:97361750	C	NA	36	0	36	65.000	5.297	0	0	0	36	0	TAC1	intronic	NA
RCC_T6--1	chr7:99445906	C	NA	48	0	48	66.875	6.463	0	0	0	48	0	CYP3A43	intronic	NA
RCC_T6--2	chr7:99445906	C	NA	28	0	28	69.036	2.848	0	0	0	28	0	CYP3A43	intronic	NA
RCC_T6--3	chr7:99445906	C	NA	25	0	25	65.680	8.189	0	0	0	25	0	CYP3A43	intronic	NA
RCC_T6--4	chr7:99445906	C	NA	24	0	24	65.958	9.733	0	0	0	24	0	CYP3A43	intronic	NA
RCC_T6--5	chr7:99445906	C	A	31	0.129	27	66.148	6.965	4	70.500	2.380	27	4	CYP3A43	intronic	NA
RCC_T6--6	chr7:99445906	C	NA	36	0	36	67.778	4.237	0	0	0	36	0	CYP3A43	intronic	NA
RCC_T6--7	chr7:99445906	C	NA	38	0	38	67.816	3.805	0	0	0	38	0	CYP3A43	intronic	NA
RCC_T6--8	chr7:99445906	C	NA	31	0	31	68.645	3.592	0	0	0	31	0	CYP3A43	intronic	NA
RCC_T6--GL	chr7:99445906	C	NA	42	0	42	64.333	7.287	0	0	0	42	0	CYP3A43	intronic	NA
RCC_T6--1	chr7:99797096	G	NA	27	0	27	65.259	6.723	0	0	0	27	0	STAG3	intronic	NA
RCC_T6--2	chr7:99797096	G	T	35	0.114	31	66.613	7.098	4	64.250	5.852	31	4	STAG3	intronic	NA
RCC_T6--3	chr7:99797096	G	NA	26	0	26	65.192	9.662	0	0	0	26	0	STAG3	intronic	NA
RCC_T6--4	chr7:99797096	G	NA	40	0	40	65.200	7.050	0	0	0	40	0	STAG3	intronic	NA
RCC_T6--5	chr7:99797096	G	NA	39	0	39	67.103	6.727	0	0	0	39	0	STAG3	intronic	NA
RCC_T6--6	chr7:99797096	G	NA	27	0	27	65.407	5.507	0	0	0	27	0	STAG3	intronic	NA
RCC_T6--7	chr7:99797096	G	NA	34	0	34	65.000	9.720	0	0	0	34	0	STAG3	intronic	NA
RCC_T6--8	chr7:99797096	G	NA	47	0	47	65.000	5.741	0	0	0	47	0	STAG3	intronic	NA
RCC_T6--GL	chr7:99797096	G	NA	43	0	43	65.791	5.299	0	0	0	43	0	STAG3	intronic	NA
RCC_T6--1	chr8:100710288	C	NA	53	0	53	66.453	8.028	0	0	0	53	0	VPS13B	intronic	NA
RCC_T6--2	chr8:100710288	C	NA	48	0	48	67.708	5.271	0	0	0	48	0	VPS13B	intronic	NA
RCC_T6--3	chr8:100710288	C	NA	33	0	33	66.576	4.062	0	0	0	33	0	VPS13B	intronic	NA
RCC_T6--4	chr8:100710288	C	NA	29	0	29	66.448	7.390	0	0	0	29	0	VPS13B	intronic	NA
RCC_T6--5	chr8:100710288	C	NA	28	0	28	67.571	4.004	0	0	0	28	0	VPS13B	intronic	NA
RCC_T6--6	chr8:100710288	C	NA	27	0	27	64.037	8.281	0	0	0	27	0	VPS13B	intronic	NA
RCC_T6--7	chr8:100710288	C	NA	38	0	38	67.526	6.636	0	0	0	38	0	VPS13B	intronic	NA
RCC_T6--8	chr8:100710288	C	T	30	0.133	26	67.769	4.885	4	63.750	3.304	26	4	VPS13B	intronic	NA
RCC_T6--GL	chr8:100710288	C	NA	34	0	34	67.676	4.103	0	0	0	34	0	VPS13B	intronic	NA
RCC_T6--1	chr8:141570623	A	C	34	0.059	32	57.438	10.125	2	43.500	10.607	32	2	AGO2	intronic	NA
RCC_T6--2	chr8:141570623	A	C	49	0.020	48	55.438	11.939	1	43.000	0.000	48	1	AGO2	intronic	NA
RCC_T6--3	chr8:141570623	A	C	29	0.069	26	53.308	10.279	2	38.000	7.071	26	2	AGO2	intronic	NA
RCC_T6--4	chr8:141570623	A	C	40	0.025	39	53.949	12.226	1	36.000	0.000	39	1	AGO2	intronic	NA
RCC_T6--5	chr8:141570623	A	C	39	0.077	36	53.778	11.677	3	36.333	5.774	36	3	AGO2	intronic	NA
RCC_T6--6	chr8:141570623	A	C	32	0.031	31	55.645	10.468	1	36.000	0.000	31	1	AGO2	intronic	NA
RCC_T6--7	chr8:141570623	A	C	44	0.045	42	56.024	10.810	2	36.000	0.000	42	2	AGO2	intronic	NA
RCC_T6--8	chr8:141570623	A	C	18	0.278	13	54.769	9.859	5	34.800	1.643	13	5	AGO2	intronic	NA
RCC_T6--GL	chr8:141570623	A	NA	33	0	33	52.788	11.338	0	0	0	33	0	AGO2	intronic	NA
RCC_T6--1	chr8:27312121	G	NA	21	0	21	67.095	5.726	0	0	0	21	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--2	chr8:27312121	G	T	29	0.138	25	66.760	7.907	4	64.250	2.986	25	4	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--3	chr8:27312121	G	NA	28	0	28	64.429	9.609	0	0	0	28	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--4	chr8:27312121	G	NA	37	0	37	64.324	8.882	0	0	0	37	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--5	chr8:27312121	G	NA	22	0	22	68.273	3.254	0	0	0	22	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--6	chr8:27312121	G	NA	21	0	21	66.429	4.556	0	0	0	21	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--7	chr8:27312121	G	NA	44	0	44	65.705	7.867	0	0	0	44	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--8	chr8:27312121	G	NA	40	0	40	66.175	6.759	0	0	0	40	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--GL	chr8:27312121	G	NA	34	0	34	67.412	6.814	0	0	0	34	0	PTK2B	exonic	nonsynonymous_SNV
RCC_T6--1	chr8:36671740	G	NA	240	0	239	66.828	6.729	0	0	0	239	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--2	chr8:36671740	G	NA	257	0	257	67.875	5.057	0	0	0	257	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--3	chr8:36671740	G	T	245	0.004	244	67.340	5.748	1	68.000	0.000	244	1	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--4	chr8:36671740	G	NA	266	0	266	66.650	6.688	0	0	0	266	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--5	chr8:36671740	G	NA	270	0	270	67.026	6.676	0	0	0	270	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--6	chr8:36671740	G	T	172	0.343	112	65.643	8.200	59	66.424	7.713	112	59	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--7	chr8:36671740	G	NA	277	0	277	67.697	4.937	0	0	0	277	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--8	chr8:36671740	G	NA	301	0	301	67.731	4.608	0	0	0	301	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr8:36671740	G	NA	250	0	250	66.940	5.112	0	0	0	250	0	KCNU1	exonic	nonsynonymous_SNV
RCC_T6--1	chr8:38003466	T	G	30	0.167	25	61.640	8.431	5	58.000	15.248	25	5	STAR	intronic	NA
RCC_T6--2	chr8:38003466	T	NA	24	0	24	63.125	5.766	0	0	0	24	0	STAR	intronic	NA
RCC_T6--3	chr8:38003466	T	G	35	0.029	34	64.294	8.376	1	33.000	0.000	34	1	STAR	intronic	NA
RCC_T6--4	chr8:38003466	T	NA	39	0	39	63.846	8.412	0	0	0	39	0	STAR	intronic	NA
RCC_T6--5	chr8:38003466	T	G	56	0.018	55	64.073	6.248	1	33.000	0.000	55	1	STAR	intronic	NA
RCC_T6--6	chr8:38003466	T	NA	31	0	31	63.290	6.827	0	0	0	31	0	STAR	intronic	NA
RCC_T6--7	chr8:38003466	T	NA	51	0	51	66.118	3.380	0	0	0	51	0	STAR	intronic	NA
RCC_T6--8	chr8:38003466	T	NA	37	0	37	63.432	7.351	0	0	0	37	0	STAR	intronic	NA
RCC_T6--GL	chr8:38003466	T	NA	35	0	35	64.943	3.985	0	0	0	35	0	STAR	intronic	NA
RCC_T6--1	chr8:41394689	C	NA	40	0	40	69.300	3.082	0	0	0	40	0	GINS4	intronic	NA
RCC_T6--2	chr8:41394689	C	NA	40	0	40	67.925	6.941	0	0	0	40	0	GINS4	intronic	NA
RCC_T6--3	chr8:41394689	C	NA	31	0	31	68.419	2.814	0	0	0	31	0	GINS4	intronic	NA
RCC_T6--4	chr8:41394689	C	NA	51	0	51	67.510	5.085	0	0	0	51	0	GINS4	intronic	NA
RCC_T6--5	chr8:41394689	C	NA	35	0	35	67.629	3.941	0	0	0	35	0	GINS4	intronic	NA
RCC_T6--6	chr8:41394689	C	A	21	0.048	20	67.600	5.871	1	33.000	0.000	20	1	GINS4	intronic	NA
RCC_T6--7	chr8:41394689	C	NA	62	0	62	68.242	3.327	0	0	0	62	0	GINS4	intronic	NA
RCC_T6--8	chr8:41394689	C	A	32	0.125	28	68.000	4.530	4	66.750	0.500	28	4	GINS4	intronic	NA
RCC_T6--GL	chr8:41394689	C	NA	40	0	40	66.400	7.372	0	0	0	40	0	GINS4	intronic	NA
RCC_T6--1	chr8:55537447	G	C	182	0.132	158	68.854	3.827	24	70.375	2.551	158	24	RP1	exonic	nonsynonymous_SNV
RCC_T6--2	chr8:55537447	G	C	192	0.094	174	68.310	5.410	18	68.222	4.305	174	18	RP1	exonic	nonsynonymous_SNV
RCC_T6--3	chr8:55537447	G	C	138	0.065	129	67.395	5.153	9	70.667	1.414	129	9	RP1	exonic	nonsynonymous_SNV
RCC_T6--4	chr8:55537447	G	C	144	0.076	133	68.045	4.661	11	68.636	4.202	133	11	RP1	exonic	nonsynonymous_SNV
RCC_T6--5	chr8:55537447	G	C	144	0.076	133	67.579	6.926	11	63.727	13.828	133	11	RP1	exonic	nonsynonymous_SNV
RCC_T6--6	chr8:55537447	G	C	141	0.504	70	68.714	3.971	71	66.901	8.968	70	71	RP1	exonic	nonsynonymous_SNV
RCC_T6--7	chr8:55537447	G	C	148	0.014	146	68.541	4.466	2	68.000	0.000	146	2	RP1	exonic	nonsynonymous_SNV
RCC_T6--8	chr8:55537447	G	C	137	0.219	107	68.178	6.034	30	68.133	6.345	107	30	RP1	exonic	nonsynonymous_SNV
RCC_T6--GL	chr8:55537447	G	NA	137	0	137	67.693	5.956	0	0	0	137	0	RP1	exonic	nonsynonymous_SNV
RCC_T6--1	chr8:6914277	A	G	28	0.143	24	65.792	7.890	4	68.000	4.243	24	4	DEFA5	upstream	NA
RCC_T6--2	chr8:6914277	A	NA	24	0	24	64.333	9.761	0	0	0	24	0	DEFA5	upstream	NA
RCC_T6--3	chr8:6914277	A	NA	10	0	10	66.200	5.633	0	0	0	10	0	DEFA5	upstream	NA
RCC_T6--4	chr8:6914277	A	NA	23	0	23	65.522	7.360	0	0	0	23	0	DEFA5	upstream	NA
RCC_T6--5	chr8:6914277	A	NA	30	0	30	66.233	6.191	0	0	0	30	0	DEFA5	upstream	NA
RCC_T6--6	chr8:6914277	A	NA	25	0	25	67.200	4.822	0	0	0	25	0	DEFA5	upstream	NA
RCC_T6--7	chr8:6914277	A	NA	21	0	21	67.762	8.324	0	0	0	21	0	DEFA5	upstream	NA
RCC_T6--8	chr8:6914277	A	NA	27	0	27	67.222	5.147	0	0	0	27	0	DEFA5	upstream	NA
RCC_T6--GL	chr8:6914277	A	NA	38	0	38	65.500	7.292	0	0	0	38	0	DEFA5	upstream	NA
RCC_T6--1	chr8:74859128	C	NA	56	0	56	68.768	5.781	0	0	0	56	0	TCEB1	intronic	NA
RCC_T6--2	chr8:74859128	C	NA	43	0	43	67.907	5.567	0	0	0	43	0	TCEB1	intronic	NA
RCC_T6--3	chr8:74859128	C	NA	30	0	30	67.733	7.139	0	0	0	30	0	TCEB1	intronic	NA
RCC_T6--4	chr8:74859128	C	NA	25	0	25	69.920	2.448	0	0	0	25	0	TCEB1	intronic	NA
RCC_T6--5	chr8:74859128	C	NA	50	0	50	67.700	8.519	0	0	0	50	0	TCEB1	intronic	NA
RCC_T6--6	chr8:74859128	C	A	27	0.333	18	70.278	2.347	9	63.333	4.500	18	9	TCEB1	intronic	NA
RCC_T6--7	chr8:74859128	C	NA	35	0	35	69.200	3.376	0	0	0	35	0	TCEB1	intronic	NA
RCC_T6--8	chr8:74859128	C	A	31	0.032	30	67.500	5.204	1	67.000	0.000	30	1	TCEB1	intronic	NA
RCC_T6--GL	chr8:74859128	C	NA	36	0	36	67.139	6.473	0	0	0	36	0	TCEB1	intronic	NA
RCC_T6--1	chr9:130489333	C	A	29	0.138	24	61.958	9.769	4	65.000	0.816	24	4	TTC16	exonic	nonsynonymous_SNV
RCC_T6--2	chr9:130489333	C	NA	40	0	40	63.600	10.419	0	0	0	40	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--3	chr9:130489333	C	NA	43	0	43	63.744	9.830	0	0	0	43	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--4	chr9:130489333	C	NA	27	0	27	62.630	10.304	0	0	0	27	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--5	chr9:130489333	C	NA	41	0	41	60.927	10.813	0	0	0	41	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--6	chr9:130489333	C	NA	30	0	30	64.333	8.766	0	0	0	30	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--7	chr9:130489333	C	NA	35	0	35	63.829	10.888	0	0	0	35	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--8	chr9:130489333	C	NA	43	0	43	63.442	10.053	0	0	0	43	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--GL	chr9:130489333	C	NA	35	0	35	62.886	11.955	0	0	0	35	0	TTC16	exonic	nonsynonymous_SNV
RCC_T6--1	chr9:130536509	T	NA	22	0	22	66.773	6.414	0	0	0	22	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--2	chr9:130536509	T	NA	15	0	15	66.800	4.523	0	0	0	15	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--3	chr9:130536509	T	NA	18	0	18	64.389	5.751	0	0	0	18	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--4	chr9:130536509	T	NA	26	0	26	64.885	8.524	0	0	0	26	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--5	chr9:130536509	T	NA	19	0	19	64.526	7.313	0	0	0	19	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--6	chr9:130536509	T	NA	27	0	27	62.481	12.305	0	0	0	27	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--7	chr9:130536509	T	C	27	0.148	23	67.435	3.462	4	69.000	3.464	23	4	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--8	chr9:130536509	T	NA	14	0	14	66.357	3.500	0	0	0	14	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--GL	chr9:130536509	T	NA	34	0	34	65.647	6.295	0	0	0	34	0	SH2D3C	exonic	nonsynonymous_SNV
RCC_T6--1	chr9:130980827	C	T	34	0.118	30	64.900	4.566	4	67.000	3.162	30	4	DNM1	intronic	NA
RCC_T6--2	chr9:130980827	C	NA	37	0	37	66.676	4.184	0	0	0	37	0	DNM1	intronic	NA
RCC_T6--3	chr9:130980827	C	NA	29	0	29	63.759	8.463	0	0	0	29	0	DNM1	intronic	NA
RCC_T6--4	chr9:130980827	C	NA	43	0	43	65.721	4.920	0	0	0	43	0	DNM1	intronic	NA
RCC_T6--5	chr9:130980827	C	NA	51	0	50	63.660	9.328	0	0	0	50	0	DNM1	intronic	NA
RCC_T6--6	chr9:130980827	C	NA	31	0	31	64.581	5.920	0	0	0	31	0	DNM1	intronic	NA
RCC_T6--7	chr9:130980827	C	NA	44	0	44	65.659	6.100	0	0	0	44	0	DNM1	intronic	NA
RCC_T6--8	chr9:130980827	C	NA	39	0	39	65.846	4.416	0	0	0	39	0	DNM1	intronic	NA
RCC_T6--GL	chr9:130980827	C	NA	56	0	56	65.071	6.223	0	0	0	56	0	DNM1	intronic	NA
RCC_T6--1	chr9:135073998	T	G	20	0.100	18	62.222	12.707	2	42.000	12.728	18	2	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--2	chr9:135073998	T	G	29	0.034	28	61.429	12.545	1	33.000	0.000	28	1	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--3	chr9:135073998	T	G	30	0.167	25	63.040	10.671	5	42.200	9.338	25	5	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--4	chr9:135073998	T	G	51	0.176	42	62.810	9.818	9	34.667	2.000	42	9	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--5	chr9:135073998	T	G	19	0.316	13	66.538	5.379	6	37.500	4.806	13	6	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--6	chr9:135073998	T	NA	25	0	25	64.960	8.696	0	0	0	25	0	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--7	chr9:135073998	T	G	29	0.103	26	61.731	12.802	3	35.667	2.309	26	3	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--8	chr9:135073998	T	G	20	0.250	15	63.800	12.684	5	42.800	7.887	15	5	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--GL	chr9:135073998	T	NA	43	0	43	64.395	9.943	0	0	0	43	0	NTNG2(NM_032536:exon3:c.857+2T>G)	splicing	NA
RCC_T6--1	chr9:136277903	G	NA	33	0	33	66.697	7.752	0	0	0	33	0	REXO4	exonic	synonymous_SNV
RCC_T6--2	chr9:136277903	G	NA	37	0	37	66.432	6.230	0	0	0	37	0	REXO4	exonic	synonymous_SNV
RCC_T6--3	chr9:136277903	G	NA	38	0	38	66.684	6.169	0	0	0	38	0	REXO4	exonic	synonymous_SNV
RCC_T6--4	chr9:136277903	G	NA	48	0	48	64.729	6.467	0	0	0	48	0	REXO4	exonic	synonymous_SNV
RCC_T6--5	chr9:136277903	G	NA	42	0	42	65.976	4.348	0	0	0	42	0	REXO4	exonic	synonymous_SNV
RCC_T6--6	chr9:136277903	G	NA	42	0	42	65.167	7.512	0	0	0	42	0	REXO4	exonic	synonymous_SNV
RCC_T6--7	chr9:136277903	G	NA	80	0	80	65.412	5.923	0	0	0	80	0	REXO4	exonic	synonymous_SNV
RCC_T6--8	chr9:136277903	G	A	36	0.111	32	67.969	3.277	4	68.250	2.872	32	4	REXO4	exonic	synonymous_SNV
RCC_T6--GL	chr9:136277903	G	NA	44	0	44	62.727	9.015	0	0	0	44	0	REXO4	exonic	synonymous_SNV
RCC_T6--1	chr9:137713881	T	G	27	0.074	25	52.880	10.651	2	43.500	14.849	25	2	LOC101448202	ncRNA_intronic	NA
RCC_T6--2	chr9:137713881	T	G	38	0.105	34	57.735	9.096	4	35.250	1.500	34	4	LOC101448202	ncRNA_intronic	NA
RCC_T6--3	chr9:137713881	T	G	35	0.029	34	54.118	11.053	1	37.000	0.000	34	1	LOC101448202	ncRNA_intronic	NA
RCC_T6--4	chr9:137713881	T	NA	30	0	29	54.552	10.169	0	0	0	29	0	LOC101448202	ncRNA_intronic	NA
RCC_T6--5	chr9:137713881	T	G	39	0.051	37	54.081	12.171	2	35.000	2.828	37	2	LOC101448202	ncRNA_intronic	NA
RCC_T6--6	chr9:137713881	T	G	32	0.125	28	56.500	11.660	4	35.500	1.732	28	4	LOC101448202	ncRNA_intronic	NA
RCC_T6--7	chr9:137713881	T	G	25	0.200	19	55.316	12.863	5	39.000	4.899	19	5	LOC101448202	ncRNA_intronic	NA
RCC_T6--8	chr9:137713881	T	G	29	0.103	26	56.308	11.221	3	35.000	1.732	26	3	LOC101448202	ncRNA_intronic	NA
RCC_T6--GL	chr9:137713881	T	NA	33	0	33	58.758	9.474	0	0	0	33	0	LOC101448202	ncRNA_intronic	NA
RCC_T6--1	chr9:139820188	C	NA	46	0	46	66.457	6.869	0	0	0	46	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--2	chr9:139820188	C	NA	51	0	51	65.843	8.320	0	0	0	51	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--3	chr9:139820188	C	NA	41	0	41	65.683	7.856	0	0	0	41	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--4	chr9:139820188	C	NA	67	0	67	64.687	9.339	0	0	0	67	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--5	chr9:139820188	C	NA	59	0	59	65.966	5.945	0	0	0	59	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--6	chr9:139820188	C	NA	54	0	54	64.556	9.864	0	0	0	54	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--7	chr9:139820188	C	NA	93	0	93	66.312	6.248	0	0	0	93	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--8	chr9:139820188	C	A	44	0.114	39	68.308	3.404	5	67.000	6.782	39	5	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--GL	chr9:139820188	C	NA	53	0	53	63.415	10.480	0	0	0	53	0	TRAF2	exonic	nonsynonymous_SNV
RCC_T6--1	chr9:14041245	G	NA	46	0	46	68.478	6.203	0	0	0	46	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--2	chr9:14041245	G	A	35	0.114	31	67.097	4.812	4	68.250	3.862	31	4	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--3	chr9:14041245	G	NA	32	0	32	67.750	5.941	0	0	0	32	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--4	chr9:14041245	G	NA	40	0	40	68.800	2.821	0	0	0	40	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--5	chr9:14041245	G	NA	47	0	47	68.638	4.627	0	0	0	47	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--6	chr9:14041245	G	NA	39	0	39	67.333	7.634	0	0	0	39	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--7	chr9:14041245	G	NA	54	0	54	68.611	3.236	0	0	0	54	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--8	chr9:14041245	G	NA	38	0	38	69.132	3.112	0	0	0	38	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--GL	chr9:14041245	G	NA	38	0	38	67.658	6.385	0	0	0	38	0	LINC00583(dist=95639),NFIB(dist=40597)	intergenic	NA
RCC_T6--1	chr9:30774169	C	A	44	0.114	39	67.000	7.123	5	65.600	3.912	39	5	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--2	chr9:30774169	C	NA	44	0	44	67.636	5.388	0	0	0	44	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--3	chr9:30774169	C	NA	37	0	37	67.081	4.912	0	0	0	37	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--4	chr9:30774169	C	NA	45	0	45	68.644	3.227	0	0	0	45	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--5	chr9:30774169	C	NA	38	0	38	64.632	10.997	0	0	0	38	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--6	chr9:30774169	C	NA	48	0	48	65.979	8.586	0	0	0	48	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--7	chr9:30774169	C	NA	34	0	34	67.647	6.208	0	0	0	34	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--8	chr9:30774169	C	NA	39	0	39	66.436	6.935	0	0	0	39	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--GL	chr9:30774169	C	NA	38	0	38	66.947	6.510	0	0	0	38	0	LOC401497(dist=365717),ACO1(dist=1610432)	intergenic	NA
RCC_T6--1	chr9:32431681	A	NA	103	0	103	67.282	5.917	0	0	0	103	0	ACO1	intronic	NA
RCC_T6--2	chr9:32431681	A	NA	77	0	75	68.920	3.229	0	0	0	75	0	ACO1	intronic	NA
RCC_T6--3	chr9:32431681	A	NA	102	0	102	67.784	5.702	0	0	0	102	0	ACO1	intronic	NA
RCC_T6--4	chr9:32431681	A	NA	100	0	100	67.410	4.472	0	0	0	100	0	ACO1	intronic	NA
RCC_T6--5	chr9:32431681	A	NA	73	0	73	67.137	6.494	0	0	0	73	0	ACO1	intronic	NA
RCC_T6--6	chr9:32431681	A	G	100	0.290	70	66.986	6.147	29	67.931	3.644	70	29	ACO1	intronic	NA
RCC_T6--7	chr9:32431681	A	NA	109	0	109	67.881	3.731	0	0	0	109	0	ACO1	intronic	NA
RCC_T6--8	chr9:32431681	A	NA	109	0	109	68.092	4.218	0	0	0	109	0	ACO1	intronic	NA
RCC_T6--GL	chr9:32431681	A	NA	85	0	85	67.812	4.463	0	0	0	85	0	ACO1	intronic	NA
RCC_T6--1	chr9:371472	A	T	129	0.140	110	67.609	5.928	18	65.278	10.369	110	18	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--2	chr9:371472	A	T	181	0.099	163	66.951	7.177	18	67.778	4.387	163	18	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--3	chr9:371472	A	T	122	0.139	105	65.010	8.189	17	67.235	5.321	105	17	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--4	chr9:371472	A	T	142	0.014	140	66.300	6.673	2	65.500	0.707	140	2	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--5	chr9:371472	A	T	133	0.045	127	66.961	6.192	6	69.333	2.658	127	6	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--6	chr9:371472	A	T	125	0.304	86	67.616	4.856	38	67.526	6.943	86	38	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--7	chr9:371472	A	T	183	0.055	173	67.775	5.166	10	68.300	3.653	173	10	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--8	chr9:371472	A	T	165	0.012	163	66.712	6.669	2	70.000	1.414	163	2	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--GL	chr9:371472	A	NA	115	0	115	66.904	7.415	0	0	0	115	0	DOCK8	exonic	nonsynonymous_SNV
RCC_T6--1	chr9:91994552	A	NA	116	0	116	67.810	4.784	0	0	0	116	0	SEMA4D	intronic	NA
RCC_T6--2	chr9:91994552	A	NA	112	0	112	67.295	6.139	0	0	0	112	0	SEMA4D	intronic	NA
RCC_T6--3	chr9:91994552	A	NA	92	0	92	66.337	6.998	0	0	0	92	0	SEMA4D	intronic	NA
RCC_T6--4	chr9:91994552	A	NA	93	0	93	67.269	5.282	0	0	0	93	0	SEMA4D	intronic	NA
RCC_T6--5	chr9:91994552	A	NA	140	0	140	67.271	5.730	0	0	0	140	0	SEMA4D	intronic	NA
RCC_T6--6	chr9:91994552	A	C	107	0.280	77	66.377	6.649	30	67.333	4.130	77	30	SEMA4D	intronic	NA
RCC_T6--7	chr9:91994552	A	NA	157	0	157	68.083	4.741	0	0	0	157	0	SEMA4D	intronic	NA
RCC_T6--8	chr9:91994552	A	NA	103	0	103	67.583	4.447	0	0	0	103	0	SEMA4D	intronic	NA
RCC_T6--GL	chr9:91994552	A	NA	97	0	97	66.649	5.890	0	0	0	97	0	SEMA4D	intronic	NA
RCC_T6--1	chr9:95397609	G	NA	33	0	33	65.939	6.230	0	0	0	33	0	IPPK	intronic	NA
RCC_T6--2	chr9:95397609	G	A	19	0.211	15	65.133	4.627	4	64.500	7.937	15	4	IPPK	intronic	NA
RCC_T6--3	chr9:95397609	G	NA	36	0	36	66.833	6.300	0	0	0	36	0	IPPK	intronic	NA
RCC_T6--4	chr9:95397609	G	NA	42	0	42	64.571	7.089	0	0	0	42	0	IPPK	intronic	NA
RCC_T6--5	chr9:95397609	G	NA	29	0	29	66.138	5.655	0	0	0	29	0	IPPK	intronic	NA
RCC_T6--6	chr9:95397609	G	A	35	0.029	34	64.941	8.257	1	39.000	0.000	34	1	IPPK	intronic	NA
RCC_T6--7	chr9:95397609	G	NA	42	0	42	64.476	7.422	0	0	0	42	0	IPPK	intronic	NA
RCC_T6--8	chr9:95397609	G	NA	29	0	29	66.172	6.036	0	0	0	29	0	IPPK	intronic	NA
RCC_T6--GL	chr9:95397609	G	NA	35	0	35	66.514	4.442	0	0	0	35	0	IPPK	intronic	NA
RCC_T6--1	chrX:100143310	A	NA	171	0	171	68.415	5.038	0	0	0	171	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--2	chrX:100143310	A	NA	192	0	192	66.677	6.353	0	0	0	192	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--3	chrX:100143310	A	NA	119	0	119	65.672	7.112	0	0	0	119	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--4	chrX:100143310	A	NA	168	0	168	66.839	6.198	0	0	0	168	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--5	chrX:100143310	A	NA	149	0	148	67.392	6.702	0	0	0	148	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--6	chrX:100143310	A	T	117	0.265	86	67.535	4.865	31	67.129	3.566	86	31	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--7	chrX:100143310	A	NA	142	0	142	66.345	6.370	0	0	0	142	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--8	chrX:100143310	A	NA	167	0	167	67.737	5.214	0	0	0	167	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--GL	chrX:100143310	A	NA	125	0	125	67.096	5.663	0	0	0	125	0	NOX1(dist=13976),XKRX(dist=25121)	intergenic	NA
RCC_T6--1	chrX:102342761	C	NA	83	0	83	68.735	5.308	0	0	0	83	0	NXF3	intronic	NA
RCC_T6--2	chrX:102342761	C	NA	76	0	76	68.250	5.982	0	0	0	76	0	NXF3	intronic	NA
RCC_T6--3	chrX:102342761	C	NA	50	0	50	68.600	3.790	0	0	0	50	0	NXF3	intronic	NA
RCC_T6--4	chrX:102342761	C	NA	49	0	49	67.837	4.997	0	0	0	49	0	NXF3	intronic	NA
RCC_T6--5	chrX:102342761	C	NA	74	0	74	68.338	5.734	0	0	0	74	0	NXF3	intronic	NA
RCC_T6--6	chrX:102342761	C	A	57	0.281	41	67.585	6.070	16	69.562	3.633	41	16	NXF3	intronic	NA
RCC_T6--7	chrX:102342761	C	NA	53	0	53	68.962	4.645	0	0	0	53	0	NXF3	intronic	NA
RCC_T6--8	chrX:102342761	C	NA	72	0	72	68.417	4.605	0	0	0	72	0	NXF3	intronic	NA
RCC_T6--GL	chrX:102342761	C	NA	94	0	94	68.447	3.746	0	0	0	94	0	NXF3	intronic	NA
RCC_T6--1	chrX:117043960	G	A	232	0.004	231	67.030	5.814	1	33.000	0.000	231	1	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--2	chrX:117043960	G	NA	261	0	261	67.398	4.802	0	0	0	261	0	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--3	chrX:117043960	G	A	255	0.047	243	66.477	6.246	12	65.417	10.587	243	12	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--4	chrX:117043960	G	A	198	0.081	182	65.995	6.706	16	65.938	6.836	182	16	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--5	chrX:117043960	G	NA	236	0	236	66.746	5.787	0	0	0	236	0	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--6	chrX:117043960	G	NA	267	0	267	65.213	6.811	0	0	0	267	0	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--7	chrX:117043960	G	A	263	0.008	260	66.177	6.099	2	46.000	11.314	260	2	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--8	chrX:117043960	G	A	280	0.211	221	67.262	4.943	59	69.373	2.797	221	59	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--GL	chrX:117043960	G	NA	231	0	231	67.312	4.346	0	0	0	231	0	KLHL13	exonic	nonsynonymous_SNV
RCC_T6--1	chrX:151909383	A	T	39	0.128	34	68.176	3.494	5	58.600	14.433	34	5	CSAG1	UTR3	NA
RCC_T6--2	chrX:151909383	A	NA	59	0	59	66.780	6.449	0	0	0	59	0	CSAG1	UTR3	NA
RCC_T6--3	chrX:151909383	A	NA	33	0	33	65.273	8.334	0	0	0	33	0	CSAG1	UTR3	NA
RCC_T6--4	chrX:151909383	A	NA	50	0	50	67.460	5.183	0	0	0	50	0	CSAG1	UTR3	NA
RCC_T6--5	chrX:151909383	A	NA	43	0	43	66.395	5.733	0	0	0	43	0	CSAG1	UTR3	NA
RCC_T6--6	chrX:151909383	A	NA	38	0	38	67.211	7.662	0	0	0	38	0	CSAG1	UTR3	NA
RCC_T6--7	chrX:151909383	A	NA	40	0	40	68.050	5.773	0	0	0	40	0	CSAG1	UTR3	NA
RCC_T6--8	chrX:151909383	A	NA	51	0	51	67.235	5.595	0	0	0	51	0	CSAG1	UTR3	NA
RCC_T6--GL	chrX:151909383	A	NA	44	0	44	67.341	5.481	0	0	0	44	0	CSAG1	UTR3	NA
RCC_T6--1	chrX:154156768	C	NA	18	0	18	68.000	4.116	0	0	0	18	0	F8	intronic	NA
RCC_T6--2	chrX:154156768	C	NA	26	0	26	67.885	5.102	0	0	0	26	0	F8	intronic	NA
RCC_T6--3	chrX:154156768	C	NA	21	0	21	68.571	3.854	0	0	0	21	0	F8	intronic	NA
RCC_T6--4	chrX:154156768	C	NA	27	0	27	69.000	3.317	0	0	0	27	0	F8	intronic	NA
RCC_T6--5	chrX:154156768	C	A	34	0.118	30	67.967	7.379	4	68.500	1.000	30	4	F8	intronic	NA
RCC_T6--6	chrX:154156768	C	NA	20	0	20	67.950	4.548	0	0	0	20	0	F8	intronic	NA
RCC_T6--7	chrX:154156768	C	NA	27	0	27	69.519	3.068	0	0	0	27	0	F8	intronic	NA
RCC_T6--8	chrX:154156768	C	NA	35	0	35	69.114	3.825	0	0	0	35	0	F8	intronic	NA
RCC_T6--GL	chrX:154156768	C	NA	33	0	33	69.000	4.528	0	0	0	33	0	F8	intronic	NA
RCC_T6--1	chrX:26212006	C	NA	86	0	86	67.674	3.418	0	0	0	86	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--2	chrX:26212006	C	NA	80	0	80	66.750	6.592	0	0	0	80	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--3	chrX:26212006	C	NA	77	0	77	65.377	9.067	0	0	0	77	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--4	chrX:26212006	C	NA	85	0	85	65.694	6.866	0	0	0	85	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--5	chrX:26212006	C	NA	88	0	88	66.511	5.758	0	0	0	88	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--6	chrX:26212006	C	T	61	0.393	37	68.378	3.818	24	62.500	10.112	37	24	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--7	chrX:26212006	C	NA	117	0	117	66.009	6.759	0	0	0	117	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--8	chrX:26212006	C	T	57	0.018	56	66.679	5.046	1	70.000	0.000	56	1	MAGEB6	exonic	nonsynonymous_SNV
RCC_T6--GL	chrX:26212006	C	NA	86	0	86	64.523	8.415	0	0	0	86	0	MAGEB6	exonic	nonsynonymous_SNV
RCC_T7--10	chr10:35495858	G	NA	62	0	61	35.869	7.582	0	0	0	57	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--11	chr10:35495858	G	T	45	0.089	41	33.585	10.435	4	35.250	4.500	34	4	CREM	exonic	nonsynonymous_SNV
RCC_T7--1	chr10:35495858	G	T	53	0.208	42	35.762	5.582	11	38.455	2.252	39	11	CREM	exonic	nonsynonymous_SNV
RCC_T7--2	chr10:35495858	G	NA	45	0	45	35.844	8.073	0	0	0	39	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--3	chr10:35495858	G	NA	63	0	63	35.889	6.621	0	0	0	58	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--4	chr10:35495858	G	NA	51	0	51	34.961	7.499	0	0	0	47	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--5	chr10:35495858	G	NA	67	0	67	34.776	8.831	0	0	0	60	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--6	chr10:35495858	G	NA	49	0	49	35.306	7.837	0	0	0	45	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--7	chr10:35495858	G	T	47	0.021	46	36.391	6.482	1	40.000	0.000	42	1	CREM	exonic	nonsynonymous_SNV
RCC_T7--8	chr10:35495858	G	NA	57	0	57	36.474	6.009	0	0	0	54	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--9	chr10:35495858	G	NA	40	0	40	35.800	6.817	0	0	0	36	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--GL	chr10:35495858	G	NA	62	0	61	33.508	10.350	0	0	0	51	0	CREM	exonic	nonsynonymous_SNV
RCC_T7--10	chr10:48416324	G	A	94	0.021	92	34.000	7.993	2	35.500	0.707	81	2	GDF2	intronic	NA
RCC_T7--11	chr10:48416324	G	NA	82	0	81	34.815	6.293	0	0	0	75	0	GDF2	intronic	NA
RCC_T7--1	chr10:48416324	G	NA	67	0	65	33.738	8.892	0	0	0	55	0	GDF2	intronic	NA
RCC_T7--2	chr10:48416324	G	NA	71	0	71	35.211	5.644	0	0	0	65	0	GDF2	intronic	NA
RCC_T7--3	chr10:48416324	G	A	81	0.185	66	34.045	7.675	15	32.200	9.541	60	12	GDF2	intronic	NA
RCC_T7--4	chr10:48416324	G	A	79	0.165	66	33.091	8.621	13	35.692	4.479	54	12	GDF2	intronic	NA
RCC_T7--5	chr10:48416324	G	A	97	0.103	87	33.322	8.782	10	37.500	3.866	75	9	GDF2	intronic	NA
RCC_T7--6	chr10:48416324	G	A	85	0.153	70	34.186	7.955	13	29.231	13.785	62	8	GDF2	intronic	NA
RCC_T7--7	chr10:48416324	G	NA	77	0	77	32.883	9.745	0	0	0	63	0	GDF2	intronic	NA
RCC_T7--8	chr10:48416324	G	NA	98	0	97	33.258	8.743	0	0	0	82	0	GDF2	intronic	NA
RCC_T7--9	chr10:48416324	G	NA	90	0	90	33.911	7.706	0	0	0	79	0	GDF2	intronic	NA
RCC_T7--GL	chr10:48416324	G	NA	85	0	85	34.294	8.049	0	0	0	76	0	GDF2	intronic	NA
RCC_T7--10	chr10:97369899	G	C	270	0.178	222	36.423	5.334	48	35.208	6.102	208	45	ALDH18A1	intronic	NA
RCC_T7--11	chr10:97369899	G	C	242	0.157	204	34.083	8.629	38	34.263	7.202	179	33	ALDH18A1	intronic	NA
RCC_T7--1	chr10:97369899	G	C	248	0.173	203	34.724	8.059	43	35.907	4.790	183	38	ALDH18A1	intronic	NA
RCC_T7--2	chr10:97369899	G	C	230	0.183	188	33.803	9.077	42	34.833	6.552	167	38	ALDH18A1	intronic	NA
RCC_T7--3	chr10:97369899	G	C	306	0.225	236	33.877	8.482	69	34.638	7.612	209	62	ALDH18A1	intronic	NA
RCC_T7--4	chr10:97369899	G	C	276	0.163	229	35.122	6.917	45	32.956	8.626	207	40	ALDH18A1	intronic	NA
RCC_T7--5	chr10:97369899	G	C	338	0.139	291	34.478	7.748	47	35.191	6.351	255	43	ALDH18A1	intronic	NA
RCC_T7--6	chr10:97369899	G	C	257	0.183	209	35.177	7.223	47	34.319	8.100	186	41	ALDH18A1	intronic	NA
RCC_T7--7	chr10:97369899	G	C	290	0.155	243	35.354	6.389	45	35.578	4.042	214	42	ALDH18A1	intronic	NA
RCC_T7--8	chr10:97369899	G	C	236	0.114	208	35.029	6.902	27	36.741	3.230	191	27	ALDH18A1	intronic	NA
RCC_T7--9	chr10:97369899	G	C	240	0.079	221	34.778	7.070	19	32.474	11.365	197	17	ALDH18A1	intronic	NA
RCC_T7--GL	chr10:97369899	G	NA	307	0	306	35.458	6.191	0	0	0	277	0	ALDH18A1	intronic	NA
RCC_T7--10	chr11:117790432	C	T	47	0.170	39	35.974	5.896	8	37.250	2.550	37	8	TMPRSS13	intronic	NA
RCC_T7--11	chr11:117790432	C	NA	41	0	41	36.146	5.751	0	0	0	39	0	TMPRSS13	intronic	NA
RCC_T7--1	chr11:117790432	C	NA	60	0	60	35.883	8.261	0	0	0	56	0	TMPRSS13	intronic	NA
RCC_T7--2	chr11:117790432	C	NA	51	0	51	35.157	8.615	0	0	0	47	0	TMPRSS13	intronic	NA
RCC_T7--3	chr11:117790432	C	NA	54	0	54	36.074	6.006	0	0	0	50	0	TMPRSS13	intronic	NA
RCC_T7--4	chr11:117790432	C	NA	89	0	89	36.067	6.413	0	0	0	85	0	TMPRSS13	intronic	NA
RCC_T7--5	chr11:117790432	C	NA	69	0	69	34.348	9.221	0	0	0	59	0	TMPRSS13	intronic	NA
RCC_T7--6	chr11:117790432	C	NA	80	0	79	34.696	8.495	0	0	0	71	0	TMPRSS13	intronic	NA
RCC_T7--7	chr11:117790432	C	T	56	0.196	45	37.044	3.914	11	30.727	13.417	44	8	TMPRSS13	intronic	NA
