[bwa_index] Pack FASTA... 34.94 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=6199845082, availableWord=448243540
[BWTIncConstructFromPacked] 10 iterations done. 99999994 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999994 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999994 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999994 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999994 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999994 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 699999994 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 799999994 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999994 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999994 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999994 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999994 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999994 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999994 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999994 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999994 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999994 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999994 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999994 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999994 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999994 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999994 characters processed.
[BWTIncConstructFromPacked] 230 iterations done. 2299999994 characters processed.
[BWTIncConstructFromPacked] 240 iterations done. 2399999994 characters processed.
[BWTIncConstructFromPacked] 250 iterations done. 2499999994 characters processed.
[BWTIncConstructFromPacked] 260 iterations done. 2599999994 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999994 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999994 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999994 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999994 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999994 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999994 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999994 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999994 characters processed.
[BWTIncConstructFromPacked] 350 iterations done. 3499999994 characters processed.
[BWTIncConstructFromPacked] 360 iterations done. 3599999994 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3699999994 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3799999994 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3899999994 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3999999994 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 4099999994 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4199999994 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4299999994 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4399999994 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4499999994 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4599999994 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4699999994 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4799999994 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4899999994 characters processed.
[BWTIncConstructFromPacked] 500 iterations done. 4999999994 characters processed.
[BWTIncConstructFromPacked] 510 iterations done. 5099999994 characters processed.
[BWTIncConstructFromPacked] 520 iterations done. 5199999994 characters processed.
[BWTIncConstructFromPacked] 530 iterations done. 5299999994 characters processed.
[BWTIncConstructFromPacked] 540 iterations done. 5399999994 characters processed.
[BWTIncConstructFromPacked] 550 iterations done. 5499999994 characters processed.
[BWTIncConstructFromPacked] 560 iterations done. 5596764458 characters processed.
[BWTIncConstructFromPacked] 570 iterations done. 5683075690 characters processed.
[BWTIncConstructFromPacked] 580 iterations done. 5759785322 characters processed.
[BWTIncConstructFromPacked] 590 iterations done. 5827961034 characters processed.
[BWTIncConstructFromPacked] 600 iterations done. 5888551818 characters processed.
[BWTIncConstructFromPacked] 610 iterations done. 5942400986 characters processed.
[BWTIncConstructFromPacked] 620 iterations done. 5990258282 characters processed.
[BWTIncConstructFromPacked] 630 iterations done. 6032789930 characters processed.
[BWTIncConstructFromPacked] 640 iterations done. 6070588138 characters processed.
[BWTIncConstructFromPacked] 650 iterations done. 6104179258 characters processed.
[BWTIncConstructFromPacked] 660 iterations done. 6134031130 characters processed.
[BWTIncConstructFromPacked] 670 iterations done. 6160559482 characters processed.
[BWTIncConstructFromPacked] 680 iterations done. 6184133946 characters processed.
[bwt_gen] Finished constructing BWT in 688 iterations.
[bwa_index] 4303.70 seconds elapse.
[bwa_index] Update BWT... 17.19 sec
[bwa_index] Pack forward-only FASTA... 15.07 sec
[bwa_index] Construct SA from BWT and Occ... 1128.27 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index genomes/hg38/bwa_index/bwa-0.7.17/genome.fa
[main] Real time: 5578.037 sec; CPU: 5499.178 sec