[bwa_index] Pack FASTA... 35.95 sec [bwa_index] Construct BWT for the packed sequence... [BWTIncCreate] textLength=6199501436, availableWord=448219384 [BWTIncConstructFromPacked] 10 iterations done. 99999996 characters processed. [BWTIncConstructFromPacked] 20 iterations done. 199999996 characters processed. [BWTIncConstructFromPacked] 30 iterations done. 299999996 characters processed. [BWTIncConstructFromPacked] 40 iterations done. 399999996 characters processed. [BWTIncConstructFromPacked] 50 iterations done. 499999996 characters processed. [BWTIncConstructFromPacked] 60 iterations done. 599999996 characters processed. [BWTIncConstructFromPacked] 70 iterations done. 699999996 characters processed. [BWTIncConstructFromPacked] 80 iterations done. 799999996 characters processed. [BWTIncConstructFromPacked] 90 iterations done. 899999996 characters processed. [BWTIncConstructFromPacked] 100 iterations done. 999999996 characters processed. 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[BWTIncConstructFromPacked] 470 iterations done. 4699999996 characters processed. [BWTIncConstructFromPacked] 480 iterations done. 4799999996 characters processed. [BWTIncConstructFromPacked] 490 iterations done. 4899999996 characters processed. [BWTIncConstructFromPacked] 500 iterations done. 4999999996 characters processed. [BWTIncConstructFromPacked] 510 iterations done. 5099999996 characters processed. [BWTIncConstructFromPacked] 520 iterations done. 5199999996 characters processed. [BWTIncConstructFromPacked] 530 iterations done. 5299999996 characters processed. [BWTIncConstructFromPacked] 540 iterations done. 5399999996 characters processed. [BWTIncConstructFromPacked] 550 iterations done. 5499999996 characters processed. [BWTIncConstructFromPacked] 560 iterations done. 5596733548 characters processed. [BWTIncConstructFromPacked] 570 iterations done. 5683010028 characters processed. [BWTIncConstructFromPacked] 580 iterations done. 5759688796 characters processed. [BWTIncConstructFromPacked] 590 iterations done. 5827837068 characters processed. [BWTIncConstructFromPacked] 600 iterations done. 5888403388 characters processed. [BWTIncConstructFromPacked] 610 iterations done. 5942230876 characters processed. [BWTIncConstructFromPacked] 620 iterations done. 5990068876 characters processed. [BWTIncConstructFromPacked] 630 iterations done. 6032583388 characters processed. [BWTIncConstructFromPacked] 640 iterations done. 6070366396 characters processed. [BWTIncConstructFromPacked] 650 iterations done. 6103943980 characters processed. [BWTIncConstructFromPacked] 660 iterations done. 6133783772 characters processed. [BWTIncConstructFromPacked] 670 iterations done. 6160301452 characters processed. [BWTIncConstructFromPacked] 680 iterations done. 6183866396 characters processed. [bwt_gen] Finished constructing BWT in 688 iterations. [bwa_index] 4643.48 seconds elapse. [bwa_index] Update BWT... 16.86 sec [bwa_index] Pack forward-only FASTA... 15.14 sec [bwa_index] Construct SA from BWT and Occ... 1132.77 sec [main] Version: 0.7.17-r1188 [main] CMD: bwa index genomes/grch38/bwa_index/bwa-0.7.17/genome.fa [main] Real time: 5922.723 sec; CPU: 5844.208 sec