RCC_T7--8	chr11:117790432	C	T	45	0.111	40	35.875	7.283	5	37.200	2.588	37	5	TMPRSS13	intronic	NA
RCC_T7--9	chr11:117790432	C	T	50	0.080	46	36.478	5.399	4	36.500	2.380	43	4	TMPRSS13	intronic	NA
RCC_T7--GL	chr11:117790432	C	NA	68	0	68	36.015	6.730	0	0	0	65	0	TMPRSS13	intronic	NA
RCC_T7--10	chr11:1213947	T	NA	167	0	166	31.548	8.801	0	0	0	126	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--11	chr11:1213947	T	NA	188	0	184	32.060	8.567	0	0	0	147	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--1	chr11:1213947	T	NA	185	0	184	30.141	9.693	0	0	0	130	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--2	chr11:1213947	T	NA	141	0	139	29.662	10.605	0	0	0	96	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--3	chr11:1213947	T	A	209	0.167	171	30.988	8.244	35	32.657	10.485	132	29	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--4	chr11:1213947	T	A	160	0.200	127	29.937	9.521	32	31.844	8.421	95	23	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--5	chr11:1213947	T	A	202	0.213	156	30.378	9.295	43	31.953	8.286	110	33	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--6	chr11:1213947	T	A	143	0.182	112	31.795	8.142	26	30.000	12.335	88	19	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--7	chr11:1213947	T	NA	145	0	142	30.085	10.501	0	0	0	106	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--8	chr11:1213947	T	NA	168	0	166	30.494	9.733	0	0	0	123	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--9	chr11:1213947	T	NA	147	0	145	31.359	8.600	0	0	0	110	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--GL	chr11:1213947	T	NA	184	0	183	29.913	9.986	0	0	0	126	0	MUC2(dist=109531),MUC5B(dist=30348)	intergenic	NA
RCC_T7--10	chr11:126147060	A	NA	23	0	22	38.545	2.132	0	0	0	22	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--11	chr11:126147060	A	NA	38	0	38	36.789	5.121	0	0	0	35	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--1	chr11:126147060	A	NA	21	0	21	34.667	9.546	0	0	0	18	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--2	chr11:126147060	A	NA	30	0	30	36.567	6.781	0	0	0	29	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--3	chr11:126147060	A	NA	13	0	13	34.077	10.735	0	0	0	11	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--4	chr11:126147060	A	NA	37	0	37	37.622	2.975	0	0	0	37	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--5	chr11:126147060	A	T	40	0.150	34	35.529	9.100	6	34.500	6.656	31	5	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--6	chr11:126147060	A	NA	24	0	24	37.333	3.738	0	0	0	23	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--7	chr11:126147060	A	NA	21	0	21	36.333	4.851	0	0	0	18	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--8	chr11:126147060	A	NA	22	0	22	36.227	8.234	0	0	0	20	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--9	chr11:126147060	A	NA	28	0	28	35.893	4.685	0	0	0	26	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr11:126147060	A	NA	39	0	39	37.795	3.473	0	0	0	38	0	FOXRED1	exonic	nonsynonymous_SNV
RCC_T7--10	chr11:2929368	C	NA	39	0	39	34.436	8.711	0	0	0	36	0	SLC22A18	intronic	NA
RCC_T7--11	chr11:2929368	C	NA	38	0	38	35.921	5.385	0	0	0	36	0	SLC22A18	intronic	NA
RCC_T7--1	chr11:2929368	C	NA	46	0	46	32.783	10.172	0	0	0	38	0	SLC22A18	intronic	NA
RCC_T7--2	chr11:2929368	C	NA	39	0	39	35.410	7.415	0	0	0	36	0	SLC22A18	intronic	NA
RCC_T7--3	chr11:2929368	C	NA	43	0	43	35.605	7.365	0	0	0	38	0	SLC22A18	intronic	NA
RCC_T7--4	chr11:2929368	C	NA	26	0	25	35.200	9.274	0	0	0	23	0	SLC22A18	intronic	NA
RCC_T7--5	chr11:2929368	C	NA	36	0	36	36.028	6.851	0	0	0	33	0	SLC22A18	intronic	NA
RCC_T7--6	chr11:2929368	C	NA	30	0	30	32.167	9.674	0	0	0	24	0	SLC22A18	intronic	NA
RCC_T7--7	chr11:2929368	C	T	19	0.211	15	36.867	4.897	4	32.500	3.697	14	3	SLC22A18	intronic	NA
RCC_T7--8	chr11:2929368	C	NA	48	0	48	34.396	8.238	0	0	0	44	0	SLC22A18	intronic	NA
RCC_T7--9	chr11:2929368	C	NA	34	0	34	35.941	3.892	0	0	0	32	0	SLC22A18	intronic	NA
RCC_T7--GL	chr11:2929368	C	NA	47	0	46	32.717	10.243	0	0	0	34	0	SLC22A18	intronic	NA
RCC_T7--10	chr1:145601499	C	NA	63	0	63	38.000	3.972	0	0	0	62	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--11	chr1:145601499	C	NA	46	0	46	37.565	3.167	0	0	0	45	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--1	chr1:145601499	C	NA	60	0	59	38.051	3.282	0	0	0	57	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--2	chr1:145601499	C	NA	46	0	46	37.435	3.902	0	0	0	43	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--3	chr1:145601499	C	A	72	0.167	60	37.100	3.564	12	37.667	2.807	59	12	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--4	chr1:145601499	C	A	57	0.228	44	35.886	6.606	13	36.385	1.609	40	13	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--5	chr1:145601499	C	A	83	0.229	64	36.391	4.545	19	32.474	11.355	59	16	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--6	chr1:145601499	C	A	63	0.159	52	37.481	5.929	10	37.400	2.875	50	10	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--7	chr1:145601499	C	NA	50	0	50	36.820	5.749	0	0	0	43	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--8	chr1:145601499	C	NA	61	0	61	38.262	2.639	0	0	0	61	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--9	chr1:145601499	C	NA	55	0	55	37.018	3.759	0	0	0	53	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--GL	chr1:145601499	C	NA	62	0	61	37.525	3.608	0	0	0	60	0	NBPF10,NBPF20,POLR3C	intronic	NA
RCC_T7--10	chr1:146756234	C	A	31	0.065	29	37.621	4.395	2	36.000	1.414	28	2	CHD1L	intronic	NA
RCC_T7--11	chr1:146756234	C	NA	39	0	37	35.595	6.998	0	0	0	33	0	CHD1L	intronic	NA
RCC_T7--1	chr1:146756234	C	A	47	0.043	40	36.025	7.322	2	32.500	2.121	37	2	CHD1L	intronic	NA
RCC_T7--2	chr1:146756234	C	NA	36	0	34	36.971	6.900	0	0	0	33	0	CHD1L	intronic	NA
RCC_T7--3	chr1:146756234	C	A	43	0.023	41	36.537	8.438	1	31.000	0.000	39	1	CHD1L	intronic	NA
RCC_T7--4	chr1:146756234	C	NA	47	0	46	37.543	5.577	0	0	0	44	0	CHD1L	intronic	NA
RCC_T7--5	chr1:146756234	C	A	62	0.032	56	37.339	6.118	2	35.000	2.828	54	2	CHD1L	intronic	NA
RCC_T7--6	chr1:146756234	C	A	30	0.067	25	37.480	3.501	2	36.000	1.414	24	2	CHD1L	intronic	NA
RCC_T7--7	chr1:146756234	C	A	31	0.194	23	39.478	2.274	6	34.833	0.408	23	6	CHD1L	intronic	NA
RCC_T7--8	chr1:146756234	C	A	39	0.051	36	37.194	6.594	2	37.000	0.000	35	2	CHD1L	intronic	NA
RCC_T7--9	chr1:146756234	C	A	48	0.083	42	37.190	6.733	4	35.250	2.363	39	4	CHD1L	intronic	NA
RCC_T7--GL	chr1:146756234	C	NA	48	0	45	37.622	4.624	0	0	0	43	0	CHD1L	intronic	NA
RCC_T7--10	chr1:150812099	G	NA	109	0	108	32.630	9.550	0	0	0	90	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--11	chr1:150812099	G	NA	94	0	94	34.404	6.274	0	0	0	88	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--1	chr1:150812099	G	NA	105	0	104	32.894	8.157	0	0	0	83	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--2	chr1:150812099	G	A	75	0.253	55	34.436	6.970	19	32.895	6.411	49	14	ARNT	exonic	nonsynonymous_SNV
RCC_T7--3	chr1:150812099	G	NA	165	0	163	33.571	7.597	0	0	0	144	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--4	chr1:150812099	G	NA	160	0	159	32.868	9.013	0	0	0	138	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--5	chr1:150812099	G	NA	176	0	175	33.349	7.738	0	0	0	153	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--6	chr1:150812099	G	NA	123	0	123	33.407	7.293	0	0	0	111	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--7	chr1:150812099	G	NA	104	0	104	34.846	6.011	0	0	0	98	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--8	chr1:150812099	G	NA	109	0	106	31.868	9.647	0	0	0	84	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--9	chr1:150812099	G	NA	118	0	118	34.297	5.962	0	0	0	106	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--GL	chr1:150812099	G	NA	109	0	107	33.738	6.899	0	0	0	91	0	ARNT	exonic	nonsynonymous_SNV
RCC_T7--10	chr1:151337465	C	NA	104	0	104	35.240	7.004	0	0	0	94	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--11	chr1:151337465	C	T	102	0.167	85	35.106	7.002	17	34.118	8.859	76	16	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--1	chr1:151337465	C	T	71	0.239	54	35.315	6.944	17	31.235	10.281	46	12	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--2	chr1:151337465	C	NA	99	0	99	34.990	8.242	0	0	0	91	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--3	chr1:151337465	C	NA	150	0	149	34.738	7.365	0	0	0	129	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--4	chr1:151337465	C	NA	129	0	128	35.961	6.567	0	0	0	118	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--5	chr1:151337465	C	NA	131	0	129	34.620	7.352	0	0	0	113	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--6	chr1:151337465	C	NA	115	0	114	33.430	10.001	0	0	0	98	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--7	chr1:151337465	C	T	109	0.055	101	34.663	8.132	6	35.500	2.739	89	6	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--8	chr1:151337465	C	NA	85	0	85	35.082	5.581	0	0	0	78	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--9	chr1:151337465	C	NA	98	0	98	35.235	7.742	0	0	0	87	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr1:151337465	C	NA	96	0	96	35.573	6.190	0	0	0	88	0	SELENBP1	exonic	nonsynonymous_SNV
RCC_T7--10	chr11:55111320	C	NA	85	0	85	37.835	5.210	0	0	0	82	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--11	chr11:55111320	C	NA	65	0	65	37.631	5.678	0	0	0	62	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--1	chr11:55111320	C	NA	56	0	55	37.891	6.508	0	0	0	52	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--2	chr11:55111320	C	NA	55	0	55	38.673	2.776	0	0	0	55	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--3	chr11:55111320	C	T	80	0.237	60	37.633	5.039	19	39.000	2.708	58	19	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--4	chr11:55111320	C	T	84	0.262	62	35.194	9.737	22	36.318	5.250	54	21	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--5	chr11:55111320	C	T	105	0.181	85	37.235	5.677	19	38.368	3.148	80	18	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--6	chr11:55111320	C	T	64	0.125	55	37.291	6.871	8	37.125	4.390	52	7	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--7	chr11:55111320	C	NA	71	0	71	38.070	5.589	0	0	0	68	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--8	chr11:55111320	C	NA	58	0	58	38.103	3.161	0	0	0	58	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--9	chr11:55111320	C	NA	83	0	83	37.892	4.821	0	0	0	82	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--GL	chr11:55111320	C	NA	86	0	85	37.788	5.482	0	0	0	82	0	OR4A16	exonic	nonsynonymous_SNV
RCC_T7--10	chr1:16073653	C	NA	39	0	39	36.000	8.553	0	0	0	37	0	TMEM82	intronic	NA
RCC_T7--11	chr1:16073653	C	NA	27	0	27	37.815	3.563	0	0	0	26	0	TMEM82	intronic	NA
RCC_T7--1	chr1:16073653	C	NA	47	0	46	36.217	4.747	0	0	0	44	0	TMEM82	intronic	NA
RCC_T7--2	chr1:16073653	C	NA	37	0	37	34.730	8.530	0	0	0	33	0	TMEM82	intronic	NA
RCC_T7--3	chr1:16073653	C	NA	32	0	32	36.312	7.511	0	0	0	29	0	TMEM82	intronic	NA
RCC_T7--4	chr1:16073653	C	NA	30	0	30	37.167	3.687	0	0	0	29	0	TMEM82	intronic	NA
RCC_T7--5	chr1:16073653	C	NA	45	0	44	37.273	3.364	0	0	0	43	0	TMEM82	intronic	NA
RCC_T7--6	chr1:16073653	C	NA	25	0	25	35.960	4.495	0	0	0	24	0	TMEM82	intronic	NA
RCC_T7--7	chr1:16073653	C	A	21	0.190	17	32.941	12.557	4	36.000	4.243	14	4	TMEM82	intronic	NA
RCC_T7--8	chr1:16073653	C	NA	33	0	33	35.000	9.657	0	0	0	29	0	TMEM82	intronic	NA
RCC_T7--9	chr1:16073653	C	NA	28	0	28	36.143	8.186	0	0	0	25	0	TMEM82	intronic	NA
RCC_T7--GL	chr1:16073653	C	NA	50	0	50	36.700	8.016	0	0	0	46	0	TMEM82	intronic	NA
RCC_T7--10	chr11:612944	C	T	75	0.213	58	35.293	7.375	16	30.312	8.436	52	11	IRF7	intronic	NA
RCC_T7--11	chr11:612944	C	T	85	0.141	73	33.589	9.488	12	28.583	12.479	59	9	IRF7	intronic	NA
RCC_T7--1	chr11:612944	C	T	53	0.208	42	36.643	3.824	11	27.909	13.126	40	8	IRF7	intronic	NA
RCC_T7--2	chr11:612944	C	T	81	0.198	65	33.769	9.105	16	30.938	7.019	56	12	IRF7	intronic	NA
RCC_T7--3	chr11:612944	C	T	68	0.191	53	33.906	8.843	13	33.000	3.979	45	10	IRF7	intronic	NA
RCC_T7--4	chr11:612944	C	T	70	0.171	57	31.754	11.900	12	24.833	14.083	48	8	IRF7	intronic	NA
RCC_T7--5	chr11:612944	C	T	81	0.296	57	31.982	11.067	24	29.542	9.668	46	17	IRF7	intronic	NA
RCC_T7--6	chr11:612944	C	T	81	0.173	67	32.045	11.739	14	26.500	12.654	53	7	IRF7	intronic	NA
RCC_T7--7	chr11:612944	C	T	75	0.173	61	33.607	10.286	13	30.846	6.203	53	9	IRF7	intronic	NA
RCC_T7--8	chr11:612944	C	T	77	0.143	66	33.455	8.363	11	29.727	8.113	56	6	IRF7	intronic	NA
RCC_T7--9	chr11:612944	C	T	91	0.044	87	35.034	7.040	4	33.750	5.500	79	3	IRF7	intronic	NA
RCC_T7--GL	chr11:612944	C	NA	71	0	69	31.101	12.261	0	0	0	53	0	IRF7	intronic	NA
RCC_T7--10	chr11:6453172	C	T	108	0.167	90	34.889	8.422	18	35.333	4.971	83	17	HPX	exonic	nonsynonymous_SNV
RCC_T7--11	chr11:6453172	C	NA	111	0	110	35.582	5.014	0	0	0	102	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--1	chr11:6453172	C	NA	94	0	94	34.521	8.612	0	0	0	83	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--2	chr11:6453172	C	NA	88	0	86	34.930	8.417	0	0	0	75	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--3	chr11:6453172	C	NA	101	0	100	36.060	5.669	0	0	0	90	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--4	chr11:6453172	C	NA	108	0	106	33.962	7.868	0	0	0	89	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--5	chr11:6453172	C	NA	93	0	93	35.452	7.367	0	0	0	86	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--6	chr11:6453172	C	NA	73	0	73	35.699	8.142	0	0	0	67	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--7	chr11:6453172	C	T	104	0.106	93	36.226	7.100	11	36.818	3.188	86	11	HPX	exonic	nonsynonymous_SNV
RCC_T7--8	chr11:6453172	C	T	96	0.135	82	35.768	6.991	13	33.077	10.673	76	10	HPX	exonic	nonsynonymous_SNV
RCC_T7--9	chr11:6453172	C	T	105	0.124	92	36.033	7.183	13	34.000	7.012	87	11	HPX	exonic	nonsynonymous_SNV
RCC_T7--GL	chr11:6453172	C	NA	100	0	100	35.760	6.338	0	0	0	92	0	HPX	exonic	nonsynonymous_SNV
RCC_T7--10	chr11:72288443	G	NA	64	0	62	34.742	8.413	0	0	0	56	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--11	chr11:72288443	G	NA	77	0	77	34.753	7.846	0	0	0	70	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--1	chr11:72288443	G	NA	94	0	93	34.634	8.481	0	0	0	85	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--2	chr11:72288443	G	NA	65	0	62	35.774	5.935	0	0	0	59	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--3	chr11:72288443	G	T	82	0.329	54	34.444	8.777	27	32.481	9.337	47	22	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--4	chr11:72288443	G	T	81	0.222	63	34.063	7.818	18	29.333	13.907	54	13	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--5	chr11:72288443	G	T	86	0.093	77	33.922	9.137	8	34.250	4.027	67	7	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--6	chr11:72288443	G	T	68	0.132	58	32.621	9.343	9	33.111	4.910	45	7	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--7	chr11:72288443	G	NA	83	0	82	33.561	8.075	0	0	0	71	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--8	chr11:72288443	G	NA	70	0	70	35.786	6.978	0	0	0	66	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--9	chr11:72288443	G	NA	51	0	51	35.275	6.135	0	0	0	46	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--GL	chr11:72288443	G	NA	68	0	67	35.478	6.911	0	0	0	62	0	PDE2A	exonic	nonsynonymous_SNV
RCC_T7--10	chr12:110983846	G	NA	189	0	188	35.048	7.999	0	0	0	174	0	PPTC7	exonic	synonymous_SNV
RCC_T7--11	chr12:110983846	G	NA	172	0	171	35.994	6.027	0	0	0	162	0	PPTC7	exonic	synonymous_SNV
RCC_T7--1	chr12:110983846	G	NA	164	0	164	35.183	8.114	0	0	0	151	0	PPTC7	exonic	synonymous_SNV
RCC_T7--2	chr12:110983846	G	NA	165	0	164	36.183	5.605	0	0	0	154	0	PPTC7	exonic	synonymous_SNV
RCC_T7--3	chr12:110983846	G	C	247	0.215	194	35.021	8.200	53	34.396	8.317	176	47	PPTC7	exonic	synonymous_SNV
RCC_T7--4	chr12:110983846	G	C	199	0.186	162	36.142	6.153	37	34.946	10.365	153	33	PPTC7	exonic	synonymous_SNV
RCC_T7--5	chr12:110983846	G	C	216	0.157	182	35.374	8.299	34	35.206	6.936	167	31	PPTC7	exonic	synonymous_SNV
RCC_T7--6	chr12:110983846	G	C	215	0.181	175	35.206	7.873	39	36.410	3.431	162	37	PPTC7	exonic	synonymous_SNV
RCC_T7--7	chr12:110983846	G	NA	250	0	250	34.932	7.842	0	0	0	226	0	PPTC7	exonic	synonymous_SNV
RCC_T7--8	chr12:110983846	G	NA	184	0	183	36.011	6.880	0	0	0	174	0	PPTC7	exonic	synonymous_SNV
RCC_T7--9	chr12:110983846	G	NA	227	0	227	36.057	7.081	0	0	0	213	0	PPTC7	exonic	synonymous_SNV
RCC_T7--GL	chr12:110983846	G	NA	217	0	215	35.916	6.981	0	0	0	204	0	PPTC7	exonic	synonymous_SNV
RCC_T7--10	chr12:111345294	G	NA	165	0	164	35.598	7.878	0	0	0	148	0	CCDC63	UTR3	NA
RCC_T7--11	chr12:111345294	G	NA	121	0	120	34.975	9.479	0	0	0	110	0	CCDC63	UTR3	NA
RCC_T7--1	chr12:111345294	G	NA	160	0	159	35.767	7.025	0	0	0	146	0	CCDC63	UTR3	NA
RCC_T7--2	chr12:111345294	G	A	137	0.204	108	36.065	8.043	28	32.786	13.073	101	24	CCDC63	UTR3	NA
RCC_T7--3	chr12:111345294	G	NA	197	0	195	35.867	5.844	0	0	0	178	0	CCDC63	UTR3	NA
RCC_T7--4	chr12:111345294	G	NA	148	0	147	36.136	6.978	0	0	0	135	0	CCDC63	UTR3	NA
RCC_T7--5	chr12:111345294	G	NA	185	0	181	36.751	5.455	0	0	0	172	0	CCDC63	UTR3	NA
RCC_T7--6	chr12:111345294	G	NA	155	0	155	35.884	6.553	0	0	0	142	0	CCDC63	UTR3	NA
RCC_T7--7	chr12:111345294	G	NA	141	0	141	36.546	6.911	0	0	0	129	0	CCDC63	UTR3	NA
RCC_T7--8	chr12:111345294	G	NA	160	0	160	36.006	7.366	0	0	0	146	0	CCDC63	UTR3	NA
RCC_T7--9	chr12:111345294	G	NA	149	0	148	36.764	7.362	0	0	0	135	0	CCDC63	UTR3	NA
RCC_T7--GL	chr12:111345294	G	NA	155	0	155	36.639	6.505	0	0	0	145	0	CCDC63	UTR3	NA
RCC_T7--10	chr12:117718472	T	A	60	0.067	54	33.426	6.526	4	34.500	0.577	43	4	NOS1	intronic	NA
RCC_T7--11	chr12:117718472	T	NA	53	0	50	34.880	6.429	0	0	0	45	0	NOS1	intronic	NA
RCC_T7--1	chr12:117718472	T	A	68	0.074	61	33.164	8.040	5	21.400	15.176	53	2	NOS1	intronic	NA
RCC_T7--2	chr12:117718472	T	A	50	0.040	47	35.064	5.285	2	25.500	9.192	42	1	NOS1	intronic	NA
RCC_T7--3	chr12:117718472	T	A	29	0.138	25	33.760	5.925	4	34.000	0.000	23	4	NOS1	intronic	NA
RCC_T7--4	chr12:117718472	T	A	25	0.080	23	33.261	7.187	2	32.500	2.121	19	2	NOS1	intronic	NA
RCC_T7--5	chr12:117718472	T	A	50	0.080	45	33.356	7.932	4	32.250	2.754	38	3	NOS1	intronic	NA
RCC_T7--6	chr12:117718472	T	A	26	0.115	21	33.095	7.778	3	28.333	10.693	18	2	NOS1	intronic	NA
RCC_T7--7	chr12:117718472	T	A	12	0.167	10	35.500	1.434	2	29.500	6.364	10	1	NOS1	intronic	NA
RCC_T7--8	chr12:117718472	T	A	36	0.194	29	33.448	8.484	7	32.286	3.817	26	5	NOS1	intronic	NA
RCC_T7--9	chr12:117718472	T	A	47	0.064	44	31.227	10.892	3	34.333	0.577	33	3	NOS1	intronic	NA
RCC_T7--GL	chr12:117718472	T	NA	52	0	50	33.600	7.817	0	0	0	43	0	NOS1	intronic	NA
RCC_T7--10	chr12:123465698	C	NA	79	0	79	31.139	9.569	0	0	0	63	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--11	chr12:123465698	C	NA	112	0	110	31.000	9.741	0	0	0	86	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--1	chr12:123465698	C	NA	83	0	83	30.229	10.214	0	0	0	62	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--2	chr12:123465698	C	T	94	0.181	77	30.818	10.818	17	34.882	3.604	63	15	ARL6IP4	exonic	synonymous_SNV
RCC_T7--3	chr12:123465698	C	NA	71	0	69	30.087	11.012	0	0	0	52	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--4	chr12:123465698	C	NA	61	0	61	31.869	8.967	0	0	0	51	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--5	chr12:123465698	C	NA	100	0	100	31.030	10.281	0	0	0	77	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--6	chr12:123465698	C	NA	69	0	68	29.515	9.926	0	0	0	47	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--7	chr12:123465698	C	NA	73	0	73	30.041	10.556	0	0	0	55	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--8	chr12:123465698	C	NA	85	0	85	28.282	12.243	0	0	0	61	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--9	chr12:123465698	C	NA	72	0	71	30.282	9.483	0	0	0	52	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--GL	chr12:123465698	C	NA	116	0	115	28.852	11.355	0	0	0	83	0	ARL6IP4	exonic	synonymous_SNV
RCC_T7--10	chr1:237765320	T	NA	121	0	121	37.843	5.430	0	0	0	118	0	RYR2	intronic	NA
RCC_T7--11	chr1:237765320	T	NA	120	0	120	38.083	4.351	0	0	0	119	0	RYR2	intronic	NA
RCC_T7--1	chr1:237765320	T	NA	137	0	136	37.654	6.028	0	0	0	132	0	RYR2	intronic	NA
RCC_T7--2	chr1:237765320	T	NA	89	0	89	37.348	5.782	0	0	0	85	0	RYR2	intronic	NA
RCC_T7--3	chr1:237765320	T	A	147	0.388	90	37.689	5.450	57	35.789	9.922	87	52	RYR2	intronic	NA
RCC_T7--4	chr1:237765320	T	A	139	0.331	93	37.323	5.995	46	36.478	7.039	90	42	RYR2	intronic	NA
RCC_T7--5	chr1:237765320	T	A	192	0.323	129	37.775	3.507	62	36.452	6.854	124	60	RYR2	intronic	NA
RCC_T7--6	chr1:237765320	T	A	96	0.427	54	37.926	3.976	41	38.439	2.846	51	41	RYR2	intronic	NA
RCC_T7--7	chr1:237765320	T	NA	100	0	100	37.170	6.350	0	0	0	94	0	RYR2	intronic	NA
RCC_T7--8	chr1:237765320	T	NA	87	0	87	37.414	5.132	0	0	0	84	0	RYR2	intronic	NA
RCC_T7--9	chr1:237765320	T	NA	104	0	103	37.990	3.400	0	0	0	99	0	RYR2	intronic	NA
RCC_T7--GL	chr1:237765320	T	NA	139	0	137	36.343	7.008	0	0	0	129	0	RYR2	intronic	NA
RCC_T7--10	chr12:40825498	G	NA	47	0	47	37.915	4.262	0	0	0	46	0	MUC19	exonic	unknown
RCC_T7--11	chr12:40825498	G	NA	49	0	47	37.979	5.810	0	0	0	46	0	MUC19	exonic	unknown
RCC_T7--1	chr12:40825498	G	NA	50	0	50	36.180	7.963	0	0	0	46	0	MUC19	exonic	unknown
RCC_T7--2	chr12:40825498	G	NA	52	0	52	36.654	7.049	0	0	0	48	0	MUC19	exonic	unknown
RCC_T7--3	chr12:40825498	G	A	69	0.275	50	36.200	8.031	19	37.579	2.610	47	19	MUC19	exonic	unknown
RCC_T7--4	chr12:40825498	G	A	49	0.122	43	36.256	6.547	6	37.833	2.317	41	6	MUC19	exonic	unknown
RCC_T7--5	chr12:40825498	G	A	101	0.188	81	35.667	10.226	19	36.105	5.322	71	17	MUC19	exonic	unknown
RCC_T7--6	chr12:40825498	G	A	60	0.100	54	37.167	6.477	6	39.000	2.280	52	6	MUC19	exonic	unknown
RCC_T7--7	chr12:40825498	G	NA	56	0	56	38.250	3.146	0	0	0	55	0	MUC19	exonic	unknown
RCC_T7--8	chr12:40825498	G	NA	32	0	32	36.031	5.276	0	0	0	29	0	MUC19	exonic	unknown
RCC_T7--9	chr12:40825498	G	NA	51	0	51	37.863	3.394	0	0	0	49	0	MUC19	exonic	unknown
RCC_T7--GL	chr12:40825498	G	NA	40	0	39	38.154	3.005	0	0	0	39	0	MUC19	exonic	unknown
RCC_T7--10	chr12:8085871	T	C	40	0.125	35	37.314	4.114	5	38.600	2.191	32	5	SLC2A3	intronic	NA
RCC_T7--11	chr12:8085871	T	C	53	0.151	45	36.956	4.945	8	38.500	2.619	41	8	SLC2A3	intronic	NA
RCC_T7--1	chr12:8085871	T	C	56	0.054	52	36.942	4.937	3	38.333	3.055	49	3	SLC2A3	intronic	NA
RCC_T7--2	chr12:8085871	T	C	59	0.237	43	38.814	2.864	14	38.143	2.214	42	14	SLC2A3	intronic	NA
RCC_T7--3	chr12:8085871	T	C	30	0.133	26	37.115	7.711	4	28.000	17.569	25	3	SLC2A3	intronic	NA
RCC_T7--4	chr12:8085871	T	C	37	0.135	32	36.625	4.133	5	35.200	9.757	30	4	SLC2A3	intronic	NA
RCC_T7--5	chr12:8085871	T	C	48	0.271	35	35.286	8.205	13	36.462	5.125	32	11	SLC2A3	intronic	NA
RCC_T7--6	chr12:8085871	T	C	36	0.222	28	37.143	6.133	8	39.000	2.330	27	8	SLC2A3	intronic	NA
RCC_T7--7	chr12:8085871	T	C	23	0.130	20	37.200	5.473	3	40.000	0.000	19	3	SLC2A3	intronic	NA
RCC_T7--8	chr12:8085871	T	C	34	0.118	30	37.967	2.632	4	38.000	2.449	30	4	SLC2A3	intronic	NA
RCC_T7--9	chr12:8085871	T	C	38	0.079	35	36.457	6.670	3	36.333	2.082	34	3	SLC2A3	intronic	NA
RCC_T7--GL	chr12:8085871	T	NA	46	0	46	37.196	6.632	0	0	0	44	0	SLC2A3	intronic	NA
RCC_T7--10	chr13:20425551	A	NA	102	0	102	36.902	6.997	0	0	0	97	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--11	chr13:20425551	A	NA	94	0	93	37.516	6.144	0	0	0	89	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--1	chr13:20425551	A	NA	104	0	104	36.423	6.684	0	0	0	91	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--2	chr13:20425551	A	NA	104	0	103	37.408	5.176	0	0	0	99	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--3	chr13:20425551	A	G	115	0.122	101	37.109	5.385	14	38.857	2.214	95	14	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--4	chr13:20425551	A	G	125	0.280	88	36.125	7.843	35	35.086	9.027	79	32	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--5	chr13:20425551	A	G	148	0.209	116	36.112	7.223	31	38.452	3.020	109	30	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--6	chr13:20425551	A	G	102	0.167	85	37.318	5.359	17	36.000	9.394	82	16	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--7	chr13:20425551	A	NA	126	0	126	37.254	5.664	0	0	0	121	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--8	chr13:20425551	A	NA	103	0	103	37.155	5.546	0	0	0	98	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--9	chr13:20425551	A	NA	102	0	102	37.608	4.562	0	0	0	100	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--GL	chr13:20425551	A	NA	74	0	73	38.096	5.242	0	0	0	71	0	ZMYM5	exonic	nonsynonymous_SNV
RCC_T7--10	chr13:22076900	C	T	24	0.125	21	37.810	8.430	3	34.333	3.055	20	3	MICU2	intronic	NA
RCC_T7--11	chr13:22076900	C	T	22	0.136	18	39.556	2.121	3	31.000	6.000	18	2	MICU2	intronic	NA
RCC_T7--1	chr13:22076900	C	T	30	0.100	27	35.111	12.129	3	34.000	3.606	24	3	MICU2	intronic	NA
RCC_T7--2	chr13:22076900	C	NA	13	0	13	39.615	1.660	0	0	0	13	0	MICU2	intronic	NA
RCC_T7--3	chr13:22076900	C	T	16	0.062	15	38.000	7.856	1	33.000	0.000	14	1	MICU2	intronic	NA
RCC_T7--4	chr13:22076900	C	T	29	0.276	21	38.667	2.938	8	34.500	2.268	21	8	MICU2	intronic	NA
RCC_T7--5	chr13:22076900	C	T	21	0.095	19	39.158	3.304	2	32.000	1.414	18	2	MICU2	intronic	NA
RCC_T7--6	chr13:22076900	C	T	20	0.200	16	38.125	5.032	4	33.750	2.986	14	4	MICU2	intronic	NA
RCC_T7--7	chr13:22076900	C	T	21	0.143	18	38.278	3.832	3	34.000	3.000	17	3	MICU2	intronic	NA
RCC_T7--8	chr13:22076900	C	T	27	0.111	24	36.625	7.923	3	33.333	0.577	22	3	MICU2	intronic	NA
RCC_T7--9	chr13:22076900	C	T	16	0.188	13	35.923	8.271	3	35.000	2.000	11	3	MICU2	intronic	NA
RCC_T7--GL	chr13:22076900	C	NA	34	0	34	37.676	7.040	0	0	0	32	0	MICU2	intronic	NA
RCC_T7--10	chr13:25831295	C	NA	52	0	52	37.692	3.913	0	0	0	51	0	MTMR6	intronic	NA
RCC_T7--11	chr13:25831295	C	NA	47	0	47	37.170	8.181	0	0	0	45	0	MTMR6	intronic	NA
RCC_T7--1	chr13:25831295	C	NA	36	0	36	38.611	2.831	0	0	0	36	0	MTMR6	intronic	NA
RCC_T7--2	chr13:25831295	C	NA	38	0	38	38.447	2.910	0	0	0	37	0	MTMR6	intronic	NA
RCC_T7--3	chr13:25831295	C	NA	32	0	32	36.781	5.053	0	0	0	28	0	MTMR6	intronic	NA
RCC_T7--4	chr13:25831295	C	NA	30	0	30	36.367	8.058	0	0	0	28	0	MTMR6	intronic	NA
RCC_T7--5	chr13:25831295	C	NA	54	0	53	37.151	7.546	0	0	0	51	0	MTMR6	intronic	NA
RCC_T7--6	chr13:25831295	C	NA	34	0	34	37.559	3.831	0	0	0	33	0	MTMR6	intronic	NA
RCC_T7--7	chr13:25831295	C	A	26	0.154	22	37.455	3.582	4	37.750	2.062	21	4	MTMR6	intronic	NA
RCC_T7--8	chr13:25831295	C	NA	29	0	29	38.724	5.787	0	0	0	28	0	MTMR6	intronic	NA
RCC_T7--9	chr13:25831295	C	NA	52	0	52	37.827	3.612	0	0	0	51	0	MTMR6	intronic	NA
RCC_T7--GL	chr13:25831295	C	NA	47	0	47	38.000	4.118	0	0	0	45	0	MTMR6	intronic	NA
RCC_T7--10	chr13:32805407	G	NA	128	0	128	38.312	3.793	0	0	0	124	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--11	chr13:32805407	G	NA	107	0	106	37.613	4.728	0	0	0	103	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--1	chr13:32805407	G	NA	97	0	97	36.330	8.101	0	0	0	87	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--2	chr13:32805407	G	NA	83	0	83	37.723	4.312	0	0	0	78	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--3	chr13:32805407	G	A	118	0.025	115	36.991	5.985	3	38.667	3.215	111	3	FRY	exonic	nonsynonymous_SNV
RCC_T7--4	chr13:32805407	G	A	129	0.155	109	36.954	5.651	20	37.000	4.091	104	19	FRY	exonic	nonsynonymous_SNV
RCC_T7--5	chr13:32805407	G	A	137	0.007	135	37.185	5.568	1	39.000	0.000	128	1	FRY	exonic	nonsynonymous_SNV
RCC_T7--6	chr13:32805407	G	A	94	0.021	92	38.217	3.151	2	35.000	0.000	90	2	FRY	exonic	nonsynonymous_SNV
RCC_T7--7	chr13:32805407	G	NA	126	0	126	36.635	6.646	0	0	0	119	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--8	chr13:32805407	G	NA	108	0	108	37.333	6.273	0	0	0	103	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--9	chr13:32805407	G	NA	119	0	117	37.248	5.046	0	0	0	112	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--GL	chr13:32805407	G	NA	134	0	133	37.639	5.159	0	0	0	126	0	FRY	exonic	nonsynonymous_SNV
RCC_T7--10	chr13:77633819	C	NA	46	0	46	37.935	6.108	0	0	0	45	0	MYCBP2	intronic	NA
RCC_T7--11	chr13:77633819	C	A	25	0.160	21	36.667	8.487	4	37.750	3.775	20	4	MYCBP2	intronic	NA
RCC_T7--1	chr13:77633819	C	NA	37	0	36	37.889	3.934	0	0	0	34	0	MYCBP2	intronic	NA
RCC_T7--2	chr13:77633819	C	NA	25	0	25	37.360	4.563	0	0	0	24	0	MYCBP2	intronic	NA
RCC_T7--3	chr13:77633819	C	NA	40	0	40	37.175	4.618	0	0	0	36	0	MYCBP2	intronic	NA
RCC_T7--4	chr13:77633819	C	NA	31	0	30	38.533	3.115	0	0	0	30	0	MYCBP2	intronic	NA
RCC_T7--5	chr13:77633819	C	NA	40	0	40	36.950	5.033	0	0	0	37	0	MYCBP2	intronic	NA
RCC_T7--6	chr13:77633819	C	NA	20	0	20	36.900	8.614	0	0	0	19	0	MYCBP2	intronic	NA
RCC_T7--7	chr13:77633819	C	NA	25	0	25	37.800	3.536	0	0	0	24	0	MYCBP2	intronic	NA
RCC_T7--8	chr13:77633819	C	NA	29	0	29	36.241	7.652	0	0	0	27	0	MYCBP2	intronic	NA
RCC_T7--9	chr13:77633819	C	NA	49	0	49	36.102	6.841	0	0	0	44	0	MYCBP2	intronic	NA
RCC_T7--GL	chr13:77633819	C	NA	37	0	37	39.189	2.559	0	0	0	37	0	MYCBP2	intronic	NA
RCC_T7--10	chr14:75747408	G	A	46	0.022	23	37.522	8.005	1	31.000	0.000	22	1	FOS	intronic	NA
RCC_T7--11	chr14:75747408	G	A	46	0.065	22	38.227	2.975	3	37.000	0.000	22	3	FOS	intronic	NA
RCC_T7--1	chr14:75747408	G	A	72	0.097	30	36.833	3.239	7	32.857	3.891	30	6	FOS	intronic	NA
RCC_T7--2	chr14:75747408	G	A	66	0.061	37	37.838	2.843	4	33.750	2.754	37	4	FOS	intronic	NA
RCC_T7--3	chr14:75747408	G	A	45	0.089	22	36.273	4.516	4	35.500	1.732	18	4	FOS	intronic	NA
RCC_T7--4	chr14:75747408	G	A	43	0.023	10	35.900	12.069	1	34.000	0.000	9	1	FOS	intronic	NA
RCC_T7--5	chr14:75747408	G	A	51	0.020	22	35.318	8.208	1	34.000	0.000	20	1	FOS	intronic	NA
RCC_T7--6	chr14:75747408	G	NA	61	0	31	36.323	7.143	0	0	0	30	0	FOS	intronic	NA
RCC_T7--7	chr14:75747408	G	NA	35	0	19	37.474	4.338	0	0	0	17	0	FOS	intronic	NA
RCC_T7--8	chr14:75747408	G	A	53	0.038	23	36.783	8.073	2	33.500	0.707	22	2	FOS	intronic	NA
RCC_T7--9	chr14:75747408	G	A	34	0.059	15	36.400	4.239	2	35.500	2.121	14	2	FOS	intronic	NA
RCC_T7--GL	chr14:75747408	G	NA	54	0	38	38.000	3.247	0	0	0	37	0	FOS	intronic	NA
RCC_T7--10	chr14:96794672	T	C	85	0.200	66	38.970	4.076	17	38.529	3.744	62	16	ATG2B	intronic	NA
RCC_T7--11	chr14:96794672	T	C	86	0.116	76	37.684	4.826	10	40.100	1.912	73	10	ATG2B	intronic	NA
RCC_T7--1	chr14:96794672	T	C	71	0.268	52	37.019	8.808	19	36.000	8.781	48	18	ATG2B	intronic	NA
RCC_T7--2	chr14:96794672	T	C	64	0.156	54	37.741	6.588	10	38.800	3.615	51	10	ATG2B	intronic	NA
RCC_T7--3	chr14:96794672	T	C	71	0.310	49	37.735	6.399	22	36.636	8.505	46	20	ATG2B	intronic	NA
RCC_T7--4	chr14:96794672	T	C	63	0.190	50	37.800	3.969	12	35.083	6.842	47	11	ATG2B	intronic	NA
