mBM_HoxA9only_bulk

1,290
Estimated Number of Cells
345,309
Mean Reads per Cell
2,123
Median Genes per Cell

Sequencing

Number of Reads445,448,528
Number of Short Reads Skipped0
Valid Barcodes96.5%
Valid UMIs99.7%
Sequencing Saturation87.2%
Q30 Bases in Barcode95.9%
Q30 Bases in RNA Read95.1%
Q30 Bases in UMI96.0%

Mapping

Reads Mapped to Genome92.7%
Reads Mapped Confidently to Genome86.5%
Reads Mapped Confidently to Intergenic Regions5.6%
Reads Mapped Confidently to Intronic Regions9.6%
Reads Mapped Confidently to Exonic Regions71.4%
Reads Mapped Confidently to Transcriptome68.7%
Reads Mapped Antisense to Gene1.5%
 

Cells

110010k110100100010k100k
CellsBackgroundBarcode Rank PlotBarcodesUMI counts
Estimated Number of Cells1,290
Fraction Reads in Cells87.3%
Mean Reads per Cell345,309
Median UMI Counts per Cell11,351
Median Genes per Cell2,123
Total Genes Detected17,537

Sample

Sample IDmBM_HoxA9only_bulk
Sample Description
ChemistrySingle Cell 3' v3
Include intronsFalse
Reference Path
‎/projects/epigenomics3/resources/cell_ranger_resources/genomes/refdata-gex-mm10-2020-A‎
Transcriptomemm10-2020-A
Pipeline Versioncellranger-6.1.2