[bwa_index] Pack FASTA... 35.18 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=6199501436, availableWord=448219384
[BWTIncConstructFromPacked] 10 iterations done. 99999996 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999996 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999996 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999996 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999996 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999996 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 699999996 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 799999996 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999996 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999996 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999996 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999996 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999996 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999996 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999996 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999996 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999996 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999996 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999996 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999996 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999996 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999996 characters processed.
[BWTIncConstructFromPacked] 230 iterations done. 2299999996 characters processed.
[BWTIncConstructFromPacked] 240 iterations done. 2399999996 characters processed.
[BWTIncConstructFromPacked] 250 iterations done. 2499999996 characters processed.
[BWTIncConstructFromPacked] 260 iterations done. 2599999996 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999996 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999996 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999996 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999996 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999996 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999996 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999996 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999996 characters processed.
[BWTIncConstructFromPacked] 350 iterations done. 3499999996 characters processed.
[BWTIncConstructFromPacked] 360 iterations done. 3599999996 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3699999996 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3799999996 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3899999996 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3999999996 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 4099999996 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4199999996 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4299999996 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4399999996 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4499999996 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4599999996 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4699999996 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4799999996 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4899999996 characters processed.
[BWTIncConstructFromPacked] 500 iterations done. 4999999996 characters processed.
[BWTIncConstructFromPacked] 510 iterations done. 5099999996 characters processed.
[BWTIncConstructFromPacked] 520 iterations done. 5199999996 characters processed.
[BWTIncConstructFromPacked] 530 iterations done. 5299999996 characters processed.
[BWTIncConstructFromPacked] 540 iterations done. 5399999996 characters processed.
[BWTIncConstructFromPacked] 550 iterations done. 5499999996 characters processed.
[BWTIncConstructFromPacked] 560 iterations done. 5596733548 characters processed.
[BWTIncConstructFromPacked] 570 iterations done. 5683010028 characters processed.
[BWTIncConstructFromPacked] 580 iterations done. 5759688796 characters processed.
[BWTIncConstructFromPacked] 590 iterations done. 5827837068 characters processed.
[BWTIncConstructFromPacked] 600 iterations done. 5888403388 characters processed.
[BWTIncConstructFromPacked] 610 iterations done. 5942230876 characters processed.
[BWTIncConstructFromPacked] 620 iterations done. 5990068876 characters processed.
[BWTIncConstructFromPacked] 630 iterations done. 6032583388 characters processed.
[BWTIncConstructFromPacked] 640 iterations done. 6070366396 characters processed.
[BWTIncConstructFromPacked] 650 iterations done. 6103943980 characters processed.
[BWTIncConstructFromPacked] 660 iterations done. 6133783772 characters processed.
[BWTIncConstructFromPacked] 670 iterations done. 6160301452 characters processed.
[BWTIncConstructFromPacked] 680 iterations done. 6183866396 characters processed.
[bwt_gen] Finished constructing BWT in 688 iterations.
[bwa_index] 4267.54 seconds elapse.
[bwa_index] Update BWT... 16.97 sec
[bwa_index] Pack forward-only FASTA... 14.82 sec
[bwa_index] Construct SA from BWT and Occ... 1125.19 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index genomes/grch38-legacy/bwa_index/bwa-0.7.17/genome.fa
[main] Real time: 5533.043 sec; CPU: 5459.714 sec