RCC_T7--5	chr14:96794672	T	C	103	0.165	86	38.512	4.941	17	36.765	6.704	83	15	ATG2B	intronic	NA
RCC_T7--6	chr14:96794672	T	C	58	0.276	42	38.333	6.350	16	38.562	5.887	40	15	ATG2B	intronic	NA
RCC_T7--7	chr14:96794672	T	C	66	0.212	52	38.423	5.330	14	39.357	2.098	49	14	ATG2B	intronic	NA
RCC_T7--8	chr14:96794672	T	C	68	0.206	54	38.463	5.749	14	39.071	2.369	53	14	ATG2B	intronic	NA
RCC_T7--9	chr14:96794672	T	C	96	0.104	86	38.791	3.512	10	35.500	6.852	83	8	ATG2B	intronic	NA
RCC_T7--GL	chr14:96794672	T	NA	117	0	116	38.741	4.513	0	0	0	114	0	ATG2B	intronic	NA
RCC_T7--10	chr15:86800249	G	A	42	0.143	36	37.306	6.701	6	39.167	2.229	35	6	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--11	chr15:86800249	G	NA	42	0	41	37.659	3.947	0	0	0	38	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--1	chr15:86800249	G	NA	42	0	41	38.439	3.034	0	0	0	41	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--2	chr15:86800249	G	NA	36	0	36	37.417	5.823	0	0	0	34	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--3	chr15:86800249	G	NA	42	0	42	36.476	7.510	0	0	0	40	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--4	chr15:86800249	G	NA	44	0	44	37.432	6.211	0	0	0	43	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--5	chr15:86800249	G	NA	49	0	48	36.375	8.018	0	0	0	45	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--6	chr15:86800249	G	NA	44	0	42	37.048	4.282	0	0	0	41	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--7	chr15:86800249	G	A	36	0.222	27	38.741	2.011	8	37.875	5.357	27	7	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--8	chr15:86800249	G	A	35	0.029	34	37.941	3.209	1	33.000	0.000	33	1	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--9	chr15:86800249	G	A	37	0.027	36	36.972	5.930	1	40.000	0.000	33	1	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr15:86800249	G	NA	40	0	40	37.250	7.012	0	0	0	38	0	AGBL1	exonic	nonsynonymous_SNV
RCC_T7--10	chr15:86822590	C	NA	46	0	46	37.783	6.113	0	0	0	45	0	AGBL1	intronic	NA
RCC_T7--11	chr15:86822590	C	NA	34	0	34	37.500	5.011	0	0	0	32	0	AGBL1	intronic	NA
RCC_T7--1	chr15:86822590	C	NA	38	0	38	37.447	5.717	0	0	0	36	0	AGBL1	intronic	NA
RCC_T7--2	chr15:86822590	C	NA	32	0	32	36.375	7.682	0	0	0	30	0	AGBL1	intronic	NA
RCC_T7--3	chr15:86822590	C	NA	16	0	16	39.188	1.797	0	0	0	16	0	AGBL1	intronic	NA
RCC_T7--4	chr15:86822590	C	NA	28	0	28	36.714	7.605	0	0	0	26	0	AGBL1	intronic	NA
RCC_T7--5	chr15:86822590	C	NA	29	0	29	35.483	7.462	0	0	0	25	0	AGBL1	intronic	NA
RCC_T7--6	chr15:86822590	C	NA	24	0	24	35.833	5.821	0	0	0	22	0	AGBL1	intronic	NA
RCC_T7--7	chr15:86822590	C	NA	10	0	9	36.889	5.036	0	0	0	8	0	AGBL1	intronic	NA
RCC_T7--8	chr15:86822590	C	A	11	0.273	8	38.250	2.550	3	38.667	0.577	8	3	AGBL1	intronic	NA
RCC_T7--9	chr15:86822590	C	NA	40	0	40	36.425	8.901	0	0	0	37	0	AGBL1	intronic	NA
RCC_T7--GL	chr15:86822590	C	NA	39	0	37	37.838	4.140	0	0	0	34	0	AGBL1	intronic	NA
RCC_T7--10	chr16:21161558	A	T	20	0.050	19	33.947	11.093	1	37.000	0.000	17	1	DNAH3	intronic	NA
RCC_T7--11	chr16:21161558	A	T	25	0.160	21	35.333	4.619	4	31.250	4.113	18	3	DNAH3	intronic	NA
RCC_T7--1	chr16:21161558	A	T	32	0.062	30	33.433	8.693	2	35.500	2.121	24	2	DNAH3	intronic	NA
RCC_T7--2	chr16:21161558	A	T	15	0.133	13	39.000	2.082	2	34.000	1.414	13	2	DNAH3	intronic	NA
RCC_T7--3	chr16:21161558	A	T	14	0.429	8	35.625	7.090	6	33.667	3.670	7	6	DNAH3	intronic	NA
RCC_T7--4	chr16:21161558	A	T	11	0.182	9	31.111	11.688	2	34.500	0.707	7	2	DNAH3	intronic	NA
RCC_T7--5	chr16:21161558	A	T	22	0.091	20	37.000	6.521	2	32.000	2.828	18	2	DNAH3	intronic	NA
RCC_T7--6	chr16:21161558	A	T	10	0.100	9	36.111	4.833	1	37.000	0.000	8	1	DNAH3	intronic	NA
RCC_T7--7	chr16:21161558	A	T	17	0.118	15	35.400	9.583	2	33.000	1.414	14	2	DNAH3	intronic	NA
RCC_T7--8	chr16:21161558	A	T	24	0.125	21	35.810	4.546	3	31.333	4.619	19	2	DNAH3	intronic	NA
RCC_T7--9	chr16:21161558	A	T	21	0.095	19	35.579	4.694	2	35.000	0.000	18	2	DNAH3	intronic	NA
RCC_T7--GL	chr16:21161558	A	NA	52	0	51	36.373	6.753	0	0	0	47	0	DNAH3	intronic	NA
RCC_T7--10	chr16:3273784	G	NA	138	0	138	37.819	4.091	0	0	0	132	0	ZNF200	UTR3	NA
RCC_T7--11	chr16:3273784	G	NA	158	0	158	37.044	7.118	0	0	0	148	0	ZNF200	UTR3	NA
RCC_T7--1	chr16:3273784	G	NA	159	0	159	38.195	5.302	0	0	0	154	0	ZNF200	UTR3	NA
RCC_T7--2	chr16:3273784	G	T	126	0.270	92	37.957	5.954	34	37.353	6.967	90	33	ZNF200	UTR3	NA
RCC_T7--3	chr16:3273784	G	NA	125	0	123	37.236	6.442	0	0	0	117	0	ZNF200	UTR3	NA
RCC_T7--4	chr16:3273784	G	NA	129	0	127	36.843	6.796	0	0	0	119	0	ZNF200	UTR3	NA
RCC_T7--5	chr16:3273784	G	NA	161	0	161	35.988	7.019	0	0	0	151	0	ZNF200	UTR3	NA
RCC_T7--6	chr16:3273784	G	NA	87	0	85	37.435	6.585	0	0	0	82	0	ZNF200	UTR3	NA
RCC_T7--7	chr16:3273784	G	NA	106	0	106	37.991	3.763	0	0	0	101	0	ZNF200	UTR3	NA
RCC_T7--8	chr16:3273784	G	NA	113	0	113	37.088	6.787	0	0	0	108	0	ZNF200	UTR3	NA
RCC_T7--9	chr16:3273784	G	NA	120	0	120	37.025	6.582	0	0	0	112	0	ZNF200	UTR3	NA
RCC_T7--GL	chr16:3273784	G	NA	154	0	153	37.902	4.820	0	0	0	149	0	ZNF200	UTR3	NA
RCC_T7--10	chr16:4863783	C	NA	57	0	57	35.211	9.422	0	0	0	49	0	GLYR1	exonic	synonymous_SNV
RCC_T7--11	chr16:4863783	C	NA	77	0	77	34.455	7.873	0	0	0	67	0	GLYR1	exonic	synonymous_SNV
RCC_T7--1	chr16:4863783	C	NA	57	0	57	36.509	6.607	0	0	0	54	0	GLYR1	exonic	synonymous_SNV
RCC_T7--2	chr16:4863783	C	NA	66	0	65	35.308	7.754	0	0	0	58	0	GLYR1	exonic	synonymous_SNV
RCC_T7--3	chr16:4863783	C	NA	74	0	74	35.149	7.241	0	0	0	65	0	GLYR1	exonic	synonymous_SNV
RCC_T7--4	chr16:4863783	C	NA	87	0	84	33.750	9.787	0	0	0	70	0	GLYR1	exonic	synonymous_SNV
RCC_T7--5	chr16:4863783	C	NA	61	0	61	35.000	6.802	0	0	0	54	0	GLYR1	exonic	synonymous_SNV
RCC_T7--6	chr16:4863783	C	NA	45	0	44	35.409	7.283	0	0	0	41	0	GLYR1	exonic	synonymous_SNV
RCC_T7--7	chr16:4863783	C	G	55	0.127	48	35.938	5.640	7	37.286	2.870	44	7	GLYR1	exonic	synonymous_SNV
RCC_T7--8	chr16:4863783	C	NA	64	0	63	36.190	5.902	0	0	0	60	0	GLYR1	exonic	synonymous_SNV
RCC_T7--9	chr16:4863783	C	NA	64	0	63	35.825	6.757	0	0	0	58	0	GLYR1	exonic	synonymous_SNV
RCC_T7--GL	chr16:4863783	C	NA	54	0	52	36.423	6.008	0	0	0	50	0	GLYR1	exonic	synonymous_SNV
RCC_T7--10	chr16:67912920	A	G	143	0.175	118	34.271	8.384	25	35.120	6.858	99	24	EDC4	exonic	nonsynonymous_SNV
RCC_T7--11	chr16:67912920	A	G	139	0.094	125	34.360	7.641	13	35.154	3.313	114	12	EDC4	exonic	nonsynonymous_SNV
RCC_T7--1	chr16:67912920	A	G	127	0.157	106	35.708	5.577	20	37.350	3.083	99	20	EDC4	exonic	nonsynonymous_SNV
RCC_T7--2	chr16:67912920	A	G	139	0.201	110	34.245	8.011	28	36.321	4.439	98	26	EDC4	exonic	nonsynonymous_SNV
RCC_T7--3	chr16:67912920	A	G	138	0.210	109	34.055	8.451	29	30.414	12.411	96	23	EDC4	exonic	nonsynonymous_SNV
RCC_T7--4	chr16:67912920	A	G	135	0.244	100	32.560	9.987	33	34.939	8.093	83	29	EDC4	exonic	nonsynonymous_SNV
RCC_T7--5	chr16:67912920	A	G	149	0.302	103	34.447	8.024	45	34.533	7.521	88	40	EDC4	exonic	nonsynonymous_SNV
RCC_T7--6	chr16:67912920	A	G	150	0.167	125	34.632	7.424	25	33.040	7.866	116	20	EDC4	exonic	nonsynonymous_SNV
RCC_T7--7	chr16:67912920	A	G	122	0.156	102	35.108	7.171	19	35.263	8.672	94	17	EDC4	exonic	nonsynonymous_SNV
RCC_T7--8	chr16:67912920	A	G	97	0.052	92	34.293	8.439	5	36.800	4.919	84	4	EDC4	exonic	nonsynonymous_SNV
RCC_T7--9	chr16:67912920	A	G	146	0.110	128	35.336	6.194	16	35.375	4.829	121	15	EDC4	exonic	nonsynonymous_SNV
RCC_T7--GL	chr16:67912920	A	NA	100	0	99	34.889	7.245	0	0	0	87	0	EDC4	exonic	nonsynonymous_SNV
RCC_T7--10	chr16:87435840	C	NA	35	0	35	37.429	6.137	0	0	0	34	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--11	chr16:87435840	C	NA	37	0	37	37.054	3.566	0	0	0	36	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--1	chr16:87435840	C	NA	38	0	38	35.500	8.093	0	0	0	34	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--2	chr16:87435840	C	NA	29	0	29	39.310	1.442	0	0	0	29	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--3	chr16:87435840	C	NA	29	0	28	36.714	6.486	0	0	0	26	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--4	chr16:87435840	C	NA	36	0	36	36.111	6.145	0	0	0	34	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--5	chr16:87435840	C	NA	38	0	38	37.632	3.079	0	0	0	37	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--6	chr16:87435840	C	NA	26	0	26	38.654	2.416	0	0	0	26	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--7	chr16:87435840	C	A	26	0.192	20	36.550	5.010	5	31.400	7.537	18	4	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--8	chr16:87435840	C	NA	23	0	23	37.130	3.109	0	0	0	22	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--9	chr16:87435840	C	NA	23	0	23	36.087	7.833	0	0	0	22	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--GL	chr16:87435840	C	NA	39	0	39	37.385	4.865	0	0	0	38	0	MAP1LC3B	exonic	nonsynonymous_SNV
RCC_T7--10	chr17:18047671	G	C	29	0.069	27	34.815	8.190	2	29.500	6.364	25	1	MYO15A	intronic	NA
RCC_T7--11	chr17:18047671	G	C	21	0.286	15	37.467	3.067	6	27.500	12.613	15	5	MYO15A	intronic	NA
RCC_T7--1	chr17:18047671	G	C	36	0.028	35	34.400	8.283	1	31.000	0.000	32	1	MYO15A	intronic	NA
RCC_T7--2	chr17:18047671	G	NA	15	0	14	36.071	3.125	0	0	0	13	0	MYO15A	intronic	NA
RCC_T7--3	chr17:18047671	G	C	21	0.048	20	32.100	8.777	1	31.000	0.000	16	1	MYO15A	intronic	NA
RCC_T7--4	chr17:18047671	G	C	20	0.100	17	36.471	5.490	2	33.000	2.828	15	2	MYO15A	intronic	NA
RCC_T7--5	chr17:18047671	G	NA	25	0	25	35.240	4.409	0	0	0	24	0	MYO15A	intronic	NA
RCC_T7--6	chr17:18047671	G	C	34	0.059	32	35.219	6.205	2	32.000	1.414	29	2	MYO15A	intronic	NA
RCC_T7--7	chr17:18047671	G	C	17	0.118	15	32.200	12.560	2	32.000	1.414	12	2	MYO15A	intronic	NA
RCC_T7--8	chr17:18047671	G	C	28	0.179	23	37.739	2.435	5	34.800	1.304	23	5	MYO15A	intronic	NA
RCC_T7--9	chr17:18047671	G	NA	19	0	18	30.944	12.506	0	0	0	14	0	MYO15A	intronic	NA
RCC_T7--GL	chr17:18047671	G	NA	40	0	40	34.625	8.906	0	0	0	35	0	MYO15A	intronic	NA
RCC_T7--10	chr17:35468563	C	T	110	0.155	92	36.967	6.520	17	34.647	5.499	88	15	ACACA	exonic	synonymous_SNV
RCC_T7--11	chr17:35468563	C	T	138	0.109	123	36.293	6.538	15	35.200	4.379	116	13	ACACA	exonic	synonymous_SNV
RCC_T7--1	chr17:35468563	C	T	112	0.161	94	35.894	7.284	18	37.444	2.455	89	18	ACACA	exonic	synonymous_SNV
RCC_T7--2	chr17:35468563	C	T	102	0.167	85	36.165	5.928	17	35.941	9.052	79	16	ACACA	exonic	synonymous_SNV
RCC_T7--3	chr17:35468563	C	T	146	0.151	124	36.306	5.142	22	34.182	7.423	115	19	ACACA	exonic	synonymous_SNV
RCC_T7--4	chr17:35468563	C	T	114	0.175	92	36.163	6.243	20	35.500	4.072	84	19	ACACA	exonic	synonymous_SNV
RCC_T7--5	chr17:35468563	C	T	166	0.211	131	35.916	7.827	35	34.743	5.532	120	28	ACACA	exonic	synonymous_SNV
RCC_T7--6	chr17:35468563	C	T	99	0.182	81	36.210	7.122	18	30.667	10.550	77	14	ACACA	exonic	synonymous_SNV
RCC_T7--7	chr17:35468563	C	T	73	0.247	55	35.527	7.705	18	34.722	8.259	48	15	ACACA	exonic	synonymous_SNV
RCC_T7--8	chr17:35468563	C	T	96	0.031	91	35.703	7.899	3	35.000	5.292	83	2	ACACA	exonic	synonymous_SNV
RCC_T7--9	chr17:35468563	C	T	113	0.115	100	36.950	4.906	13	31.692	10.419	97	9	ACACA	exonic	synonymous_SNV
RCC_T7--GL	chr17:35468563	C	NA	125	0	122	35.828	7.542	0	0	0	112	0	ACACA	exonic	synonymous_SNV
RCC_T7--10	chr17:40699320	G	A	144	0.194	116	35.362	7.837	28	34.429	7.700	106	24	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--11	chr17:40699320	G	NA	200	0	200	34.715	8.580	0	0	0	180	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--1	chr17:40699320	G	NA	182	0	180	36.039	5.582	0	0	0	167	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--2	chr17:40699320	G	NA	163	0	163	33.613	9.072	0	0	0	138	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--3	chr17:40699320	G	NA	194	0	193	33.632	9.290	0	0	0	170	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--4	chr17:40699320	G	NA	163	0	163	34.859	8.031	0	0	0	144	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--5	chr17:40699320	G	NA	211	0	210	35.362	8.245	0	0	0	192	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--6	chr17:40699320	G	NA	154	0	153	34.092	8.472	0	0	0	128	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--7	chr17:40699320	G	NA	150	0	149	34.268	9.021	0	0	0	129	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--8	chr17:40699320	G	NA	157	0	156	35.333	6.873	0	0	0	144	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--9	chr17:40699320	G	NA	134	0	134	35.896	6.507	0	0	0	125	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--GL	chr17:40699320	G	NA	173	0	172	35.622	7.809	0	0	0	158	0	NAGLU(dist=2854),HSD17B1(dist=4664)	intergenic	NA
RCC_T7--10	chr17:4693058	C	G	129	0.124	113	33.186	9.613	16	29.125	12.873	99	10	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--11	chr17:4693058	C	G	118	0.161	99	33.222	9.132	19	31.105	11.100	90	16	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--1	chr17:4693058	C	G	152	0.164	127	31.118	11.097	25	33.640	7.399	106	23	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--2	chr17:4693058	C	G	105	0.238	80	33.913	7.898	25	33.640	7.994	74	21	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--3	chr17:4693058	C	G	139	0.187	113	33.602	7.063	26	33.038	7.502	100	23	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--4	chr17:4693058	C	G	105	0.171	86	31.349	10.258	18	29.278	10.254	67	11	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--5	chr17:4693058	C	G	199	0.221	155	32.910	10.002	44	31.023	10.443	136	35	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--6	chr17:4693058	C	G	115	0.191	93	31.473	10.394	22	31.864	10.947	73	18	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--7	chr17:4693058	C	G	102	0.137	87	32.908	8.327	14	22.429	14.862	75	7	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--8	chr17:4693058	C	G	162	0.025	157	33.618	7.386	4	37.000	3.559	140	4	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--9	chr17:4693058	C	G	111	0.054	105	33.371	9.613	6	28.333	11.742	92	4	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--GL	chr17:4693058	C	NA	134	0	134	33.321	7.548	0	0	0	119	0	GLTPD2	exonic	nonsynonymous_SNV
RCC_T7--10	chr17:7578271	T	NA	139	0	138	36.435	5.973	0	0	0	129	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--11	chr17:7578271	T	NA	152	0	151	36.066	6.070	0	0	0	139	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--1	chr17:7578271	T	NA	148	0	148	36.615	4.765	0	0	0	139	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--2	chr17:7578271	T	C	99	0.162	82	36.098	7.445	16	36.812	5.879	77	15	TP53	exonic	nonsynonymous_SNV
RCC_T7--3	chr17:7578271	T	NA	169	0	168	36.690	5.337	0	0	0	161	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--4	chr17:7578271	T	NA	125	0	125	34.024	9.203	0	0	0	108	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--5	chr17:7578271	T	NA	138	0	137	36.730	5.546	0	0	0	127	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--6	chr17:7578271	T	NA	159	0	157	35.892	8.110	0	0	0	142	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--7	chr17:7578271	T	NA	107	0	107	36.234	5.330	0	0	0	97	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--8	chr17:7578271	T	NA	153	0	153	35.124	8.676	0	0	0	137	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--9	chr17:7578271	T	NA	114	0	114	35.868	6.621	0	0	0	104	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--GL	chr17:7578271	T	NA	120	0	120	36.333	6.074	0	0	0	113	0	TP53	exonic	nonsynonymous_SNV
RCC_T7--10	chr18:56245970	A	G	29	0.138	25	37.560	3.720	4	34.000	2.449	25	4	ALPK2	intronic	NA
RCC_T7--11	chr18:56245970	A	G	24	0.042	23	35.870	10.038	1	34.000	0.000	21	1	ALPK2	intronic	NA
RCC_T7--1	chr18:56245970	A	G	27	0.037	26	37.462	7.711	1	37.000	0.000	25	1	ALPK2	intronic	NA
RCC_T7--2	chr18:56245970	A	G	21	0.048	20	39.150	2.183	1	34.000	0.000	20	1	ALPK2	intronic	NA
RCC_T7--3	chr18:56245970	A	G	13	0.154	11	36.364	4.945	2	34.000	4.243	10	2	ALPK2	intronic	NA
RCC_T7--4	chr18:56245970	A	NA	24	0	24	37.542	4.128	0	0	0	22	0	ALPK2	intronic	NA
RCC_T7--5	chr18:56245970	A	NA	22	0	19	37.000	8.756	0	0	0	18	0	ALPK2	intronic	NA
RCC_T7--6	chr18:56245970	A	G	25	0.080	23	36.217	8.404	2	31.000	0.000	21	2	ALPK2	intronic	NA
RCC_T7--7	chr18:56245970	A	G	15	0.200	12	39.667	1.497	3	31.667	2.082	12	3	ALPK2	intronic	NA
RCC_T7--8	chr18:56245970	A	G	21	0.048	20	37.650	4.196	1	34.000	0.000	19	1	ALPK2	intronic	NA
RCC_T7--9	chr18:56245970	A	G	34	0.235	26	37.538	3.712	8	33.125	2.949	25	7	ALPK2	intronic	NA
RCC_T7--GL	chr18:56245970	A	NA	36	0	35	37.771	7.203	0	0	0	33	0	ALPK2	intronic	NA
RCC_T7--10	chr19:21992730	C	NA	28	0	28	38.250	3.158	0	0	0	28	0	ZNF43	intronic	NA
RCC_T7--11	chr19:21992730	C	NA	39	0	39	37.821	4.358	0	0	0	38	0	ZNF43	intronic	NA
RCC_T7--1	chr19:21992730	C	NA	42	0	40	38.300	2.911	0	0	0	40	0	ZNF43	intronic	NA
RCC_T7--2	chr19:21992730	C	A	43	0.209	33	39.121	3.120	9	38.111	2.934	32	9	ZNF43	intronic	NA
RCC_T7--3	chr19:21992730	C	NA	16	0	16	38.250	2.517	0	0	0	16	0	ZNF43	intronic	NA
RCC_T7--4	chr19:21992730	C	NA	17	0	17	36.706	9.231	0	0	0	16	0	ZNF43	intronic	NA
RCC_T7--5	chr19:21992730	C	NA	44	0	44	38.295	5.219	0	0	0	43	0	ZNF43	intronic	NA
RCC_T7--6	chr19:21992730	C	NA	17	0	17	38.235	3.011	0	0	0	17	0	ZNF43	intronic	NA
RCC_T7--7	chr19:21992730	C	NA	25	0	25	38.400	3.926	0	0	0	24	0	ZNF43	intronic	NA
RCC_T7--8	chr19:21992730	C	NA	33	0	33	38.152	3.094	0	0	0	33	0	ZNF43	intronic	NA
RCC_T7--9	chr19:21992730	C	NA	30	0	29	37.931	4.208	0	0	0	28	0	ZNF43	intronic	NA
RCC_T7--GL	chr19:21992730	C	NA	45	0	45	38.133	3.355	0	0	0	44	0	ZNF43	intronic	NA
RCC_T7--10	chr19:21992731	C	NA	28	0	28	37.821	3.632	0	0	0	26	0	ZNF43	intronic	NA
RCC_T7--11	chr19:21992731	C	NA	36	0	36	38.694	3.041	0	0	0	35	0	ZNF43	intronic	NA
RCC_T7--1	chr19:21992731	C	NA	42	0	42	37.214	6.388	0	0	0	40	0	ZNF43	intronic	NA
RCC_T7--2	chr19:21992731	C	A	43	0.209	34	39.000	2.663	9	37.222	3.114	34	9	ZNF43	intronic	NA
RCC_T7--3	chr19:21992731	C	NA	16	0	16	38.000	3.011	0	0	0	16	0	ZNF43	intronic	NA
RCC_T7--4	chr19:21992731	C	NA	17	0	17	36.588	9.206	0	0	0	16	0	ZNF43	intronic	NA
RCC_T7--5	chr19:21992731	C	NA	45	0	45	37.511	5.868	0	0	0	41	0	ZNF43	intronic	NA
RCC_T7--6	chr19:21992731	C	NA	17	0	17	38.000	3.202	0	0	0	17	0	ZNF43	intronic	NA
RCC_T7--7	chr19:21992731	C	NA	24	0	24	38.750	3.352	0	0	0	23	0	ZNF43	intronic	NA
RCC_T7--8	chr19:21992731	C	NA	31	0	31	38.258	2.503	0	0	0	31	0	ZNF43	intronic	NA
RCC_T7--9	chr19:21992731	C	NA	30	0	30	36.667	7.558	0	0	0	28	0	ZNF43	intronic	NA
RCC_T7--GL	chr19:21992731	C	NA	44	0	44	38.091	3.340	0	0	0	43	0	ZNF43	intronic	NA
RCC_T7--10	chr19:2987928	C	NA	61	0	61	34.934	6.993	0	0	0	57	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--11	chr19:2987928	C	NA	60	0	60	35.450	6.883	0	0	0	58	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--1	chr19:2987928	C	NA	75	0	74	34.811	5.726	0	0	0	69	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--2	chr19:2987928	C	T	74	0.203	59	36.220	5.069	15	35.600	3.979	52	14	TLE6	exonic	nonsynonymous_SNV
RCC_T7--3	chr19:2987928	C	NA	59	0	59	34.610	8.842	0	0	0	52	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--4	chr19:2987928	C	NA	51	0	51	35.529	6.058	0	0	0	49	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--5	chr19:2987928	C	NA	53	0	53	35.038	9.023	0	0	0	48	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--6	chr19:2987928	C	NA	55	0	55	34.509	8.393	0	0	0	48	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--7	chr19:2987928	C	NA	47	0	47	32.255	11.078	0	0	0	40	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--8	chr19:2987928	C	NA	56	0	56	34.286	6.941	0	0	0	51	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--9	chr19:2987928	C	NA	38	0	37	34.838	8.777	0	0	0	33	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--GL	chr19:2987928	C	NA	61	0	61	34.689	9.546	0	0	0	53	0	TLE6	exonic	nonsynonymous_SNV
RCC_T7--10	chr19:45489547	C	A	30	0.033	28	35.821	7.329	1	37.000	0.000	27	1	CLPTM1	intronic	NA
RCC_T7--11	chr19:45489547	C	A	33	0.030	31	36.032	4.135	1	35.000	0.000	29	1	CLPTM1	intronic	NA
RCC_T7--1	chr19:45489547	C	A	35	0.029	34	34.794	5.547	1	34.000	0.000	30	1	CLPTM1	intronic	NA
RCC_T7--2	chr19:45489547	C	NA	30	0	29	35.034	9.582	0	0	0	27	0	CLPTM1	intronic	NA
RCC_T7--3	chr19:45489547	C	A	26	0.077	24	35.042	8.148	2	34.000	4.243	21	2	CLPTM1	intronic	NA
RCC_T7--4	chr19:45489547	C	A	33	0.030	32	36.875	4.619	1	34.000	0.000	30	1	CLPTM1	intronic	NA
RCC_T7--5	chr19:45489547	C	A	45	0.089	40	35.175	6.857	4	26.250	16.174	35	3	CLPTM1	intronic	NA
RCC_T7--6	chr19:45489547	C	A	33	0.121	29	34.552	6.434	4	29.000	5.598	27	2	CLPTM1	intronic	NA
RCC_T7--7	chr19:45489547	C	A	17	0.235	13	36.000	5.212	4	32.000	4.000	12	3	CLPTM1	intronic	NA
RCC_T7--8	chr19:45489547	C	A	28	0.071	26	32.692	10.657	2	34.000	0.000	21	2	CLPTM1	intronic	NA
RCC_T7--9	chr19:45489547	C	A	27	0.148	23	34.609	8.973	4	34.500	0.577	19	4	CLPTM1	intronic	NA
RCC_T7--GL	chr19:45489547	C	NA	38	0	38	32.105	10.160	0	0	0	31	0	CLPTM1	intronic	NA
RCC_T7--10	chr19:45489548	A	NA	30	0	28	35.786	7.300	0	0	0	26	0	CLPTM1	intronic	NA
RCC_T7--11	chr19:45489548	A	G	33	0.030	32	35.250	7.067	1	35.000	0.000	29	1	CLPTM1	intronic	NA
RCC_T7--1	chr19:45489548	A	G	35	0.029	34	35.412	5.112	1	34.000	0.000	29	1	CLPTM1	intronic	NA
RCC_T7--2	chr19:45489548	A	NA	30	0	30	34.167	11.447	0	0	0	26	0	CLPTM1	intronic	NA
RCC_T7--3	chr19:45489548	A	G	26	0.077	24	34.792	8.632	2	35.500	2.121	22	2	CLPTM1	intronic	NA
RCC_T7--4	chr19:45489548	A	G	33	0.030	32	35.750	5.086	1	34.000	0.000	28	1	CLPTM1	intronic	NA
RCC_T7--5	chr19:45489548	A	G	46	0.130	40	33.700	8.718	6	23.667	16.789	33	4	CLPTM1	intronic	NA
RCC_T7--6	chr19:45489548	A	G	33	0.152	28	35.357	4.684	5	29.800	8.228	27	4	CLPTM1	intronic	NA
RCC_T7--7	chr19:45489548	A	G	18	0.278	13	36.385	5.091	5	32.600	1.949	12	5	CLPTM1	intronic	NA
RCC_T7--8	chr19:45489548	A	G	26	0.115	23	34.261	8.476	3	23.333	18.475	20	2	CLPTM1	intronic	NA
RCC_T7--9	chr19:45489548	A	G	29	0.207	23	34.522	8.207	6	34.333	1.966	20	6	CLPTM1	intronic	NA
RCC_T7--GL	chr19:45489548	A	NA	36	0	36	32.778	8.563	0	0	0	31	0	CLPTM1	intronic	NA
RCC_T7--10	chr19:49867043	C	NA	23	0	23	35.696	5.506	0	0	0	21	0	DKKL1	UTR5	NA
RCC_T7--11	chr19:49867043	C	NA	31	0	31	34.419	7.478	0	0	0	26	0	DKKL1	UTR5	NA
RCC_T7--1	chr19:49867043	C	NA	32	0	31	35.355	4.793	0	0	0	28	0	DKKL1	UTR5	NA
RCC_T7--2	chr19:49867043	C	NA	19	0	19	34.579	12.362	0	0	0	16	0	DKKL1	UTR5	NA
RCC_T7--3	chr19:49867043	C	NA	21	0	21	35.143	8.211	0	0	0	20	0	DKKL1	UTR5	NA
RCC_T7--4	chr19:49867043	C	A	26	0.154	22	33.409	10.720	4	33.750	2.500	19	4	DKKL1	UTR5	NA
RCC_T7--5	chr19:49867043	C	NA	20	0	19	25.368	14.818	0	0	0	11	0	DKKL1	UTR5	NA
RCC_T7--6	chr19:49867043	C	NA	21	0	21	37.095	3.239	0	0	0	21	0	DKKL1	UTR5	NA
RCC_T7--7	chr19:49867043	C	NA	40	0	40	34.650	6.518	0	0	0	37	0	DKKL1	UTR5	NA
RCC_T7--8	chr19:49867043	C	NA	26	0	26	34.731	7.433	0	0	0	24	0	DKKL1	UTR5	NA
RCC_T7--9	chr19:49867043	C	NA	31	0	31	33.161	7.510	0	0	0	27	0	DKKL1	UTR5	NA
RCC_T7--GL	chr19:49867043	C	NA	34	0	34	35.471	4.718	0	0	0	31	0	DKKL1	UTR5	NA
RCC_T7--10	chr19:53786175	G	A	86	0.256	64	35.438	5.111	22	34.864	7.605	62	21	FAM90A27P	ncRNA_intronic	NA
RCC_T7--11	chr19:53786175	G	A	109	0.110	97	35.072	5.063	12	34.667	10.586	92	11	FAM90A27P	ncRNA_intronic	NA
RCC_T7--1	chr19:53786175	G	A	96	0.135	83	35.470	6.093	13	34.385	5.516	79	12	FAM90A27P	ncRNA_intronic	NA
RCC_T7--2	chr19:53786175	G	A	84	0.202	67	34.358	7.781	17	37.000	3.021	58	16	FAM90A27P	ncRNA_intronic	NA
RCC_T7--3	chr19:53786175	G	A	91	0.220	71	34.944	7.788	20	31.900	10.361	65	17	FAM90A27P	ncRNA_intronic	NA
RCC_T7--4	chr19:53786175	G	A	67	0.313	46	35.978	5.833	21	36.762	2.468	43	21	FAM90A27P	ncRNA_intronic	NA
RCC_T7--5	chr19:53786175	G	A	109	0.156	90	33.622	8.370	17	35.765	2.658	78	17	FAM90A27P	ncRNA_intronic	NA
RCC_T7--6	chr19:53786175	G	A	101	0.129	87	32.759	8.130	13	36.846	2.577	69	13	FAM90A27P	ncRNA_intronic	NA
RCC_T7--7	chr19:53786175	G	A	82	0.256	61	35.180	6.956	21	35.476	3.544	57	20	FAM90A27P	ncRNA_intronic	NA
RCC_T7--8	chr19:53786175	G	A	80	0.087	73	35.082	5.698	7	37.000	2.582	66	7	FAM90A27P	ncRNA_intronic	NA
RCC_T7--9	chr19:53786175	G	A	84	0.071	78	34.026	8.003	6	35.167	3.061	70	5	FAM90A27P	ncRNA_intronic	NA
RCC_T7--GL	chr19:53786175	G	NA	128	0	128	34.984	4.972	0	0	0	118	0	FAM90A27P	ncRNA_intronic	NA
RCC_T7--10	chr19:54723893	C	G	27	0.037	26	35.269	7.476	1	34.000	0.000	24	1	LILRB3	intronic	NA
RCC_T7--11	chr19:54723893	C	G	38	0.053	36	27.833	14.924	2	33.500	0.707	24	2	LILRB3	intronic	NA
RCC_T7--1	chr19:54723893	C	G	60	0.117	53	32.321	9.125	7	26.714	11.644	43	4	LILRB3	intronic	NA
RCC_T7--2	chr19:54723893	C	G	46	0.087	41	32.366	11.020	4	28.250	6.994	34	1	LILRB3	intronic	NA
RCC_T7--3	chr19:54723893	C	G	57	0.175	46	30.478	12.036	10	33.700	3.129	33	8	LILRB3	intronic	NA
RCC_T7--4	chr19:54723893	C	NA	49	0	45	31.333	10.077	0	0	0	36	0	LILRB3	intronic	NA
RCC_T7--5	chr19:54723893	C	G	53	0.057	50	31.660	10.875	3	34.000	2.646	40	3	LILRB3	intronic	NA
RCC_T7--6	chr19:54723893	C	NA	43	0	41	30.463	12.118	0	0	0	29	0	LILRB3	intronic	NA
RCC_T7--7	chr19:54723893	C	G	32	0.062	30	31.033	10.746	2	35.000	2.828	23	2	LILRB3	intronic	NA
RCC_T7--8	chr19:54723893	C	G	54	0.074	50	28.640	13.621	4	29.750	6.551	32	3	LILRB3	intronic	NA
RCC_T7--9	chr19:54723893	C	NA	41	0	40	29.925	11.412	0	0	0	28	0	LILRB3	intronic	NA
RCC_T7--GL	chr19:54723893	C	G	54	0.019	52	31.404	10.438	1	29.000	0.000	39	0	LILRB3	intronic	NA
RCC_T7--10	chr19:55751203	C	T	169	0.154	142	34.824	6.869	26	32.192	11.016	134	21	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--11	chr19:55751203	C	T	150	0.147	128	33.078	9.906	22	32.636	8.567	111	19	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--1	chr19:55751203	C	T	150	0.093	135	33.904	9.226	14	32.786	10.707	119	12	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--2	chr19:55751203	C	T	125	0.112	111	33.955	8.702	14	33.500	10.021	98	12	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--3	chr19:55751203	C	T	141	0.227	109	33.431	8.817	32	35.844	5.589	92	29	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--4	chr19:55751203	C	T	144	0.118	126	32.881	9.777	17	34.471	8.931	109	16	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--5	chr19:55751203	C	T	148	0.142	125	33.448	9.434	21	33.476	9.130	111	17	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--6	chr19:55751203	C	T	101	0.119	89	33.787	9.119	12	36.917	2.746	76	12	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--7	chr19:55751203	C	T	128	0.188	103	34.437	8.713	24	34.417	7.378	94	23	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--8	chr19:55751203	C	T	113	0.080	104	34.442	7.618	9	32.778	11.840	95	8	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--9	chr19:55751203	C	T	179	0.056	169	34.450	7.475	10	36.100	3.281	150	10	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr19:55751203	C	NA	143	0	141	35.603	6.581	0	0	0	133	0	PPP6R1	exonic	nonsynonymous_SNV
RCC_T7--10	chr19:5791051	T	NA	137	0	137	33.204	8.256	0	0	0	120	0	DUS3L	intronic	NA
RCC_T7--11	chr19:5791051	T	NA	111	0	110	32.818	8.285	0	0	0	94	0	DUS3L	intronic	NA
RCC_T7--1	chr19:5791051	T	NA	120	0	120	32.675	8.363	0	0	0	98	0	DUS3L	intronic	NA
RCC_T7--2	chr19:5791051	T	G	102	0.176	84	31.726	9.205	18	31.833	8.638	68	14	DUS3L	intronic	NA
RCC_T7--3	chr19:5791051	T	NA	110	0	110	32.191	9.554	0	0	0	92	0	DUS3L	intronic	NA
RCC_T7--4	chr19:5791051	T	NA	99	0	99	31.495	9.305	0	0	0	78	0	DUS3L	intronic	NA
RCC_T7--5	chr19:5791051	T	NA	128	0	126	34.317	5.973	0	0	0	111	0	DUS3L	intronic	NA
RCC_T7--6	chr19:5791051	T	NA	134	0	134	33.127	6.938	0	0	0	112	0	DUS3L	intronic	NA
RCC_T7--7	chr19:5791051	T	NA	104	0	103	32.165	8.931	0	0	0	88	0	DUS3L	intronic	NA
RCC_T7--8	chr19:5791051	T	NA	96	0	96	31.177	10.228	0	0	0	79	0	DUS3L	intronic	NA
RCC_T7--9	chr19:5791051	T	NA	85	0	85	32.976	8.194	0	0	0	73	0	DUS3L	intronic	NA
RCC_T7--GL	chr19:5791051	T	NA	96	0	94	31.968	9.149	0	0	0	74	0	DUS3L	intronic	NA
RCC_T7--10	chr1:981024	C	NA	74	0	73	35.164	5.752	0	0	0	65	0	AGRN	intronic	NA
RCC_T7--11	chr1:981024	C	NA	87	0	87	36.184	5.125	0	0	0	84	0	AGRN	intronic	NA
RCC_T7--1	chr1:981024	C	NA	60	0	59	35.864	3.574	0	0	0	57	0	AGRN	intronic	NA
RCC_T7--2	chr1:981024	C	NA	83	0	83	35.904	3.594	0	0	0	79	0	AGRN	intronic	NA
RCC_T7--3	chr1:981024	C	T	85	0.165	71	34.338	7.657	14	34.214	5.632	63	11	AGRN	intronic	NA
RCC_T7--4	chr1:981024	C	T	91	0.187	74	36.378	4.848	17	31.353	10.741	70	14	AGRN	intronic	NA
RCC_T7--5	chr1:981024	C	T	88	0.193	71	34.479	8.776	17	32.235	8.850	66	14	AGRN	intronic	NA
RCC_T7--6	chr1:981024	C	T	88	0.159	74	34.568	9.605	14	37.071	2.731	67	14	AGRN	intronic	NA
RCC_T7--7	chr1:981024	C	NA	65	0	65	36.446	3.666	0	0	0	62	0	AGRN	intronic	NA
RCC_T7--8	chr1:981024	C	NA	76	0	75	35.773	5.511	0	0	0	69	0	AGRN	intronic	NA
RCC_T7--9	chr1:981024	C	NA	73	0	72	33.833	8.958	0	0	0	62	0	AGRN	intronic	NA
RCC_T7--GL	chr1:981024	C	NA	85	0	85	35.541	6.641	0	0	0	79	0	AGRN	intronic	NA
RCC_T7--10	chr21:41032723	G	NA	110	0	109	34.807	8.746	0	0	0	98	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--11	chr21:41032723	G	NA	129	0	129	36.008	7.215	0	0	0	118	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--1	chr21:41032723	G	NA	111	0	111	36.252	7.938	0	0	0	104	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--2	chr21:41032723	G	NA	85	0	85	37.176	4.804	0	0	0	80	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--3	chr21:41032723	G	C	113	0.168	93	32.796	11.319	19	34.368	10.479	78	16	B3GALT5	exonic	synonymous_SNV
RCC_T7--4	chr21:41032723	G	C	112	0.161	92	34.304	8.789	18	36.167	5.823	81	16	B3GALT5	exonic	synonymous_SNV
RCC_T7--5	chr21:41032723	G	C	129	0.163	108	36.361	6.514	21	37.857	2.954	97	21	B3GALT5	exonic	synonymous_SNV
RCC_T7--6	chr21:41032723	G	C	100	0.160	84	37.214	5.001	16	36.625	3.631	81	16	B3GALT5	exonic	synonymous_SNV
RCC_T7--7	chr21:41032723	G	NA	109	0	109	36.358	6.731	0	0	0	104	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--8	chr21:41032723	G	NA	115	0	115	35.530	7.045	0	0	0	104	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--9	chr21:41032723	G	NA	102	0	102	36.176	7.627	0	0	0	94	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--GL	chr21:41032723	G	NA	129	0	129	35.969	8.015	0	0	0	119	0	B3GALT5	exonic	synonymous_SNV
RCC_T7--10	chr2:148716021	C	NA	29	0	29	38.931	4.026	0	0	0	28	0	ORC4	intronic	NA
RCC_T7--11	chr2:148716021	C	NA	38	0	38	39.000	2.105	0	0	0	38	0	ORC4	intronic	NA
RCC_T7--1	chr2:148716021	C	NA	60	0	56	38.304	5.615	0	0	0	54	0	ORC4	intronic	NA
RCC_T7--2	chr2:148716021	C	NA	40	0	40	37.475	4.679	0	0	0	39	0	ORC4	intronic	NA
RCC_T7--3	chr2:148716021	C	NA	32	0	32	38.719	4.538	0	0	0	31	0	ORC4	intronic	NA
RCC_T7--4	chr2:148716021	C	NA	29	0	29	36.483	7.472	0	0	0	27	0	ORC4	intronic	NA
RCC_T7--5	chr2:148716021	C	NA	44	0	44	37.977	4.185	0	0	0	41	0	ORC4	intronic	NA
RCC_T7--6	chr2:148716021	C	NA	23	0	23	38.217	3.044	0	0	0	23	0	ORC4	intronic	NA
