mavis package
=============

Subpackages
-----------

.. toctree::

    mavis.annotate
    mavis.bam
    mavis.cluster
    mavis.illustrate
    mavis.pairing
    mavis.summary
    mavis.validate

Submodules
----------

.. toctree::

   mavis.align
   mavis.assemble
   mavis.blat
   mavis.breakpoint
   mavis.config
   mavis.constants
   mavis.error
   mavis.interval
   mavis.main
   mavis.tools
   mavis.util

Module contents
---------------

.. automodule:: mavis
    :special-members: __and__, __or__, __xor__, __len__, __sub__, __add__
    :members:
    :undoc-members:
    :show-inheritance: