track  CG
shortLabel CG
longLabel CG
type bigBed
visibility dense
priority 0.1
bigDataUrl CG.bb
color 0,70,0

track  MspI
shortLabel MspI
longLabel MspI
type bigBed
visibility dense
priority 0.2
bigDataUrl MspI.bb
color 0,20,100


# RRBS

track Cell_1
container multiWig
shortLabel Cell_1
longLabel Cell-1 BSseeker2 RRBS
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale off
aggregate transparentOverlay
viewLimits -10:5
showSubtrackColorOnUi on
priority 1

        track Cell_1frmCG
        parent Cell_1
        shortLabel Cell_1frmCG
        longLabel Cell-1 fractional methylation calls (CpG)
        type bigWig
        bigDataUrl Cell_1.CG.frm.bb
        color 250,0,0

        track Cell_1frmCHG
        parent Cell_1
        shortLabel Cell_1frmCHG
        longLabel Cell-1 fractional methylation calls (CHG)
        type bigWig
        bigDataUrl Cell_1.CHG.frm.bb
        color 0,200,50

        track Cell_1frmCHH
        parent Cell_1
        shortLabel Cell_1frmCHH
        longLabel Cell-1 fractional methylation calls (CHH)
        type bigWig
        bigDataUrl Cell_1.CHH.frm.bb
        color 0,50,200

        track Cell_1cov
        parent Cell_1
        shortLabel Cell_1cov
        longLabel Cell-1 coverage [dups capped at 10]
        type bigWig
        bigDataUrl Cell_1.cov.bb
        color 30,30,30

track Cell_2
container multiWig
shortLabel Cell_2
longLabel Cell-2 BSseeker2 RRBS
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale off
aggregate transparentOverlay
viewLimits -10:5
showSubtrackColorOnUi on
priority 2

        track Cell_2frmCG
        parent Cell_2
        shortLabel Cell_2frmCG
        longLabel Cell-2 fractional methylation calls (CpG)
        type bigWig
        bigDataUrl Cell_2.CG.frm.bb
        color 250,0,0

        track Cell_2frmCHG
        parent Cell_2
        shortLabel Cell_2frmCHG
        longLabel Cell-2 fractional methylation calls (CHG)
        type bigWig
        bigDataUrl Cell_2.CHG.frm.bb
        color 0,200,50

        track Cell_2frmCHH
        parent Cell_2
        shortLabel Cell_2frmCHH
        longLabel Cell-2 fractional methylation calls (CHH)
        type bigWig
        bigDataUrl Cell_2.CHH.frm.bb
        color 0,50,200

        track Cell_2cov
        parent Cell_2
        shortLabel Cell_2cov
        longLabel Cell-2 coverage [dups capped at 10]
        type bigWig
        bigDataUrl Cell_2.cov.bb
        color 30,30,30

track Bulk
container multiWig
shortLabel Bulk
longLabel Bulk BSseeker2 RRBS
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale off
aggregate transparentOverlay
viewLimits -10:5
showSubtrackColorOnUi on
priority 3

        track BulkfrmCG
        parent Bulk
        shortLabel BulkfrmCG
        longLabel Bulk fractional methylation calls (CpG)
        type bigWig
        bigDataUrl Bulk.CG.frm.bb
        color 250,0,0

        track BulkfrmCHG
        parent Bulk
        shortLabel BulkfrmCHG
        longLabel Bulk fractional methylation calls (CHG)
        type bigWig
        bigDataUrl Bulk.CHG.frm.bb
        color 0,200,50

        track BulkfrmCHH
        parent Bulk
        shortLabel BulkfrmCHH
        longLabel Bulk fractional methylation calls (CHH)
        type bigWig
        bigDataUrl Bulk.CHH.frm.bb
        color 0,50,200

        track Bulkcov
        parent Bulk
        shortLabel Bulkcov
        longLabel Bulk coverage [dups capped at 10]
        type bigWig
        bigDataUrl Bulk.cov.bb
        color 30,30,30


track NTC
container multiWig
shortLabel NTC
longLabel NTC BSseeker2 RRBS
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale off
aggregate transparentOverlay
viewLimits -10:5
showSubtrackColorOnUi on
priority 4

        track NTCfrmCG
        parent NTC
        shortLabel NTCfrmCG
        longLabel NTC fractional methylation calls (CpG)
        type bigWig
        bigDataUrl NTC.CG.frm.bb
        color 250,0,0

        track NTCfrmCHG
        parent NTC
        shortLabel NTCfrmCHG
        longLabel NTC fractional methylation calls (CHG)
        type bigWig
        bigDataUrl NTC.CHG.frm.bb
        color 0,200,50

        track NTCfrmCHH
        parent NTC
        shortLabel NTCfrmCHH
        longLabel NTC fractional methylation calls (CHH)
        type bigWig
        bigDataUrl NTC.CHH.frm.bb
        color 0,50,200

        track NTCcov
        parent NTC
        shortLabel NTCcov
        longLabel NTC coverage [dups capped at 10]
        type bigWig
        bigDataUrl NTC.cov.bb
        color 30,30,30


track Undetermined
container multiWig
shortLabel Undetermined
longLabel Undetermined BSseeker2 RRBS
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale off
aggregate transparentOverlay
viewLimits -10:5
showSubtrackColorOnUi on
priority 5

        track UndeterminedfrmCG
        parent Undetermined
        shortLabel UndeterminedfrmCG
        longLabel Undetermined fractional methylation calls (CpG)
        type bigWig
        bigDataUrl Undetermined.CG.frm.bb
        color 250,0,0

        track UndeterminedfrmCHG
        parent Undetermined
        shortLabel UndeterminedfrmCHG
        longLabel Undetermined fractional methylation calls (CHG)
        type bigWig
        bigDataUrl Undetermined.CHG.frm.bb
        color 0,200,50

        track UndeterminedfrmCHH
        parent Undetermined
        shortLabel UndeterminedfrmCHH
        longLabel Undetermined fractional methylation calls (CHH)
        type bigWig
        bigDataUrl Undetermined.CHH.frm.bb
        color 0,50,200

        track Undeterminedcov
        parent Undetermined
        shortLabel Undeterminedcov
        longLabel Undetermined coverage [dups capped at 10]
        type bigWig
        bigDataUrl Undetermined.cov.bb
        color 30,30,30