RCC_T7--7	chr2:148716021	C	A	29	0.138	25	37.440	4.001	4	39.000	2.309	24	4	ORC4	intronic	NA
RCC_T7--8	chr2:148716021	C	NA	29	0	29	37.655	5.052	0	0	0	27	0	ORC4	intronic	NA
RCC_T7--9	chr2:148716021	C	NA	43	0	43	38.860	2.624	0	0	0	42	0	ORC4	intronic	NA
RCC_T7--GL	chr2:148716021	C	NA	52	0	51	39.510	2.148	0	0	0	51	0	ORC4	intronic	NA
RCC_T7--10	chr2:220045449	C	NA	207	0	205	36.605	5.257	0	0	0	194	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--11	chr2:220045449	C	NA	181	0	179	36.715	4.831	0	0	0	167	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--1	chr2:220045449	C	NA	213	0	211	35.133	7.685	0	0	0	188	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--2	chr2:220045449	C	T	158	0.184	129	34.333	9.134	29	38.931	2.987	111	29	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--3	chr2:220045449	C	NA	231	0	228	35.197	7.352	0	0	0	203	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--4	chr2:220045449	C	NA	191	0	189	34.804	8.296	0	0	0	169	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--5	chr2:220045449	C	NA	227	0	226	35.566	6.866	0	0	0	204	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--6	chr2:220045449	C	NA	177	0	177	34.458	8.630	0	0	0	157	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--7	chr2:220045449	C	NA	223	0	223	35.677	6.913	0	0	0	204	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--8	chr2:220045449	C	NA	169	0	169	35.947	6.588	0	0	0	156	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--9	chr2:220045449	C	NA	194	0	194	35.990	7.216	0	0	0	180	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--GL	chr2:220045449	C	NA	192	0	190	35.337	8.099	0	0	0	170	0	FAM134A	exonic	nonsynonymous_SNV
RCC_T7--10	chr2:220107010	T	NA	21	0	21	34.000	10.218	0	0	0	18	0	GLB1L	intronic	NA
RCC_T7--11	chr2:220107010	T	NA	32	0	32	35.625	6.036	0	0	0	31	0	GLB1L	intronic	NA
RCC_T7--1	chr2:220107010	T	C	29	0.034	28	35.214	7.525	1	31.000	0.000	25	1	GLB1L	intronic	NA
RCC_T7--2	chr2:220107010	T	C	32	0.031	31	34.000	9.367	1	34.000	0.000	23	1	GLB1L	intronic	NA
RCC_T7--3	chr2:220107010	T	NA	22	0	22	34.636	8.307	0	0	0	19	0	GLB1L	intronic	NA
RCC_T7--4	chr2:220107010	T	C	24	0.292	17	36.588	3.759	7	33.000	1.414	16	7	GLB1L	intronic	NA
RCC_T7--5	chr2:220107010	T	NA	20	0	20	34.400	8.882	0	0	0	17	0	GLB1L	intronic	NA
RCC_T7--6	chr2:220107010	T	C	14	0.071	11	36.364	3.776	1	34.000	0.000	11	1	GLB1L	intronic	NA
RCC_T7--7	chr2:220107010	T	NA	16	0	16	35.812	4.070	0	0	0	15	0	GLB1L	intronic	NA
RCC_T7--8	chr2:220107010	T	C	28	0.036	26	36.346	7.381	1	34.000	0.000	25	1	GLB1L	intronic	NA
RCC_T7--9	chr2:220107010	T	NA	29	0	29	35.448	7.609	0	0	0	26	0	GLB1L	intronic	NA
RCC_T7--GL	chr2:220107010	T	NA	35	0	35	37.057	5.017	0	0	0	34	0	GLB1L	intronic	NA
RCC_T7--10	chr2:228131896	A	NA	103	0	102	37.637	4.677	0	0	0	98	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--11	chr2:228131896	A	NA	91	0	91	36.813	3.944	0	0	0	88	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--1	chr2:228131896	A	NA	89	0	89	36.629	6.277	0	0	0	86	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--2	chr2:228131896	A	NA	70	0	70	36.743	5.760	0	0	0	68	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--3	chr2:228131896	A	G	91	0.198	72	37.014	6.339	18	38.611	2.704	68	18	AC097662.2	ncRNA_intronic	NA
RCC_T7--4	chr2:228131896	A	G	88	0.170	73	36.384	7.092	15	37.667	4.203	68	14	AC097662.2	ncRNA_intronic	NA
RCC_T7--5	chr2:228131896	A	G	99	0.212	78	37.885	3.024	21	35.476	8.310	76	20	AC097662.2	ncRNA_intronic	NA
RCC_T7--6	chr2:228131896	A	G	68	0.221	53	35.774	6.320	15	32.600	12.034	48	11	AC097662.2	ncRNA_intronic	NA
RCC_T7--7	chr2:228131896	A	NA	80	0	79	37.215	5.681	0	0	0	75	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--8	chr2:228131896	A	NA	81	0	81	36.407	5.733	0	0	0	73	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--9	chr2:228131896	A	NA	100	0	100	37.050	5.056	0	0	0	95	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--GL	chr2:228131896	A	NA	94	0	94	35.819	6.998	0	0	0	85	0	AC097662.2	ncRNA_intronic	NA
RCC_T7--10	chr3:130134574	G	NA	39	0	39	37.590	3.470	0	0	0	38	0	COL6A5	intronic	NA
RCC_T7--11	chr3:130134574	G	C	40	0.225	31	37.387	6.438	9	31.000	11.843	29	7	COL6A5	intronic	NA
RCC_T7--1	chr3:130134574	G	C	45	0.111	40	37.100	4.290	5	37.600	1.673	37	5	COL6A5	intronic	NA
RCC_T7--2	chr3:130134574	G	NA	33	0	33	37.394	6.982	0	0	0	32	0	COL6A5	intronic	NA
RCC_T7--3	chr3:130134574	G	NA	21	0	20	33.150	9.848	0	0	0	16	0	COL6A5	intronic	NA
RCC_T7--4	chr3:130134574	G	NA	23	0	23	35.174	5.087	0	0	0	21	0	COL6A5	intronic	NA
RCC_T7--5	chr3:130134574	G	NA	40	0	40	37.700	4.071	0	0	0	38	0	COL6A5	intronic	NA
RCC_T7--6	chr3:130134574	G	NA	30	0	28	34.964	8.122	0	0	0	24	0	COL6A5	intronic	NA
RCC_T7--7	chr3:130134574	G	NA	23	0	23	38.348	2.790	0	0	0	23	0	COL6A5	intronic	NA
RCC_T7--8	chr3:130134574	G	NA	30	0	30	36.467	4.876	0	0	0	28	0	COL6A5	intronic	NA
RCC_T7--9	chr3:130134574	G	NA	30	0	30	37.567	3.245	0	0	0	29	0	COL6A5	intronic	NA
RCC_T7--GL	chr3:130134574	G	NA	60	0	60	37.367	3.151	0	0	0	58	0	COL6A5	intronic	NA
RCC_T7--10	chr3:130141580	C	G	48	0.229	37	35.000	10.806	11	37.000	3.924	33	11	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--11	chr3:130141580	C	NA	59	0	59	37.966	4.386	0	0	0	53	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--1	chr3:130141580	C	NA	63	0	63	35.921	8.386	0	0	0	58	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--2	chr3:130141580	C	NA	47	0	47	37.660	4.254	0	0	0	44	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--3	chr3:130141580	C	NA	56	0	56	36.268	6.789	0	0	0	51	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--4	chr3:130141580	C	NA	61	0	61	36.951	5.104	0	0	0	55	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--5	chr3:130141580	C	NA	60	0	59	36.068	9.485	0	0	0	53	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--6	chr3:130141580	C	NA	43	0	43	38.605	3.245	0	0	0	42	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--7	chr3:130141580	C	NA	61	0	61	37.689	3.914	0	0	0	59	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--8	chr3:130141580	C	NA	50	0	50	35.460	8.355	0	0	0	45	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--9	chr3:130141580	C	NA	73	0	73	38.493	3.363	0	0	0	71	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--GL	chr3:130141580	C	NA	71	0	71	37.225	4.530	0	0	0	68	0	COL6A5	exonic	nonsynonymous_SNV
RCC_T7--10	chr3:141595493	C	G	59	0.322	40	31.825	10.631	19	33.895	5.363	35	17	ATP1B3	UTR5	NA
RCC_T7--11	chr3:141595493	C	NA	51	0	51	29.098	12.236	0	0	0	40	0	ATP1B3	UTR5	NA
RCC_T7--1	chr3:141595493	C	NA	73	0	73	29.055	11.935	0	0	0	56	0	ATP1B3	UTR5	NA
RCC_T7--2	chr3:141595493	C	NA	71	0	71	31.789	10.289	0	0	0	61	0	ATP1B3	UTR5	NA
RCC_T7--3	chr3:141595493	C	NA	63	0	63	29.397	12.120	0	0	0	48	0	ATP1B3	UTR5	NA
RCC_T7--4	chr3:141595493	C	NA	47	0	47	32.447	9.174	0	0	0	41	0	ATP1B3	UTR5	NA
RCC_T7--5	chr3:141595493	C	NA	92	0	92	28.141	13.013	0	0	0	65	0	ATP1B3	UTR5	NA
RCC_T7--6	chr3:141595493	C	NA	46	0	46	29.913	10.271	0	0	0	35	0	ATP1B3	UTR5	NA
RCC_T7--7	chr3:141595493	C	NA	48	0	48	29.292	12.515	0	0	0	36	0	ATP1B3	UTR5	NA
RCC_T7--8	chr3:141595493	C	NA	58	0	58	30.621	11.363	0	0	0	47	0	ATP1B3	UTR5	NA
RCC_T7--9	chr3:141595493	C	NA	52	0	52	27.269	13.579	0	0	0	36	0	ATP1B3	UTR5	NA
RCC_T7--GL	chr3:141595493	C	NA	74	0	74	30.986	11.728	0	0	0	61	0	ATP1B3	UTR5	NA
RCC_T7--10	chr3:145794620	G	NA	92	0	92	38.261	6.128	0	0	0	88	0	PLOD2	exonic	stopgain_SNV
RCC_T7--11	chr3:145794620	G	NA	68	0	68	38.456	4.237	0	0	0	66	0	PLOD2	exonic	stopgain_SNV
RCC_T7--1	chr3:145794620	G	NA	103	0	100	37.740	5.782	0	0	0	94	0	PLOD2	exonic	stopgain_SNV
RCC_T7--2	chr3:145794620	G	NA	75	0	75	38.387	3.827	0	0	0	73	0	PLOD2	exonic	stopgain_SNV
RCC_T7--3	chr3:145794620	G	T	93	0.183	76	36.618	7.784	17	38.588	2.671	72	17	PLOD2	exonic	stopgain_SNV
RCC_T7--4	chr3:145794620	G	T	69	0.203	55	38.455	3.265	14	39.143	1.916	54	14	PLOD2	exonic	stopgain_SNV
RCC_T7--5	chr3:145794620	G	T	93	0.151	79	38.354	5.015	14	36.143	10.152	76	13	PLOD2	exonic	stopgain_SNV
RCC_T7--6	chr3:145794620	G	T	73	0.068	68	37.662	6.300	5	32.800	13.918	65	4	PLOD2	exonic	stopgain_SNV
RCC_T7--7	chr3:145794620	G	NA	87	0	87	37.977	5.549	0	0	0	83	0	PLOD2	exonic	stopgain_SNV
RCC_T7--8	chr3:145794620	G	NA	72	0	72	38.986	2.554	0	0	0	72	0	PLOD2	exonic	stopgain_SNV
RCC_T7--9	chr3:145794620	G	NA	70	0	70	37.929	5.162	0	0	0	69	0	PLOD2	exonic	stopgain_SNV
RCC_T7--GL	chr3:145794620	G	NA	104	0	104	38.231	5.599	0	0	0	100	0	PLOD2	exonic	stopgain_SNV
RCC_T7--10	chr3:186947462	C	A	89	0.146	75	37.560	5.269	13	38.385	3.927	72	12	MASP1	intronic	NA
RCC_T7--11	chr3:186947462	C	A	70	0.114	62	36.258	7.492	8	36.000	2.928	58	8	MASP1	intronic	NA
RCC_T7--1	chr3:186947462	C	A	70	0.200	56	37.125	4.239	14	32.786	9.940	52	12	MASP1	intronic	NA
RCC_T7--2	chr3:186947462	C	A	80	0.175	66	36.667	6.335	14	35.500	6.688	63	12	MASP1	intronic	NA
RCC_T7--3	chr3:186947462	C	A	101	0.099	91	35.484	8.445	10	32.900	11.406	80	8	MASP1	intronic	NA
RCC_T7--4	chr3:186947462	C	A	83	0.108	74	35.743	8.969	9	35.333	2.398	68	9	MASP1	intronic	NA
RCC_T7--5	chr3:186947462	C	A	119	0.151	101	33.683	10.069	18	34.556	8.389	88	14	MASP1	intronic	NA
RCC_T7--6	chr3:186947462	C	A	61	0.230	47	37.809	3.301	14	36.857	4.130	47	13	MASP1	intronic	NA
RCC_T7--7	chr3:186947462	C	A	74	0.176	61	34.770	9.442	13	35.308	10.766	53	11	MASP1	intronic	NA
RCC_T7--8	chr3:186947462	C	A	93	0.129	81	36.975	5.561	12	37.917	3.801	78	11	MASP1	intronic	NA
RCC_T7--9	chr3:186947462	C	A	66	0.106	58	36.362	5.736	7	37.714	2.690	52	7	MASP1	intronic	NA
RCC_T7--GL	chr3:186947462	C	NA	105	0	104	36.433	6.896	0	0	0	97	0	MASP1	intronic	NA
RCC_T7--10	chr3:195518119	A	T	79	0.152	67	35.313	7.995	12	32.500	2.812	61	11	MUC4	exonic	nonsynonymous_SNV
RCC_T7--11	chr3:195518119	A	T	89	0.079	81	36.395	5.565	7	32.857	2.673	77	6	MUC4	exonic	nonsynonymous_SNV
RCC_T7--1	chr3:195518119	A	T	89	0.079	82	36.659	5.195	7	34.429	0.535	79	7	MUC4	exonic	nonsynonymous_SNV
RCC_T7--2	chr3:195518119	A	T	75	0.053	71	35.268	9.043	4	30.750	4.646	64	2	MUC4	exonic	nonsynonymous_SNV
RCC_T7--3	chr3:195518119	A	T	78	0.141	66	35.136	8.666	11	31.455	3.616	59	9	MUC4	exonic	nonsynonymous_SNV
RCC_T7--4	chr3:195518119	A	T	74	0.095	66	35.318	7.209	7	25.000	15.727	60	5	MUC4	exonic	nonsynonymous_SNV
RCC_T7--5	chr3:195518119	A	T	88	0.114	78	36.513	4.967	10	30.500	10.223	73	9	MUC4	exonic	nonsynonymous_SNV
RCC_T7--6	chr3:195518119	A	T	75	0.067	70	34.314	8.722	5	33.200	2.387	64	4	MUC4	exonic	nonsynonymous_SNV
RCC_T7--7	chr3:195518119	A	T	73	0.151	62	34.726	9.489	11	34.636	1.629	57	11	MUC4	exonic	nonsynonymous_SNV
RCC_T7--8	chr3:195518119	A	T	90	0.033	87	35.034	8.283	3	34.333	0.577	78	3	MUC4	exonic	nonsynonymous_SNV
RCC_T7--9	chr3:195518119	A	T	85	0.071	79	36.165	5.302	6	28.333	12.972	75	5	MUC4	exonic	nonsynonymous_SNV
RCC_T7--GL	chr3:195518119	A	NA	68	0	67	34.597	9.587	0	0	0	59	0	MUC4	exonic	nonsynonymous_SNV
RCC_T7--10	chr3:384760	T	G	127	0.213	100	38.450	5.219	27	38.741	3.381	98	26	CHL1	intronic	NA
RCC_T7--11	chr3:384760	T	G	133	0.195	106	37.245	7.375	26	38.577	2.564	102	26	CHL1	intronic	NA
RCC_T7--1	chr3:384760	T	G	119	0.311	82	37.378	5.977	37	38.568	3.236	75	36	CHL1	intronic	NA
RCC_T7--2	chr3:384760	T	NA	86	0	86	39.081	2.170	0	0	0	86	0	CHL1	intronic	NA
RCC_T7--3	chr3:384760	T	G	115	0.270	83	36.831	7.218	31	36.323	5.997	77	29	CHL1	intronic	NA
RCC_T7--4	chr3:384760	T	G	125	0.168	101	38.010	4.924	21	38.000	3.000	96	21	CHL1	intronic	NA
RCC_T7--5	chr3:384760	T	G	126	0.214	99	37.515	4.548	27	38.630	3.671	97	26	CHL1	intronic	NA
RCC_T7--6	chr3:384760	T	G	96	0.198	77	37.506	6.435	19	38.474	2.816	75	19	CHL1	intronic	NA
RCC_T7--7	chr3:384760	T	G	113	0.150	96	38.094	3.353	17	38.176	2.856	94	17	CHL1	intronic	NA
RCC_T7--8	chr3:384760	T	G	88	0.205	70	38.200	5.423	18	38.278	2.761	68	18	CHL1	intronic	NA
RCC_T7--9	chr3:384760	T	G	137	0.080	126	36.563	8.967	11	37.909	2.809	115	11	CHL1	intronic	NA
RCC_T7--GL	chr3:384760	T	NA	158	0	157	38.745	2.415	0	0	0	157	0	CHL1	intronic	NA
RCC_T7--10	chr3:42635973	C	NA	26	0	26	36.692	6.355	0	0	0	24	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--11	chr3:42635973	C	A	26	0.154	22	37.773	3.585	4	40.500	0.577	21	4	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--1	chr3:42635973	C	NA	27	0	27	35.778	7.313	0	0	0	23	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--2	chr3:42635973	C	NA	26	0	26	37.808	2.698	0	0	0	26	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--3	chr3:42635973	C	NA	24	0	24	37.583	7.907	0	0	0	23	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--4	chr3:42635973	C	NA	16	0	15	34.467	8.193	0	0	0	13	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--5	chr3:42635973	C	NA	32	0	32	36.781	6.344	0	0	0	29	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--6	chr3:42635973	C	NA	22	0	22	37.318	3.670	0	0	0	22	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--7	chr3:42635973	C	NA	27	0	27	33.926	10.891	0	0	0	22	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--8	chr3:42635973	C	NA	31	0	31	36.419	3.956	0	0	0	29	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--9	chr3:42635973	C	NA	28	0	28	36.714	8.073	0	0	0	26	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--GL	chr3:42635973	C	NA	35	0	35	36.829	5.338	0	0	0	32	0	SS18L2	exonic	nonsynonymous_SNV
RCC_T7--10	chr3:52643542	A	NA	108	0	108	38.324	4.684	0	0	0	105	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--11	chr3:52643542	A	NA	99	0	97	37.247	5.460	0	0	0	91	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--1	chr3:52643542	A	NA	113	0	112	36.455	7.453	0	0	0	105	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--2	chr3:52643542	A	NA	97	0	97	37.856	3.824	0	0	0	95	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--3	chr3:52643542	A	C	124	0.169	103	35.029	9.299	21	36.857	2.954	91	21	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--4	chr3:52643542	A	C	121	0.248	91	37.418	5.358	30	37.967	3.899	86	29	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--5	chr3:52643542	A	C	126	0.302	88	36.932	7.670	38	38.079	3.088	80	38	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--6	chr3:52643542	A	C	90	0.178	74	36.905	7.137	16	38.750	2.696	68	16	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--7	chr3:52643542	A	NA	134	0	134	38.254	4.242	0	0	0	130	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--8	chr3:52643542	A	NA	98	0	97	37.732	4.520	0	0	0	94	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--9	chr3:52643542	A	NA	136	0	136	37.059	6.134	0	0	0	128	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr3:52643542	A	NA	113	0	113	37.035	6.941	0	0	0	107	0	PBRM1	exonic	nonsynonymous_SNV
RCC_T7--10	chr4:25390157	C	NA	276	0	276	38.065	4.312	0	0	0	269	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--11	chr4:25390157	C	NA	226	0	225	37.489	6.010	0	0	0	216	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--1	chr4:25390157	C	NA	292	0	291	37.729	5.454	0	0	0	279	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--2	chr4:25390157	C	NA	247	0	245	37.902	4.286	0	0	0	237	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--3	chr4:25390157	C	G	234	0.192	188	38.005	4.081	45	37.311	7.029	183	42	ANAPC4	exonic	stopgain_SNV
RCC_T7--4	chr4:25390157	C	G	265	0.196	213	37.460	6.650	52	36.115	7.975	205	48	ANAPC4	exonic	stopgain_SNV
RCC_T7--5	chr4:25390157	C	G	265	0.166	221	37.357	5.280	44	37.977	3.324	208	43	ANAPC4	exonic	stopgain_SNV
RCC_T7--6	chr4:25390157	C	G	242	0.145	205	37.785	5.259	35	35.800	8.808	195	33	ANAPC4	exonic	stopgain_SNV
RCC_T7--7	chr4:25390157	C	NA	310	0	309	37.518	5.866	0	0	0	296	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--8	chr4:25390157	C	NA	216	0	215	37.833	5.201	0	0	0	209	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--9	chr4:25390157	C	NA	241	0	239	37.674	5.068	0	0	0	229	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--GL	chr4:25390157	C	NA	244	0	242	37.814	4.635	0	0	0	238	0	ANAPC4	exonic	stopgain_SNV
RCC_T7--10	chr4:3430264	T	NA	24	0	24	37.375	3.160	0	0	0	23	0	RGS12	intronic	NA
RCC_T7--11	chr4:3430264	T	NA	32	0	32	39.000	3.111	0	0	0	32	0	RGS12	intronic	NA
RCC_T7--1	chr4:3430264	T	NA	56	0	55	36.855	7.553	0	0	0	52	0	RGS12	intronic	NA
RCC_T7--2	chr4:3430264	T	A	22	0.273	16	39.188	2.401	6	38.167	4.309	16	6	RGS12	intronic	NA
RCC_T7--3	chr4:3430264	T	NA	27	0	27	37.630	4.491	0	0	0	26	0	RGS12	intronic	NA
RCC_T7--4	chr4:3430264	T	NA	26	0	26	37.462	3.420	0	0	0	26	0	RGS12	intronic	NA
RCC_T7--5	chr4:3430264	T	NA	37	0	37	38.324	2.261	0	0	0	37	0	RGS12	intronic	NA
RCC_T7--6	chr4:3430264	T	NA	32	0	32	37.812	2.717	0	0	0	32	0	RGS12	intronic	NA
RCC_T7--7	chr4:3430264	T	NA	17	0	17	37.059	6.005	0	0	0	15	0	RGS12	intronic	NA
RCC_T7--8	chr4:3430264	T	NA	20	0	20	39.750	1.713	0	0	0	20	0	RGS12	intronic	NA
RCC_T7--9	chr4:3430264	T	NA	26	0	26	37.308	4.222	0	0	0	24	0	RGS12	intronic	NA
RCC_T7--GL	chr4:3430264	T	NA	36	0	36	37.083	7.157	0	0	0	34	0	RGS12	intronic	NA
RCC_T7--10	chr4:57204471	A	C	32	0.062	30	37.833	3.030	2	35.500	2.121	30	2	AASDH	UTR3	NA
RCC_T7--11	chr4:57204471	A	C	37	0.027	36	37.694	3.197	1	34.000	0.000	36	1	AASDH	UTR3	NA
RCC_T7--1	chr4:57204471	A	NA	46	0	44	36.705	7.672	0	0	0	41	0	AASDH	UTR3	NA
RCC_T7--2	chr4:57204471	A	C	37	0.027	36	37.694	4.603	1	31.000	0.000	35	1	AASDH	UTR3	NA
RCC_T7--3	chr4:57204471	A	C	22	0.045	21	37.762	3.315	1	31.000	0.000	20	1	AASDH	UTR3	NA
RCC_T7--4	chr4:57204471	A	C	27	0.074	25	37.640	5.114	2	37.000	0.000	24	2	AASDH	UTR3	NA
RCC_T7--5	chr4:57204471	A	C	62	0.016	61	37.705	3.480	1	34.000	0.000	60	1	AASDH	UTR3	NA
RCC_T7--6	chr4:57204471	A	C	20	0.200	16	35.938	9.413	4	34.000	0.000	15	4	AASDH	UTR3	NA
RCC_T7--7	chr4:57204471	A	NA	19	0	19	38.526	2.894	0	0	0	19	0	AASDH	UTR3	NA
RCC_T7--8	chr4:57204471	A	C	29	0.069	27	37.111	7.557	2	32.000	1.414	26	2	AASDH	UTR3	NA
RCC_T7--9	chr4:57204471	A	C	30	0.133	26	36.923	7.563	4	33.750	3.775	25	4	AASDH	UTR3	NA
RCC_T7--GL	chr4:57204471	A	NA	57	0	56	38.786	3.420	0	0	0	55	0	AASDH	UTR3	NA
RCC_T7--10	chr5:125887777	C	NA	81	0	80	36.475	5.625	0	0	0	76	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--11	chr5:125887777	C	NA	55	0	55	34.618	8.808	0	0	0	49	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--1	chr5:125887777	C	NA	65	0	65	35.323	7.736	0	0	0	58	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--2	chr5:125887777	C	NA	59	0	59	36.831	3.206	0	0	0	58	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--3	chr5:125887777	C	T	62	0.177	51	34.529	9.671	11	31.364	8.846	45	9	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--4	chr5:125887777	C	T	64	0.172	53	34.585	8.628	11	33.000	10.807	46	10	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--5	chr5:125887777	C	T	98	0.092	89	34.124	9.004	9	35.111	2.713	75	9	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--6	chr5:125887777	C	T	60	0.050	57	35.053	7.687	3	34.000	4.583	51	2	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--7	chr5:125887777	C	NA	72	0	72	33.958	10.226	0	0	0	64	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--8	chr5:125887777	C	NA	56	0	55	33.836	9.754	0	0	0	47	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--9	chr5:125887777	C	NA	76	0	75	36.133	5.280	0	0	0	71	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr5:125887777	C	NA	66	0	66	34.288	8.668	0	0	0	58	0	ALDH7A1	exonic	nonsynonymous_SNV
RCC_T7--10	chr5:176025608	G	NA	168	0	167	36.204	7.671	0	0	0	156	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--11	chr5:176025608	G	NA	223	0	223	36.794	5.311	0	0	0	212	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--1	chr5:176025608	G	NA	235	0	235	35.753	7.827	0	0	0	212	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--2	chr5:176025608	G	NA	176	0	176	36.233	6.405	0	0	0	167	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--3	chr5:176025608	G	A	234	0.162	194	34.995	8.483	38	35.816	6.526	173	36	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--4	chr5:176025608	G	A	193	0.130	167	34.665	8.566	25	34.600	8.088	146	22	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--5	chr5:176025608	G	A	200	0.140	172	35.866	8.083	28	37.464	3.873	151	26	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--6	chr5:176025608	G	A	177	0.158	149	36.423	6.425	28	36.179	2.763	140	28	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--7	chr5:176025608	G	NA	219	0	219	35.603	7.581	0	0	0	201	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--8	chr5:176025608	G	NA	146	0	145	36.062	6.538	0	0	0	134	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--9	chr5:176025608	G	NA	184	0	184	37.016	5.154	0	0	0	173	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr5:176025608	G	NA	147	0	147	36.082	7.072	0	0	0	139	0	GPRIN1	exonic	nonsynonymous_SNV
RCC_T7--10	chr5:176862003	G	C	105	0.019	51	34.275	7.524	2	34.000	0.000	46	2	GRK6	intronic	NA
RCC_T7--11	chr5:176862003	G	C	98	0.020	34	33.706	9.024	2	35.500	2.121	29	2	GRK6	intronic	NA
RCC_T7--1	chr5:176862003	G	C	131	0.046	61	33.148	10.353	6	24.333	17.363	52	4	GRK6	intronic	NA
RCC_T7--2	chr5:176862003	G	NA	109	0	50	34.660	9.464	0	0	0	45	0	GRK6	intronic	NA
RCC_T7--3	chr5:176862003	G	C	146	0.048	53	35.868	6.403	7	31.286	5.851	50	5	GRK6	intronic	NA
RCC_T7--4	chr5:176862003	G	C	122	0.082	67	32.433	9.225	10	30.300	10.678	58	8	GRK6	intronic	NA
RCC_T7--5	chr5:176862003	G	C	110	0.082	41	34.683	8.484	9	30.333	10.805	37	8	GRK6	intronic	NA
RCC_T7--6	chr5:176862003	G	C	113	0.071	47	33.681	9.457	8	31.000	11.784	41	7	GRK6	intronic	NA
RCC_T7--7	chr5:176862003	G	C	110	0.018	50	33.640	9.587	2	36.000	1.414	44	2	GRK6	intronic	NA
RCC_T7--8	chr5:176862003	G	NA	72	0	39	34.359	6.968	0	0	0	37	0	GRK6	intronic	NA
RCC_T7--9	chr5:176862003	G	C	107	0.047	58	34.000	6.895	5	33.600	2.608	54	5	GRK6	intronic	NA
RCC_T7--GL	chr5:176862003	G	NA	83	0	60	35.383	7.323	0	0	0	56	0	GRK6	intronic	NA
RCC_T7--10	chr5:74078809	C	NA	67	0	67	36.836	6.503	0	0	0	63	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--11	chr5:74078809	C	NA	79	0	79	36.759	7.571	0	0	0	76	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--1	chr5:74078809	C	NA	82	0	82	35.951	7.706	0	0	0	75	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--2	chr5:74078809	C	NA	55	0	54	38.407	3.494	0	0	0	53	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--3	chr5:74078809	C	A	55	0.236	42	36.548	8.279	13	34.769	10.281	40	12	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--4	chr5:74078809	C	A	51	0.157	43	35.767	8.220	8	37.000	3.381	41	8	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--5	chr5:74078809	C	A	96	0.188	78	35.897	7.827	18	38.611	3.109	72	18	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--6	chr5:74078809	C	A	47	0.085	43	37.000	3.625	4	36.750	2.872	42	4	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--7	chr5:74078809	C	NA	28	0	28	38.107	4.417	0	0	0	26	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--8	chr5:74078809	C	NA	68	0	68	37.250	6.995	0	0	0	64	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--9	chr5:74078809	C	A	84	0.012	83	36.386	6.771	1	41.000	0.000	78	1	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--GL	chr5:74078809	C	NA	93	0	90	36.256	7.519	0	0	0	84	0	FAM169A	exonic	nonsynonymous_SNV
RCC_T7--10	chr5:80160599	T	A	30	0.033	17	37.176	3.861	1	34.000	0.000	17	1	MSH3	intronic	NA
RCC_T7--11	chr5:80160599	T	A	37	0.027	21	38.333	2.726	1	31.000	0.000	21	1	MSH3	intronic	NA
RCC_T7--1	chr5:80160599	T	A	53	0.019	29	36.690	7.512	1	34.000	0.000	27	1	MSH3	intronic	NA
RCC_T7--2	chr5:80160599	T	A	32	0.125	15	32.667	12.971	4	33.500	2.380	13	4	MSH3	intronic	NA
RCC_T7--3	chr5:80160599	T	NA	24	0	13	38.385	2.434	0	0	0	13	0	MSH3	intronic	NA
RCC_T7--4	chr5:80160599	T	A	42	0.048	27	35.852	6.832	2	34.000	0.000	25	2	MSH3	intronic	NA
RCC_T7--5	chr5:80160599	T	A	55	0.036	38	37.158	5.201	2	34.000	0.000	36	2	MSH3	intronic	NA
RCC_T7--6	chr5:80160599	T	A	20	0.200	9	37.556	3.609	4	22.500	14.434	9	2	MSH3	intronic	NA
RCC_T7--7	chr5:80160599	T	A	16	0.125	11	37.182	3.628	2	34.000	0.000	11	2	MSH3	intronic	NA
RCC_T7--8	chr5:80160599	T	A	25	0.040	14	38.071	2.093	1	34.000	0.000	14	1	MSH3	intronic	NA
RCC_T7--9	chr5:80160599	T	A	24	0.083	9	36.778	5.167	2	34.000	0.000	8	2	MSH3	intronic	NA
RCC_T7--GL	chr5:80160599	T	NA	61	0	37	38.351	3.102	0	0	0	36	0	MSH3	intronic	NA
RCC_T7--10	chr6:138752332	G	NA	115	0	115	35.122	7.132	0	0	0	104	0	NHSL1	exonic	synonymous_SNV
RCC_T7--11	chr6:138752332	G	NA	136	0	134	35.015	6.993	0	0	0	124	0	NHSL1	exonic	synonymous_SNV
RCC_T7--1	chr6:138752332	G	NA	118	0	116	35.302	6.868	0	0	0	108	0	NHSL1	exonic	synonymous_SNV
RCC_T7--2	chr6:138752332	G	NA	121	0	119	34.034	8.000	0	0	0	103	0	NHSL1	exonic	synonymous_SNV
RCC_T7--3	chr6:138752332	G	A	103	0.233	78	36.359	5.446	24	33.833	10.433	73	21	NHSL1	exonic	synonymous_SNV
RCC_T7--4	chr6:138752332	G	A	137	0.153	116	34.836	6.591	21	36.143	7.178	105	20	NHSL1	exonic	synonymous_SNV
RCC_T7--5	chr6:138752332	G	A	142	0.148	121	35.876	5.643	21	33.810	8.495	117	17	NHSL1	exonic	synonymous_SNV
RCC_T7--6	chr6:138752332	G	A	120	0.192	97	34.052	7.638	23	34.739	7.605	88	22	NHSL1	exonic	synonymous_SNV
RCC_T7--7	chr6:138752332	G	NA	93	0	93	35.559	6.632	0	0	0	85	0	NHSL1	exonic	synonymous_SNV
RCC_T7--8	chr6:138752332	G	NA	104	0	104	34.923	7.381	0	0	0	96	0	NHSL1	exonic	synonymous_SNV
RCC_T7--9	chr6:138752332	G	NA	118	0	118	35.449	6.282	0	0	0	112	0	NHSL1	exonic	synonymous_SNV
RCC_T7--GL	chr6:138752332	G	NA	160	0	159	35.836	5.704	0	0	0	150	0	NHSL1	exonic	synonymous_SNV
RCC_T7--10	chr6:165843840	T	NA	96	0	95	37.884	5.175	0	0	0	91	0	PDE10A	intronic	NA
RCC_T7--11	chr6:165843840	T	NA	102	0	101	37.366	6.604	0	0	0	97	0	PDE10A	intronic	NA
RCC_T7--1	chr6:165843840	T	NA	96	0	96	38.031	3.749	0	0	0	92	0	PDE10A	intronic	NA
RCC_T7--2	chr6:165843840	T	NA	80	0	80	38.663	2.700	0	0	0	80	0	PDE10A	intronic	NA
RCC_T7--3	chr6:165843840	T	C	118	0.229	91	37.055	6.197	27	34.111	11.998	86	24	PDE10A	intronic	NA
RCC_T7--4	chr6:165843840	T	C	115	0.165	96	36.750	4.838	19	38.579	2.854	90	19	PDE10A	intronic	NA
RCC_T7--5	chr6:165843840	T	C	128	0.188	103	36.146	7.833	24	38.458	4.293	94	23	PDE10A	intronic	NA
RCC_T7--6	chr6:165843840	T	C	81	0.099	72	37.583	3.540	8	37.750	3.370	69	8	PDE10A	intronic	NA
RCC_T7--7	chr6:165843840	T	NA	93	0	93	37.527	4.122	0	0	0	88	0	PDE10A	intronic	NA
RCC_T7--8	chr6:165843840	T	NA	99	0	99	37.677	3.616	0	0	0	96	0	PDE10A	intronic	NA
RCC_T7--9	chr6:165843840	T	NA	91	0	90	37.700	5.113	0	0	0	87	0	PDE10A	intronic	NA
RCC_T7--GL	chr6:165843840	T	NA	146	0	144	36.958	6.676	0	0	0	134	0	PDE10A	intronic	NA
RCC_T7--10	chr6:43473562	A	T	75	0.133	65	36.154	5.753	10	37.200	2.201	63	10	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--11	chr6:43473562	A	NA	96	0	95	35.432	5.879	0	0	0	87	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--1	chr6:43473562	A	NA	70	0	70	35.514	7.217	0	0	0	65	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--2	chr6:43473562	A	NA	70	0	70	36.000	6.375	0	0	0	62	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--3	chr6:43473562	A	NA	105	0	105	34.524	7.867	0	0	0	94	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--4	chr6:43473562	A	NA	84	0	83	34.277	7.645	0	0	0	74	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--5	chr6:43473562	A	NA	112	0	112	35.286	6.424	0	0	0	103	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--6	chr6:43473562	A	NA	60	0	60	35.917	5.797	0	0	0	57	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--7	chr6:43473562	A	NA	69	0	69	34.870	5.549	0	0	0	63	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--8	chr6:43473562	A	NA	66	0	65	35.031	5.723	0	0	0	60	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--9	chr6:43473562	A	NA	58	0	58	34.466	8.792	0	0	0	51	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr6:43473562	A	NA	84	0	83	33.012	10.300	0	0	0	70	0	TJAP1	exonic	nonsynonymous_SNV
RCC_T7--10	chr6:7246926	A	NA	59	0	58	34.655	6.146	0	0	0	53	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--11	chr6:7246926	A	NA	60	0	60	32.183	8.323	0	0	0	52	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--1	chr6:7246926	A	NA	58	0	57	30.860	10.638	0	0	0	48	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--2	chr6:7246926	A	NA	64	0	64	34.438	4.193	0	0	0	58	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--3	chr6:7246926	A	NA	41	0	41	33.927	8.190	0	0	0	37	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--4	chr6:7246926	A	G	56	0.250	42	33.714	7.412	14	33.357	9.443	36	13	RREB1	exonic	nonsynonymous_SNV
RCC_T7--5	chr6:7246926	A	NA	60	0	60	31.650	10.302	0	0	0	49	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--6	chr6:7246926	A	NA	55	0	55	31.582	10.730	0	0	0	46	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--7	chr6:7246926	A	NA	36	0	36	33.056	8.675	0	0	0	32	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--8	chr6:7246926	A	NA	50	0	49	32.367	10.049	0	0	0	42	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--9	chr6:7246926	A	NA	49	0	49	33.265	8.458	0	0	0	41	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--GL	chr6:7246926	A	NA	80	0	80	32.725	8.370	0	0	0	69	0	RREB1	exonic	nonsynonymous_SNV
RCC_T7--10	chr6:7567530	G	T	191	0.188	154	36.149	5.807	36	36.611	7.141	141	34	DSP	intronic	NA
RCC_T7--11	chr6:7567530	G	NA	187	0	187	36.604	4.645	0	0	0	175	0	DSP	intronic	NA
RCC_T7--1	chr6:7567530	G	NA	191	0	189	36.492	6.282	0	0	0	179	0	DSP	intronic	NA
RCC_T7--2	chr6:7567530	G	NA	190	0	190	36.505	5.705	0	0	0	179	0	DSP	intronic	NA
RCC_T7--3	chr6:7567530	G	NA	210	0	208	35.639	6.924	0	0	0	191	0	DSP	intronic	NA
RCC_T7--4	chr6:7567530	G	NA	205	0	203	34.744	7.511	0	0	0	183	0	DSP	intronic	NA
RCC_T7--5	chr6:7567530	G	NA	219	0	217	35.415	7.674	0	0	0	199	0	DSP	intronic	NA
RCC_T7--6	chr6:7567530	G	NA	166	0	166	35.645	7.100	0	0	0	154	0	DSP	intronic	NA
RCC_T7--7	chr6:7567530	G	NA	212	0	211	36.109	6.821	0	0	0	197	0	DSP	intronic	NA
RCC_T7--8	chr6:7567530	G	NA	171	0	171	35.865	6.276	0	0	0	157	0	DSP	intronic	NA
RCC_T7--9	chr6:7567530	G	NA	187	0	187	36.957	4.303	0	0	0	180	0	DSP	intronic	NA
RCC_T7--GL	chr6:7567530	G	NA	212	0	211	35.844	6.779	0	0	0	196	0	DSP	intronic	NA
RCC_T7--10	chr7:12269260	A	T	26	0.077	24	38.083	1.976	2	25.000	12.728	24	1	TMEM106B	intronic	NA
RCC_T7--11	chr7:12269260	A	T	30	0.067	28	37.250	7.064	2	35.500	2.121	26	2	TMEM106B	intronic	NA
RCC_T7--1	chr7:12269260	A	T	38	0.079	35	38.971	1.839	3	35.333	2.887	35	3	TMEM106B	intronic	NA
RCC_T7--2	chr7:12269260	A	T	20	0.100	18	39.556	1.504	2	32.500	6.364	18	1	TMEM106B	intronic	NA
RCC_T7--3	chr7:12269260	A	T	22	0.273	16	38.188	2.762	6	32.167	3.061	16	5	TMEM106B	intronic	NA
RCC_T7--4	chr7:12269260	A	T	24	0.125	21	38.286	3.036	3	35.000	2.000	21	3	TMEM106B	intronic	NA
RCC_T7--5	chr7:12269260	A	T	46	0.152	39	36.487	6.712	7	36.143	1.574	36	7	TMEM106B	intronic	NA
RCC_T7--6	chr7:12269260	A	T	18	0.222	14	37.857	3.302	4	36.250	1.500	13	4	TMEM106B	intronic	NA
RCC_T7--7	chr7:12269260	A	T	16	0.062	15	34.600	9.745	1	35.000	0.000	13	1	TMEM106B	intronic	NA
RCC_T7--8	chr7:12269260	A	T	27	0.111	24	38.042	2.440	3	36.000	1.732	24	3	TMEM106B	intronic	NA
RCC_T7--9	chr7:12269260	A	T	12	0.083	11	38.364	2.873	1	37.000	0.000	11	1	TMEM106B	intronic	NA
RCC_T7--GL	chr7:12269260	A	NA	53	0	53	38.925	2.037	0	0	0	53	0	TMEM106B	intronic	NA
RCC_T7--10	chr7:143826573	C	T	216	0.190	175	37.451	5.337	41	36.268	5.277	167	38	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--11	chr7:143826573	C	T	209	0.124	182	36.698	6.767	26	34.346	8.831	172	22	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--1	chr7:143826573	C	T	198	0.197	159	36.912	6.255	39	36.923	6.635	152	37	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--2	chr7:143826573	C	T	158	0.234	121	36.719	5.418	37	38.892	2.105	113	37	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--3	chr7:143826573	C	T	225	0.231	172	37.035	6.380	52	35.096	5.925	163	49	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--4	chr7:143826573	C	T	214	0.234	163	35.982	6.730	50	37.260	3.076	154	49	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--5	chr7:143826573	C	T	246	0.203	194	35.918	7.442	50	34.020	8.768	178	41	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--6	chr7:143826573	C	T	195	0.138	167	36.048	7.334	27	36.370	3.702	157	26	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--7	chr7:143826573	C	T	246	0.252	182	36.467	6.999	62	35.565	6.465	170	58	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--8	chr7:143826573	C	T	166	0.096	149	36.839	5.480	16	37.250	3.550	143	16	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--9	chr7:143826573	C	T	185	0.086	169	36.799	4.592	16	36.438	3.881	160	15	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--GL	chr7:143826573	C	NA	202	0	202	35.485	7.740	0	0	0	182	0	OR2A14	exonic	nonsynonymous_SNV
RCC_T7--10	chr7:32854679	G	NA	36	0	35	38.800	6.588	0	0	0	34	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--11	chr7:32854679	G	NA	50	0	50	38.940	2.535	0	0	0	50	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--1	chr7:32854679	G	NA	66	0	65	38.292	6.237	0	0	0	62	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--2	chr7:32854679	G	NA	43	0	43	38.070	8.216	0	0	0	41	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--3	chr7:32854679	G	NA	29	0	29	35.931	5.946	0	0	0	26	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--4	chr7:32854679	G	NA	26	0	26	38.269	2.736	0	0	0	26	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--5	chr7:32854679	G	NA	57	0	57	35.667	10.260	0	0	0	50	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--6	chr7:32854679	G	NA	17	0	17	39.529	1.700	0	0	0	17	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--7	chr7:32854679	G	T	29	0.138	25	38.240	3.908	4	37.750	3.202	24	4	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--8	chr7:32854679	G	NA	39	0	39	38.641	4.966	0	0	0	38	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--9	chr7:32854679	G	NA	51	0	50	39.160	2.189	0	0	0	50	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--GL	chr7:32854679	G	NA	66	0	66	37.879	4.532	0	0	0	61	0	LINC00997(dist=52143),KBTBD2(dist=53099)	intergenic	NA
RCC_T7--10	chr7:36406218	A	NA	81	0	81	37.173	5.331	0	0	0	77	0	KIAA0895	intronic	NA
RCC_T7--11	chr7:36406218	A	NA	92	0	92	36.793	5.342	0	0	0	87	0	KIAA0895	intronic	NA
RCC_T7--1	chr7:36406218	A	NA	91	0	90	37.522	4.166	0	0	0	88	0	KIAA0895	intronic	NA
RCC_T7--2	chr7:36406218	A	NA	99	0	97	38.000	4.800	0	0	0	95	0	KIAA0895	intronic	NA
RCC_T7--3	chr7:36406218	A	G	74	0.149	63	36.683	5.886	11	36.091	5.540	59	10	KIAA0895	intronic	NA
RCC_T7--4	chr7:36406218	A	NA	90	0	90	35.767	6.586	0	0	0	83	0	KIAA0895	intronic	NA
RCC_T7--5	chr7:36406218	A	NA	138	0	138	36.609	7.052	0	0	0	126	0	KIAA0895	intronic	NA
RCC_T7--6	chr7:36406218	A	NA	81	0	81	37.123	5.254	0	0	0	77	0	KIAA0895	intronic	NA
RCC_T7--7	chr7:36406218	A	NA	73	0	73	37.479	3.801	0	0	0	69	0	KIAA0895	intronic	NA
RCC_T7--8	chr7:36406218	A	NA	88	0	88	37.989	3.792	0	0	0	86	0	KIAA0895	intronic	NA
RCC_T7--9	chr7:36406218	A	NA	70	0	70	37.314	3.936	0	0	0	68	0	KIAA0895	intronic	NA
RCC_T7--GL	chr7:36406218	A	NA	136	0	135	37.044	5.718	0	0	0	128	0	KIAA0895	intronic	NA
RCC_T7--10	chr8:141780882	T	NA	40	0	40	38.400	2.373	0	0	0	40	0	PTK2	intronic	NA
RCC_T7--11	chr8:141780882	T	NA	29	0	29	36.586	8.118	0	0	0	26	0	PTK2	intronic	NA
RCC_T7--1	chr8:141780882	T	NA	49	0	49	38.388	2.668	0	0	0	48	0	PTK2	intronic	NA
RCC_T7--2	chr8:141780882	T	NA	29	0	29	38.207	3.726	0	0	0	28	0	PTK2	intronic	NA
RCC_T7--3	chr8:141780882	T	NA	33	0	32	36.312	4.789	0	0	0	29	0	PTK2	intronic	NA
RCC_T7--4	chr8:141780882	T	NA	30	0	30	38.733	2.477	0	0	0	30	0	PTK2	intronic	NA
RCC_T7--5	chr8:141780882	T	NA	40	0	40	36.575	6.578	0	0	0	38	0	PTK2	intronic	NA
RCC_T7--6	chr8:141780882	T	NA	27	0	27	37.407	6.002	0	0	0	25	0	PTK2	intronic	NA
RCC_T7--7	chr8:141780882	T	C	27	0.148	22	33.773	7.727	4	38.500	2.380	17	4	PTK2	intronic	NA
RCC_T7--8	chr8:141780882	T	NA	18	0	18	34.611	12.142	0	0	0	16	0	PTK2	intronic	NA
RCC_T7--9	chr8:141780882	T	NA	24	0	24	38.375	3.268	0	0	0	24	0	PTK2	intronic	NA
RCC_T7--GL	chr8:141780882	T	NA	47	0	47	38.638	3.467	0	0	0	46	0	PTK2	intronic	NA
RCC_T7--10	chr8:145771055	T	NA	247	0	245	35.637	5.885	0	0	0	230	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--11	chr8:145771055	T	NA	250	0	249	34.791	7.269	0	0	0	225	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--1	chr8:145771055	T	NA	269	0	263	34.966	7.764	0	0	0	240	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--2	chr8:145771055	T	NA	226	0	222	34.982	7.713	0	0	0	203	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--3	chr8:145771055	T	G	276	0.221	208	34.404	8.326	61	35.426	8.061	190	56	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--4	chr8:145771055	T	G	242	0.182	197	34.655	8.028	44	35.795	6.037	182	42	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--5	chr8:145771055	T	G	285	0.200	224	34.710	7.034	57	33.298	9.179	202	49	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--6	chr8:145771055	T	G	271	0.181	221	34.543	7.557	49	31.592	10.259	199	38	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--7	chr8:145771055	T	NA	219	0	217	35.346	7.098	0	0	0	198	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--8	chr8:145771055	T	NA	223	0	219	34.603	7.505	0	0	0	198	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--9	chr8:145771055	T	NA	209	0	208	34.351	8.581	0	0	0	186	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--GL	chr8:145771055	T	NA	261	0	261	34.923	7.330	0	0	0	239	0	ARHGAP39	exonic	nonsynonymous_SNV
RCC_T7--10	chr8:23306385	T	NA	71	0	71	36.465	7.002	0	0	0	66	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--11	chr8:23306385	T	NA	56	0	56	35.571	8.288	0	0	0	52	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--1	chr8:23306385	T	NA	80	0	79	36.722	5.666	0	0	0	76	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--2	chr8:23306385	T	A	60	0.183	49	37.102	7.888	11	35.182	8.507	46	10	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--3	chr8:23306385	T	NA	67	0	67	34.448	9.316	0	0	0	58	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--4	chr8:23306385	T	NA	73	0	72	37.278	6.147	0	0	0	69	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--5	chr8:23306385	T	NA	69	0	68	35.853	9.090	0	0	0	63	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--6	chr8:23306385	T	NA	55	0	55	35.509	8.522	0	0	0	49	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--7	chr8:23306385	T	NA	49	0	49	37.306	4.984	0	0	0	47	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--8	chr8:23306385	T	NA	47	0	47	37.191	5.136	0	0	0	44	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--9	chr8:23306385	T	NA	59	0	59	35.712	7.768	0	0	0	54	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--GL	chr8:23306385	T	NA	69	0	69	34.203	10.480	0	0	0	60	0	ENTPD4	exonic	nonsynonymous_SNV
RCC_T7--10	chr8:63775961	G	NA	41	0	41	38.780	2.824	0	0	0	41	0	NKAIN3	intronic	NA
RCC_T7--11	chr8:63775961	G	A	39	0.154	33	36.273	8.618	6	40.000	1.095	31	6	NKAIN3	intronic	NA
RCC_T7--1	chr8:63775961	G	A	49	0.102	44	38.386	2.413	5	38.200	2.775	44	5	NKAIN3	intronic	NA
RCC_T7--2	chr8:63775961	G	NA	35	0	35	37.457	6.788	0	0	0	33	0	NKAIN3	intronic	NA
RCC_T7--3	chr8:63775961	G	NA	43	0	43	37.302	6.614	0	0	0	40	0	NKAIN3	intronic	NA
RCC_T7--4	chr8:63775961	G	NA	35	0	35	36.371	7.349	0	0	0	33	0	NKAIN3	intronic	NA
RCC_T7--5	chr8:63775961	G	NA	60	0	59	38.305	3.041	0	0	0	58	0	NKAIN3	intronic	NA
RCC_T7--6	chr8:63775961	G	NA	65	0	65	36.754	5.774	0	0	0	62	0	NKAIN3	intronic	NA
RCC_T7--7	chr8:63775961	G	NA	49	0	49	37.796	5.891	0	0	0	48	0	NKAIN3	intronic	NA
RCC_T7--8	chr8:63775961	G	NA	53	0	53	34.679	10.233	0	0	0	47	0	NKAIN3	intronic	NA
RCC_T7--9	chr8:63775961	G	NA	27	0	27	36.593	8.135	0	0	0	25	0	NKAIN3	intronic	NA
RCC_T7--GL	chr8:63775961	G	NA	36	0	36	37.750	6.682	0	0	0	35	0	NKAIN3	intronic	NA
RCC_T7--10	chr9:114986020	T	NA	31	0	26	31.538	12.021	0	0	0	18	0	PTBP3	ncRNA_UTR3	NA
RCC_T7--11	chr9:114986020	T	A	37	0.027	36	34.361	9.937	1	33.000	0.000	30	1	PTBP3	ncRNA_UTR3	NA
RCC_T7--1	chr9:114986020	T	A	49	0.102	39	35.359	7.979	5	33.200	1.643	31	5	PTBP3	ncRNA_UTR3	NA
RCC_T7--2	chr9:114986020	T	A	37	0.054	35	34.486	10.071	2	32.000	1.414	30	2	PTBP3	ncRNA_UTR3	NA
RCC_T7--3	chr9:114986020	T	A	25	0.080	22	37.136	5.454	2	32.500	2.121	20	2	PTBP3	ncRNA_UTR3	NA
RCC_T7--4	chr9:114986020	T	A	26	0.154	22	39.136	3.060	4	31.000	0.816	22	4	PTBP3	ncRNA_UTR3	NA
RCC_T7--5	chr9:114986020	T	A	37	0.189	28	32.643	12.976	7	32.571	1.512	21	7	PTBP3	ncRNA_UTR3	NA
RCC_T7--6	chr9:114986020	T	A	26	0.154	22	33.409	12.462	4	30.500	2.887	18	3	PTBP3	ncRNA_UTR3	NA
RCC_T7--7	chr9:114986020	T	A	19	0.053	18	35.111	9.184	1	31.000	0.000	15	1	PTBP3	ncRNA_UTR3	NA
RCC_T7--8	chr9:114986020	T	A	29	0.069	26	33.654	10.256	2	31.000	0.000	22	2	PTBP3	ncRNA_UTR3	NA
RCC_T7--9	chr9:114986020	T	A	33	0.061	28	36.429	7.942	2	32.500	2.121	24	2	PTBP3	ncRNA_UTR3	NA
RCC_T7--GL	chr9:114986020	T	NA	58	0	57	33.702	9.590	0	0	0	45	0	PTBP3	ncRNA_UTR3	NA
RCC_T7--10	chr9:114986021	C	A	32	0.031	27	31.333	12.536	1	34.000	0.000	21	1	PTBP3	ncRNA_UTR3	NA
RCC_T7--11	chr9:114986021	C	A	39	0.103	35	36.714	6.129	4	26.500	16.422	32	3	PTBP3	ncRNA_UTR3	NA
RCC_T7--1	chr9:114986021	C	A	52	0.154	42	33.667	10.956	8	32.500	3.625	34	7	PTBP3	ncRNA_UTR3	NA
RCC_T7--2	chr9:114986021	C	A	38	0.079	35	35.343	10.117	3	33.000	3.464	31	3	PTBP3	ncRNA_UTR3	NA
RCC_T7--3	chr9:114986021	C	A	27	0.148	22	37.636	4.315	4	33.000	1.414	20	4	PTBP3	ncRNA_UTR3	NA
RCC_T7--4	chr9:114986021	C	A	28	0.214	22	38.682	3.695	6	32.500	2.168	22	6	PTBP3	ncRNA_UTR3	NA
RCC_T7--5	chr9:114986021	C	A	37	0.189	30	31.400	14.267	7	34.286	2.752	23	7	PTBP3	ncRNA_UTR3	NA
RCC_T7--6	chr9:114986021	C	A	27	0.185	22	35.000	11.514	5	33.600	1.517	18	5	PTBP3	ncRNA_UTR3	NA
RCC_T7--7	chr9:114986021	C	A	19	0.053	18	35.722	9.074	1	37.000	0.000	16	1	PTBP3	ncRNA_UTR3	NA
RCC_T7--8	chr9:114986021	C	A	30	0.100	27	31.852	12.434	3	32.000	1.732	23	3	PTBP3	ncRNA_UTR3	NA
RCC_T7--9	chr9:114986021	C	A	36	0.139	29	35.931	9.658	5	32.400	1.949	25	5	PTBP3	ncRNA_UTR3	NA
RCC_T7--GL	chr9:114986021	C	NA	58	0	55	34.800	7.828	0	0	0	46	0	PTBP3	ncRNA_UTR3	NA
RCC_T7--10	chr9:140136159	C	T	40	0.200	32	31.656	12.103	8	30.125	7.900	25	5	TUBB4B	intronic	NA
RCC_T7--11	chr9:140136159	C	NA	49	0	48	31.521	12.058	0	0	0	40	0	TUBB4B	intronic	NA
RCC_T7--1	chr9:140136159	C	NA	55	0	55	31.582	11.218	0	0	0	45	0	TUBB4B	intronic	NA
RCC_T7--2	chr9:140136159	C	NA	57	0	57	32.158	10.854	0	0	0	49	0	TUBB4B	intronic	NA
RCC_T7--3	chr9:140136159	C	NA	39	0	39	32.103	10.141	0	0	0	32	0	TUBB4B	intronic	NA
RCC_T7--4	chr9:140136159	C	NA	42	0	42	27.500	15.050	0	0	0	27	0	TUBB4B	intronic	NA
RCC_T7--5	chr9:140136159	C	NA	57	0	57	31.421	11.060	0	0	0	49	0	TUBB4B	intronic	NA
RCC_T7--6	chr9:140136159	C	NA	55	0	55	29.436	12.745	0	0	0	44	0	TUBB4B	intronic	NA
RCC_T7--7	chr9:140136159	C	NA	37	0	37	32.486	8.392	0	0	0	33	0	TUBB4B	intronic	NA
RCC_T7--8	chr9:140136159	C	NA	62	0	62	32.194	10.787	0	0	0	49	0	TUBB4B	intronic	NA
RCC_T7--9	chr9:140136159	C	NA	48	0	48	31.375	11.256	0	0	0	38	0	TUBB4B	intronic	NA
RCC_T7--GL	chr9:140136159	C	NA	70	0	70	32.500	10.219	0	0	0	58	0	TUBB4B	intronic	NA
RCC_T7--10	chr9:15055988	C	NA	61	0	60	37.700	3.451	0	0	0	58	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--11	chr9:15055988	C	NA	43	0	43	36.302	6.909	0	0	0	40	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--1	chr9:15055988	C	NA	58	0	58	37.828	3.500	0	0	0	57	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--2	chr9:15055988	C	T	24	0.167	20	36.500	5.754	4	39.500	1.291	19	4	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--3	chr9:15055988	C	NA	37	0	37	36.486	7.614	0	0	0	34	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--4	chr9:15055988	C	NA	46	0	45	38.067	2.965	0	0	0	45	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--5	chr9:15055988	C	NA	53	0	52	36.385	6.725	0	0	0	47	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--6	chr9:15055988	C	NA	47	0	47	35.787	8.275	0	0	0	43	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--7	chr9:15055988	C	NA	54	0	54	37.981	3.774	0	0	0	53	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--8	chr9:15055988	C	NA	50	0	50	37.380	6.013	0	0	0	47	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--9	chr9:15055988	C	NA	52	0	52	37.038	4.576	0	0	0	50	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--GL	chr9:15055988	C	NA	49	0	48	37.729	3.571	0	0	0	46	0	LOC389705(dist=36266),TTC39B(dist=114854)	intergenic	NA
RCC_T7--10	chr9:66514143	G	A	62	0.065	57	35.561	8.231	4	34.000	4.690	53	3	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--11	chr9:66514143	G	A	58	0.086	53	34.736	10.031	5	36.200	4.970	48	4	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--1	chr9:66514143	G	A	62	0.081	57	36.632	6.496	5	37.600	2.074	52	5	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--2	chr9:66514143	G	A	58	0.069	54	36.000	8.906	4	35.500	1.732	49	4	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--3	chr9:66514143	G	A	59	0.186	48	35.542	8.810	11	27.636	11.767	43	8	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--4	chr9:66514143	G	A	43	0.023	41	36.780	7.136	1	38.000	0.000	39	1	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--5	chr9:66514143	G	A	66	0.061	62	33.194	10.761	4	37.750	1.258	51	4	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--6	chr9:66514143	G	A	62	0.129	53	36.453	7.541	8	35.375	7.150	50	7	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--7	chr9:66514143	G	A	44	0.159	37	37.270	6.971	7	34.000	6.831	34	6	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--8	chr9:66514143	G	A	46	0.087	42	36.714	6.855	4	27.000	16.713	40	3	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--9	chr9:66514143	G	A	48	0.125	42	35.714	6.791	6	36.833	2.927	37	6	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--GL	chr9:66514143	G	NA	44	0	43	34.674	8.377	0	0	0	37	0	PTGER4P2-CDK2AP2P2(dist=11113),RP11-381O7.3(dist=503232)	intergenic	NA
RCC_T7--10	chr9:96021519	C	NA	161	0	160	34.600	7.462	0	0	0	148	0	WNK2	exonic	synonymous_SNV
RCC_T7--11	chr9:96021519	C	NA	183	0	183	34.071	8.037	0	0	0	168	0	WNK2	exonic	synonymous_SNV
RCC_T7--1	chr9:96021519	C	NA	187	0	185	34.762	6.881	0	0	0	173	0	WNK2	exonic	synonymous_SNV
RCC_T7--2	chr9:96021519	C	NA	141	0	140	35.893	4.087	0	0	0	133	0	WNK2	exonic	synonymous_SNV
RCC_T7--3	chr9:96021519	C	T	194	0.196	155	34.284	6.958	38	34.684	4.708	143	36	WNK2	exonic	synonymous_SNV
RCC_T7--4	chr9:96021519	C	T	186	0.156	157	33.860	8.221	29	31.724	10.630	140	23	WNK2	exonic	synonymous_SNV
RCC_T7--5	chr9:96021519	C	T	171	0.199	136	33.610	9.159	34	35.265	6.721	124	32	WNK2	exonic	synonymous_SNV
RCC_T7--6	chr9:96021519	C	T	153	0.170	124	33.387	9.079	26	32.308	9.899	108	21	WNK2	exonic	synonymous_SNV
RCC_T7--7	chr9:96021519	C	NA	163	0	162	34.710	7.026	0	0	0	147	0	WNK2	exonic	synonymous_SNV
RCC_T7--8	chr9:96021519	C	NA	153	0	153	33.980	8.711	0	0	0	135	0	WNK2	exonic	synonymous_SNV
RCC_T7--9	chr9:96021519	C	NA	141	0	140	34.993	7.065	0	0	0	129	0	WNK2	exonic	synonymous_SNV
RCC_T7--GL	chr9:96021519	C	NA	207	0	207	35.121	6.444	0	0	0	194	0	WNK2	exonic	synonymous_SNV
RCC_T7--10	chr9:97879776	C	NA	19	0	19	38.579	2.269	0	0	0	19	0	FANCC	intronic	NA
RCC_T7--11	chr9:97879776	C	NA	35	0	34	36.441	6.841	0	0	0	32	0	FANCC	intronic	NA
RCC_T7--1	chr9:97879776	C	NA	43	0	42	37.810	3.022	0	0	0	42	0	FANCC	intronic	NA
RCC_T7--2	chr9:97879776	C	NA	19	0	19	35.368	6.685	0	0	0	17	0	FANCC	intronic	NA
RCC_T7--3	chr9:97879776	C	T	26	0.154	22	38.136	2.376	4	37.250	2.062	22	4	FANCC	intronic	NA
RCC_T7--4	chr9:97879776	C	NA	30	0	30	37.667	3.745	0	0	0	29	0	FANCC	intronic	NA
RCC_T7--5	chr9:97879776	C	NA	47	0	46	35.674	7.522	0	0	0	42	0	FANCC	intronic	NA
RCC_T7--6	chr9:97879776	C	NA	13	0	13	36.692	4.191	0	0	0	12	0	FANCC	intronic	NA
RCC_T7--7	chr9:97879776	C	NA	14	0	14	38.929	2.814	0	0	0	14	0	FANCC	intronic	NA
RCC_T7--8	chr9:97879776	C	NA	23	0	23	37.217	5.178	0	0	0	22	0	FANCC	intronic	NA
RCC_T7--9	chr9:97879776	C	NA	34	0	34	38.706	2.970	0	0	0	34	0	FANCC	intronic	NA
RCC_T7--GL	chr9:97879776	C	NA	38	0	38	36.684	8.037	0	0	0	35	0	FANCC	intronic	NA
RCC_T8--1	chr10:104590461	A	NA	101	0	99	33.606	8.028	0	0	0	84	0	CYP17A1	exonic	stoploss_SNV
RCC_T8--2	chr10:104590461	A	NA	94	0	93	34.215	7.568	0	0	0	83	0	CYP17A1	exonic	stoploss_SNV
RCC_T8--3	chr10:104590461	A	T	91	0.209	72	33.347	8.981	19	33.474	9.204	60	17	CYP17A1	exonic	stoploss_SNV
RCC_T8--4	chr10:104590461	A	T	88	0.102	79	34.152	7.992	9	29.778	15.896	70	7	CYP17A1	exonic	stoploss_SNV
RCC_T8--5	chr10:104590461	A	T	82	0.305	57	31.579	10.642	25	34.280	3.846	46	21	CYP17A1	exonic	stoploss_SNV
RCC_T8--GL	chr10:104590461	A	NA	82	0	82	33.427	9.435	0	0	0	72	0	CYP17A1	exonic	stoploss_SNV
RCC_T8--1	chr10:73577074	G	NA	81	0	80	31.087	12.814	0	0	0	59	0	PSAP	UTR3	NA
RCC_T8--2	chr10:73577074	G	NA	101	0	101	31.178	12.326	0	0	0	72	0	PSAP	UTR3	NA
RCC_T8--3	chr10:73577074	G	NA	71	0	69	29.768	13.180	0	0	0	51	0	PSAP	UTR3	NA
RCC_T8--4	chr10:73577074	G	NA	54	0	54	33.611	9.632	0	0	0	47	0	PSAP	UTR3	NA
RCC_T8--5	chr10:73577074	G	T	95	0.221	74	30.581	13.582	21	33.714	10.465	54	17	PSAP	UTR3	NA
RCC_T8--GL	chr10:73577074	G	NA	63	0	63	28.556	14.087	0	0	0	43	0	PSAP	UTR3	NA
RCC_T8--1	chr11:134253871	C	NA	47	0	46	30.022	11.111	0	0	0	35	0	B3GAT1	exonic	synonymous_SNV
RCC_T8--2	chr11:134253871	C	NA	52	0	52	29.923	11.509	0	0	0	34	0	B3GAT1	exonic	synonymous_SNV
RCC_T8--3	chr11:134253871	C	NA	50	0	50	31.620	10.274	0	0	0	36	0	B3GAT1	exonic	synonymous_SNV
RCC_T8--4	chr11:134253871	C	NA	37	0	37	33.486	6.371	0	0	0	34	0	B3GAT1	exonic	synonymous_SNV
RCC_T8--5	chr11:134253871	C	T	31	0.355	20	31.350	9.427	11	27.727	12.539	13	7	B3GAT1	exonic	synonymous_SNV
RCC_T8--GL	chr11:134253871	C	NA	45	0	45	30.000	12.305	0	0	0	35	0	B3GAT1	exonic	synonymous_SNV
RCC_T8--1	chr1:149903893	T	G	202	0.178	166	34.536	8.742	36	35.194	7.293	146	32	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--2	chr1:149903893	T	NA	276	0	276	36.116	5.419	0	0	0	255	0	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--3	chr1:149903893	T	NA	253	0	253	34.652	8.995	0	0	0	222	0	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--4	chr1:149903893	T	NA	204	0	203	34.522	9.111	0	0	0	178	0	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--5	chr1:149903893	T	NA	237	0	236	34.691	8.893	0	0	0	201	0	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--GL	chr1:149903893	T	NA	228	0	226	34.500	8.798	0	0	0	195	0	MTMR11	exonic	nonsynonymous_SNV
RCC_T8--1	chr11:6292024	G	NA	89	0	89	34.404	8.017	0	0	0	79	0	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--2	chr11:6292024	G	NA	119	0	119	34.420	8.584	0	0	0	103	0	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--3	chr11:6292024	G	A	101	0.277	72	33.514	10.514	28	34.429	7.386	59	25	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--4	chr11:6292024	G	NA	85	0	84	33.869	8.821	0	0	0	73	0	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--5	chr11:6292024	G	NA	153	0	152	33.092	10.164	0	0	0	124	0	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--GL	chr11:6292024	G	NA	99	0	99	33.242	9.984	0	0	0	82	0	CCKBR	exonic	nonsynonymous_SNV
RCC_T8--1	chr11:82905547	C	NA	19	0	19	31.895	11.115	0	0	0	15	0	ANKRD42	UTR5	NA
RCC_T8--2	chr11:82905547	C	NA	48	0	47	33.596	7.925	0	0	0	42	0	ANKRD42	UTR5	NA
RCC_T8--3	chr11:82905547	C	NA	20	0	20	35.800	8.439	0	0	0	19	0	ANKRD42	UTR5	NA
RCC_T8--4	chr11:82905547	C	NA	29	0	29	33.448	9.945	0	0	0	25	0	ANKRD42	UTR5	NA
RCC_T8--5	chr11:82905547	C	A	37	0.162	31	35.806	5.076	6	30.500	6.834	29	4	ANKRD42	UTR5	NA
RCC_T8--GL	chr11:82905547	C	NA	39	0	39	36.590	4.535	0	0	0	36	0	ANKRD42	UTR5	NA
RCC_T8--1	chr11:85979432	T	C	54	0.241	41	35.780	8.413	13	38.000	2.582	36	13	EED	intronic	NA
RCC_T8--2	chr11:85979432	T	C	78	0.026	76	37.987	3.639	2	36.500	6.364	75	2	EED	intronic	NA
RCC_T8--3	chr11:85979432	T	C	36	0.167	30	39.000	2.259	6	40.000	1.673	30	6	EED	intronic	NA
RCC_T8--4	chr11:85979432	T	C	43	0.047	41	37.317	4.034	2	39.000	2.828	40	2	EED	intronic	NA
RCC_T8--5	chr11:85979432	T	C	72	0.083	66	38.167	2.985	6	36.000	4.648	65	6	EED	intronic	NA
RCC_T8--GL	chr11:85979432	T	NA	42	0	42	37.619	3.004	0	0	0	41	0	EED	intronic	NA
RCC_T8--1	chr12:133358952	C	NA	75	0	75	35.587	7.917	0	0	0	68	0	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--2	chr12:133358952	C	NA	130	0	130	34.200	9.180	0	0	0	114	0	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--3	chr12:133358952	C	T	169	0.172	139	35.129	8.401	29	37.621	3.234	121	29	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--4	chr12:133358952	C	NA	100	0	100	34.460	9.309	0	0	0	89	0	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--5	chr12:133358952	C	NA	156	0	156	34.538	8.955	0	0	0	139	0	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--GL	chr12:133358952	C	NA	99	0	99	34.485	9.985	0	0	0	85	0	GOLGA3	exonic	nonsynonymous_SNV
RCC_T8--1	chr1:214816224	G	A	96	0.156	80	36.000	7.342	15	32.600	8.781	73	11	CENPF	exonic	nonsynonymous_SNV
RCC_T8--2	chr1:214816224	G	A	142	0.021	139	35.712	7.012	3	36.333	5.686	123	3	CENPF	exonic	nonsynonymous_SNV
RCC_T8--3	chr1:214816224	G	NA	92	0	92	35.424	8.370	0	0	0	82	0	CENPF	exonic	nonsynonymous_SNV
RCC_T8--4	chr1:214816224	G	A	93	0.118	81	35.370	8.578	11	30.909	10.802	73	7	CENPF	exonic	nonsynonymous_SNV
RCC_T8--5	chr1:214816224	G	A	124	0.129	108	35.787	7.541	16	36.438	3.346	96	15	CENPF	exonic	nonsynonymous_SNV
RCC_T8--GL	chr1:214816224	G	NA	125	0	125	35.704	7.331	0	0	0	112	0	CENPF	exonic	nonsynonymous_SNV
RCC_T8--1	chr12:27746355	A	T	73	0.151	62	37.290	3.205	11	38.545	3.174	61	11	PPFIBP1	intronic	NA
RCC_T8--2	chr12:27746355	A	T	132	0.030	127	36.315	5.851	4	32.500	5.066	119	3	PPFIBP1	intronic	NA
RCC_T8--3	chr12:27746355	A	T	155	0.148	132	36.636	5.004	23	35.826	7.872	124	22	PPFIBP1	intronic	NA
RCC_T8--4	chr12:27746355	A	T	98	0.082	90	35.022	8.727	8	38.250	3.655	82	8	PPFIBP1	intronic	NA
RCC_T8--5	chr12:27746355	A	T	135	0.096	122	35.918	6.726	13	35.000	4.708	110	11	PPFIBP1	intronic	NA
RCC_T8--GL	chr12:27746355	A	NA	128	0	126	36.960	5.321	0	0	0	120	0	PPFIBP1	intronic	NA
RCC_T8--1	chr12:40626193	T	NA	130	0	130	36.338	6.892	0	0	0	120	0	LRRK2	intronic	NA
RCC_T8--2	chr12:40626193	T	C	130	0.008	128	37.570	4.638	1	38.000	0.000	124	1	LRRK2	intronic	NA
RCC_T8--3	chr12:40626193	T	C	192	0.385	118	37.839	4.690	74	36.311	5.237	114	70	LRRK2	intronic	NA
RCC_T8--4	chr12:40626193	T	C	143	0.077	132	37.515	4.532	11	37.182	2.562	129	11	LRRK2	intronic	NA
RCC_T8--5	chr12:40626193	T	C	94	0.223	73	35.411	7.590	21	38.524	2.015	66	21	LRRK2	intronic	NA
RCC_T8--GL	chr12:40626193	T	NA	115	0	115	36.113	6.084	0	0	0	108	0	LRRK2	intronic	NA
RCC_T8--1	chr1:26737287	C	A	107	0.150	91	33.033	8.119	16	34.812	9.304	74	14	LIN28A	UTR5	NA
RCC_T8--2	chr1:26737287	C	NA	171	0	170	31.376	9.595	0	0	0	140	0	LIN28A	UTR5	NA
RCC_T8--3	chr1:26737287	C	NA	122	0	121	32.678	7.588	0	0	0	101	0	LIN28A	UTR5	NA
RCC_T8--4	chr1:26737287	C	NA	117	0	115	30.330	9.507	0	0	0	84	0	LIN28A	UTR5	NA
RCC_T8--5	chr1:26737287	C	NA	199	0	198	31.303	9.608	0	0	0	154	0	LIN28A	UTR5	NA
RCC_T8--GL	chr1:26737287	C	NA	116	0	116	30.517	10.024	0	0	0	84	0	LIN28A	UTR5	NA
RCC_T8--1	chr1:42048662	A	C	137	0.168	113	33.133	9.267	23	35.696	2.803	97	23	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--2	chr1:42048662	A	NA	222	0	222	32.973	9.191	0	0	0	188	0	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--3	chr1:42048662	A	NA	209	0	209	34.010	8.251	0	0	0	183	0	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--4	chr1:42048662	A	NA	173	0	172	33.616	8.817	0	0	0	145	0	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--5	chr1:42048662	A	NA	306	0	304	33.263	9.131	0	0	0	255	0	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--GL	chr1:42048662	A	NA	171	0	170	32.553	9.689	0	0	0	139	0	HIVEP3	exonic	nonsynonymous_SNV
RCC_T8--1	chr14:38679814	C	T	36	0.194	29	29.931	10.787	7	31.429	7.743	20	6	SSTR1	UTR3	NA
RCC_T8--2	chr14:38679814	C	T	44	0.136	38	28.737	10.857	6	24.167	16.192	25	4	SSTR1	UTR3	NA
RCC_T8--3	chr14:38679814	C	T	26	0.192	21	30.667	12.459	5	28.400	5.320	16	3	SSTR1	UTR3	NA
RCC_T8--4	chr14:38679814	C	NA	14	0	14	32.929	9.667	0	0	0	12	0	SSTR1	UTR3	NA
RCC_T8--5	chr14:38679814	C	T	51	0.098	46	29.957	11.145	5	35.200	3.271	30	5	SSTR1	UTR3	NA
RCC_T8--GL	chr14:38679814	C	NA	47	0	46	28.543	12.097	0	0	0	30	0	SSTR1	UTR3	NA
RCC_T8--1	chr14:78036900	G	A	70	0.043	36	38.556	5.459	3	35.000	1.000	35	3	SPTLC2	intronic	NA
RCC_T8--2	chr14:78036900	G	A	66	0.061	33	38.667	3.479	4	34.750	2.630	32	4	SPTLC2	intronic	NA
RCC_T8--3	chr14:78036900	G	A	59	0.017	27	38.481	2.806	1	37.000	0.000	27	1	SPTLC2	intronic	NA
RCC_T8--4	chr14:78036900	G	A	69	0.058	37	37.459	5.506	4	35.500	1.291	36	4	SPTLC2	intronic	NA
RCC_T8--5	chr14:78036900	G	A	78	0.090	26	38.654	2.637	7	31.857	3.485	26	6	SPTLC2	intronic	NA
RCC_T8--GL	chr14:78036900	G	NA	70	0	38	38.237	3.357	0	0	0	37	0	SPTLC2	intronic	NA
RCC_T8--1	chr1:53980497	C	NA	42	0	41	31.927	11.665	0	0	0	35	0	GLIS1	intronic	NA
RCC_T8--2	chr1:53980497	C	NA	68	0	68	35.676	6.856	0	0	0	63	0	GLIS1	intronic	NA
RCC_T8--3	chr1:53980497	C	G	75	0.187	61	36.082	4.409	14	34.571	3.975	55	13	GLIS1	intronic	NA
RCC_T8--4	chr1:53980497	C	NA	54	0	54	36.111	6.804	0	0	0	49	0	GLIS1	intronic	NA
RCC_T8--5	chr1:53980497	C	NA	107	0	107	34.897	7.639	0	0	0	96	0	GLIS1	intronic	NA
RCC_T8--GL	chr1:53980497	C	NA	45	0	45	35.467	8.123	0	0	0	42	0	GLIS1	intronic	NA
RCC_T8--1	chr15:73590962	G	C	17	0.118	15	37.333	3.848	2	40.500	0.707	15	2	NEO1	intronic	NA
RCC_T8--2	chr15:73590962	G	C	37	0.054	35	34.829	8.773	2	40.500	0.707	32	2	NEO1	intronic	NA
RCC_T8--3	chr15:73590962	G	C	36	0.194	29	35.414	3.969	7	33.429	14.093	28	6	NEO1	intronic	NA
RCC_T8--4	chr15:73590962	G	C	17	0.235	13	38.385	2.534	4	37.000	3.162	13	4	NEO1	intronic	NA
RCC_T8--5	chr15:73590962	G	C	52	0.154	44	36.523	5.101	8	36.000	5.372	40	6	NEO1	intronic	NA
RCC_T8--GL	chr15:73590962	G	NA	36	0	36	35.361	7.601	0	0	0	32	0	NEO1	intronic	NA
RCC_T8--1	chr15:94945132	T	C	42	0.167	35	38.200	3.787	7	38.714	2.430	34	7	MCTP2	exonic	synonymous_SNV
RCC_T8--2	chr15:94945132	T	NA	54	0	54	38.667	2.907	0	0	0	54	0	MCTP2	exonic	synonymous_SNV
RCC_T8--3	chr15:94945132	T	C	50	0.100	45	38.444	3.042	5	39.200	1.483	44	5	MCTP2	exonic	synonymous_SNV
RCC_T8--4	chr15:94945132	T	C	49	0.041	47	37.319	6.734	2	34.500	6.364	45	2	MCTP2	exonic	synonymous_SNV
RCC_T8--5	chr15:94945132	T	C	49	0.204	39	36.462	7.280	10	38.400	3.836	35	9	MCTP2	exonic	synonymous_SNV
RCC_T8--GL	chr15:94945132	T	NA	37	0	37	38.459	2.588	0	0	0	37	0	MCTP2	exonic	synonymous_SNV
RCC_T8--1	chr16:31429773	T	G	195	0.190	157	35.631	6.563	37	33.757	8.760	145	31	ITGAD	intronic	NA
RCC_T8--2	chr16:31429773	T	NA	249	0	247	33.567	8.940	0	0	0	212	0	ITGAD	intronic	NA
RCC_T8--3	chr16:31429773	T	NA	254	0	254	34.071	8.363	0	0	0	217	0	ITGAD	intronic	NA
RCC_T8--4	chr16:31429773	T	NA	202	0	200	34.785	7.932	0	0	0	168	0	ITGAD	intronic	NA
RCC_T8--5	chr16:31429773	T	NA	252	0	249	34.245	7.970	0	0	0	219	0	ITGAD	intronic	NA
RCC_T8--GL	chr16:31429773	T	NA	247	0	246	33.614	8.778	0	0	0	213	0	ITGAD	intronic	NA
RCC_T8--1	chr16:31429774	C	T	188	0.176	155	36.090	6.961	33	35.182	7.269	144	30	ITGAD	intronic	NA
RCC_T8--2	chr16:31429774	C	NA	244	0	243	33.918	9.111	0	0	0	208	0	ITGAD	intronic	NA
RCC_T8--3	chr16:31429774	C	NA	252	0	252	34.774	7.899	0	0	0	223	0	ITGAD	intronic	NA
RCC_T8--4	chr16:31429774	C	NA	197	0	197	35.340	7.799	0	0	0	173	0	ITGAD	intronic	NA
RCC_T8--5	chr16:31429774	C	NA	254	0	253	34.577	8.191	0	0	0	222	0	ITGAD	intronic	NA
RCC_T8--GL	chr16:31429774	C	NA	244	0	244	34.201	9.124	0	0	0	215	0	ITGAD	intronic	NA
RCC_T8--1	chr16:49764647	C	NA	86	0	85	36.906	6.471	0	0	0	79	0	ZNF423	intronic	NA
RCC_T8--2	chr16:49764647	C	NA	126	0	125	36.608	7.267	0	0	0	114	0	ZNF423	intronic	NA
RCC_T8--3	chr16:49764647	C	T	134	0.291	95	37.084	5.301	39	36.974	4.591	89	37	ZNF423	intronic	NA
RCC_T8--4	chr16:49764647	C	NA	86	0	86	38.000	5.573	0	0	0	84	0	ZNF423	intronic	NA
RCC_T8--5	chr16:49764647	C	NA	147	0	147	36.075	7.408	0	0	0	133	0	ZNF423	intronic	NA
RCC_T8--GL	chr16:49764647	C	NA	105	0	104	36.885	6.021	0	0	0	96	0	ZNF423	intronic	NA
RCC_T8--1	chr17:30693589	T	C	46	0.174	38	38.974	3.284	8	40.250	1.488	37	8	ZNF207	intronic	NA
RCC_T8--2	chr17:30693589	T	C	77	0.052	73	38.151	7.121	4	39.500	1.915	70	4	ZNF207	intronic	NA
RCC_T8--3	chr17:30693589	T	C	72	0.292	51	39.196	2.569	21	39.000	3.000	51	21	ZNF207	intronic	NA
RCC_T8--4	chr17:30693589	T	C	54	0.093	49	39.245	2.314	5	38.200	1.789	49	5	ZNF207	intronic	NA
RCC_T8--5	chr17:30693589	T	C	68	0.147	58	38.034	4.242	10	39.900	1.370	56	10	ZNF207	intronic	NA
RCC_T8--GL	chr17:30693589	T	NA	52	0	52	37.423	6.798	0	0	0	49	0	ZNF207	intronic	NA
RCC_T8--1	chr17:38512785	G	T	221	0.131	189	32.503	9.975	29	27.793	10.890	150	18	RARA	UTR3	NA
RCC_T8--2	chr17:38512785	G	T	415	0.041	396	33.465	9.478	17	27.353	10.671	331	9	RARA	UTR3	NA
RCC_T8--3	chr17:38512785	G	T	322	0.230	248	33.004	9.758	74	29.581	11.588	205	49	RARA	UTR3	NA
RCC_T8--4	chr17:38512785	G	T	319	0.116	281	33.103	8.937	37	28.838	12.844	235	25	RARA	UTR3	NA
RCC_T8--5	chr17:38512785	G	T	479	0.098	431	31.824	10.476	47	29.043	12.362	348	31	RARA	UTR3	NA
RCC_T8--GL	chr17:38512785	G	NA	318	0	312	32.462	9.838	0	0	0	247	0	RARA	UTR3	NA
RCC_T8--1	chr17:74527502	C	NA	51	0	51	32.000	10.933	0	0	0	41	0	CYGB	intronic	NA
RCC_T8--2	chr17:74527502	C	NA	84	0	83	31.024	11.412	0	0	0	64	0	CYGB	intronic	NA
RCC_T8--3	chr17:74527502	C	NA	103	0	103	36.155	5.182	0	0	0	97	0	CYGB	intronic	NA
RCC_T8--4	chr17:74527502	C	NA	50	0	50	34.840	7.257	0	0	0	44	0	CYGB	intronic	NA
RCC_T8--5	chr17:74527502	C	T	64	0.188	52	32.712	10.340	12	29.000	7.616	43	6	CYGB	intronic	NA
RCC_T8--GL	chr17:74527502	C	NA	70	0	70	32.843	9.573	0	0	0	55	0	CYGB	intronic	NA
RCC_T8--1	chr18:26232314	A	NA	147	0	147	35.925	7.627	0	0	0	134	0	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--2	chr18:26232314	A	NA	160	0	159	36.264	5.635	0	0	0	147	0	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--3	chr18:26232314	A	NA	204	0	204	35.848	7.840	0	0	0	189	0	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--4	chr18:26232314	A	NA	177	0	173	36.422	6.017	0	0	0	159	0	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--5	chr18:26232314	A	T	191	0.157	161	35.161	7.645	30	35.033	5.048	141	27	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--GL	chr18:26232314	A	NA	170	0	169	36.349	6.455	0	0	0	156	0	CDH2(dist=474869),MIR302F(dist=1646562)	intergenic	NA
RCC_T8--1	chr18:9553361	T	NA	138	0	138	36.370	5.850	0	0	0	131	0	PPP4R1	exonic	synonymous_SNV
RCC_T8--2	chr18:9553361	T	NA	154	0	154	36.253	5.055	0	0	0	143	0	PPP4R1	exonic	synonymous_SNV
RCC_T8--3	chr18:9553361	T	NA	109	0	109	36.789	4.746	0	0	0	101	0	PPP4R1	exonic	synonymous_SNV
RCC_T8--4	chr18:9553361	T	NA	110	0	110	36.536	5.413	0	0	0	102	0	PPP4R1	exonic	synonymous_SNV
RCC_T8--5	chr18:9553361	T	C	157	0.185	128	36.781	5.526	29	36.793	3.342	121	28	PPP4R1	exonic	synonymous_SNV
RCC_T8--GL	chr18:9553361	T	NA	109	0	108	36.417	5.941	0	0	0	101	0	PPP4R1	exonic	synonymous_SNV
RCC_T8--1	chr19:17652964	T	A	65	0.154	54	32.870	10.025	10	34.400	5.441	44	9	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--2	chr19:17652964	T	NA	113	0	113	33.841	7.372	0	0	0	97	0	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--3	chr19:17652964	T	NA	89	0	88	32.182	9.519	0	0	0	67	0	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--4	chr19:17652964	T	NA	78	0	77	31.182	10.161	0	0	0	53	0	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--5	chr19:17652964	T	NA	140	0	139	31.899	10.553	0	0	0	107	0	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--GL	chr19:17652964	T	NA	94	0	94	32.660	8.504	0	0	0	74	0	FAM129C	exonic	nonsynonymous_SNV
RCC_T8--1	chr19:18286075	C	NA	50	0	50	33.660	8.397	0	0	0	41	0	IFI30	intronic	NA
RCC_T8--2	chr19:18286075	C	NA	46	0	46	31.978	8.418	0	0	0	34	0	IFI30	intronic	NA
RCC_T8--3	chr19:18286075	C	T	43	0.279	30	34.667	4.122	12	33.167	4.988	27	10	IFI30	intronic	NA
RCC_T8--4	chr19:18286075	C	NA	35	0	35	32.600	8.558	0	0	0	27	0	IFI30	intronic	NA
RCC_T8--5	chr19:18286075	C	NA	62	0	62	29.774	10.960	0	0	0	42	0	IFI30	intronic	NA
RCC_T8--GL	chr19:18286075	C	NA	45	0	45	31.022	10.347	0	0	0	32	0	IFI30	intronic	NA
RCC_T8--1	chr19:2226271	A	NA	158	0	157	28.032	12.246	0	0	0	93	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--2	chr19:2226271	A	NA	230	0	224	25.808	13.369	0	0	0	111	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--3	chr19:2226271	A	C	244	0.193	197	25.848	13.590	47	24.340	14.762	112	27	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--4	chr19:2226271	A	NA	227	0	225	27.062	12.537	0	0	0	128	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--5	chr19:2226271	A	C	261	0.203	208	27.447	13.274	53	28.151	12.709	128	33	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--GL	chr19:2226271	A	NA	215	0	212	26.679	13.015	0	0	0	114	0	DOT1L	exonic	nonsynonymous_SNV
RCC_T8--1	chr19:49840559	C	NA	25	0	25	32.240	12.156	0	0	0	20	0	CD37	intronic	NA
RCC_T8--2	chr19:49840559	C	NA	45	0	45	36.667	6.994	0	0	0	41	0	CD37	intronic	NA
RCC_T8--3	chr19:49840559	C	NA	25	0	25	33.000	10.128	0	0	0	22	0	CD37	intronic	NA
RCC_T8--4	chr19:49840559	C	NA	25	0	25	36.840	4.836	0	0	0	23	0	CD37	intronic	NA
RCC_T8--5	chr19:49840559	C	T	47	0.362	30	36.100	4.506	17	37.176	4.475	29	16	CD37	intronic	NA
RCC_T8--GL	chr19:49840559	C	NA	43	0	43	32.698	11.757	0	0	0	37	0	CD37	intronic	NA
RCC_T8--1	chr20:25187891	C	NA	37	0	37	32.946	10.252	0	0	0	31	0	ENTPD6	exonic	synonymous_SNV
RCC_T8--2	chr20:25187891	C	NA	80	0	80	33.525	8.185	0	0	0	69	0	ENTPD6	exonic	synonymous_SNV
RCC_T8--3	chr20:25187891	C	A	62	0.210	48	31.042	9.365	13	30.462	7.891	34	7	ENTPD6	exonic	synonymous_SNV
RCC_T8--4	chr20:25187891	C	A	59	0.136	50	30.180	10.694	8	28.250	12.714	38	5	ENTPD6	exonic	synonymous_SNV
RCC_T8--5	chr20:25187891	C	A	88	0.216	69	30.928	10.694	19	28.211	12.761	53	13	ENTPD6	exonic	synonymous_SNV
RCC_T8--GL	chr20:25187891	C	NA	69	0	69	29.797	11.018	0	0	0	49	0	ENTPD6	exonic	synonymous_SNV
RCC_T8--1	chr20:34148016	C	NA	150	0	149	32.456	10.324	0	0	0	118	0	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--2	chr20:34148016	C	NA	199	0	198	33.066	9.449	0	0	0	162	0	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--3	chr20:34148016	C	G	215	0.209	170	33.900	8.866	45	34.756	8.788	142	38	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--4	chr20:34148016	C	G	175	0.069	163	33.135	10.177	12	31.250	11.185	140	9	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--5	chr20:34148016	C	G	236	0.157	198	32.283	9.781	37	33.622	7.432	156	32	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--GL	chr20:34148016	C	NA	243	0	242	31.678	10.573	0	0	0	188	0	ERGIC3(dist=2611),SPAG4(dist=55793)	intergenic	NA
RCC_T8--1	chr2:102792783	A	NA	65	0	65	36.646	4.964	0	0	0	62	0	IL1R1	intronic	NA
RCC_T8--2	chr2:102792783	A	NA	69	0	69	36.957	4.632	0	0	0	64	0	IL1R1	intronic	NA
RCC_T8--3	chr2:102792783	A	NA	61	0	61	35.443	6.536	0	0	0	54	0	IL1R1	intronic	NA
RCC_T8--4	chr2:102792783	A	G	66	0.136	57	35.649	6.728	9	38.222	3.346	50	9	IL1R1	intronic	NA
RCC_T8--5	chr2:102792783	A	NA	78	0	77	36.364	6.458	0	0	0	72	0	IL1R1	intronic	NA
RCC_T8--GL	chr2:102792783	A	NA	46	0	46	36.696	6.394	0	0	0	42	0	IL1R1	intronic	NA
RCC_T8--1	chr21:14414959	C	T	33	0.091	30	37.467	4.569	3	38.667	4.041	29	3	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--2	chr21:14414959	C	T	55	0.036	53	37.604	6.221	2	41.000	0.000	49	2	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--3	chr21:14414959	C	T	39	0.103	35	38.314	3.123	4	39.250	2.872	34	4	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--4	chr21:14414959	C	T	29	0.172	24	38.417	3.309	5	37.400	2.302	24	5	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--5	chr21:14414959	C	T	61	0.066	57	38.070	3.041	4	40.500	1.000	56	4	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--GL	chr21:14414959	C	NA	36	0	36	38.139	2.451	0	0	0	36	0	ANKRD30BP2	ncRNA_intronic	NA
RCC_T8--1	chr2:135781036	G	T	37	0.270	27	38.037	2.928	10	33.000	8.844	27	9	MAP3K19	intronic	NA
RCC_T8--2	chr2:135781036	G	T	55	0.055	52	37.038	6.129	3	38.333	1.155	49	3	MAP3K19	intronic	NA
RCC_T8--3	chr2:135781036	G	T	48	0.271	35	36.457	3.337	13	38.308	3.225	34	13	MAP3K19	intronic	NA
RCC_T8--4	chr2:135781036	G	T	44	0.068	41	37.488	3.729	3	37.667	1.155	40	3	MAP3K19	intronic	NA
RCC_T8--5	chr2:135781036	G	T	62	0.258	46	36.587	6.421	16	37.125	4.646	43	15	MAP3K19	intronic	NA
RCC_T8--GL	chr2:135781036	G	NA	39	0	38	35.263	7.787	0	0	0	33	0	MAP3K19	intronic	NA
RCC_T8--1	chr21:43679559	T	A	85	0.224	65	32.615	9.852	19	33.263	6.797	51	16	ABCG1	intronic	NA
RCC_T8--2	chr21:43679559	T	A	147	0.048	138	34.058	8.373	7	33.286	14.032	120	6	ABCG1	intronic	NA
RCC_T8--3	chr21:43679559	T	A	129	0.271	94	36.053	5.837	35	32.714	9.051	86	27	ABCG1	intronic	NA
RCC_T8--4	chr21:43679559	T	A	91	0.121	80	33.975	8.755	11	32.727	10.882	68	9	ABCG1	intronic	NA
RCC_T8--5	chr21:43679559	T	A	120	0.150	102	34.069	8.774	18	31.556	9.853	89	12	ABCG1	intronic	NA
RCC_T8--GL	chr21:43679559	T	NA	101	0	101	35.317	5.921	0	0	0	86	0	ABCG1	intronic	NA
RCC_T8--1	chr21:43767440	C	NA	16	0	16	38.000	2.898	0	0	0	16	0	TFF2	intronic	NA
RCC_T8--2	chr21:43767440	C	NA	37	0	37	36.405	6.644	0	0	0	36	0	TFF2	intronic	NA
RCC_T8--3	chr21:43767440	C	A	36	0.222	28	36.357	7.945	8	37.000	4.472	25	7	TFF2	intronic	NA
RCC_T8--4	chr21:43767440	C	NA	26	0	26	35.808	7.467	0	0	0	25	0	TFF2	intronic	NA
RCC_T8--5	chr21:43767440	C	A	27	0.185	22	36.318	6.050	5	38.000	2.915	20	5	TFF2	intronic	NA
RCC_T8--GL	chr21:43767440	C	NA	35	0	35	37.371	3.540	0	0	0	34	0	TFF2	intronic	NA
RCC_T8--1	chr2:169763170	G	A	159	0.176	131	38.214	4.474	28	35.321	9.802	127	26	G6PC2	intronic	NA
RCC_T8--2	chr2:169763170	G	NA	214	0	212	37.000	5.057	0	0	0	202	0	G6PC2	intronic	NA
RCC_T8--3	chr2:169763170	G	NA	256	0	256	36.758	6.061	0	0	0	244	0	G6PC2	intronic	NA
RCC_T8--4	chr2:169763170	G	NA	163	0	163	36.307	6.816	0	0	0	156	0	G6PC2	intronic	NA
RCC_T8--5	chr2:169763170	G	NA	179	0	179	36.799	4.887	0	0	0	170	0	G6PC2	intronic	NA
RCC_T8--GL	chr2:169763170	G	NA	206	0	206	36.306	6.571	0	0	0	193	0	G6PC2	intronic	NA
RCC_T8--1	chr2:220474339	T	NA	48	0	47	31.766	9.617	0	0	0	37	0	STK11IP	intronic	NA
RCC_T8--2	chr2:220474339	T	NA	85	0	84	30.810	10.096	0	0	0	62	0	STK11IP	intronic	NA
RCC_T8--3	chr2:220474339	T	A	63	0.190	51	32.804	7.183	12	35.500	4.123	41	10	STK11IP	intronic	NA
RCC_T8--4	chr2:220474339	T	A	71	0.070	66	31.818	8.114	5	33.800	9.524	49	4	STK11IP	intronic	NA
RCC_T8--5	chr2:220474339	T	A	95	0.158	79	31.646	8.868	15	33.400	5.604	62	12	STK11IP	intronic	NA
RCC_T8--GL	chr2:220474339	T	NA	64	0	64	33.594	6.081	0	0	0	57	0	STK11IP	intronic	NA
RCC_T8--1	chr22:21328822	G	NA	38	0	38	34.816	6.900	0	0	0	34	0	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--2	chr22:21328822	G	NA	71	0	71	34.028	8.539	0	0	0	59	0	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--3	chr22:21328822	G	T	93	0.290	65	32.815	9.940	27	31.778	13.039	53	22	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--4	chr22:21328822	G	NA	44	0	44	35.591	6.351	0	0	0	40	0	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--5	chr22:21328822	G	NA	53	0	53	31.868	11.672	0	0	0	42	0	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--GL	chr22:21328822	G	NA	52	0	52	34.058	8.149	0	0	0	44	0	AIFM3	exonic	nonsynonymous_SNV
RCC_T8--1	chr22:32547878	G	T	52	0.038	38	33.421	9.003	2	33.000	2.828	32	2	C22orf42	intronic	NA
RCC_T8--2	chr22:32547878	G	T	67	0.015	50	34.440	7.972	1	33.000	0.000	44	1	C22orf42	intronic	NA
RCC_T8--3	chr22:32547878	G	T	56	0.054	45	33.933	9.435	3	34.000	1.000	39	3	C22orf42	intronic	NA
RCC_T8--4	chr22:32547878	G	T	63	0.175	45	34.022	9.087	11	32.909	3.208	40	10	C22orf42	intronic	NA
RCC_T8--5	chr22:32547878	G	T	97	0.062	70	35.843	6.271	6	33.000	1.414	63	6	C22orf42	intronic	NA
RCC_T8--GL	chr22:32547878	G	NA	50	0	41	33.829	8.789	0	0	0	34	0	C22orf42	intronic	NA
RCC_T8--1	chr22:50493010	C	NA	28	0	28	37.357	3.434	0	0	0	27	0	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--2	chr22:50493010	C	NA	45	0	45	33.067	9.355	0	0	0	39	0	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--3	chr22:50493010	C	NA	32	0	32	33.281	8.992	0	0	0	27	0	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--4	chr22:50493010	C	A	37	0.054	35	32.743	5.948	2	39.500	0.707	24	2	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--5	chr22:50493010	C	A	41	0.293	29	34.414	7.571	12	28.000	11.677	26	7	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--GL	chr22:50493010	C	NA	36	0	36	31.194	10.593	0	0	0	29	0	IL17REL(dist=41955),MLC1(dist=4810)	intergenic	NA
RCC_T8--1	chr3:126226811	A	NA	147	0	147	28.605	12.643	0	0	0	96	0	UROC1	exonic	nonsynonymous_SNV
RCC_T8--2	chr3:126226811	A	NA	269	0	265	27.962	12.536	0	0	0	169	0	UROC1	exonic	nonsynonymous_SNV
RCC_T8--3	chr3:126226811	A	C	230	0.196	183	25.333	13.245	45	28.844	13.443	99	31	UROC1	exonic	nonsynonymous_SNV
RCC_T8--4	chr3:126226811	A	NA	193	0	191	27.115	13.395	0	0	0	111	0	UROC1	exonic	nonsynonymous_SNV
RCC_T8--5	chr3:126226811	A	C	231	0.074	211	25.725	12.913	17	24.412	14.366	115	10	UROC1	exonic	nonsynonymous_SNV
RCC_T8--GL	chr3:126226811	A	NA	225	0	219	26.909	12.867	0	0	0	127	0	UROC1	exonic	nonsynonymous_SNV
RCC_T8--1	chr3:49688508	C	NA	50	0	50	33.600	11.344	0	0	0	42	0	BSN	exonic	nonsynonymous_SNV
RCC_T8--2	chr3:49688508	C	NA	99	0	98	32.837	9.433	0	0	0	75	0	BSN	exonic	nonsynonymous_SNV
RCC_T8--3	chr3:49688508	C	NA	55	0	55	32.909	10.028	0	0	0	43	0	BSN	exonic	nonsynonymous_SNV
RCC_T8--4	chr3:49688508	C	NA	47	0	47	36.149	6.711	0	0	0	43	0	BSN	exonic	nonsynonymous_SNV
RCC_T8--5	chr3:49688508	C	T	84	0.250	63	32.032	10.072	21	37.952	3.930	49	20	BSN	exonic	nonsynonymous_SNV
RCC_T8--GL	chr3:49688508	C	NA	81	0	81	32.679	10.491	0	0	0	67	0	BSN	exonic	nonsynonymous_SNV
RCC_T8--1	chr5:168180221	T	C	92	0.152	78	30.833	9.715	14	35.643	6.021	56	13	SLIT3	intronic	NA
RCC_T8--2	chr5:168180221	T	NA	118	0	116	32.457	8.404	0	0	0	95	0	SLIT3	intronic	NA
RCC_T8--3	chr5:168180221	T	NA	141	0	141	32.440	8.542	0	0	0	116	0	SLIT3	intronic	NA
RCC_T8--4	chr5:168180221	T	NA	118	0	117	31.590	8.682	0	0	0	83	0	SLIT3	intronic	NA
RCC_T8--5	chr5:168180221	T	NA	156	0	154	32.468	7.813	0	0	0	126	0	SLIT3	intronic	NA
RCC_T8--GL	chr5:168180221	T	NA	100	0	100	32.050	8.687	0	0	0	81	0	SLIT3	intronic	NA
RCC_T8--1	chr5:175993919	G	NA	73	0	73	37.384	5.187	0	0	0	72	0	CDHR2	intronic	NA
RCC_T8--2	chr5:175993919	G	NA	69	0	69	35.623	8.186	0	0	0	63	0	CDHR2	intronic	NA
RCC_T8--3	chr5:175993919	G	T	44	0.159	36	34.806	10.555	7	37.857	3.848	31	7	CDHR2	intronic	NA
RCC_T8--4	chr5:175993919	G	T	53	0.245	40	36.100	5.310	13	35.615	8.704	34	12	CDHR2	intronic	NA
RCC_T8--5	chr5:175993919	G	T	94	0.074	87	35.391	8.468	7	35.286	8.381	78	6	CDHR2	intronic	NA
RCC_T8--GL	chr5:175993919	G	NA	37	0	37	36.297	6.960	0	0	0	34	0	CDHR2	intronic	NA
RCC_T8--1	chr6:117841041	G	A	45	0.156	38	35.579	6.021	7	34.571	6.024	34	6	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--2	chr6:117841041	G	A	63	0.063	59	31.915	10.736	4	39.500	3.000	48	4	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--3	chr6:117841041	G	A	85	0.165	71	34.690	6.063	14	30.143	13.733	64	9	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--4	chr6:117841041	G	A	52	0.077	48	33.958	6.785	4	33.250	4.031	40	3	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--5	chr6:117841041	G	A	68	0.162	57	34.000	7.438	11	34.091	10.913	49	10	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--GL	chr6:117841041	G	NA	48	0	48	35.771	5.803	0	0	0	45	0	DCBLD1	exonic	nonsynonymous_SNV
RCC_T8--1	chr6:132966457	T	C	107	0.196	86	37.767	6.192	21	38.762	3.404	81	20	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--2	chr6:132966457	T	NA	115	0	115	38.365	5.067	0	0	0	111	0	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--3	chr6:132966457	T	NA	136	0	136	38.897	3.892	0	0	0	132	0	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--4	chr6:132966457	T	NA	87	0	87	37.425	6.551	0	0	0	83	0	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--5	chr6:132966457	T	NA	138	0	138	38.457	4.262	0	0	0	135	0	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--GL	chr6:132966457	T	NA	107	0	106	37.179	6.972	0	0	0	101	0	TAAR1	exonic	nonsynonymous_SNV
RCC_T8--1	chr6:137329830	C	NA	50	0	50	34.180	10.071	0	0	0	45	0	IL20RA	exonic	synonymous_SNV
RCC_T8--2	chr6:137329830	C	NA	75	0	74	31.622	9.931	0	0	0	58	0	IL20RA	exonic	synonymous_SNV
RCC_T8--3	chr6:137329830	C	T	84	0.190	68	34.176	7.483	16	34.312	8.972	55	15	IL20RA	exonic	synonymous_SNV
RCC_T8--4	chr6:137329830	C	T	59	0.085	54	33.204	8.920	5	28.200	14.923	43	4	IL20RA	exonic	synonymous_SNV
RCC_T8--5	chr6:137329830	C	T	71	0.183	58	34.155	9.086	13	32.154	12.786	51	11	IL20RA	exonic	synonymous_SNV
RCC_T8--GL	chr6:137329830	C	NA	63	0	63	33.603	7.420	0	0	0	50	0	IL20RA	exonic	synonymous_SNV
RCC_T8--1	chr6:139242335	A	NA	30	0	30	36.633	3.045	0	0	0	30	0	REPS1	intronic	NA
RCC_T8--2	chr6:139242335	A	C	38	0.053	36	37.222	2.642	2	37.500	4.950	36	2	REPS1	intronic	NA
RCC_T8--3	chr6:139242335	A	C	32	0.344	21	37.762	2.567	11	36.727	3.101	21	11	REPS1	intronic	NA
RCC_T8--4	chr6:139242335	A	C	25	0.120	22	36.000	7.976	3	38.333	3.055	21	3	REPS1	intronic	NA
RCC_T8--5	chr6:139242335	A	C	61	0.197	49	36.776	5.760	12	35.917	9.346	48	11	REPS1	intronic	NA
RCC_T8--GL	chr6:139242335	A	NA	41	0	41	36.415	3.557	0	0	0	40	0	REPS1	intronic	NA
RCC_T8--1	chr6:43273236	C	NA	52	0	52	36.808	4.459	0	0	0	48	0	CRIP3,SLC22A7	UTR3	NA
RCC_T8--2	chr6:43273236	C	NA	83	0	82	35.012	8.820	0	0	0	70	0	CRIP3,SLC22A7	UTR3	NA
RCC_T8--3	chr6:43273236	C	NA	87	0	87	35.759	8.572	0	0	0	79	0	CRIP3,SLC22A7	UTR3	NA
RCC_T8--4	chr6:43273236	C	A	70	0.186	57	35.000	7.486	13	34.692	3.860	48	12	CRIP3,SLC22A7	UTR3	NA
RCC_T8--5	chr6:43273236	C	NA	78	0	78	36.654	6.839	0	0	0	71	0	CRIP3,SLC22A7	UTR3	NA
RCC_T8--GL	chr6:43273236	C	NA	86	0	86	34.942	9.938	0	0	0	77	0	CRIP3,SLC22A7	UTR3	NA
RCC_T8--1	chr7:128585835	G	NA	30	0	29	33.448	7.462	0	0	0	23	0	IRF5	intronic	NA
RCC_T8--2	chr7:128585835	G	NA	57	0	57	34.684	6.274	0	0	0	51	0	IRF5	intronic	NA
RCC_T8--3	chr7:128585835	G	NA	54	0	54	33.074	10.110	0	0	0	45	0	IRF5	intronic	NA
RCC_T8--4	chr7:128585835	G	NA	46	0	46	34.957	7.507	0	0	0	40	0	IRF5	intronic	NA
RCC_T8--5	chr7:128585835	G	A	64	0.250	48	33.708	9.426	16	33.062	10.680	44	13	IRF5	intronic	NA
RCC_T8--GL	chr7:128585835	G	NA	44	0	44	34.795	6.677	0	0	0	41	0	IRF5	intronic	NA
RCC_T8--1	chr7:73097921	G	C	33	0.212	26	32.846	9.910	7	30.000	5.260	22	3	WBSCR22	UTR5	NA
RCC_T8--2	chr7:73097921	G	NA	69	0	69	32.565	9.303	0	0	0	54	0	WBSCR22	UTR5	NA
RCC_T8--3	chr7:73097921	G	NA	29	0	29	30.310	12.904	0	0	0	23	0	WBSCR22	UTR5	NA
RCC_T8--4	chr7:73097921	G	NA	37	0	36	30.611	12.654	0	0	0	29	0	WBSCR22	UTR5	NA
RCC_T8--5	chr7:73097921	G	NA	81	0	80	27.875	14.031	0	0	0	56	0	WBSCR22	UTR5	NA
RCC_T8--GL	chr7:73097921	G	NA	45	0	45	30.000	11.615	0	0	0	34	0	WBSCR22	UTR5	NA
RCC_T8--1	chr7:89854310	G	NA	36	0	36	36.111	2.876	0	0	0	35	0	STEAP2	intronic	NA
RCC_T8--2	chr7:89854310	G	NA	33	0	33	35.364	6.712	0	0	0	31	0	STEAP2	intronic	NA
RCC_T8--3	chr7:89854310	G	NA	39	0	39	33.667	6.071	0	0	0	33	0	STEAP2	intronic	NA
RCC_T8--4	chr7:89854310	G	NA	18	0	18	35.667	3.218	0	0	0	17	0	STEAP2	intronic	NA
RCC_T8--5	chr7:89854310	G	A	44	0.409	26	36.462	3.010	18	35.611	4.132	25	15	STEAP2	intronic	NA
RCC_T8--GL	chr7:89854310	G	NA	35	0	35	34.886	4.939	0	0	0	31	0	STEAP2	intronic	NA
RCC_T8--1	chr8:104987776	A	T	39	0.205	31	36.710	4.900	8	37.875	5.303	29	7	RIMS2	intronic	NA
RCC_T8--2	chr8:104987776	A	NA	38	0	38	37.789	6.515	0	0	0	37	0	RIMS2	intronic	NA
RCC_T8--3	chr8:104987776	A	NA	56	0	56	36.232	9.516	0	0	0	49	0	RIMS2	intronic	NA
RCC_T8--4	chr8:104987776	A	NA	32	0	32	38.219	3.013	0	0	0	31	0	RIMS2	intronic	NA
RCC_T8--5	chr8:104987776	A	NA	32	0	32	39.312	2.147	0	0	0	32	0	RIMS2	intronic	NA
RCC_T8--GL	chr8:104987776	A	NA	37	0	37	37.189	3.558	0	0	0	36	0	RIMS2	intronic	NA
RCC_T8--1	chr8:105263327	C	NA	70	0	70	36.786	5.537	0	0	0	67	0	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--2	chr8:105263327	C	NA	87	0	87	36.149	4.360	0	0	0	83	0	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--3	chr8:105263327	C	T	95	0.137	82	36.244	7.748	13	34.385	9.278	73	10	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--4	chr8:105263327	C	T	78	0.051	74	36.919	5.358	4	30.000	10.708	69	2	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--5	chr8:105263327	C	T	84	0.179	69	35.000	8.430	15	35.933	6.617	62	13	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--GL	chr8:105263327	C	NA	87	0	86	35.407	7.248	0	0	0	78	0	RIMS2	exonic	nonsynonymous_SNV
RCC_T8--1	chr8:139767712	G	C	279	0.176	230	35.183	7.634	49	35.776	5.846	202	47	COL22A1	intronic	NA
RCC_T8--2	chr8:139767712	G	C	426	0.014	420	34.555	8.356	6	37.333	2.733	374	6	COL22A1	intronic	NA
RCC_T8--3	chr8:139767712	G	C	415	0.142	355	34.763	8.922	59	35.017	7.877	312	55	COL22A1	intronic	NA
RCC_T8--4	chr8:139767712	G	C	380	0.103	341	35.457	7.021	39	35.179	8.861	304	35	COL22A1	intronic	NA
RCC_T8--5	chr8:139767712	G	C	454	0.176	373	35.775	6.362	80	36.888	4.050	344	77	COL22A1	intronic	NA
RCC_T8--GL	chr8:139767712	G	NA	338	0	338	34.710	7.659	0	0	0	302	0	COL22A1	intronic	NA
RCC_T8--1	chr8:18393034	G	T	36	0.167	29	37.276	2.548	6	37.333	2.944	29	6	PSD3	UTR3	NA
RCC_T8--2	chr8:18393034	G	NA	57	0	57	36.772	6.525	0	0	0	53	0	PSD3	UTR3	NA
RCC_T8--3	chr8:18393034	G	NA	25	0	25	34.040	8.648	0	0	0	21	0	PSD3	UTR3	NA
RCC_T8--4	chr8:18393034	G	NA	29	0	29	33.552	9.778	0	0	0	25	0	PSD3	UTR3	NA
RCC_T8--5	chr8:18393034	G	NA	72	0	72	37.569	3.688	0	0	0	70	0	PSD3	UTR3	NA
RCC_T8--GL	chr8:18393034	G	NA	48	0	48	36.292	6.368	0	0	0	45	0	PSD3	UTR3	NA
RCC_T8--1	chr8:38872100	G	NA	180	0	180	36.667	5.764	0	0	0	169	0	ADAM9	intronic	NA
RCC_T8--2	chr8:38872100	G	NA	196	0	195	36.692	6.990	0	0	0	186	0	ADAM9	intronic	NA
RCC_T8--3	chr8:38872100	G	NA	194	0	194	36.402	5.553	0	0	0	185	0	ADAM9	intronic	NA
RCC_T8--4	chr8:38872100	G	NA	156	0	156	36.263	7.545	0	0	0	142	0	ADAM9	intronic	NA
RCC_T8--5	chr8:38872100	G	T	191	0.220	149	36.718	6.403	42	37.214	3.633	140	40	ADAM9	intronic	NA
RCC_T8--GL	chr8:38872100	G	NA	165	0	165	36.491	6.322	0	0	0	154	0	ADAM9	intronic	NA
RCC_T8--1	chr8:73849748	A	G	199	0.106	178	35.034	5.964	21	35.667	8.046	163	20	KCNB2	exonic	nonsynonymous_SNV
RCC_T8--2	chr8:73849748	A	G	284	0.025	277	35.105	6.932	7	28.714	12.776	254	5	KCNB2	exonic	nonsynonymous_SNV
RCC_T8--3	chr8:73849748	A	G	278	0.176	229	34.934	7.338	49	34.918	6.582	207	45	KCNB2	exonic	nonsynonymous_SNV
RCC_T8--4	chr8:73849748	A	G	225	0.147	192	34.073	9.235	33	35.394	7.806	170	29	KCNB2	exonic	nonsynonymous_SNV
RCC_T8--5	chr8:73849748	A	G	396	0.197	318	35.421	6.319	78	33.910	9.230	291	69	KCNB2	exonic	nonsynonymous_SNV
RCC_T8--GL	chr8:73849748	A	NA	266	0	266	35.053	6.973	0	0	0	243	0	KCNB2	exonic	nonsynonymous_SNV
RCC_T9--1	chr10:122340230	T	G	75	0.387	45	36.689	7.999	29	35.724	6.391	42	24	PPAPDC1A	intronic	NA
RCC_T9--2	chr10:122340230	T	G	43	0.395	26	36.577	6.830	17	37.647	3.121	25	17	PPAPDC1A	intronic	NA
RCC_T9--3	chr10:122340230	T	G	61	0.295	43	37.186	6.656	18	37.500	5.261	40	17	PPAPDC1A	intronic	NA
RCC_T9--4	chr10:122340230	T	G	34	0.206	27	37.741	7.517	7	28.571	16.682	26	5	PPAPDC1A	intronic	NA
RCC_T9--5	chr10:122340230	T	G	36	0.306	25	35.240	8.447	11	33.818	10.998	22	10	PPAPDC1A	intronic	NA
RCC_T9--GL	chr10:122340230	T	NA	42	0	42	35.262	8.115	0	0	0	37	0	PPAPDC1A	intronic	NA
RCC_T9--1	chr10:122643335	T	A	120	0.242	91	38.549	2.478	29	38.828	3.025	91	28	WDR11	exonic	nonsynonymous_SNV
RCC_T9--2	chr10:122643335	T	A	136	0.243	103	37.699	4.450	33	36.758	7.408	102	31	WDR11	exonic	nonsynonymous_SNV
RCC_T9--3	chr10:122643335	T	A	112	0.286	80	37.650	4.999	32	38.000	7.007	77	31	WDR11	exonic	nonsynonymous_SNV
RCC_T9--4	chr10:122643335	T	A	110	0.209	87	37.678	4.961	23	37.261	6.790	85	22	WDR11	exonic	nonsynonymous_SNV
RCC_T9--5	chr10:122643335	T	A	84	0.179	69	37.841	4.231	15	37.600	2.947	67	15	WDR11	exonic	nonsynonymous_SNV
RCC_T9--GL	chr10:122643335	T	NA	163	0	163	37.018	5.326	0	0	0	155	0	WDR11	exonic	nonsynonymous_SNV
RCC_T9--1	chr10:122643336	G	T	121	0.248	91	38.560	2.697	30	38.667	3.089	91	29	WDR11	exonic	nonsynonymous_SNV
RCC_T9--2	chr10:122643336	G	T	136	0.235	103	37.408	5.850	32	37.969	4.020	100	31	WDR11	exonic	nonsynonymous_SNV
RCC_T9--3	chr10:122643336	G	T	113	0.292	80	38.050	4.765	33	37.576	6.892	79	32	WDR11	exonic	nonsynonymous_SNV
RCC_T9--4	chr10:122643336	G	T	112	0.205	88	37.727	5.319	23	38.261	3.137	85	23	WDR11	exonic	nonsynonymous_SNV
RCC_T9--5	chr10:122643336	G	T	85	0.176	70	37.671	5.050	15	37.467	2.748	68	15	WDR11	exonic	nonsynonymous_SNV
RCC_T9--GL	chr10:122643336	G	NA	161	0	161	37.366	4.911	0	0	0	157	0	WDR11	exonic	nonsynonymous_SNV
RCC_T9--1	chr10:42387928	T	A	207	0.357	132	38.061	4.575	74	39.243	2.144	128	73	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--2	chr10:42387928	T	NA	86	0	86	38.291	5.062	0	0	0	82	0	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--3	chr10:42387928	T	A	143	0.483	74	38.243	4.499	69	38.870	3.217	71	68	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--4	chr10:42387928	T	NA	43	0	43	37.767	7.618	0	0	0	41	0	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--5	chr10:42387928	T	A	38	0.026	37	37.270	7.332	1	39.000	0.000	34	1	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--GL	chr10:42387928	T	NA	47	0	46	37.478	6.160	0	0	0	45	0	NONE(dist=NONE),LOC441666(dist=439386)	intergenic	NA
RCC_T9--1	chr10:42387929	C	A	209	0.364	132	38.470	4.753	76	39.184	2.057	127	75	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--2	chr10:42387929	C	NA	87	0	87	39.092	3.914	0	0	0	85	0	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--3	chr10:42387929	C	A	143	0.462	74	38.743	2.877	66	38.894	3.216	73	65	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--4	chr10:42387929	C	NA	43	0	43	38.605	6.662	0	0	0	41	0	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--5	chr10:42387929	C	NA	38	0	38	38.421	6.458	0	0	0	37	0	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--GL	chr10:42387929	C	NA	48	0	48	37.729	6.744	0	0	0	46	0	NONE(dist=NONE),LOC441666(dist=439385)	intergenic	NA
RCC_T9--1	chr10:42387974	T	C	192	0.422	109	37.789	4.771	81	38.420	4.888	105	78	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--2	chr10:42387974	T	NA	69	0	69	35.145	8.581	0	0	0	62	0	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--3	chr10:42387974	T	C	125	0.560	55	36.782	5.906	70	38.629	3.200	50	68	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--4	chr10:42387974	T	NA	32	0	32	37.812	2.934	0	0	0	32	0	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--5	chr10:42387974	T	NA	38	0	38	37.974	2.466	0	0	0	38	0	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--GL	chr10:42387974	T	NA	44	0	44	36.727	3.938	0	0	0	42	0	NONE(dist=NONE),LOC441666(dist=439340)	intergenic	NA
RCC_T9--1	chr10:42600224	T	C	129	0.504	63	37.635	3.769	65	38.385	5.165	60	63	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--2	chr10:42600224	T	C	66	0.076	61	36.164	7.285	5	33.200	4.147	56	4	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--3	chr10:42600224	T	C	59	0.610	23	38.435	2.921	36	38.750	2.477	23	36	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--4	chr10:42600224	T	C	36	0.056	34	37.353	4.585	2	35.000	0.000	33	2	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--5	chr10:42600224	T	NA	26	0	25	36.640	4.812	0	0	0	24	0	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--GL	chr10:42600224	T	NA	45	0	44	36.864	6.519	0	0	0	41	0	NONE(dist=NONE),LOC441666(dist=227090)	intergenic	NA
RCC_T9--1	chr10:50818695	T	C	52	0.346	34	30.882	9.660	18	34.056	9.006	26	16	SLC18A3	UTR5	NA
RCC_T9--2	chr10:50818695	T	C	121	0.331	80	33.513	8.082	40	34.225	5.968	70	37	SLC18A3	UTR5	NA
RCC_T9--3	chr10:50818695	T	NA	105	0	105	32.200	9.834	0	0	0	86	0	SLC18A3	UTR5	NA
RCC_T9--4	chr10:50818695	T	C	74	0.216	58	33.638	8.132	16	34.625	5.560	51	15	SLC18A3	UTR5	NA
RCC_T9--5	chr10:50818695	T	C	54	0.296	38	29.395	11.985	16	25.250	12.918	29	9	SLC18A3	UTR5	NA
RCC_T9--GL	chr10:50818695	T	NA	46	0	45	30.333	8.671	0	0	0	32	0	SLC18A3	UTR5	NA
RCC_T9--1	chr11:1088827	C	T	82	0.244	60	37.383	4.109	20	33.250	8.032	56	16	MUC2	exonic	synonymous_SNV
RCC_T9--2	chr11:1088827	C	T	66	0.227	51	35.706	8.401	15	37.000	3.229	46	15	MUC2	exonic	synonymous_SNV
RCC_T9--3	chr11:1088827	C	T	68	0.324	46	35.500	8.466	22	36.364	4.315	42	20	MUC2	exonic	synonymous_SNV
RCC_T9--4	chr11:1088827	C	T	47	0.234	35	35.486	5.255	11	38.273	3.003	32	11	MUC2	exonic	synonymous_SNV
RCC_T9--5	chr11:1088827	C	T	59	0.169	49	32.694	10.306	10	36.200	4.392	38	9	MUC2	exonic	synonymous_SNV
RCC_T9--GL	chr11:1088827	C	NA	39	0	39	36.744	4.935	0	0	0	37	0	MUC2	exonic	synonymous_SNV
RCC_T9--1	chr1:111060770	C	NA	124	0	124	34.081	8.626	0	0	0	109	0	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:111060770	C	NA	120	0	120	34.375	8.918	0	0	0	108	0	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:111060770	C	NA	111	0	111	34.730	8.799	0	0	0	97	0	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:111060770	C	T	86	0.128	74	36.757	5.053	11	38.182	3.628	68	11	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:111060770	C	T	88	0.034	84	35.631	5.720	3	35.333	2.309	79	3	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:111060770	C	NA	80	0	79	36.241	7.931	0	0	0	74	0	KCNA10	exonic	nonsynonymous_SNV
RCC_T9--1	chr11:119182475	C	NA	60	0	60	35.717	7.295	0	0	0	54	0	MCAM	intronic	NA
RCC_T9--2	chr11:119182475	C	T	121	0.231	92	36.587	5.056	28	35.750	8.984	88	26	MCAM	intronic	NA
RCC_T9--3	chr11:119182475	C	NA	78	0	78	37.667	3.086	0	0	0	76	0	MCAM	intronic	NA
RCC_T9--4	chr11:119182475	C	T	81	0.222	63	34.698	7.657	18	36.111	4.600	55	16	MCAM	intronic	NA
RCC_T9--5	chr11:119182475	C	T	52	0.173	43	36.116	4.101	9	38.333	2.872	40	9	MCAM	intronic	NA
RCC_T9--GL	chr11:119182475	C	NA	62	0	62	35.113	7.512	0	0	0	53	0	MCAM	intronic	NA
RCC_T9--1	chr1:117076125	G	NA	41	0	41	37.317	6.314	0	0	0	39	0	CD58	intronic	NA
RCC_T9--2	chr1:117076125	G	NA	44	0	44	38.841	2.972	0	0	0	43	0	CD58	intronic	NA
RCC_T9--3	chr1:117076125	G	A	57	0.175	47	38.830	2.210	10	38.000	3.771	47	9	CD58	intronic	NA
RCC_T9--4	chr1:117076125	G	NA	37	0	36	38.250	3.835	0	0	0	34	0	CD58	intronic	NA
RCC_T9--5	chr1:117076125	G	NA	38	0	38	36.842	8.821	0	0	0	35	0	CD58	intronic	NA
RCC_T9--GL	chr1:117076125	G	NA	44	0	44	38.205	2.690	0	0	0	44	0	CD58	intronic	NA
RCC_T9--1	chr11:31531452	G	A	101	0.327	68	34.588	6.477	33	35.333	5.060	61	30	ELP4	exonic	nonsynonymous_SNV
RCC_T9--2	chr11:31531452	G	A	112	0.205	88	35.273	4.868	23	36.391	2.840	85	23	ELP4	exonic	nonsynonymous_SNV
RCC_T9--3	chr11:31531452	G	A	83	0.289	59	36.254	5.482	24	36.625	2.975	57	24	ELP4	exonic	nonsynonymous_SNV
RCC_T9--4	chr11:31531452	G	A	98	0.224	76	34.434	7.287	22	34.227	7.678	70	21	ELP4	exonic	nonsynonymous_SNV
RCC_T9--5	chr11:31531452	G	A	61	0.230	46	31.935	9.806	14	35.000	4.540	36	13	ELP4	exonic	nonsynonymous_SNV
RCC_T9--GL	chr11:31531452	G	NA	77	0	76	32.724	8.920	0	0	0	63	0	ELP4	exonic	nonsynonymous_SNV
RCC_T9--1	chr1:145587775	T	A	98	0.316	67	36.522	7.443	31	35.129	7.928	62	27	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:145587775	T	A	175	0.280	124	36.081	6.658	49	37.551	3.748	114	47	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:145587775	T	A	106	0.245	80	35.163	9.534	26	33.385	11.416	70	21	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:145587775	T	A	109	0.147	92	36.783	6.157	16	38.375	3.575	89	15	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:145587775	T	A	105	0.257	78	34.936	9.449	27	35.741	5.163	71	23	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:145587775	T	NA	97	0	97	34.608	8.838	0	0	0	85	0	NUDT17	exonic	nonsynonymous_SNV
RCC_T9--1	chr11:46399818	G	T	84	0.298	57	35.228	8.111	25	34.400	6.946	52	23	DGKZ	intronic	NA
RCC_T9--2	chr11:46399818	G	T	112	0.152	95	36.211	6.383	17	33.941	12.270	91	15	DGKZ	intronic	NA
RCC_T9--3	chr11:46399818	G	T	84	0.310	58	36.052	6.637	26	37.423	3.535	52	25	DGKZ	intronic	NA
RCC_T9--4	chr11:46399818	G	T	76	0.171	63	37.111	3.122	13	34.077	10.324	63	11	DGKZ	intronic	NA
RCC_T9--5	chr11:46399818	G	T	52	0.096	46	35.457	7.429	5	28.400	15.274	41	4	DGKZ	intronic	NA
RCC_T9--GL	chr11:46399818	G	NA	50	0	50	34.940	7.531	0	0	0	48	0	DGKZ	intronic	NA
RCC_T9--1	chr1:152281821	C	T	67	0.343	43	37.047	4.152	23	33.696	9.300	41	18	FLG	exonic	synonymous_SNV
RCC_T9--2	chr1:152281821	C	NA	78	0	78	37.321	5.751	0	0	0	74	0	FLG	exonic	synonymous_SNV
RCC_T9--3	chr1:152281821	C	NA	55	0	55	37.018	6.308	0	0	0	51	0	FLG	exonic	synonymous_SNV
RCC_T9--4	chr1:152281821	C	NA	51	0	51	37.490	5.493	0	0	0	48	0	FLG	exonic	synonymous_SNV
RCC_T9--5	chr1:152281821	C	NA	47	0	46	35.000	9.818	0	0	0	41	0	FLG	exonic	synonymous_SNV
RCC_T9--GL	chr1:152281821	C	NA	37	0	37	36.946	3.887	0	0	0	36	0	FLG	exonic	synonymous_SNV
RCC_T9--1	chr1:153933185	G	NA	103	0	103	37.408	4.162	0	0	0	97	0	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:153933185	G	NA	165	0	165	37.261	5.928	0	0	0	157	0	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:153933185	G	NA	96	0	96	38.406	3.641	0	0	0	92	0	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:153933185	G	NA	115	0	115	37.635	5.146	0	0	0	111	0	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:153933185	G	C	90	0.167	75	35.507	7.807	15	37.000	2.726	69	15	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:153933185	G	NA	69	0	68	37.647	5.477	0	0	0	65	0	SLC39A1	exonic	nonsynonymous_SNV
RCC_T9--1	chr1:157490229	C	NA	206	0	206	34.636	9.074	0	0	0	184	0	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:157490229	C	T	307	0.166	254	35.417	6.240	51	37.490	3.101	237	51	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:157490229	C	T	190	0.005	189	36.138	5.036	1	34.000	0.000	179	1	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:157490229	C	T	161	0.230	124	36.137	4.903	37	35.432	6.623	119	35	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:157490229	C	T	161	0.186	130	34.515	7.353	30	33.033	9.651	119	26	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:157490229	C	NA	142	0	142	34.204	7.471	0	0	0	124	0	FCRL5	exonic	nonsynonymous_SNV
RCC_T9--1	chr1:159684270	C	NA	246	0	245	34.449	8.422	0	0	0	214	0	CRP	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:159684270	C	NA	328	0	323	35.687	7.066	0	0	0	290	0	CRP	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:159684270	C	A	173	0.202	137	37.219	5.453	35	35.686	6.880	132	32	CRP	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:159684270	C	NA	183	0	183	34.612	8.776	0	0	0	161	0	CRP	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:159684270	C	NA	214	0	212	32.410	9.498	0	0	0	176	0	CRP	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:159684270	C	NA	165	0	163	32.632	10.855	0	0	0	137	0	CRP	exonic	nonsynonymous_SNV
RCC_T9--1	chr11:66357916	T	NA	105	0	104	35.529	6.487	0	0	0	96	0	CCDC87	UTR3	NA
RCC_T9--2	chr11:66357916	T	C	122	0.213	96	36.833	4.770	26	34.577	7.463	94	24	CCDC87	UTR3	NA
RCC_T9--3	chr11:66357916	T	NA	92	0	92	34.957	10.091	0	0	0	82	0	CCDC87	UTR3	NA
RCC_T9--4	chr11:66357916	T	C	100	0.100	90	36.533	3.567	10	37.600	2.951	86	10	CCDC87	UTR3	NA
RCC_T9--5	chr11:66357916	T	C	63	0.111	55	34.709	8.958	7	37.143	3.078	49	7	CCDC87	UTR3	NA
RCC_T9--GL	chr11:66357916	T	NA	59	0	57	33.772	8.487	0	0	0	46	0	CCDC87	UTR3	NA
RCC_T9--1	chr12:10149849	C	NA	160	0	160	38.513	4.151	0	0	0	156	0	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--2	chr12:10149849	C	T	240	0.208	189	38.492	2.746	50	38.240	3.041	188	49	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--3	chr12:10149849	C	NA	195	0	195	38.338	3.518	0	0	0	191	0	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--4	chr12:10149849	C	T	112	0.054	106	38.453	4.223	6	39.333	1.966	103	6	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--5	chr12:10149849	C	NA	168	0	167	37.731	4.825	0	0	0	163	0	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--GL	chr12:10149849	C	NA	137	0	136	37.875	3.121	0	0	0	133	0	CLEC1B	exonic	nonsynonymous_SNV
RCC_T9--1	chr12:123463354	C	T	74	0.338	49	31.592	10.300	25	30.800	8.292	37	18	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--2	chr12:123463354	C	T	91	0.253	67	34.299	6.504	23	29.522	9.332	60	15	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--3	chr12:123463354	C	T	81	0.432	45	35.244	6.610	35	33.143	7.187	41	29	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--4	chr12:123463354	C	T	84	0.190	67	34.448	6.903	16	28.562	12.187	58	13	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--5	chr12:123463354	C	T	63	0.206	48	30.292	12.044	13	28.769	7.758	34	8	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr12:123463354	C	NA	50	0	50	30.680	10.161	0	0	0	39	0	OGFOD2	exonic	nonsynonymous_SNV
RCC_T9--1	chr12:19467605	A	NA	72	0	72	38.417	3.015	0	0	0	71	0	PLEKHA5	intronic	NA
RCC_T9--2	chr12:19467605	A	G	60	0.100	54	37.704	7.462	6	37.000	2.757	52	6	PLEKHA5	intronic	NA
RCC_T9--3	chr12:19467605	A	NA	77	0	77	39.325	2.143	0	0	0	77	0	PLEKHA5	intronic	NA
RCC_T9--4	chr12:19467605	A	G	72	0.181	58	38.776	3.685	13	39.615	2.142	57	13	PLEKHA5	intronic	NA
RCC_T9--5	chr12:19467605	A	G	52	0.154	44	38.841	2.964	8	39.875	2.031	44	8	PLEKHA5	intronic	NA
RCC_T9--GL	chr12:19467605	A	NA	46	0	46	39.109	2.938	0	0	0	45	0	PLEKHA5	intronic	NA
RCC_T9--1	chr1:226032233	A	G	175	0.337	116	35.310	8.422	59	36.339	7.312	107	55	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:226032233	A	G	228	0.175	187	36.807	4.499	40	34.300	8.979	181	36	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:226032233	A	G	154	0.292	109	36.716	5.632	45	37.244	3.524	106	43	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:226032233	A	G	114	0.246	85	36.294	7.067	28	37.143	3.124	81	28	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:226032233	A	G	92	0.174	76	35.592	7.272	16	34.750	5.000	70	15	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:226032233	A	NA	111	0	111	35.054	6.889	0	0	0	100	0	EPHX1	exonic	nonsynonymous_SNV
RCC_T9--1	chr1:227203644	C	G	270	0.315	185	38.297	4.469	85	37.953	3.732	178	83	CDC42BPA	intronic	NA
RCC_T9--2	chr1:227203644	C	NA	304	0	304	38.359	4.555	0	0	0	300	0	CDC42BPA	intronic	NA
RCC_T9--3	chr1:227203644	C	NA	226	0	226	38.867	4.407	0	0	0	220	0	CDC42BPA	intronic	NA
RCC_T9--4	chr1:227203644	C	NA	175	0	175	38.869	3.378	0	0	0	172	0	CDC42BPA	intronic	NA
RCC_T9--5	chr1:227203644	C	NA	179	0	179	38.838	3.290	0	0	0	175	0	CDC42BPA	intronic	NA
RCC_T9--GL	chr1:227203644	C	NA	202	0	200	38.170	5.204	0	0	0	194	0	CDC42BPA	intronic	NA
RCC_T9--1	chr1:241946593	C	T	74	0.297	52	37.615	6.023	22	37.273	8.131	50	21	WDR64	exonic	nonsynonymous_SNV
RCC_T9--2	chr1:241946593	C	T	92	0.152	78	37.782	6.206	14	38.500	2.534	75	14	WDR64	exonic	nonsynonymous_SNV
RCC_T9--3	chr1:241946593	C	NA	52	0	52	37.269	6.069	0	0	0	50	0	WDR64	exonic	nonsynonymous_SNV
RCC_T9--4	chr1:241946593	C	T	50	0.260	37	38.784	3.092	13	38.846	2.968	36	13	WDR64	exonic	nonsynonymous_SNV
RCC_T9--5	chr1:241946593	C	T	79	0.215	61	38.033	4.025	17	37.882	4.314	58	16	WDR64	exonic	nonsynonymous_SNV
RCC_T9--GL	chr1:241946593	C	NA	78	0	78	37.821	3.001	0	0	0	77	0	WDR64	exonic	nonsynonymous_SNV
RCC_T9--1	chr12:5721993	A	T	206	0.267	151	35.351	7.178	55	34.655	8.984	136	47	ANO2	intronic	NA
RCC_T9--2	chr12:5721993	A	T	175	0.189	142	35.986	6.098	33	32.727	10.619	133	28	ANO2	intronic	NA
RCC_T9--3	chr12:5721993	A	T	189	0.243	143	36.497	5.814	46	35.457	5.991	136	43	ANO2	intronic	NA
RCC_T9--4	chr12:5721993	A	T	110	0.155	93	36.978	3.569	17	36.235	4.176	92	16	ANO2	intronic	NA
RCC_T9--5	chr12:5721993	A	T	121	0.132	105	34.962	6.751	16	32.750	8.714	94	14	ANO2	intronic	NA
RCC_T9--GL	chr12:5721993	A	NA	70	0	70	36.057	3.575	0	0	0	65	0	ANO2	intronic	NA
RCC_T9--1	chr12:78400382	C	NA	324	0	322	36.575	5.417	0	0	0	308	0	NAV3	exonic	nonsynonymous_SNV
RCC_T9--2	chr12:78400382	C	NA	264	0	262	36.607	4.932	0	0	0	253	0	NAV3	exonic	nonsynonymous_SNV
RCC_T9--3	chr12:78400382	C	G	316	0.316	216	36.065	6.712	100	37.220	3.858	201	97	NAV3	exonic	nonsynonymous_SNV
RCC_T9--4	chr12:78400382	C	NA	210	0	210	36.538	4.852	0	0	0	203	0	NAV3	exonic	nonsynonymous_SNV
RCC_T9--5	chr12:78400382	C	NA	218	0	217	35.097	7.841	0	0	0	199	0	NAV3	exonic	nonsynonymous_SNV
RCC_T9--GL	chr12:78400382	C	NA	205	0	204	35.368	6.974	0	0	0	187	0	NAV3	exonic	nonsynonymous_SNV
RCC_T9--1	chr12:8196313	T	G	210	0.238	160	37.737	4.477	50	37.320	3.925	156	48	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--2	chr12:8196313	T	G	174	0.075	160	37.675	5.016	13	38.154	2.853	156	13	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--3	chr12:8196313	T	G	171	0.234	131	36.962	6.248	40	37.900	3.608	123	39	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--4	chr12:8196313	T	G	115	0.157	97	36.835	5.109	18	38.167	3.417	93	18	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--5	chr12:8196313	T	G	120	0.242	91	37.560	3.679	29	36.759	4.146	87	27	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr12:8196313	T	NA	178	0	177	36.040	7.449	0	0	0	165	0	FOXJ2	exonic	nonsynonymous_SNV
RCC_T9--1	chr13:37607740	A	T	113	0.354	73	36.055	8.657	40	38.500	3.700	65	39	SUPT20H	intronic	NA
RCC_T9--2	chr13:37607740	A	T	105	0.162	88	38.318	6.113	17	38.412	4.302	85	16	SUPT20H	intronic	NA
RCC_T9--3	chr13:37607740	A	T	87	0.230	67	38.642	3.278	20	38.250	3.810	64	19	SUPT20H	intronic	NA
RCC_T9--4	chr13:37607740	A	NA	78	0	78	38.346	5.014	0	0	0	76	0	SUPT20H	intronic	NA
RCC_T9--5	chr13:37607740	A	T	81	0.136	70	36.471	7.714	11	37.727	3.409	64	11	SUPT20H	intronic	NA
RCC_T9--GL	chr13:37607740	A	NA	106	0	105	37.686	5.577	0	0	0	101	0	SUPT20H	intronic	NA
RCC_T9--1	chr13:86369017	C	NA	195	0	195	36.703	6.198	0	0	0	183	0	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--2	chr13:86369017	C	NA	172	0	171	36.825	5.778	0	0	0	166	0	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--3	chr13:86369017	C	T	154	0.279	111	37.766	4.951	43	37.326	5.955	106	42	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--4	chr13:86369017	C	NA	130	0	128	34.891	8.522	0	0	0	117	0	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--5	chr13:86369017	C	NA	126	0	124	36.306	5.066	0	0	0	117	0	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--GL	chr13:86369017	C	NA	130	0	129	36.163	6.464	0	0	0	123	0	SLITRK6	exonic	nonsynonymous_SNV
RCC_T9--1	chr14:102028031	T	NA	251	0	247	32.656	8.656	0	0	0	201	0	DIO3	exonic	unknown
RCC_T9--2	chr14:102028031	T	NA	330	0	329	33.532	7.820	0	0	0	277	0	DIO3	exonic	unknown
RCC_T9--3	chr14:102028031	T	NA	291	0	289	34.481	7.345	0	0	0	258	0	DIO3	exonic	unknown
RCC_T9--4	chr14:102028031	T	NA	270	0	267	33.007	8.720	0	0	0	227	0	DIO3	exonic	unknown
RCC_T9--5	chr14:102028031	T	C	148	0.162	122	31.648	8.728	24	31.417	10.902	98	18	DIO3	exonic	unknown
RCC_T9--GL	chr14:102028031	T	NA	206	0	204	30.074	10.093	0	0	0	147	0	DIO3	exonic	unknown
RCC_T9--1	chr14:24879270	G	NA	194	0	193	34.078	7.344	0	0	0	168	0	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--2	chr14:24879270	G	A	265	0.219	205	34.932	6.576	58	33.655	7.146	191	51	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--3	chr14:24879270	G	A	243	0.004	242	35.764	6.008	1	38.000	0.000	227	1	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--4	chr14:24879270	G	A	200	0.220	155	35.503	5.078	44	30.932	10.395	149	34	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--5	chr14:24879270	G	A	157	0.287	112	33.652	7.735	45	34.733	4.604	98	43	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--GL	chr14:24879270	G	NA	118	0	117	33.803	8.432	0	0	0	104	0	NYNRIN	exonic	nonsynonymous_SNV
RCC_T9--1	chr1:45806670	C	T	97	0.330	64	35.891	6.141	32	36.031	7.377	55	30	TOE1	intronic	NA
RCC_T9--2	chr1:45806670	C	T	95	0.137	82	37.195	6.121	13	37.769	2.833	79	13	TOE1	intronic	NA
RCC_T9--3	chr1:45806670	C	T	97	0.381	60	37.233	7.036	37	36.135	6.338	58	36	TOE1	intronic	NA
RCC_T9--4	chr1:45806670	C	T	62	0.323	42	36.905	3.348	20	36.250	3.851	42	19	TOE1	intronic	NA
RCC_T9--5	chr1:45806670	C	T	50	0.280	36	35.222	10.483	14	38.286	6.378	33	13	TOE1	intronic	NA
RCC_T9--GL	chr1:45806670	C	NA	76	0	76	35.539	7.827	0	0	0	70	0	TOE1	intronic	NA
RCC_T9--1	chr14:67555711	C	NA	189	0	188	36.670	6.720	0	0	0	177	0	GPHN	exonic	stopgain_SNV
RCC_T9--2	chr14:67555711	C	NA	169	0	168	36.220	7.150	0	0	0	157	0	GPHN	exonic	stopgain_SNV
RCC_T9--3	chr14:67555711	C	T	175	0.006	174	37.897	4.141	1	35.000	0.000	170	1	GPHN	exonic	stopgain_SNV
RCC_T9--4	chr14:67555711	C	T	137	0.234	105	36.971	5.199	32	34.719	5.920	101	30	GPHN	exonic	stopgain_SNV
RCC_T9--5	chr14:67555711	C	NA	127	0	127	37.197	4.127	0	0	0	124	0	GPHN	exonic	stopgain_SNV
RCC_T9--GL	chr14:67555711	C	NA	166	0	165	36.558	5.280	0	0	0	158	0	GPHN	exonic	stopgain_SNV
RCC_T9--1	chr14:78235898	T	C	134	0.269	98	35.653	9.160	36	36.528	6.531	89	35	C14orf178	exonic	synonymous_SNV
RCC_T9--2	chr14:78235898	T	C	137	0.299	95	36.947	4.080	41	37.463	3.139	94	40	C14orf178	exonic	synonymous_SNV
RCC_T9--3	chr14:78235898	T	C	114	0.333	76	37.329	4.054	38	38.000	4.178	73	36	C14orf178	exonic	synonymous_SNV
RCC_T9--4	chr14:78235898	T	C	79	0.291	55	36.636	6.213	23	37.783	3.074	50	23	C14orf178	exonic	synonymous_SNV
RCC_T9--5	chr14:78235898	T	C	76	0.250	57	37.175	4.504	19	35.737	8.698	55	18	C14orf178	exonic	synonymous_SNV
RCC_T9--GL	chr14:78235898	T	NA	131	0	131	35.687	6.928	0	0	0	121	0	C14orf178	exonic	synonymous_SNV
RCC_T9--1	chr14:90755267	A	G	195	0.359	123	34.195	10.098	70	35.314	9.112	107	64	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--2	chr14:90755267	A	NA	173	0	171	36.591	4.793	0	0	0	164	0	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--3	chr14:90755267	A	G	158	0.278	114	36.281	6.133	44	37.727	3.121	102	43	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--4	chr14:90755267	A	NA	106	0	104	36.529	5.535	0	0	0	97	0	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--5	chr14:90755267	A	NA	97	0	94	35.777	6.955	0	0	0	88	0	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr14:90755267	A	NA	142	0	141	35.241	5.970	0	0	0	126	0	NRDE2	exonic	nonsynonymous_SNV
RCC_T9--1	chr15:23685081	C	T	300	0.333	198	31.934	11.450	100	33.850	9.504	152	79	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--2	chr15:23685081	C	NA	141	0	138	31.442	10.541	0	0	0	105	0	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--3	chr15:23685081	C	T	263	0.163	220	34.218	9.383	43	35.186	6.933	189	37	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--4	chr15:23685081	C	NA	122	0	122	33.393	8.102	0	0	0	107	0	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--5	chr15:23685081	C	NA	89	0	89	29.989	11.492	0	0	0	64	0	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--GL	chr15:23685081	C	NA	78	0	75	32.147	8.706	0	0	0	60	0	GOLGA8S(dist=71610),MIR4508(dist=122128)	intergenic	NA
RCC_T9--1	chr1:53684055	G	NA	99	0	99	36.404	7.467	0	0	0	89	0	C1orf123	intronic	NA
RCC_T9--2	chr1:53684055	G	NA	116	0	116	36.612	6.556	0	0	0	109	0	C1orf123	intronic	NA
RCC_T9--3	chr1:53684055	G	A	101	0.297	71	37.718	3.689	30	36.533	8.161	68	28	C1orf123	intronic	NA
RCC_T9--4	chr1:53684055	G	NA	86	0	86	37.209	5.611	0	0	0	83	0	C1orf123	intronic	NA
RCC_T9--5	chr1:53684055	G	NA	66	0	65	36.154	7.791	0	0	0	61	0	C1orf123	intronic	NA
RCC_T9--GL	chr1:53684055	G	NA	64	0	64	35.438	6.192	0	0	0	58	0	C1orf123	intronic	NA
RCC_T9--1	chr15:55722944	T	G	154	0.403	92	37.989	4.118	62	38.065	5.108	89	61	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--2	chr15:55722944	T	NA	211	0	211	37.986	4.472	0	0	0	206	0	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--3	chr15:55722944	T	G	197	0.294	139	37.914	4.873	58	38.931	2.159	130	58	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--4	chr15:55722944	T	G	172	0.145	146	38.041	3.539	25	38.880	3.539	141	24	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--5	chr15:55722944	T	NA	168	0	168	37.875	4.552	0	0	0	163	0	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr15:55722944	T	NA	217	0	217	38.023	4.068	0	0	0	210	0	DYX1C1	exonic	nonsynonymous_SNV
RCC_T9--1	chr16:2350105	C	T	238	0.290	169	34.911	7.744	69	35.304	8.213	152	64	ABCA3	exonic	synonymous_SNV
RCC_T9--2	chr16:2350105	C	T	219	0.123	191	35.372	6.365	27	36.630	4.171	179	25	ABCA3	exonic	synonymous_SNV
RCC_T9--3	chr16:2350105	C	T	240	0.296	169	35.787	7.662	71	36.563	5.269	158	69	ABCA3	exonic	synonymous_SNV
RCC_T9--4	chr16:2350105	C	T	177	0.249	133	35.707	4.807	44	34.591	8.630	125	39	ABCA3	exonic	synonymous_SNV
RCC_T9--5	chr16:2350105	C	T	192	0.328	128	34.414	7.962	63	35.492	6.355	117	56	ABCA3	exonic	synonymous_SNV
RCC_T9--GL	chr16:2350105	C	NA	183	0	183	34.934	4.652	0	0	0	163	0	ABCA3	exonic	synonymous_SNV
RCC_T9--1	chr16:8952381	A	NA	65	0	63	34.873	8.562	0	0	0	54	0	CARHSP1	intronic	NA
RCC_T9--2	chr16:8952381	A	NA	91	0	91	35.857	8.096	0	0	0	85	0	CARHSP1	intronic	NA
RCC_T9--3	chr16:8952381	A	NA	73	0	72	36.167	7.039	0	0	0	66	0	CARHSP1	intronic	NA
RCC_T9--4	chr16:8952381	A	G	48	0.188	39	36.615	6.912	9	38.444	2.920	36	9	CARHSP1	intronic	NA
RCC_T9--5	chr16:8952381	A	NA	40	0	40	34.600	9.245	0	0	0	35	0	CARHSP1	intronic	NA
RCC_T9--GL	chr16:8952381	A	NA	37	0	37	34.676	6.984	0	0	0	33	0	CARHSP1	intronic	NA
RCC_T9--1	chr17:12920380	T	C	185	0.351	120	36.942	5.407	65	35.569	7.192	116	58	ELAC2	intronic	NA
RCC_T9--2	chr17:12920380	T	C	207	0.106	185	37.016	4.479	22	38.455	3.188	181	22	ELAC2	intronic	NA
RCC_T9--3	chr17:12920380	T	C	201	0.249	151	36.954	6.072	50	36.100	5.919	144	48	ELAC2	intronic	NA
RCC_T9--4	chr17:12920380	T	C	155	0.097	140	36.886	5.207	15	35.867	6.334	137	14	ELAC2	intronic	NA
RCC_T9--5	chr17:12920380	T	C	160	0.113	140	35.400	7.324	18	32.500	9.654	127	15	ELAC2	intronic	NA
RCC_T9--GL	chr17:12920380	T	NA	173	0	172	36.238	5.869	0	0	0	163	0	ELAC2	intronic	NA
RCC_T9--1	chr17:26687564	G	NA	84	0	83	36.651	6.678	0	0	0	78	0	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--2	chr17:26687564	G	NA	76	0	76	37.987	3.646	0	0	0	74	0	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--3	chr17:26687564	G	C	68	0.309	47	38.064	3.559	21	38.238	3.208	45	20	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--4	chr17:26687564	G	NA	48	0	48	37.646	5.995	0	0	0	47	0	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--5	chr17:26687564	G	NA	54	0	54	37.370	3.599	0	0	0	52	0	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--GL	chr17:26687564	G	NA	76	0	75	37.427	4.054	0	0	0	73	0	TMEM199	exonic	nonsynonymous_SNV
RCC_T9--1	chr17:40817604	T	NA	285	0	281	35.235	7.425	0	0	0	255	0	TUBG2	intronic	NA
RCC_T9--2	chr17:40817604	T	G	316	0.079	291	36.182	7.013	25	35.280	8.304	272	22	TUBG2	intronic	NA
RCC_T9--3	chr17:40817604	T	NA	316	0	316	36.953	5.373	0	0	0	301	0	TUBG2	intronic	NA
RCC_T9--4	chr17:40817604	T	G	264	0.269	191	36.162	7.033	71	36.535	5.299	181	69	TUBG2	intronic	NA
RCC_T9--5	chr17:40817604	T	G	215	0.228	164	34.841	6.972	49	33.878	9.087	144	44	TUBG2	intronic	NA
RCC_T9--GL	chr17:40817604	T	NA	159	0	156	34.513	7.643	0	0	0	137	0	TUBG2	intronic	NA
RCC_T9--1	chr17:45376749	G	A	171	0.374	106	33.236	9.785	64	34.531	6.619	90	57	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--2	chr17:45376749	G	A	194	0.149	165	35.376	6.253	29	33.069	10.980	155	26	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--3	chr17:45376749	G	A	202	0.351	130	35.600	6.747	71	34.887	7.050	124	64	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--4	chr17:45376749	G	A	153	0.176	126	35.913	5.203	27	36.704	4.159	118	25	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--5	chr17:45376749	G	A	124	0.089	113	33.956	7.999	11	36.273	4.361	98	10	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--GL	chr17:45376749	G	NA	129	0	128	32.188	10.112	0	0	0	105	0	ITGB3	exonic	nonsynonymous_SNV
RCC_T9--1	chr17:4544984	G	A	39	0.103	35	35.943	6.979	4	35.000	1.414	32	4	ALOX15	upstream	NA
RCC_T9--2	chr17:4544984	G	A	44	0.159	37	36.703	2.747	7	34.429	2.370	37	7	ALOX15	upstream	NA
RCC_T9--3	chr17:4544984	G	A	44	0.068	41	37.707	2.639	3	35.333	1.528	41	3	ALOX15	upstream	NA
RCC_T9--4	chr17:4544984	G	A	36	0.139	31	35.903	5.516	5	28.400	14.809	28	4	ALOX15	upstream	NA
RCC_T9--5	chr17:4544984	G	A	28	0.071	26	34.923	8.119	2	34.000	0.000	23	2	ALOX15	upstream	NA
RCC_T9--GL	chr17:4544984	G	NA	36	0	36	34.444	8.094	0	0	0	30	0	ALOX15	upstream	NA
RCC_T9--1	chr17:67264082	A	NA	71	0	71	37.549	5.201	0	0	0	68	0	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--2	chr17:67264082	A	C	144	0.083	130	37.085	5.265	12	39.667	1.497	123	12	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--3	chr17:67264082	A	NA	110	0	110	36.800	5.727	0	0	0	103	0	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--4	chr17:67264082	A	C	123	0.211	95	36.242	5.313	26	39.269	1.888	87	26	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--5	chr17:67264082	A	C	77	0.247	58	37.931	4.881	19	38.579	3.288	56	19	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--GL	chr17:67264082	A	NA	88	0	88	37.761	4.006	0	0	0	85	0	ABCA5(NM_018672:exon23:c.3144+2T>G,NM_172232:exon24:c.3144+2T>G)	splicing	NA
RCC_T9--1	chr17:76989934	C	NA	83	0	81	34.432	7.675	0	0	0	74	0	CANT1	exonic	nonsynonymous_SNV
RCC_T9--2	chr17:76989934	C	NA	107	0	104	34.779	5.379	0	0	0	93	0	CANT1	exonic	nonsynonymous_SNV
RCC_T9--3	chr17:76989934	C	NA	85	0	85	34.341	7.057	0	0	0	72	0	CANT1	exonic	nonsynonymous_SNV
RCC_T9--4	chr17:76989934	C	NA	121	0	119	34.588	7.063	0	0	0	106	0	CANT1	exonic	nonsynonymous_SNV
RCC_T9--5	chr17:76989934	C	T	74	0.230	55	35.145	5.592	17	30.000	10.863	52	12	CANT1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr17:76989934	C	NA	48	0	47	30.000	11.061	0	0	0	36	0	CANT1	exonic	nonsynonymous_SNV
RCC_T9--1	chr17:78221927	A	G	100	0.210	79	35.430	5.984	21	35.095	8.148	71	20	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--2	chr17:78221927	A	NA	173	0	172	34.831	7.327	0	0	0	158	0	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--3	chr17:78221927	A	NA	119	0	119	35.630	5.610	0	0	0	106	0	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--4	chr17:78221927	A	NA	119	0	118	37.636	3.697	0	0	0	116	0	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--5	chr17:78221927	A	NA	106	0	105	34.038	8.904	0	0	0	93	0	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--GL	chr17:78221927	A	NA	87	0	87	34.598	7.557	0	0	0	78	0	SLC26A11(NM_001166347:exon14:c.1295-2A>G,NM_001166349:exon13:c.1295-2A>G,NM_001166348:exon13:c.1295-2A>G,NM_173626:exon14:c.1295-2A>G)	splicing	NA
RCC_T9--1	chr1:78180220	G	T	63	0.317	42	37.024	4.308	20	31.600	9.127	38	16	USP33	intronic	NA
RCC_T9--2	chr1:78180220	G	NA	61	0	61	37.443	5.536	0	0	0	60	0	USP33	intronic	NA
RCC_T9--3	chr1:78180220	G	NA	66	0	66	37.485	7.227	0	0	0	63	0	USP33	intronic	NA
RCC_T9--4	chr1:78180220	G	NA	46	0	46	37.543	3.594	0	0	0	44	0	USP33	intronic	NA
RCC_T9--5	chr1:78180220	G	NA	62	0	62	36.887	6.030	0	0	0	58	0	USP33	intronic	NA
RCC_T9--GL	chr1:78180220	G	NA	54	0	54	38.426	2.220	0	0	0	54	0	USP33	intronic	NA
RCC_T9--1	chr1:79095600	G	NA	87	0	86	37.419	7.128	0	0	0	82	0	IFI44L	exonic	synonymous_SNV
RCC_T9--2	chr1:79095600	G	NA	135	0	134	37.679	4.492	0	0	0	130	0	IFI44L	exonic	synonymous_SNV
RCC_T9--3	chr1:79095600	G	NA	137	0	137	37.993	4.361	0	0	0	134	0	IFI44L	exonic	synonymous_SNV
RCC_T9--4	chr1:79095600	G	T	126	0.135	107	37.822	4.236	17	35.294	8.716	104	16	IFI44L	exonic	synonymous_SNV
RCC_T9--5	chr1:79095600	G	T	95	0.168	79	38.051	3.980	16	33.375	10.032	77	13	IFI44L	exonic	synonymous_SNV
RCC_T9--GL	chr1:79095600	G	NA	92	0	91	37.198	4.766	0	0	0	84	0	IFI44L	exonic	synonymous_SNV
RCC_T9--1	chr18:2940747	A	NA	64	0	64	36.766	4.464	0	0	0	61	0	LPIN2	intronic	NA
RCC_T9--2	chr18:2940747	A	C	49	0.143	42	35.929	7.607	7	36.429	2.299	40	7	LPIN2	intronic	NA
RCC_T9--3	chr18:2940747	A	NA	30	0	30	37.967	2.356	0	0	0	30	0	LPIN2	intronic	NA
RCC_T9--4	chr18:2940747	A	NA	37	0	37	37.649	3.011	0	0	0	36	0	LPIN2	intronic	NA
RCC_T9--5	chr18:2940747	A	NA	27	0	27	34.593	9.865	0	0	0	23	0	LPIN2	intronic	NA
RCC_T9--GL	chr18:2940747	A	NA	40	0	40	36.100	3.754	0	0	0	38	0	LPIN2	intronic	NA
RCC_T9--1	chr1:85097429	T	A	86	0.279	62	36.661	7.468	24	37.167	3.088	57	23	C1orf180	ncRNA_exonic	NA
RCC_T9--2	chr1:85097429	T	A	46	0.196	37	36.838	6.731	9	33.889	4.910	36	7	C1orf180	ncRNA_exonic	NA
RCC_T9--3	chr1:85097429	T	A	38	0.342	25	37.360	7.884	13	37.846	2.512	24	13	C1orf180	ncRNA_exonic	NA
RCC_T9--4	chr1:85097429	T	A	41	0.146	35	37.371	6.796	6	37.000	6.899	34	5	C1orf180	ncRNA_exonic	NA
RCC_T9--5	chr1:85097429	T	A	51	0.294	36	35.611	9.308	15	35.267	5.637	31	13	C1orf180	ncRNA_exonic	NA
RCC_T9--GL	chr1:85097429	T	NA	48	0	48	37.938	3.271	0	0	0	47	0	C1orf180	ncRNA_exonic	NA
RCC_T9--1	chr18:67742831	T	NA	46	0	46	36.891	4.458	0	0	0	45	0	RTTN	intronic	NA
RCC_T9--2	chr18:67742831	T	NA	54	0	54	37.778	3.214	0	0	0	54	0	RTTN	intronic	NA
RCC_T9--3	chr18:67742831	T	NA	31	0	31	38.903	2.103	0	0	0	31	0	RTTN	intronic	NA
RCC_T9--4	chr18:67742831	T	NA	40	0	40	37.900	4.584	0	0	0	38	0	RTTN	intronic	NA
RCC_T9--5	chr18:67742831	T	A	33	0.182	26	35.500	8.382	6	37.667	6.282	23	5	RTTN	intronic	NA
RCC_T9--GL	chr18:67742831	T	NA	49	0	49	36.857	3.279	0	0	0	47	0	RTTN	intronic	NA
RCC_T9--1	chr18:72180824	T	NA	41	0	40	34.350	6.889	0	0	0	36	0	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--2	chr18:72180824	T	NA	77	0	77	34.338	8.117	0	0	0	73	0	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--3	chr18:72180824	T	NA	50	0	50	35.260	7.553	0	0	0	44	0	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--4	chr18:72180824	T	C	63	0.175	52	33.558	9.590	11	35.818	3.250	45	11	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--5	chr18:72180824	T	NA	52	0	52	34.327	7.017	0	0	0	46	0	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr18:72180824	T	NA	42	0	42	32.619	10.741	0	0	0	36	0	CNDP2	exonic	nonsynonymous_SNV
RCC_T9--1	chr18:8706350	G	C	83	0.349	54	32.556	9.177	29	30.586	12.240	42	24	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--2	chr18:8706350	G	C	256	0.168	212	33.330	7.655	43	34.860	6.255	181	40	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--3	chr18:8706350	G	C	173	0.358	111	33.919	7.170	62	31.903	10.570	94	51	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--4	chr18:8706350	G	C	194	0.134	168	34.054	6.664	26	32.731	11.337	153	23	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--5	chr18:8706350	G	C	114	0.132	98	29.459	10.762	15	26.133	13.174	68	10	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--GL	chr18:8706350	G	NA	76	0	76	32.211	7.567	0	0	0	62	0	RAB12(dist=66970),SOGA2(dist=11019)	intergenic	NA
RCC_T9--1	chr19:11132513	C	T	65	0.031	63	33.921	8.610	2	30.000	7.071	52	1	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--2	chr19:11132513	C	NA	96	0	96	35.583	5.028	0	0	0	89	0	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--3	chr19:11132513	C	T	64	0.266	47	35.809	6.092	17	35.765	4.994	44	15	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--4	chr19:11132513	C	NA	63	0	63	36.190	5.364	0	0	0	62	0	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--5	chr19:11132513	C	NA	46	0	46	34.630	7.895	0	0	0	42	0	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--GL	chr19:11132513	C	NA	42	0	42	36.048	4.072	0	0	0	40	0	SMARCA4	exonic	nonsynonymous_SNV
RCC_T9--1	chr19:15227199	C	A	395	0.299	276	33.304	9.846	118	32.085	8.499	237	86	ILVBL	intronic	NA
RCC_T9--2	chr19:15227199	C	A	429	0.091	390	34.910	6.453	39	32.513	6.774	365	29	ILVBL	intronic	NA
RCC_T9--3	chr19:15227199	C	A	427	0.267	313	35.176	7.246	114	32.061	8.775	294	88	ILVBL	intronic	NA
RCC_T9--4	chr19:15227199	C	A	371	0.191	300	34.337	7.081	71	32.127	8.094	277	51	ILVBL	intronic	NA
RCC_T9--5	chr19:15227199	C	A	295	0.247	218	32.404	8.378	73	27.822	10.779	185	41	ILVBL	intronic	NA
RCC_T9--GL	chr19:15227199	C	NA	258	0	255	33.451	7.535	0	0	0	228	0	ILVBL	intronic	NA
RCC_T9--1	chr19:15582679	T	C	50	0.280	36	26.333	12.100	14	21.000	11.688	18	3	PGLYRP2	intronic	NA
RCC_T9--2	chr19:15582679	T	NA	76	0	66	30.000	9.184	0	0	0	43	0	PGLYRP2	intronic	NA
RCC_T9--3	chr19:15582679	T	NA	75	0	68	28.250	11.657	0	0	0	40	0	PGLYRP2	intronic	NA
RCC_T9--4	chr19:15582679	T	NA	92	0	84	29.298	10.045	0	0	0	54	0	PGLYRP2	intronic	NA
RCC_T9--5	chr19:15582679	T	NA	50	0	49	26.837	12.602	0	0	0	31	0	PGLYRP2	intronic	NA
RCC_T9--GL	chr19:15582679	T	NA	45	0	45	30.200	11.331	0	0	0	32	0	PGLYRP2	intronic	NA
RCC_T9--1	chr19:38706807	T	A	33	0.212	26	35.000	7.879	7	37.143	2.268	22	7	DPF1	exonic	nonsynonymous_SNV
RCC_T9--2	chr19:38706807	T	A	53	0.264	39	36.077	3.073	14	38.643	2.468	39	14	DPF1	exonic	nonsynonymous_SNV
RCC_T9--3	chr19:38706807	T	A	50	0.340	33	35.394	6.694	17	36.471	4.758	32	16	DPF1	exonic	nonsynonymous_SNV
RCC_T9--4	chr19:38706807	T	A	57	0.070	53	34.377	7.009	4	29.250	18.554	46	3	DPF1	exonic	nonsynonymous_SNV
RCC_T9--5	chr19:38706807	T	A	34	0.118	30	34.033	7.141	4	32.000	4.830	25	3	DPF1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr19:38706807	T	NA	44	0	43	33.558	7.139	0	0	0	36	0	DPF1	exonic	nonsynonymous_SNV
RCC_T9--1	chr19:45404592	G	NA	81	0	81	36.506	6.997	0	0	0	76	0	TOMM40	intronic	NA
RCC_T9--2	chr19:45404592	G	A	122	0.164	102	36.598	6.235	20	36.550	4.084	97	19	TOMM40	intronic	NA
RCC_T9--3	chr19:45404592	G	NA	104	0	104	38.144	2.980	0	0	0	103	0	TOMM40	intronic	NA
RCC_T9--4	chr19:45404592	G	NA	75	0	75	37.360	3.092	0	0	0	74	0	TOMM40	intronic	NA
RCC_T9--5	chr19:45404592	G	NA	65	0	63	34.492	9.296	0	0	0	56	0	TOMM40	intronic	NA
RCC_T9--GL	chr19:45404592	G	NA	101	0	100	35.750	7.228	0	0	0	92	0	TOMM40	intronic	NA
RCC_T9--1	chr19:46002794	T	NA	86	0	85	34.835	8.863	0	0	0	78	0	PPM1N	intronic	NA
RCC_T9--2	chr19:46002794	T	G	103	0.165	86	35.535	5.295	17	30.235	12.974	83	11	PPM1N	intronic	NA
RCC_T9--3	chr19:46002794	T	NA	103	0	101	36.248	7.710	0	0	0	95	0	PPM1N	intronic	NA
RCC_T9--4	chr19:46002794	T	NA	79	0	78	37.038	3.359	0	0	0	76	0	PPM1N	intronic	NA
RCC_T9--5	chr19:46002794	T	NA	66	0	65	33.985	9.380	0	0	0	56	0	PPM1N	intronic	NA
RCC_T9--GL	chr19:46002794	T	NA	52	0	50	34.560	6.993	0	0	0	45	0	PPM1N	intronic	NA
RCC_T9--1	chr19:55699578	T	NA	91	0	91	34.209	11.086	0	0	0	81	0	PTPRH	intronic	NA
RCC_T9--2	chr19:55699578	T	C	133	0.308	92	36.022	6.494	41	36.293	7.198	85	38	PTPRH	intronic	NA
RCC_T9--3	chr19:55699578	T	NA	114	0	114	37.219	5.555	0	0	0	109	0	PTPRH	intronic	NA
RCC_T9--4	chr19:55699578	T	C	99	0.071	90	35.456	6.847	7	36.714	4.192	82	7	PTPRH	intronic	NA
RCC_T9--5	chr19:55699578	T	C	80	0.100	72	34.833	8.117	8	38.250	2.375	66	8	PTPRH	intronic	NA
RCC_T9--GL	chr19:55699578	T	NA	71	0	70	36.543	4.693	0	0	0	67	0	PTPRH	intronic	NA
RCC_T9--1	chr19:5592897	G	NA	47	0	47	35.404	8.253	0	0	0	44	0	SAFB2	exonic	stopgain_SNV
RCC_T9--2	chr19:5592897	G	A	68	0.206	54	35.889	8.835	14	38.357	3.177	51	14	SAFB2	exonic	stopgain_SNV
RCC_T9--3	chr19:5592897	G	NA	50	0	50	37.880	5.971	0	0	0	48	0	SAFB2	exonic	stopgain_SNV
RCC_T9--4	chr19:5592897	G	NA	48	0	48	37.208	6.049	0	0	0	47	0	SAFB2	exonic	stopgain_SNV
RCC_T9--5	chr19:5592897	G	NA	46	0	46	36.217	4.447	0	0	0	45	0	SAFB2	exonic	stopgain_SNV
RCC_T9--GL	chr19:5592897	G	NA	51	0	51	34.118	7.423	0	0	0	47	0	SAFB2	exonic	stopgain_SNV
RCC_T9--1	chr19:58189363	C	NA	131	0	131	38.160	4.318	0	0	0	128	0	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--2	chr19:58189363	C	A	103	0.087	93	36.860	6.524	9	39.556	2.455	87	9	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--3	chr19:58189363	C	NA	108	0	108	37.250	7.033	0	0	0	101	0	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--4	chr19:58189363	C	A	78	0.231	60	38.200	4.250	18	38.500	3.294	59	18	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--5	chr19:58189363	C	A	88	0.307	61	38.230	3.879	27	37.630	3.794	60	27	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--GL	chr19:58189363	C	NA	117	0	117	37.496	5.005	0	0	0	113	0	ZSCAN4	exonic	nonsynonymous_SNV
RCC_T9--1	chr20:42265594	C	NA	25	0	25	38.560	2.888	0	0	0	25	0	IFT52	intronic	NA
RCC_T9--2	chr20:42265594	C	NA	39	0	38	38.053	5.432	0	0	0	37	0	IFT52	intronic	NA
RCC_T9--3	chr20:42265594	C	T	20	0.300	14	36.857	10.189	6	36.667	3.983	13	6	IFT52	intronic	NA
RCC_T9--4	chr20:42265594	C	NA	32	0	32	38.344	3.488	0	0	0	32	0	IFT52	intronic	NA
RCC_T9--5	chr20:42265594	C	NA	26	0	26	38.462	3.023	0	0	0	26	0	IFT52	intronic	NA
RCC_T9--GL	chr20:42265594	C	NA	37	0	37	38.649	2.811	0	0	0	36	0	IFT52	intronic	NA
RCC_T9--1	chr20:44669968	G	A	87	0.299	61	34.426	9.606	26	35.846	5.104	53	23	SLC12A5	exonic	synonymous_SNV
RCC_T9--2	chr20:44669968	G	A	84	0.310	58	33.966	10.319	26	33.154	7.958	53	21	SLC12A5	exonic	synonymous_SNV
RCC_T9--3	chr20:44669968	G	A	79	0.316	54	36.204	6.199	25	36.880	3.153	49	24	SLC12A5	exonic	synonymous_SNV
RCC_T9--4	chr20:44669968	G	A	81	0.272	59	35.847	5.617	22	35.909	8.112	56	21	SLC12A5	exonic	synonymous_SNV
RCC_T9--5	chr20:44669968	G	A	55	0.127	47	33.745	8.666	7	37.143	3.671	41	7	SLC12A5	exonic	synonymous_SNV
RCC_T9--GL	chr20:44669968	G	NA	41	0	41	36.902	3.247	0	0	0	41	0	SLC12A5	exonic	synonymous_SNV
RCC_T9--1	chr20:55748119	C	NA	101	0	101	34.386	7.912	0	0	0	89	0	BMP7	intronic	NA
RCC_T9--2	chr20:55748119	C	NA	150	0	148	34.250	7.802	0	0	0	131	0	BMP7	intronic	NA
RCC_T9--3	chr20:55748119	C	T	128	0.297	90	35.400	8.120	38	34.158	6.664	81	34	BMP7	intronic	NA
RCC_T9--4	chr20:55748119	C	NA	126	0	122	35.590	5.722	0	0	0	114	0	BMP7	intronic	NA
RCC_T9--5	chr20:55748119	C	NA	98	0	98	35.173	5.737	0	0	0	89	0	BMP7	intronic	NA
RCC_T9--GL	chr20:55748119	C	NA	67	0	67	33.537	8.300	0	0	0	56	0	BMP7	intronic	NA
RCC_T9--1	chr20:58470447	A	C	51	0.373	32	23.656	8.150	19	20.789	6.844	10	0	SYCP2	intronic	NA
RCC_T9--2	chr20:58470447	A	NA	106	0	102	24.353	7.567	0	0	0	25	0	SYCP2	intronic	NA
RCC_T9--3	chr20:58470447	A	C	75	0.213	59	24.576	7.314	16	22.438	5.727	16	2	SYCP2	intronic	NA
RCC_T9--4	chr20:58470447	A	NA	75	0	73	26.068	7.214	0	0	0	25	0	SYCP2	intronic	NA
RCC_T9--5	chr20:58470447	A	NA	83	0	80	23.312	8.081	0	0	0	22	0	SYCP2	intronic	NA
RCC_T9--GL	chr20:58470447	A	NA	52	0	50	26.080	5.613	0	0	0	14	0	SYCP2	intronic	NA
RCC_T9--1	chr2:15564612	C	NA	122	0	122	36.746	7.269	0	0	0	111	0	NBAS	intronic	NA
RCC_T9--2	chr2:15564612	C	G	117	0.128	102	37.578	5.882	15	39.067	2.314	100	15	NBAS	intronic	NA
RCC_T9--3	chr2:15564612	C	NA	123	0	123	38.260	5.287	0	0	0	119	0	NBAS	intronic	NA
RCC_T9--4	chr2:15564612	C	NA	89	0	89	37.169	6.368	0	0	0	85	0	NBAS	intronic	NA
RCC_T9--5	chr2:15564612	C	NA	93	0	92	37.272	6.860	0	0	0	87	0	NBAS	intronic	NA
RCC_T9--GL	chr2:15564612	C	NA	114	0	113	37.646	5.230	0	0	0	109	0	NBAS	intronic	NA
RCC_T9--1	chr2:172398163	G	T	35	0.229	26	36.192	7.833	8	38.875	2.031	24	8	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--2	chr2:172398163	G	T	47	0.064	44	34.932	8.974	3	40.667	0.577	39	3	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--3	chr2:172398163	G	T	32	0.219	25	36.120	7.928	7	36.571	3.155	24	7	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--4	chr2:172398163	G	T	36	0.028	35	36.686	3.496	1	35.000	0.000	34	1	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--5	chr2:172398163	G	T	28	0.286	20	36.200	5.367	8	35.750	2.252	19	8	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr2:172398163	G	NA	40	0	40	36.425	5.491	0	0	0	37	0	CYBRD1	exonic	nonsynonymous_SNV
RCC_T9--1	chr2:190617297	A	NA	41	0	41	37.390	7.803	0	0	0	39	0	OSGEPL1	intronic	NA
RCC_T9--2	chr2:190617297	A	NA	34	0	34	37.824	6.685	0	0	0	33	0	OSGEPL1	intronic	NA
RCC_T9--3	chr2:190617297	A	NA	28	0	28	37.893	7.375	0	0	0	27	0	OSGEPL1	intronic	NA
RCC_T9--4	chr2:190617297	A	G	29	0.172	24	39.750	2.132	5	34.400	9.423	24	4	OSGEPL1	intronic	NA
RCC_T9--5	chr2:190617297	A	NA	32	0	32	39.062	2.793	0	0	0	32	0	OSGEPL1	intronic	NA
RCC_T9--GL	chr2:190617297	A	NA	34	0	34	38.588	3.799	0	0	0	33	0	OSGEPL1	intronic	NA
RCC_T9--1	chr2:21227481	C	NA	83	0	82	37.756	3.554	0	0	0	81	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--2	chr2:21227481	C	NA	123	0	123	37.626	5.662	0	0	0	119	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--3	chr2:21227481	C	T	66	0.212	52	38.904	2.411	14	38.500	2.345	52	14	APOB	exonic	nonsynonymous_SNV
RCC_T9--4	chr2:21227481	C	NA	76	0	76	38.158	3.589	0	0	0	74	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--5	chr2:21227481	C	NA	80	0	80	38.000	4.927	0	0	0	78	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--GL	chr2:21227481	C	NA	87	0	85	38.106	4.536	0	0	0	83	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--1	chr2:21228087	C	NA	168	0	166	37.464	5.175	0	0	0	158	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--2	chr2:21228087	C	A	170	0.147	145	37.152	5.010	25	38.040	4.286	138	23	APOB	exonic	nonsynonymous_SNV
RCC_T9--3	chr2:21228087	C	A	150	0.007	149	37.396	6.354	1	40.000	0.000	142	1	APOB	exonic	nonsynonymous_SNV
RCC_T9--4	chr2:21228087	C	NA	139	0	139	38.094	3.607	0	0	0	136	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--5	chr2:21228087	C	NA	126	0	124	35.903	7.271	0	0	0	117	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--GL	chr2:21228087	C	NA	174	0	173	36.676	5.195	0	0	0	161	0	APOB	exonic	nonsynonymous_SNV
RCC_T9--1	chr2:232317516	C	T	80	0.013	77	35.221	10.074	1	31.000	0.000	71	1	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--2	chr2:232317516	C	T	94	0.160	79	37.848	5.099	15	37.533	2.588	77	15	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--3	chr2:232317516	C	NA	79	0	79	36.570	8.522	0	0	0	74	0	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--4	chr2:232317516	C	T	59	0.305	39	37.821	3.170	18	38.389	2.704	38	18	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--5	chr2:232317516	C	T	58	0.121	51	36.961	6.109	7	36.714	2.812	49	7	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--GL	chr2:232317516	C	NA	55	0	55	34.491	8.364	0	0	0	48	0	B3GNT7(dist=51641),NCL(dist=1943)	intergenic	NA
RCC_T9--1	chr2:25470002	A	G	97	0.052	92	34.337	8.244	5	39.600	0.894	79	5	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--2	chr2:25470002	A	G	97	0.082	89	34.978	5.553	8	35.500	2.976	81	8	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--3	chr2:25470002	A	G	89	0.011	88	36.466	3.533	1	41.000	0.000	83	1	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--4	chr2:25470002	A	G	65	0.169	54	35.685	5.977	11	35.364	2.803	52	11	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--5	chr2:25470002	A	NA	50	0	48	32.771	9.816	0	0	0	38	0	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--GL	chr2:25470002	A	NA	62	0	62	33.581	7.556	0	0	0	53	0	DNMT3A	exonic	nonsynonymous_SNV
RCC_T9--1	chr2:42513554	A	NA	57	0	57	37.316	3.660	0	0	0	55	0	EML4	intronic	NA
RCC_T9--2	chr2:42513554	A	NA	64	0	64	37.891	5.544	0	0	0	62	0	EML4	intronic	NA
RCC_T9--3	chr2:42513554	A	NA	51	0	51	38.588	3.008	0	0	0	50	0	EML4	intronic	NA
RCC_T9--4	chr2:42513554	A	G	51	0.137	43	37.442	3.340	7	35.571	8.638	42	6	EML4	intronic	NA
RCC_T9--5	chr2:42513554	A	NA	67	0	66	37.288	3.503	0	0	0	65	0	EML4	intronic	NA
RCC_T9--GL	chr2:42513554	A	NA	57	0	57	37.614	3.604	0	0	0	54	0	EML4	intronic	NA
RCC_T9--1	chr3:158541349	C	NA	186	0	185	33.681	10.865	0	0	0	150	0	MFSD1	intronic	NA
RCC_T9--2	chr3:158541349	C	NA	231	0	229	33.821	9.524	0	0	0	187	0	MFSD1	intronic	NA
RCC_T9--3	chr3:158541349	C	T	153	0.190	123	36.008	8.770	29	38.276	3.127	111	29	MFSD1	intronic	NA
RCC_T9--4	chr3:158541349	C	NA	129	0	129	34.519	8.659	0	0	0	109	0	MFSD1	intronic	NA
RCC_T9--5	chr3:158541349	C	NA	155	0	153	31.190	11.790	0	0	0	112	0	MFSD1	intronic	NA
RCC_T9--GL	chr3:158541349	C	NA	154	0	151	31.430	12.408	0	0	0	115	0	MFSD1	intronic	NA
RCC_T9--1	chr3:47058745	C	G	73	0.603	29	37.310	3.403	44	38.273	3.053	28	43	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--2	chr3:47058745	C	G	106	0.340	70	37.686	4.912	36	38.111	3.284	68	36	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--3	chr3:47058745	C	G	67	0.552	30	37.333	7.198	37	37.622	5.117	29	36	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--4	chr3:47058745	C	G	99	0.354	64	38.766	2.844	35	37.114	5.149	63	33	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--5	chr3:47058745	C	G	80	0.388	49	36.878	5.453	31	37.290	5.551	45	29	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--GL	chr3:47058745	C	NA	89	0	89	36.955	4.805	0	0	0	85	0	SETD2(NM_014159:exon22:c.7534-1G>C)	splicing	NA
RCC_T9--1	chr3:57847695	A	NA	50	0	50	38.140	3.736	0	0	0	49	0	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--2	chr3:57847695	A	NA	96	0	96	38.042	3.955	0	0	0	92	0	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--3	chr3:57847695	A	NA	52	0	52	38.500	4.901	0	0	0	51	0	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--4	chr3:57847695	A	C	70	0.286	50	38.060	3.925	20	38.700	2.273	49	20	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--5	chr3:57847695	A	NA	54	0	54	37.148	7.426	0	0	0	52	0	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--GL	chr3:57847695	A	NA	65	0	65	38.369	3.471	0	0	0	63	0	SLMAP	exonic	nonsynonymous_SNV
RCC_T9--1	chr3:77600220	T	C	36	0.333	24	36.875	7.759	12	38.750	2.454	23	12	ROBO2	intronic	NA
RCC_T9--2	chr3:77600220	T	C	42	0.238	32	38.812	3.524	10	37.900	3.900	30	10	ROBO2	intronic	NA
RCC_T9--3	chr3:77600220	T	C	33	0.273	24	38.875	2.213	9	40.111	1.054	24	9	ROBO2	intronic	NA
RCC_T9--4	chr3:77600220	T	C	33	0.333	21	38.857	2.220	11	38.545	2.296	21	11	ROBO2	intronic	NA
RCC_T9--5	chr3:77600220	T	NA	34	0	33	38.545	2.551	0	0	0	33	0	ROBO2	intronic	NA
RCC_T9--GL	chr3:77600220	T	NA	37	0	37	38.432	4.919	0	0	0	35	0	ROBO2	intronic	NA
RCC_T9--1	chr4:15018888	A	T	58	0.293	41	38.829	2.333	17	37.882	3.982	41	16	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--2	chr4:15018888	A	T	90	0.211	71	38.085	5.084	19	38.053	2.896	69	19	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--3	chr4:15018888	A	T	89	0.326	60	37.883	5.418	29	38.517	2.641	59	29	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--4	chr4:15018888	A	T	66	0.091	60	37.167	7.445	6	39.167	2.994	56	6	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--5	chr4:15018888	A	NA	56	0	55	37.964	5.725	0	0	0	54	0	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr4:15018888	A	NA	55	0	55	36.891	5.626	0	0	0	52	0	CPEB2	exonic	nonsynonymous_SNV
RCC_T9--1	chr4:174448468	C	NA	426	0	426	34.038	8.322	0	0	0	377	0	HAND2	exonic	nonsynonymous_SNV
RCC_T9--2	chr4:174448468	C	T	618	0.252	459	33.366	8.723	156	34.545	6.357	401	137	HAND2	exonic	nonsynonymous_SNV
RCC_T9--3	chr4:174448468	C	NA	604	0	603	35.668	5.867	0	0	0	569	0	HAND2	exonic	nonsynonymous_SNV
RCC_T9--4	chr4:174448468	C	T	514	0.101	461	34.946	5.967	52	33.442	8.698	431	45	HAND2	exonic	nonsynonymous_SNV
RCC_T9--5	chr4:174448468	C	NA	385	0	383	32.757	8.740	0	0	0	326	0	HAND2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr4:174448468	C	NA	379	0	378	33.201	8.428	0	0	0	329	0	HAND2	exonic	nonsynonymous_SNV
RCC_T9--1	chr4:20525485	C	NA	543	0	543	36.810	6.664	0	0	0	512	0	SLIT2	exonic	synonymous_SNV
RCC_T9--2	chr4:20525485	C	NA	507	0	500	37.560	4.872	0	0	0	487	0	SLIT2	exonic	synonymous_SNV
RCC_T9--3	chr4:20525485	C	T	419	0.229	323	38.288	4.148	96	37.448	6.151	316	92	SLIT2	exonic	synonymous_SNV
RCC_T9--4	chr4:20525485	C	NA	350	0	349	36.799	6.521	0	0	0	329	0	SLIT2	exonic	synonymous_SNV
RCC_T9--5	chr4:20525485	C	NA	361	0	359	36.501	6.582	0	0	0	334	0	SLIT2	exonic	synonymous_SNV
RCC_T9--GL	chr4:20525485	C	NA	438	0	435	36.915	5.454	0	0	0	415	0	SLIT2	exonic	synonymous_SNV
RCC_T9--1	chr4:57179508	A	C	53	0.321	35	37.000	5.801	17	34.176	9.098	31	15	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--2	chr4:57179508	A	NA	63	0	63	36.508	5.248	0	0	0	61	0	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--3	chr4:57179508	A	C	68	0.265	50	35.840	7.539	18	38.000	2.058	45	18	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--4	chr4:57179508	A	C	43	0.186	35	36.686	3.521	8	37.625	2.066	34	8	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--5	chr4:57179508	A	C	41	0.390	24	34.917	8.831	16	35.188	3.082	22	15	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--GL	chr4:57179508	A	NA	49	0	48	35.229	6.508	0	0	0	41	0	KIAA1211	exonic	nonsynonymous_SNV
RCC_T9--1	chr4:945621	G	NA	60	0	60	35.683	8.556	0	0	0	56	0	TMEM175	intronic	NA
RCC_T9--2	chr4:945621	G	A	58	0.172	48	38.521	3.087	10	39.000	2.494	47	10	TMEM175	intronic	NA
RCC_T9--3	chr4:945621	G	NA	76	0	76	36.382	7.617	0	0	0	70	0	TMEM175	intronic	NA
RCC_T9--4	chr4:945621	G	NA	50	0	49	37.061	3.722	0	0	0	47	0	TMEM175	intronic	NA
RCC_T9--5	chr4:945621	G	NA	41	0	39	34.385	9.380	0	0	0	35	0	TMEM175	intronic	NA
RCC_T9--GL	chr4:945621	G	NA	42	0	42	36.143	4.398	0	0	0	39	0	TMEM175	intronic	NA
RCC_T9--1	chr5:105752160	T	C	61	0.295	43	37.977	3.642	18	37.278	4.725	41	17	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--2	chr5:105752160	T	NA	72	0	72	37.347	5.685	0	0	0	70	0	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--3	chr5:105752160	T	NA	70	0	70	38.229	5.025	0	0	0	68	0	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--4	chr5:105752160	T	NA	42	0	42	36.976	8.423	0	0	0	39	0	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--5	chr5:105752160	T	NA	53	0	53	36.755	7.163	0	0	0	49	0	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--GL	chr5:105752160	T	NA	45	0	45	35.111	7.714	0	0	0	42	0	RAB9BP1(dist=1316361),LOC102467213(dist=398738)	intergenic	NA
RCC_T9--1	chr5:140625817	G	A	236	0.280	170	34.759	7.765	66	33.712	8.857	147	56	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--2	chr5:140625817	G	NA	198	0	196	34.709	7.690	0	0	0	174	0	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--3	chr5:140625817	G	NA	226	0	226	36.146	5.419	0	0	0	210	0	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--4	chr5:140625817	G	NA	131	0	129	35.287	7.396	0	0	0	117	0	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--5	chr5:140625817	G	NA	116	0	115	33.174	7.736	0	0	0	94	0	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--GL	chr5:140625817	G	NA	110	0	108	34.787	5.137	0	0	0	97	0	PCDHB15	exonic	nonsynonymous_SNV
RCC_T9--1	chr5:177398940	G	A	197	0.218	154	37.279	5.598	43	36.674	8.277	148	41	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--2	chr5:177398940	G	A	168	0.292	118	37.051	6.042	49	37.388	3.121	113	49	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--3	chr5:177398940	G	A	150	0.253	112	37.884	3.422	38	38.553	2.457	109	38	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--4	chr5:177398940	G	A	96	0.125	83	37.458	5.128	12	38.333	2.570	79	12	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--5	chr5:177398940	G	A	92	0.185	75	36.307	4.992	17	38.588	2.830	69	17	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--GL	chr5:177398940	G	NA	113	0	112	36.616	4.890	0	0	0	108	0	LOC728554(dist=87671),PROP1(dist=20296)	intergenic	NA
RCC_T9--1	chr5:60369007	C	A	205	0.444	114	38.772	2.099	91	38.626	3.028	114	89	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--2	chr5:60369007	C	A	194	0.227	150	37.740	6.034	44	37.136	6.389	145	42	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--3	chr5:60369007	C	A	204	0.461	110	38.764	2.716	94	38.660	4.272	109	93	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--4	chr5:60369007	C	A	124	0.331	83	37.434	3.908	41	37.927	4.268	78	39	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--5	chr5:60369007	C	A	113	0.301	79	38.608	3.236	34	38.853	2.076	78	34	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--GL	chr5:60369007	C	NA	145	0	145	38.090	3.240	0	0	0	141	0	NDUFAF2	exonic	nonsynonymous_SNV
RCC_T9--1	chr5:6602757	G	C	69	0.507	34	37.971	2.691	35	36.457	7.022	34	32	NSUN2	intronic	NA
RCC_T9--2	chr5:6602757	G	C	55	0.182	45	36.756	5.947	10	38.200	2.616	44	10	NSUN2	intronic	NA
RCC_T9--3	chr5:6602757	G	C	53	0.509	26	38.731	3.054	27	38.333	3.234	25	26	NSUN2	intronic	NA
RCC_T9--4	chr5:6602757	G	C	51	0.392	30	38.133	4.167	20	36.100	8.681	29	18	NSUN2	intronic	NA
RCC_T9--5	chr5:6602757	G	C	32	0.281	23	37.217	5.359	9	39.333	2.345	22	9	NSUN2	intronic	NA
RCC_T9--GL	chr5:6602757	G	NA	46	0	46	37.326	4.164	0	0	0	45	0	NSUN2	intronic	NA
RCC_T9--1	chr5:70858345	C	A	281	0.231	209	37.263	6.517	65	37.523	5.571	196	62	BDP1	exonic	nonsynonymous_SNV
RCC_T9--2	chr5:70858345	C	A	292	0.171	239	37.862	5.930	50	38.180	6.019	228	48	BDP1	exonic	nonsynonymous_SNV
RCC_T9--3	chr5:70858345	C	A	297	0.192	238	38.517	4.850	57	38.649	3.159	233	56	BDP1	exonic	nonsynonymous_SNV
RCC_T9--4	chr5:70858345	C	A	207	0.140	177	38.542	3.787	29	38.862	4.596	173	28	BDP1	exonic	nonsynonymous_SNV
RCC_T9--5	chr5:70858345	C	NA	215	0	214	38.201	4.458	0	0	0	208	0	BDP1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr5:70858345	C	NA	247	0	245	37.984	5.058	0	0	0	239	0	BDP1	exonic	nonsynonymous_SNV
RCC_T9--1	chr5:89933648	G	A	268	0.250	200	36.635	6.592	67	33.866	9.546	189	54	GPR98	exonic	nonsynonymous_SNV
RCC_T9--2	chr5:89933648	G	NA	268	0	268	37.071	5.992	0	0	0	255	0	GPR98	exonic	nonsynonymous_SNV
RCC_T9--3	chr5:89933648	G	NA	224	0	224	36.772	6.076	0	0	0	208	0	GPR98	exonic	nonsynonymous_SNV
RCC_T9--4	chr5:89933648	G	NA	172	0	171	37.006	6.143	0	0	0	163	0	GPR98	exonic	nonsynonymous_SNV
RCC_T9--5	chr5:89933648	G	NA	164	0	163	36.485	7.175	0	0	0	152	0	GPR98	exonic	nonsynonymous_SNV
RCC_T9--GL	chr5:89933648	G	NA	184	0	184	36.880	5.925	0	0	0	175	0	GPR98	exonic	nonsynonymous_SNV
RCC_T9--1	chr5:94289005	A	T	320	0.234	243	36.996	5.398	75	36.947	5.314	228	72	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--2	chr5:94289005	A	NA	362	0	361	37.252	5.149	0	0	0	348	0	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--3	chr5:94289005	A	T	299	0.214	235	37.766	4.158	64	37.594	5.715	232	61	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--4	chr5:94289005	A	T	217	0.129	187	37.743	4.078	28	37.964	4.247	184	27	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--5	chr5:94289005	A	T	199	0.161	166	37.614	4.504	32	36.750	4.859	155	30	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr5:94289005	A	NA	211	0	209	36.742	6.020	0	0	0	197	0	MCTP1	exonic	nonsynonymous_SNV
RCC_T9--1	chr5:96237870	A	NA	204	0	204	37.225	5.123	0	0	0	195	0	ERAP2	intronic	NA
RCC_T9--2	chr5:96237870	A	NA	156	0	155	37.974	3.267	0	0	0	153	0	ERAP2	intronic	NA
RCC_T9--3	chr5:96237870	A	G	143	0.301	100	38.150	4.554	43	38.279	3.142	96	42	ERAP2	intronic	NA
RCC_T9--4	chr5:96237870	A	NA	105	0	105	38.019	2.664	0	0	0	105	0	ERAP2	intronic	NA
RCC_T9--5	chr5:96237870	A	NA	105	0	105	37.105	4.314	0	0	0	100	0	ERAP2	intronic	NA
RCC_T9--GL	chr5:96237870	A	NA	123	0	123	37.553	4.928	0	0	0	119	0	ERAP2	intronic	NA
RCC_T9--1	chr6:129959529	G	T	82	0.183	67	37.940	3.054	15	38.733	2.434	67	15	ARHGAP18	intronic	NA
RCC_T9--2	chr6:129959529	G	NA	102	0	101	37.574	3.700	0	0	0	99	0	ARHGAP18	intronic	NA
RCC_T9--3	chr6:129959529	G	NA	67	0	67	37.910	4.542	0	0	0	62	0	ARHGAP18	intronic	NA
RCC_T9--4	chr6:129959529	G	NA	78	0	78	38.372	3.553	0	0	0	77	0	ARHGAP18	intronic	NA
RCC_T9--5	chr6:129959529	G	NA	71	0	71	36.634	6.935	0	0	0	66	0	ARHGAP18	intronic	NA
RCC_T9--GL	chr6:129959529	G	NA	97	0	97	36.990	4.351	0	0	0	92	0	ARHGAP18	intronic	NA
RCC_T9--1	chr6:41900492	G	NA	68	0	68	33.191	6.748	0	0	0	56	0	BYSL	UTR3	NA
RCC_T9--2	chr6:41900492	G	NA	74	0	74	33.108	5.651	0	0	0	57	0	BYSL	UTR3	NA
RCC_T9--3	chr6:41900492	G	C	72	0.222	56	33.911	7.537	16	36.125	4.717	48	14	BYSL	UTR3	NA
RCC_T9--4	chr6:41900492	G	NA	58	0	58	31.552	7.561	0	0	0	45	0	BYSL	UTR3	NA
RCC_T9--5	chr6:41900492	G	NA	48	0	47	33.277	4.042	0	0	0	41	0	BYSL	UTR3	NA
RCC_T9--GL	chr6:41900492	G	NA	49	0	49	33.061	4.888	0	0	0	39	0	BYSL	UTR3	NA
RCC_T9--1	chr6:64709044	A	NA	110	0	110	36.864	4.763	0	0	0	106	0	EYS	exonic	nonsynonymous_SNV
RCC_T9--2	chr6:64709044	A	NA	101	0	101	35.396	8.563	0	0	0	92	0	EYS	exonic	nonsynonymous_SNV
RCC_T9--3	chr6:64709044	A	G	97	0.320	66	37.182	5.746	31	35.968	8.195	61	28	EYS	exonic	nonsynonymous_SNV
RCC_T9--4	chr6:64709044	A	NA	76	0	76	36.513	5.686	0	0	0	72	0	EYS	exonic	nonsynonymous_SNV
RCC_T9--5	chr6:64709044	A	NA	92	0	91	35.220	7.226	0	0	0	80	0	EYS	exonic	nonsynonymous_SNV
RCC_T9--GL	chr6:64709044	A	NA	114	0	114	36.342	5.397	0	0	0	106	0	EYS	exonic	nonsynonymous_SNV
RCC_T9--1	chr6:65767463	A	T	86	0.279	62	38.000	4.566	24	38.208	3.007	60	24	EYS	intronic	NA
RCC_T9--2	chr6:65767463	A	NA	91	0	91	38.022	2.793	0	0	0	91	0	EYS	intronic	NA
RCC_T9--3	chr6:65767463	A	NA	65	0	65	39.123	2.809	0	0	0	64	0	EYS	intronic	NA
RCC_T9--4	chr6:65767463	A	NA	57	0	56	38.000	3.638	0	0	0	54	0	EYS	intronic	NA
RCC_T9--5	chr6:65767463	A	NA	66	0	66	37.136	5.770	0	0	0	62	0	EYS	intronic	NA
RCC_T9--GL	chr6:65767463	A	NA	83	0	83	37.783	3.524	0	0	0	82	0	EYS	intronic	NA
RCC_T9--1	chr6:70894811	T	A	100	0.310	69	37.116	5.738	31	36.903	8.592	65	29	COL19A1	intronic	NA
RCC_T9--2	chr6:70894811	T	A	109	0.239	82	38.244	4.747	26	38.346	3.006	81	25	COL19A1	intronic	NA
RCC_T9--3	chr6:70894811	T	A	76	0.329	51	37.941	5.722	25	37.960	2.908	50	25	COL19A1	intronic	NA
RCC_T9--4	chr6:70894811	T	A	77	0.156	65	37.092	5.584	12	34.917	7.821	62	10	COL19A1	intronic	NA
RCC_T9--5	chr6:70894811	T	A	57	0.228	44	36.864	5.134	13	36.692	4.049	41	12	COL19A1	intronic	NA
RCC_T9--GL	chr6:70894811	T	NA	82	0	81	36.296	6.458	0	0	0	76	0	COL19A1	intronic	NA
RCC_T9--1	chr6:76022955	T	G	105	0.343	69	36.275	5.610	36	37.306	4.027	64	35	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--2	chr6:76022955	T	G	172	0.140	148	37.189	6.202	24	36.000	8.081	141	22	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--3	chr6:76022955	T	G	114	0.254	85	36.882	6.134	29	39.034	2.368	81	29	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--4	chr6:76022955	T	G	106	0.198	84	37.893	2.937	21	38.286	3.212	84	21	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--5	chr6:76022955	T	G	113	0.248	84	36.762	5.594	28	37.464	3.746	80	27	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--GL	chr6:76022955	T	NA	84	0	84	36.143	6.666	0	0	0	77	0	FILIP1	exonic	nonsynonymous_SNV
RCC_T9--1	chr6:99848501	T	NA	437	0	435	34.301	9.699	0	0	0	368	0	PNISR	exonic	nonsynonymous_SNV
RCC_T9--2	chr6:99848501	T	C	614	0.204	487	35.684	7.936	125	36.752	6.888	441	118	PNISR	exonic	nonsynonymous_SNV
RCC_T9--3	chr6:99848501	T	C	471	0.002	468	36.658	6.880	1	41.000	0.000	437	1	PNISR	exonic	nonsynonymous_SNV
RCC_T9--4	chr6:99848501	T	C	436	0.202	348	35.724	7.552	88	35.989	5.694	314	82	PNISR	exonic	nonsynonymous_SNV
RCC_T9--5	chr6:99848501	T	C	385	0.132	332	34.551	9.050	51	35.765	8.162	291	46	PNISR	exonic	nonsynonymous_SNV
RCC_T9--GL	chr6:99848501	T	NA	479	0	474	32.823	10.946	0	0	0	384	0	PNISR	exonic	nonsynonymous_SNV
RCC_T9--1	chr7:103179752	G	C	327	0.364	207	38.261	2.700	119	36.672	6.389	206	111	RELN	exonic	nonsynonymous_SNV
RCC_T9--2	chr7:103179752	G	C	500	0.002	497	37.571	6.098	1	33.000	0.000	479	1	RELN	exonic	nonsynonymous_SNV
RCC_T9--3	chr7:103179752	G	NA	354	0	354	38.260	4.081	0	0	0	344	0	RELN	exonic	nonsynonymous_SNV
RCC_T9--4	chr7:103179752	G	NA	344	0	343	38.050	4.733	0	0	0	334	0	RELN	exonic	nonsynonymous_SNV
RCC_T9--5	chr7:103179752	G	NA	388	0	387	37.310	5.366	0	0	0	370	0	RELN	exonic	nonsynonymous_SNV
RCC_T9--GL	chr7:103179752	G	NA	330	0	329	37.568	4.567	0	0	0	317	0	RELN	exonic	nonsynonymous_SNV
RCC_T9--1	chr7:128531370	G	NA	166	0	166	31.861	11.017	0	0	0	132	0	KCP	intronic	NA
RCC_T9--2	chr7:128531370	G	NA	271	0	269	33.959	9.700	0	0	0	238	0	KCP	intronic	NA
RCC_T9--3	chr7:128531370	G	A	166	0.241	126	34.770	7.389	40	36.275	4.546	113	38	KCP	intronic	NA
RCC_T9--4	chr7:128531370	G	NA	202	0	202	33.886	7.744	0	0	0	185	0	KCP	intronic	NA
RCC_T9--5	chr7:128531370	G	NA	120	0	119	31.908	9.855	0	0	0	92	0	KCP	intronic	NA
RCC_T9--GL	chr7:128531370	G	NA	66	0	65	31.431	10.886	0	0	0	48	0	KCP	intronic	NA
RCC_T9--1	chr7:44608506	A	NA	646	0	645	36.394	6.793	0	0	0	606	0	DDX56	exonic	nonsynonymous_SNV
RCC_T9--2	chr7:44608506	A	NA	869	0	867	36.970	5.806	0	0	0	822	0	DDX56	exonic	nonsynonymous_SNV
RCC_T9--3	chr7:44608506	A	C	562	0.242	425	37.056	5.734	136	37.331	6.840	403	129	DDX56	exonic	nonsynonymous_SNV
RCC_T9--4	chr7:44608506	A	NA	590	0	590	36.969	5.343	0	0	0	567	0	DDX56	exonic	nonsynonymous_SNV
RCC_T9--5	chr7:44608506	A	NA	499	0	496	36.407	6.576	0	0	0	461	0	DDX56	exonic	nonsynonymous_SNV
RCC_T9--GL	chr7:44608506	A	NA	483	0	479	36.503	5.439	0	0	0	449	0	DDX56	exonic	nonsynonymous_SNV
RCC_T9--1	chr7:94047921	A	NA	62	0	61	38.590	3.853	0	0	0	58	0	COL1A2	intronic	NA
RCC_T9--2	chr7:94047921	A	C	107	0.168	88	38.602	4.860	18	32.722	13.083	87	15	COL1A2	intronic	NA
RCC_T9--3	chr7:94047921	A	NA	75	0	75	37.400	5.299	0	0	0	67	0	COL1A2	intronic	NA
RCC_T9--4	chr7:94047921	A	C	79	0.165	65	36.800	7.222	13	39.846	1.725	60	13	COL1A2	intronic	NA
RCC_T9--5	chr7:94047921	A	C	89	0.135	77	38.299	3.970	12	38.333	2.774	74	12	COL1A2	intronic	NA
RCC_T9--GL	chr7:94047921	A	NA	69	0	68	37.015	6.398	0	0	0	63	0	COL1A2	intronic	NA
RCC_T9--1	chr8:124546913	T	NA	208	0	208	37.716	4.791	0	0	0	202	0	FBXO32	intronic	NA
RCC_T9--2	chr8:124546913	T	G	215	0.205	171	36.924	5.249	44	37.545	5.986	161	43	FBXO32	intronic	NA
RCC_T9--3	chr8:124546913	T	NA	164	0	164	37.787	4.699	0	0	0	161	0	FBXO32	intronic	NA
RCC_T9--4	chr8:124546913	T	G	196	0.204	155	37.755	4.257	40	37.575	6.389	152	39	FBXO32	intronic	NA
RCC_T9--5	chr8:124546913	T	G	148	0.304	102	36.941	4.809	45	37.711	3.429	97	44	FBXO32	intronic	NA
RCC_T9--GL	chr8:124546913	T	NA	190	0	189	37.519	3.383	0	0	0	185	0	FBXO32	intronic	NA
RCC_T9--1	chr8:139838893	G	NA	91	0	91	36.549	5.737	0	0	0	85	0	COL22A1	intronic	NA
RCC_T9--2	chr8:139838893	G	NA	77	0	77	36.675	5.796	0	0	0	73	0	COL22A1	intronic	NA
RCC_T9--3	chr8:139838893	G	NA	78	0	78	37.782	2.854	0	0	0	78	0	COL22A1	intronic	NA
RCC_T9--4	chr8:139838893	G	NA	50	0	50	35.900	6.855	0	0	0	47	0	COL22A1	intronic	NA
RCC_T9--5	chr8:139838893	G	T	55	0.255	41	34.244	10.059	14	37.143	3.371	36	14	COL22A1	intronic	NA
RCC_T9--GL	chr8:139838893	G	NA	76	0	76	36.539	6.432	0	0	0	73	0	COL22A1	intronic	NA
RCC_T9--1	chr8:142266842	C	NA	235	0	235	37.166	5.335	0	0	0	226	0	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--2	chr8:142266842	C	T	229	0.166	190	36.337	6.855	38	38.316	3.094	178	38	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--3	chr8:142266842	C	NA	204	0	204	37.221	5.750	0	0	0	195	0	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--4	chr8:142266842	C	NA	231	0	231	36.939	4.618	0	0	0	223	0	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--5	chr8:142266842	C	NA	190	0	189	36.360	5.592	0	0	0	183	0	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--GL	chr8:142266842	C	NA	185	0	185	35.930	7.056	0	0	0	172	0	SLC45A4(dist=2114),LOC731779(dist=83806)	intergenic	NA
RCC_T9--1	chr8:143961435	A	T	68	0.309	47	37.298	4.481	21	37.143	5.902	45	20	CYP11B1	upstream	NA
RCC_T9--2	chr8:143961435	A	T	76	0.105	67	38.687	3.001	8	39.125	2.800	65	8	CYP11B1	upstream	NA
RCC_T9--3	chr8:143961435	A	T	76	0.329	51	38.431	2.968	25	37.240	4.013	51	23	CYP11B1	upstream	NA
RCC_T9--4	chr8:143961435	A	T	68	0.250	50	38.400	4.180	17	38.647	2.234	49	17	CYP11B1	upstream	NA
RCC_T9--5	chr8:143961435	A	T	62	0.145	53	35.887	7.089	9	36.333	5.979	46	8	CYP11B1	upstream	NA
RCC_T9--GL	chr8:143961435	A	NA	43	0	42	38.333	2.952	0	0	0	42	0	CYP11B1	upstream	NA
RCC_T9--1	chr8:144996887	G	NA	133	0	133	33.414	8.386	0	0	0	112	0	PLEC	exonic	nonsynonymous_SNV
RCC_T9--2	chr8:144996887	G	C	179	0.240	136	34.993	6.901	43	32.907	9.337	125	38	PLEC	exonic	nonsynonymous_SNV
RCC_T9--3	chr8:144996887	G	NA	150	0	150	34.527	8.576	0	0	0	135	0	PLEC	exonic	nonsynonymous_SNV
RCC_T9--4	chr8:144996887	G	NA	143	0	142	33.669	8.304	0	0	0	122	0	PLEC	exonic	nonsynonymous_SNV
RCC_T9--5	chr8:144996887	G	NA	102	0	102	32.010	10.109	0	0	0	79	0	PLEC	exonic	nonsynonymous_SNV
RCC_T9--GL	chr8:144996887	G	NA	110	0	110	32.300	10.011	0	0	0	92	0	PLEC	exonic	nonsynonymous_SNV
RCC_T9--1	chr8:22438281	G	NA	101	0	101	35.257	8.373	0	0	0	90	0	PDLIM2	intronic	NA
RCC_T9--2	chr8:22438281	G	NA	92	0	92	36.989	5.183	0	0	0	85	0	PDLIM2	intronic	NA
RCC_T9--3	chr8:22438281	G	T	79	0.329	53	37.321	4.389	26	38.769	1.945	50	26	PDLIM2	intronic	NA
RCC_T9--4	chr8:22438281	G	NA	59	0	59	37.593	3.587	0	0	0	57	0	PDLIM2	intronic	NA
RCC_T9--5	chr8:22438281	G	NA	50	0	50	34.320	9.248	0	0	0	45	0	PDLIM2	intronic	NA
RCC_T9--GL	chr8:22438281	G	NA	67	0	66	36.470	4.565	0	0	0	62	0	PDLIM2	intronic	NA
RCC_T9--1	chr8:22438282	C	NA	102	0	102	34.578	9.193	0	0	0	90	0	PDLIM2	intronic	NA
RCC_T9--2	chr8:22438282	C	NA	93	0	93	36.634	4.738	0	0	0	84	0	PDLIM2	intronic	NA
RCC_T9--3	chr8:22438282	C	T	80	0.325	54	36.981	3.006	26	38.115	2.582	51	26	PDLIM2	intronic	NA
RCC_T9--4	chr8:22438282	C	NA	57	0	57	36.316	5.419	0	0	0	53	0	PDLIM2	intronic	NA
RCC_T9--5	chr8:22438282	C	NA	51	0	51	33.000	10.010	0	0	0	44	0	PDLIM2	intronic	NA
RCC_T9--GL	chr8:22438282	C	NA	67	0	65	35.815	4.524	0	0	0	60	0	PDLIM2	intronic	NA
RCC_T9--1	chr9:34381440	C	T	381	0.341	251	36.382	5.727	130	36.369	6.552	237	123	C9orf24	exonic	synonymous_SNV
RCC_T9--2	chr9:34381440	C	T	358	0.168	296	36.483	5.084	60	36.567	5.682	284	57	C9orf24	exonic	synonymous_SNV
RCC_T9--3	chr9:34381440	C	T	355	0.285	254	37.705	4.247	101	36.465	7.028	247	91	C9orf24	exonic	synonymous_SNV
RCC_T9--4	chr9:34381440	C	T	249	0.165	208	36.913	5.386	41	37.244	4.510	203	38	C9orf24	exonic	synonymous_SNV
RCC_T9--5	chr9:34381440	C	T	195	0.159	164	36.366	4.908	31	36.355	3.251	156	31	C9orf24	exonic	synonymous_SNV
RCC_T9--GL	chr9:34381440	C	NA	221	0	221	35.235	7.319	0	0	0	205	0	C9orf24	exonic	synonymous_SNV